RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GPATCH2L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000021254

Ensembl transcript IDs: ENSMUST00000071106.6, ENSMUST00000221368.2

Found 222 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGCCAAGGAGAGGCAGCTCTAAGGCAGCAGCTGAAGGTGAATGGTaGGCGAGCAACGAAGGAAGGGGACAGCAGAGGGTGCCCCACCCA +
Preference number: 1 (lower is better)
Translates to: LPRRGSSKAAAEGEW*ASNEGRGQQRVPHP
Trigger: TGGGTGGGGCACCCTCTGCTGTCCCCTTCCTTCGTTGCTCGCCCACCATTCACCTTCAGCTGCTGCCTTAGAGCTGCCTCTCCTTGGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CCA 90 bp CAGCTGCCAAGGAGAGGCAGCTCTAAGGCAGCAGCTGAAGGTGAATaGTGGGCGAGCAACGAAGGAAGGGGACAGCAGAGGGTGCCCCAC +
Preference number: 1 (lower is better)
Translates to: QLPRRGSSKAAAEGE*WASNEGRGQQRVPH
Trigger: GTGGGGCACCCTCTGCTGTCCCCTTCCTTCGTTGCTCGCCCACCATTCACCTTCAGCTGCTGCCTTAGAGCTGCCTCTCCTTGGCAGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CCA 90 bp CAGCCACCGAGCTTCAGGCTTCCCTTTGCAAACAGACTCACATTCTaGCCCCTGCCCACCTCACTGCTGAAGAGTCACAGAGTGGCCTCC +
Preference number: 1 (lower is better)
Translates to: QPPSFRLPFANRLTF*PLPTSLLKSHRVAS
Trigger: GGAGGCCACTCTGTGACTCTTCAGCAGTGAGGTGGGCAGGGGCCAGAATGTGAGTCTGTTTGCAAAGGGAAGCCTGAAGCTCGGTGGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CCA 90 bp ACGCCATCCTGCTGGTGTCTCTTCTGGGGCCCTAAGCTGAGAACTTaGTTGCTGTCTCTTACTGGTCCTGAGGGGATGGAGACTCGATGG +
Preference number: 1 (lower is better)
Translates to: TPSCWCLFWGPKLRT*LLSLTGPEGMETRW
Trigger: CCATCGAGTCTCCATCCCCTCAGGACCAGTAAGAGACAGCAACCAAGTTCTCAGCTTAGGGCCCCAGAAGAGACACCAGCAGGATGGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR GCA 90 bp CACAGAGTGGCCTCCCAAATGAATGTAGCTCTCGGGGGAACACACTaGTTACACTCCCTGGGAGGGATAATGACCCTTCAGGGAGAGGAC +
Preference number: 1 (lower is better)
Translates to: HRVASQMNVALGGTH*LHSLGGIMTLQGED
Trigger: GTCCTCTCCCTGAAGGGTCATTATCCCTCCCAGGGAGTGTAAGCAGTGTGTTCCCCCGAGAGCTACATTCATTTGGGAGGCCACTCTGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR GCA 90 bp TGGTCAGCTGATACATTCTCAGCCACCGAGCTTCAGGCTTCCCTTTaGAAACAGACTCACATTCTGGCCCCTGCCCACCTCACTGCTGAA +
Preference number: 1 (lower is better)
Translates to: WSADTFSATELQASL*KQTHILAPAHLTAE
Trigger: TTCAGCAGTGAGGTGGGCAGGGGCCAGAATGTGAGTCTGTTTGCAAAGGGAAGCCTGAAGCTCGGTGGCTGAGAATGTATCAGCTGACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CCA 90 bp TCAGCTGATACAAAAAGAGAGAGCTGTGTCAAGCACAGCCCTGAATaGCAGGTGCTCCAGATGACACTTTTGGGAAATGTGGCTCTTCCC +
Preference number: 1 (lower is better)
Translates to: SADTKRESCVKHSPE*QVLQMTLLGNVALP
Trigger: GGGAAGAGCCACATTTCCCAAAAGTGTCATCTGGAGCACCTGCCATTCAGGGCTGTGCTTGACACAGCTCTCTCTTTTTGTATCAGCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR TCA 90 bp AGCATCAACTTCGGGCACAACTATATACACAACTGTACTTGCAGCTaGGCGGTCATAAACACACCACATAGAAAGGCATGTCAAAAAGAC +
Preference number: 1 (lower is better)
Translates to: SINFGHNYIHNCTCS*AVINTPHRKACQKD
Trigger: GTCTTTTTGACATGCCTTTCTATGTGGTGTGTTTATGACCGCTCAGCTGCAAGTACAGTTGTGTATATAGTTGTGCCCGAAGTTGATGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR TCA 90 bp AACGTGTTTCCAACTGGCTGCAAATTTAGGATTTCATCAGCGACATaGAAAGCTCTACACAGAAGGTACGCAAAAGCTGTTGCTAGATTT +
Preference number: 1 (lower is better)
Translates to: NVFPTGCKFRISSAT*KALHRRYAKAVARF
Trigger: AAATCTAGCAACAGCTTTTGCGTACCTTCTGTGTAGAGCTTTTCATGTCGCTGATGAAATCCTAAATTTGCAGCCAGTTGGAAACACGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CAA 90 bp CCATCCTGCTGGTGTCTCTTCTGGGGCCCTAAGCTGAGAACTTGGTaGCTGTCTCTTACTGGTCCTGAGGGGATGGAGACTCGATGGCCA +
Preference number: 2 (lower is better)
Translates to: PSCWCLFWGPKLRTW*LSLTGPEGMETRWP
Trigger: TGGCCATCGAGTCTCCATCCCCTCAGGACCAGTAAGAGACAGCAACCAAGTTCTCAGCTTAGGGCCCCAGAAGAGACACCAGCAGGATGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CAA 90 bp TGTGTCAAGCACAGCCCTGAATGGCAGGTGCTCCAGATGACACTTTaGGGAAATGTGGCTCTTCCCCAGCAGCTCCAGGCACTCACTTCC +
Preference number: 2 (lower is better)
Translates to: CVKHSPEWQVLQMTL*GNVALPQQLQALTS
Trigger: GGAAGTGAGTGCCTGGAGCTGCTGGGGAAGAGCCACATTTCCCAAAAGTGTCATCTGGAGCACCTGCCATTCAGGGCTGTGCTTGACACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR GCA 90 bp GTGGCCTCCCAAATGAATGTAGCTCTCGGGGGAACACACTGCTTACACTCCCTGAGTGGCTTTCTCTGCTaGAGAGGTCCCGTCCAACCA +
Preference number: 2 (lower is better)
Translates to: VASQMNVALGGTHCLHSLSGFLC*RGPVQP
Trigger: TGGTTGGACGGGACCTCTGCAGCAGAGAAAGCCACT...CAGGGAGTGTAAGCAGTGTGTTCCCCCGAGAGCTACATTCATTTGGGAGGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
3UTR-3UTR CCA 90 bp GTGGCCTCCCAAATGAATGTAGCTCTCGGGGGAACACACTGCTTACACTCCCTGACACCCATTGGTTCCTaGGCTAGAGCTGCAGCCAGA +
Preference number: 2 (lower is better)
Translates to: VASQMNVALGGTHCLHSLTPIGS*ARAAAR
Trigger: TCTGGCTGCAGCTCTAGCCCAGGAACCAATGGGTGT...CAGGGAGTGTAAGCAGTGTGTTCCCCCGAGAGCTACATTCATTTGGGAGGCCAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
3UTR-3UTR TCA 90 bp ACAGTAGAAATGTGTTCCACTGGCCACTGCAGGAGCAGACGGCACACACACATCGGCAGGTGCTCCAGATaGCACTTTTGGGAAATGTGG +
Preference number: 2 (lower is better)
Translates to: TVEMCSTGHCRSRRHTHIGRCSR*HFWEMW
Trigger: CCACATTTCCCAAAAGTGTCATCTGGAGCACCTGCC...GATGTGTGTGTGCCGTCTGCTCCTGCAGTGGCCAGTGGAACACATTTCTACTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR GCA 90 bp CATCATCCACTAGTTTGCCGAGCACCTAAACCCCCATCTGCACTGGAGCACACAAAAGAGCAACTGCTGTaGGTGACGAGGAGTCAGTCC +
Preference number: 2 (lower is better)
Translates to: HHPLVCRAPKPPSALEHTKEQLL*VTRSQS
Trigger: GGACTGACTCCTCGTCACGCACAGCAGTTGCTCTTT...TGTGTGCTCCAGTGCAGATGGGGGTTTAGGTGCTCGGCAAACTAGTGGATGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR GCA 90 bp GAGTCACAGAGTGGCCTCCCAAATGAATGTAGCTCTCGGGGGAACACACTGCTTGATGGCCAGCCTTACTaGACAGACACAATCCCATCC +
Preference number: 2 (lower is better)
Translates to: ESQSGLPNECSSRGNTLLDGQPY*TDTIPS
Trigger: GGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATC...AAGCAGTGTGTTCCCCCGAGAGCTACATTCATTTGGGAGGCCACTCTGTGACTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR CCA 90 bp ATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACTGCTGGAGGAAAGGCAGTaGCTTTCTCTGCTGCAGAGG +
Preference number: 2 (lower is better)
Translates to: MASLTAQTQSHPATCFQLLEERQ*LSLLQR
Trigger: CCTCTGCAGCAGAGAAAGCCACTGCCTTTCCTCCAG...CAGTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
3UTR-3UTR TCA 90 bp ATTCTGGCCCCTGCCCACCTCACTGCTGAAGAGTCACAGAGTGGCCTCCCAAATTTTCCTGTGGCATTTTaGAAAACGTGGCTGGAGGAA +
Preference number: 2 (lower is better)
Translates to: ILAPAHLTAEESQSGLPNFPVAF*KTWLEE
Trigger: TTCCTCCAGCCACGTTTTTCAAAATGCCACAGGAAA...ATTTGGGAGGCCACTCTGTGACTCTTCAGCAGTGAGGTGGGCAGGGGCCAGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
3UTR-3UTR GCA 90 bp ATTGGTTCCTGGGCTAGAGCTGCAGCCAGAATTCTTTTCCTGTGGCATTTTGAAGGCAGTGGCTTTCTCTaGTGCAGAGGTCCCGTCCAA +
Preference number: 2 (lower is better)
Translates to: IGSWARAAARILFLWHFEGSGFL*CRGPVQ
Trigger: TTGGACGGGACCTCTGCAGCAGAGAAAGCCACTGCC...TTCAAAATGCCACAGGAAAAGAATTCTGGCTGCAGCTCTAGCCCAGGAACCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
3UTR-3UTR CCA 90 bp GACAGGGTTTGGTGTTACTCTTCTCATCCTGCAATCTCTTTCTGCACCCCCTCTAAGCACAGCCCTGAATaGCAGGTGCTCCAGATGACA +
Preference number: 2 (lower is better)
Translates to: DRVWCYSSHPAISFCTPSKHSPE*QVLQMT
Trigger: TGTCATCTGGAGCACCTGCCATTCAGGGCTGTGCTT...AGAGGGGGTGCAGAAAGAGATTGCAGGATGAGAAGAGTAACACCAAACCCTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR TCA 90 bp ACAGTAGAAATGTGTTCCACTGGCCACTGCAGGAGCAGACGGCACACACACATCTTTTTCTCTCTGACATaGCCAAGGCAGCGAGCATTT +
Preference number: 2 (lower is better)
Translates to: TVEMCSTGHCRSRRHTHIFFSLT*PRQRAF
Trigger: AAATGCTCGCTGCCTTGGTCATGTCAGAGAGAAAAA...GATGTGTGTGTGCCGTCTGCTCCTGCAGTGGCCAGTGGAACACATTTCTACTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR CCA 90 bp AGGGTTTGGTGTTACTCTTCTCATCCTGCAATCTCTTTCTGCACCCCCTCTACCGATAAAGCCTTAGGCTaGGGTCAGCACATCATCCAC +
Preference number: 2 (lower is better)
Translates to: RVWCYSSHPAISFCTPSTDKALG*GQHIIH
Trigger: GTGGATGATGTGCTGACCCCAGCCTAAGGCTTTATC...GGTAGAGGGGGTGCAGAAAGAGATTGCAGGATGAGAAGAGTAACACCAAACCCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CAA 90 bp ACTCTTCTCATCCTGCAATCTCTTTCTGCACCCCCTCTACCATTTTaGTTATGGTCAGCTGATACATTCTCAGCCACCGAGCTTCAGGCT +
Preference number: 2 (lower is better)
Translates to: TLLILQSLSAPPLPF*LWSADTFSATELQA
Trigger: AGCCTGAAGCTCGGTGGCTGAGAATGTATCAGCTGACCATAACAAAAATGGTAGAGGGGGTGCAGAAAGAGATTGCAGGATGAGAAGAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR GCA 90 bp GGATTTCATCAGCGACATGAAAAGCTCTACACAGAAGGTACGCAAAAGCTGTTGAAAGAGCAACTGCTGTaGGTGACGAGGAGTCAGTCC +
Preference number: 2 (lower is better)
Translates to: GFHQRHEKLYTEGTQKLLKEQLL*VTRSQS
Trigger: GGACTGACTCCTCGTCACGCACAGCAGTTGCTCTTT...CAACAGCTTTTGCGTACCTTCTGTGTAGAGCTTTTCATGTCGCTGATGAAATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR CCA 90 bp GACAGGGTTTGGTGTTACTCTTCTCATCCTGCAATCTCTTTCTGCACCCCCTCTCCTAAGCTGAGAACTTaGTTGCTGTCTCTTACTGGT +
Preference number: 2 (lower is better)
Translates to: DRVWCYSSHPAISFCTPSPKLRT*LLSLTG
Trigger: ACCAGTAAGAGACAGCAACCAAGTTCTCAGCTTAGG...AGAGGGGGTGCAGAAAGAGATTGCAGGATGAGAAGAGTAACACCAAACCCTGTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR GCA 90 bp TCTCTTTCTGCACCCCCTCTACCATTTTTGTTATGGTCAGCTGATACATTCTCAGATGGCCAGCCTTACTaGACAGACACAATCCCATCC +
Preference number: 2 (lower is better)
Translates to: SLSAPPLPFLLWSADTFSDGQPY*TDTIPS
Trigger: GGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATC...TGAGAATGTATCAGCTGACCATAACAAAAATGGTAGAGGGGGTGCAGAAAGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR TCA 90 bp TTTTGTTATGGTCAGCTGATACATTCTCAGCCACCGAGCTTCAGGCTTCCCTTTTTTTTCTCTCTGACATaGCCAAGGCAGCGAGCATTT +
Preference number: 2 (lower is better)
Translates to: FCYGQLIHSQPPSFRLPFFFSLT*PRQRAF
Trigger: AAATGCTCGCTGCCTTGGTCATGTCAGAGAGAAAAA...AAAGGGAAGCCTGAAGCTCGGTGGCTGAGAATGTATCAGCTGACCATAACAAAA
46% GC, longest homopolymer 8 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR CCA 90 bp TTTTGTTATGGTCAGCTGATACATTCTCAGCCACCGAGCTTCAGGCTTCCCTTTTTTGAAAAACGTGGCTaGAGGAAAGGCAGTGGCTTT +
Preference number: 2 (lower is better)
Translates to: FCYGQLIHSQPPSFRLPFFEKRG*RKGSGF
Trigger: AAAGCCACTGCCTTTCCTCCAGCCACGTTTTTCAAA...AAAGGGAAGCCTGAAGCTCGGTGGCTGAGAATGTATCAGCTGACCATAACAAAA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
3UTR-3UTR CCA 90 bp TCTCAACAAGCCGTCATCAAGACCAGTGAACCAGTTTGGAAATATTTAAAAAGCTGCTGGTGTCTCTTCTaGGGCCCTAAGCTGAGAACT +
Preference number: 2 (lower is better)
Translates to: SQQAVIKTSEPVWKYLKSCWCLF*GPKLRT
Trigger: AGTTCTCAGCTTAGGGCCCCAGAAGAGACACCAGCA...GCTTTTTAAATATTTCCAAACTGGTTCACTGGTCTTGATGACGGCTTGTTGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR CCA 90 bp ACACACCACATAGAAAGGCATGTCAAAAAGACATCGTTTCTTCCTAAACCATGGCCTAAGCTGAGAACTTaGTTGCTGTCTCTTACTGGT +
Preference number: 2 (lower is better)
Translates to: THHIERHVKKTSFLPKPWPKLRT*LLSLTG
Trigger: ACCAGTAAGAGACAGCAACCAAGTTCTCAGCTTAGG...CCATGGTTTAGGAAGAAACGATGTCTTTTTGACATGCCTTTCTATGTGGTGTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR GCA 90 bp CATGTCAAAAAGACATCGTTTCTTCCTAAACCATGGCCCCAACTAACCATTACAGTGTTTCCAACTGGCTaGAAATTTAGGATTTCATCA +
Preference number: 2 (lower is better)
Translates to: HVKKTSFLPKPWPQLTITVFPTG*KFRISS
Trigger: TGATGAAATCCTAAATTTGCAGCCAGTTGGAAACAC...TGTAATGGTTAGTTGGGGCCATGGTTTAGGAAGAAACGATGTCTTTTTGACATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR GCA 72 bp ACCATGTGCAGGCAAGGGAAGGCTCCCACGCCATCCTaGTGGTGTCTCTTCTGGGGCCCTAAGCTGAGAACT +
Preference number: 3 (lower is better)
Translates to: TMCRQGKAPTPS*WCLFWGPKLRT
Trigger: AGTTCTCAGCTTAGGGCCCCAGAAGAGACACCAGCAGGATGGCGTGGGAGCCTTCCCTTGCCTGCACATGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CCA 72 bp AGAGGCAGCTCTAAGGCAGCAGCTGAAGGTGAATGGTaGGCGAGCAACGAAGGAAGGGGACAGCAGAGGGTG +
Preference number: 3 (lower is better)
Translates to: RGSSKAAAEGEW*ASNEGRGQQRV
Trigger: CACCCTCTGCTGTCCCCTTCCTTCGTTGCTCGCCCACCATTCACCTTCAGCTGCTGCCTTAGAGCTGCCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CCA 72 bp AGGAGAGGCAGCTCTAAGGCAGCAGCTGAAGGTGAATaGTGGGCGAGCAACGAAGGAAGGGGACAGCAGAGG +
Preference number: 3 (lower is better)
Translates to: RRGSSKAAAEGE*WASNEGRGQQR
Trigger: CCTCTGCTGTCCCCTTCCTTCGTTGCTCGCCCACCATTCACCTTCAGCTGCTGCCTTAGAGCTGCCTCTCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CCA 72 bp GGGAAGGCTCCCACGCCATCCTGCTGGTGTCTCTTCTaGGGCCCTAAGCTGAGAACTTGGTTGCTGTCTCTT +
Preference number: 3 (lower is better)
Translates to: GKAPTPSCWCLF*GPKLRTWLLSL
Trigger: AAGAGACAGCAACCAAGTTCTCAGCTTAGGGCCCCAGAAGAGACACCAGCAGGATGGCGTGGGAGCCTTCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR TCA 72 bp CGCCATCCTGCTGGTGTCTCTTCTGGGGCCCTAAGCTaGGAACTTGGTTGCTGTCTCTTACTGGTCCTGAGG +
Preference number: 3 (lower is better)
Translates to: RHPAGVSSGALS*ELGCCLLLVLR
Trigger: CCTCAGGACCAGTAAGAGACAGCAACCAAGTTCTCAGCTTAGGGCCCCAGAAGAGACACCAGCAGGATGGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR GCA 72 bp AGCCTTAGGCTGGGGTCAGCACATCATCCACTAGTTTaGCGAGCACCTAAACCCCCATCTGCACTGGAGCAC +
Preference number: 3 (lower is better)
Translates to: SLRLGSAHHPLV*RAPKPPSALEH
Trigger: GTGCTCCAGTGCAGATGGGGGTTTAGGTGCTCGGCAAACTAGTGGATGATGTGCTGACCCCAGCCTAAGGCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR GCA 72 bp GATACATTCTCAGCCACCGAGCTTCAGGCTTCCCTTTaGAAACAGACTCACATTCTGGCCCCTGCCCACCTC +
Preference number: 3 (lower is better)
Translates to: DTFSATELQASL*KQTHILAPAHL
Trigger: GAGGTGGGCAGGGGCCAGAATGTGAGTCTGTTTGCAAAGGGAAGCCTGAAGCTCGGTGGCTGAGAATGTATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CCA 72 bp CTGTCTCTTACTGGTCCTGAGGGGATGGAGACTCGATaGCCAGCCTTACTGCACAGACACAATCCCATCCAG +
Preference number: 3 (lower is better)
Translates to: LSLTGPEGMETR*PALLHRHNPIQ
Trigger: CTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCGAGTCTCCATCCCCTCAGGACCAGTAAGAGACAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CCA 72 bp TGCTGGTGTCTCTTCTGGGGCCCTAAGCTGAGAACTTaGTTGCTGTCTCTTACTGGTCCTGAGGGGATGGAG +
Preference number: 3 (lower is better)
Translates to: CWCLFWGPKLRT*LLSLTGPEGME
Trigger: CTCCATCCCCTCAGGACCAGTAAGAGACAGCAACCAAGTTCTCAGCTTAGGGCCCCAGAAGAGACACCAGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR GCA 72 bp GCCTCCCAAATGAATGTAGCTCTCGGGGGAACACACTaGTTACACTCCCTGGGAGGGATAATGACCCTTCAG +
Preference number: 3 (lower is better)
Translates to: ASQMNVALGGTH*LHSLGGIMTLQ
Trigger: CTGAAGGGTCATTATCCCTCCCAGGGAGTGTAAGCAGTGTGTTCCCCCGAGAGCTACATTCATTTGGGAGGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR GCA 72 bp CAACTCAGGACAGTAGAAATGTGTTCCACTGGCCACTaGAGGAGCAGACGGCACACACACATCCACTTTCAC +
Preference number: 3 (lower is better)
Translates to: QLRTVEMCSTGH*RSRRHTHIHFH
Trigger: GTGAAAGTGGATGTGTGTGTGCCGTCTGCTCCTGCAGTGGCCAGTGGAACACATTTCTACTGTCCTGAGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CCA 72 bp CAGGGCAGCCTAGCAGGGACGTCTGTTGTTTCAGTGTaGGCTCACTCATACAATGGAGTAAAGCATGCAACT +
Preference number: 3 (lower is better)
Translates to: QGSLAGTSVVSV*AHSYNGVKHAT
Trigger: AGTTGCATGCTTTACTCCATTGTATGAGTGAGCCCACACTGAAACAACAGACGTCCCTGCTAGGCTGCCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR-3UTR CAA 90 bp AGACTCGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTTTTTCCTGTGGCATTTaGAAAAACGTGGCTGGAGGA +
Preference number: 3 (lower is better)
Translates to: RLDGQPYCTDTIPSSNVFFSCGI*KNVAGG
Trigger: TCCTCCAGCCACGTTTTTCAAAATGCCACAGGAAAA...AAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCGAGTCT
49% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
3UTR CCA 72 bp ACAAAAAGAGAGAGCTGTGTCAAGCACAGCCCTGAATaGCAGGTGCTCCAGATGACACTTTTGGGAAATGTG +
Preference number: 3 (lower is better)
Translates to: TKRESCVKHSPE*QVLQMTLLGNV
Trigger: CACATTTCCCAAAAGTGTCATCTGGAGCACCTGCCATTCAGGGCTGTGCTTGACACAGCTCTCTCTTTTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR TCA 72 bp CAAATATTTTCTCAAAGAAAGAGCAACTGCTGTGCGTaGCGAGGAGTCAGTCCTTGTGGCATTAGGCCCAAG +
Preference number: 3 (lower is better)
Translates to: QIFSQRKSNCCA*RGVSPCGIRPK
Trigger: CTTGGGCCTAATGCCACAAGGACTGACTCCTCGTCACGCACAGCAGTTGCTCTTTCTTTGAGAAAATATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR TCA 72 bp GCTAGCTGTCTTAAGGAGAGGTTTTTCTCTCTGACATaGCCAAGGCAGCGAGCATTTAACAACGCTACCATG +
Preference number: 3 (lower is better)
Translates to: ASCLKERFFSLT*PRQRAFNNATM
Trigger: CATGGTAGCGTTGTTAAATGCTCGCTGCCTTGGTCATGTCAGAGAGAAAAACCTCTCCTTAAGACAGCTAGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CCA 72 bp CAATCTCTTTCTGCACCCCCTCTACCATTTTTGTTATaGTCAGCTGATACATTCTCAGCCACCGAGCTTCAG +
Preference number: 3 (lower is better)
Translates to: QSLSAPPLPFLL*SADTFSATELQ
Trigger: CTGAAGCTCGGTGGCTGAGAATGTATCAGCTGACCATAACAAAAATGGTAGAGGGGGTGCAGAAAGAGATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR TCA 72 bp TGGCCATCTTTAAGGGCTGCAGGTGATCTTCAATACTaGCAACAAAACTTGATTGCAAAACTGCATCTCTCC +
Preference number: 3 (lower is better)
Translates to: WPSLRAAGDLQY*QQNLIAKLHLS
Trigger: GGAGAGATGCAGTTTTGCAATCAAGTTTTGTTGTCAGTATTGAAGATCACCTGCAGCCCTTAAAGATGGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR TCA 72 bp GCTCTTCCTTTAAATGCTGTATCTGAGAACAGTCTCTaGCCCGTGAAACCTCCTGGTAAAGCTAAAATCTTG +
Preference number: 3 (lower is better)
Translates to: ALPLNAVSENSL*PVKPPGKAKIL
Trigger: CAAGATTTTAGCTTTACCAGGAGGTTTCACGGGTCAGAGACTGTTCTCAGATACAGCATTTAAAGGAAGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp TTTGCCGAGCACCTAAACCCCCATCTGCACTGGAGCACACAGACCTCTGGGCCCGAGTCAGGAGGCTTCTaGGCTGGGATGGCCGGCTCC +
Preference number: 4 (lower is better)
Translates to: FAEHLNPHLHWSTQTSGPESGGF*AGMAGS
Trigger: GGAGCCGGCCATCCCAGCTCAGAAGCCTCCTGACTC...GGGCCCAGAGGTCTGTGTGCTCCAGTGCAGATGGGGGTTTAGGTGCTCGGCAAA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp CGATCCCCTCAGACCATGTGCAGGCAAGGGAAGGCTCCCACGCCATCCTGCTGGCGGCTCCAGAACATCTaGGTGCACTGGCAGAGCAGT +
Preference number: 4 (lower is better)
Translates to: RSPQTMCRQGKAPTPSCWRLQNI*VHWQSS
Trigger: ACTGCTCTGCCAGTGCACCCAGATGTTCTGGAGCCG...CCAGCAGGATGGCGTGGGAGCCTTCCCTTGCCTGCACATGGTCTGAGGGGATCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
CDS-3UTR GCA 90 bp ATTCTGGCCCCTGCCCACCTCACTGCTGAAGAGTCACAGAGTGGCCTCCCAAATCGGCGTTTGCGAAGCTaGCGCCTCTGCTGTCTGGGG +
Preference number: 4 (lower is better)
Translates to: ILAPAHLTAEESQSGLPNRRLRS*RLCCLG
Trigger: CCCCAGACAGCAGAGGCGGCAGCTTCGCAAACGCCG...ATTTGGGAGGCCACTCTGTGACTCTTCAGCAGTGAGGTGGGCAGGGGCCAGAAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp CGATCCCCTCAGACCATGTGCAGGCAAGGGAAGGCTCCCACGCCATCCTGCTGGGTCACGTGGACATGGTaGTCCCCAGTGTACACTTGC +
Preference number: 4 (lower is better)
Translates to: RSPQTMCRQGKAPTPSCWVTWTW*SPVYTC
Trigger: GCAAGTGTACACTGGGGACCACCATGTCCACGTGAC...CCAGCAGGATGGCGTGGGAGCCTTCCCTTGCCTGCACATGGTCTGAGGGGATCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp ATTCTGGCCCCTGCCCACCTCACTGCTGAAGAGTCACAGAGTGGCCTCCCAAATACTCAGAGGCCTCGCTaGAGCAGCAGGCGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: ILAPAHLTAEESQSGLPNTQRPR*SSRRAL
Trigger: CAGAGCACGCCTGCTGCTTCAGCGAGGCCTCTGAGT...ATTTGGGAGGCCACTCTGTGACTCTTCAGCAGTGAGGTGGGCAGGGGCCAGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp GGAGACTCGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTGCGTGCTCTGCCAGGTaGGTAAAGTCAGACCGGCGC +
Preference number: 4 (lower is better)
Translates to: GDSMASLTAQTQSHPATCACSAR*VKSDRR
Trigger: GCGCCGGTCTGACTTTACTCACCTGGCAGAGCACGC...ACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCGAGTCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp ATTCTGGCCCCTGCCCACCTCACTGCTGAAGAGTCACAGAGTGGCCTCCCAAATCTCTGCTCCGATGTCTaGTCCAAGGCTGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: ILAPAHLTAEESQSGLPNLCSDV*SKAEAR
Trigger: CCTGGCCTCAGCCTTGGAGCAGACATCGGAGCAGAG...ATTTGGGAGGCCACTCTGTGACTCTTCAGCAGTGAGGTGGGCAGGGGCCAGAAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp CATCATCCACTAGTTTGCCGAGCACCTAAACCCCCATCTGCACTGGAGCACACACGGCGTTTGCGAAGCTaGCGCCTCTGCTGTCTGGGG +
Preference number: 4 (lower is better)
Translates to: HHPLVCRAPKPPSALEHTRRLRS*RLCCLG
Trigger: CCCCAGACAGCAGAGGCGGCAGCTTCGCAAACGCCG...TGTGTGCTCCAGTGCAGATGGGGGTTTAGGTGCTCGGCAAACTAGTGGATGATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp GGAGACTCGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTCCGTCCTCGGCGTTTaGGAAGCTGCCGCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: GDSMASLTAQTQSHPATCSVLGV*EAAASA
Trigger: AGCAGAGGCGGCAGCTTCGCAAACGCCGAGGACGGA...ACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCGAGTCTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp GGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACTGGCTCCGTCCTCGGCGTTTaGGAAGCTGCCGCCTCTGCT +
Preference number: 4 (lower is better)
Translates to: GQPYCTDTIPSSNVFPTGSVLGV*EAAASA
Trigger: AGCAGAGGCGGCAGCTTCGCAAACGCCGAGGACGGA...GCCAGTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp CGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACGCCGCCTCTGCTGTCTaGGGCTCAGGGCCATCTCCT +
Preference number: 4 (lower is better)
Translates to: RWPALLHRHNPIQQRVSNAASAV*GSGPSP
Trigger: AGGAGATGGCCCTGAGCCCCAGACAGCAGAGGCGGC...GTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp TTGTTATGGTCAGCTGATACATTCTCAGCCACCGAGCTTCAGGCTTCCCTTTGCCGAAGCTGCCGCCTCTaGTGTCTGGGGCTCAGGGCC +
Preference number: 4 (lower is better)
Translates to: LLWSADTFSATELQASLCRSCRL*CLGLRA
Trigger: GGCCCTGAGCCCCAGACAGCAGAGGCGGCAGCTTCG...GCAAAGGGAAGCCTGAAGCTCGGTGGCTGAGAATGTATCAGCTGACCATAACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp ACAGTAGAAATGTGTTCCACTGGCCACTGCAGGAGCAGACGGCACACACACATCGCACTGAGAGCTGGGTaGCGTTTGGCCACCACCGTG +
Preference number: 4 (lower is better)
Translates to: TVEMCSTGHCRSRRHTHIALRAG*RLATTV
Trigger: CACGGTGGTGGCCAAACGGCACCCAGCTCTCAGTGC...GATGTGTGTGTGCCGTCTGCTCCTGCAGTGGCCAGTGGAACACATTTCTACTGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp GCAGGTGCTCCAGATGACACTTTTGGGAAATGTGGCTCTTCCCCAGCAGCTCCAGCTTCTGCTGAAGGCTaGCAGCCACCTCGGACGTCA +
Preference number: 4 (lower is better)
Translates to: AGAPDDTFGKCGSSPAAPASAEG*QPPRTS
Trigger: TGACGTCCGAGGTGGCTGCCAGCCTTCAGCAGAAGC...TGGAGCTGCTGGGGAAGAGCCACATTTCCCAAAAGTGTCATCTGGAGCACCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp GTGGCCTCCCAAATGAATGTAGCTCTCGGGGGAACACACTGCTTACACTCCCTGAGGAGGCTTCTGAGCTaGGATGGCCGGCTCCAGAAC +
Preference number: 4 (lower is better)
Translates to: VASQMNVALGGTHCLHSLRRLLS*DGRLQN
Trigger: GTTCTGGAGCCGGCCATCCCAGCTCAGAAGCCTCCT...CAGGGAGTGTAAGCAGTGTGTTCCCCCGAGAGCTACATTCATTTGGGAGGCCAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp ATTCTGGCCCCTGCCCACCTCACTGCTGAAGAGTCACAGAGTGGCCTCCCAAATGGCTTCATCCAGACTTaGCTCAGAGGCCTCGCTGAA +
Preference number: 4 (lower is better)
Translates to: ILAPAHLTAEESQSGLPNGFIQT*LRGLAE
Trigger: TTCAGCGAGGCCTCTGAGTCAAGTCTGGATGAAGCC...ATTTGGGAGGCCACTCTGTGACTCTTCAGCAGTGAGGTGGGCAGGGGCCAGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp CAACACACTCAGCTGATACAAAAAGAGAGAGCTGTGTCAAGCACAGCCCTGAATCCTTCCGCCGGCGCCTaGGGGGTCGACAAGGTGCGT +
Preference number: 4 (lower is better)
Translates to: QHTQLIQKERAVSSTALNPSAGA*GVDKVR
Trigger: ACGCACCTTGTCGACCCCTCAGGCGCCGGCGGAAGG...ATTCAGGGCTGTGCTTGACACAGCTCTCTCTTTTTGTATCAGCTGAGTGTGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp ATTCTGGCCCCTGCCCACCTCACTGCTGAAGAGTCACAGAGTGGCCTCCCAAATTCTACTTCAGTGCAGTaGTCAGGAGCCCACTTGGGC +
Preference number: 4 (lower is better)
Translates to: ILAPAHLTAEESQSGLPNSTSVQ*SGAHLG
Trigger: GCCCAAGTGGGCTCCTGATCACTGCACTGAAGTAGA...ATTTGGGAGGCCACTCTGTGACTCTTCAGCAGTGAGGTGGGCAGGGGCCAGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp CTGGCCCCTGCCCACCTCACTGCTGAAGAGTCACAGAGTGGCCTCCCAAATGAAGGTGAGCACCTTCGATaGGAAGCATCAGCAAGAACG +
Preference number: 4 (lower is better)
Translates to: LAPAHLTAEESQSGLPNEGEHLR*EASART
Trigger: CGTTCTTGCTGATGCTTCTCATCGAAGGTGCTCACC...TTCATTTGGGAGGCCACTCTGTGACTCTTCAGCAGTGAGGTGGGCAGGGGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp ACAGTAGAAATGTGTTCCACTGGCCACTGCAGGAGCAGACGGCACACACACATCCTCTGCTCCGATGTCTaGTCCAAGGCTGAGGCCAGG +
Preference number: 4 (lower is better)
Translates to: TVEMCSTGHCRSRRHTHILCSDV*SKAEAR
Trigger: CCTGGCCTCAGCCTTGGAGCAGACATCGGAGCAGAG...GATGTGTGTGTGCCGTCTGCTCCTGCAGTGGCCAGTGGAACACATTTCTACTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp CTGGCCCCTGCCCACCTCACTGCTGAAGAGTCACAGAGTGGCCTCCCAAATGAATCACCAAGCTTGCTCTaGTCCGATGTCTGCTCCAAG +
Preference number: 4 (lower is better)
Translates to: LAPAHLTAEESQSGLPNESPSLL*SDVCSK
Trigger: CTTGGAGCAGACATCGGAGCAGAGCAAGCTTGGTGA...TTCATTTGGGAGGCCACTCTGTGACTCTTCAGCAGTGAGGTGGGCAGGGGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp CTGGCCCCTGCCCACCTCACTGCTGAAGAGTCACAGAGTGGCCTCCCAAATGAAGATCAGGAGCCCACTTaGGCAGAAGGTTATGGACAG +
Preference number: 4 (lower is better)
Translates to: LAPAHLTAEESQSGLPNEDQEPT*AEGYGQ
Trigger: CTGTCCATAACCTTCTGCCCAAGTGGGCTCCTGATC...TTCATTTGGGAGGCCACTCTGTGACTCTTCAGCAGTGAGGTGGGCAGGGGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CAA 72 bp CACAGCCCTGAATGGCAGGTGCTCCAGATGACACTTTaGGGAAATGTGGCTCTTCCCCAGCAGCTCCAGGCA +
Preference number: 4 (lower is better)
Translates to: HSPEWQVLQMTL*GNVALPQQLQA
Trigger: TGCCTGGAGCTGCTGGGGAAGAGCCACATTTCCCAAAAGTGTCATCTGGAGCACCTGCCATTCAGGGCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp AGGGTTTGGTGTTACTCTTCTCATCCTGCAATCTCTTTCTGCACCCCCTCTACCACTCAGAGGCCTCGCTaGAGCAGCAGGCGTGCTCTG +
Preference number: 4 (lower is better)
Translates to: RVWCYSSHPAISFCTPSTTQRPR*SSRRAL
Trigger: CAGAGCACGCCTGCTGCTTCAGCGAGGCCTCTGAGT...GGTAGAGGGGGTGCAGAAAGAGATTGCAGGATGAGAAGAGTAACACCAAACCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp GGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACTGGCGGCTTCATCCAGACTTaGCTCAGAGGCCTCGCTGAA +
Preference number: 4 (lower is better)
Translates to: GQPYCTDTIPSSNVFPTGGFIQT*LRGLAE
Trigger: TTCAGCGAGGCCTCTGAGTCAAGTCTGGATGAAGCC...GCCAGTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp GCAGGTGCTCCAGATGACACTTTTGGGAAATGTGGCTCTTCCCCAGCAGCTCCAGTCCTTCATCATTGGTaGAGAGCCCCGTGTCACTGC +
Preference number: 4 (lower is better)
Translates to: AGAPDDTFGKCGSSPAAPVLHHW*RAPCHC
Trigger: GCAGTGACACGGGGCTCTTCACCAATGATGAAGGAC...TGGAGCTGCTGGGGAAGAGCCACATTTCCCAAAAGTGTCATCTGGAGCACCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp GAGGGGATGGAGACTCGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGACAGCTCACCAAGCTTaGTCTGCTCCGATGTCTGCT +
Preference number: 4 (lower is better)
Translates to: EGMETRWPALLHRHNPIQTAHQA*SAPMSA
Trigger: AGCAGACATCGGAGCAGAGCAAGCTTGGTGAGCTGT...CTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCGAGTCTCCATCCCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp TTTGCCGAGCACCTAAACCCCCATCTGCACTGGAGCACACAGACCTCTGGGCCCTCCTTTCTACTTCAGTaGAGTGATCAGGAGCCCACT +
Preference number: 4 (lower is better)
Translates to: FAEHLNPHLHWSTQTSGPSFLLQ*SDQEPT
Trigger: AGTGGGCTCCTGATCACTGCACTGAAGTAGAAAGGA...GGGCCCAGAGGTCTGTGTGCTCCAGTGCAGATGGGGGTTTAGGTGCTCGGCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp ATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACTGGCTTCTGCTGAAGGCTaGCAGCCACCTCGGACGTCA +
Preference number: 4 (lower is better)
Translates to: MASLTAQTQSHPATCFQLASAEG*QPPRTS
Trigger: TGACGTCCGAGGTGGCTGCCAGCCTTCAGCAGAAGC...CAGTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp TCATCAGCTCTGAGCAAAGAGCGACTCAGGCAGGGGATGACACTAATGAAGCTCAGGAGGCTTCTGAGCTaGGATGGCCGGCTCCAGAAC +
Preference number: 4 (lower is better)
Translates to: SSALSKERLRQGMTLMKLRRLLS*DGRLQN
Trigger: GTTCTGGAGCCGGCCATCCCAGCTCAGAAGCCTCCT...GAGCTTCATTAGTGTCATCCCCTGCCTGAGTCGCTCTTTGCTCAGAGCTGATGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp CGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACCGGCTCCAGAACATCTaGGTGCACTGGACTAGGGCT +
Preference number: 4 (lower is better)
Translates to: RWPALLHRHNPIQQRVSNRLQNI*VHWTRA
Trigger: AGCCCTAGTCCAGTGCACCCAGATGTTCTGGAGCCG...GTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp TCATCAGCTCTGAGCAAAGAGCGACTCAGGCAGGGGATGACACTAATGAAGCTCCAGCCCATGGCCAGATaGGGTCCAGGGAGTATTCTC +
Preference number: 4 (lower is better)
Translates to: SSALSKERLRQGMTLMKLQPMAR*GPGSIL
Trigger: GAGAATACTCCCTGGACCTCATCTGGCCATGGGCTG...GAGCTTCATTAGTGTCATCCCCTGCCTGAGTCGCTCTTTGCTCAGAGCTGATGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp GAGTCACAGAGTGGCCTCCCAAATGAATGTAGCTCTCGGGGGAACACACTGCTTAGTCCGATTCTCTGCTaGTTCACACAGCCCATGGCC +
Preference number: 4 (lower is better)
Translates to: ESQSGLPNECSSRGNTLLSPILC*FTQPMA
Trigger: GGCCATGGGCTGTGTGAATCAGCAGAGAATCGGACT...AAGCAGTGTGTTCCCCCGAGAGCTACATTCATTTGGGAGGCCACTCTGTGACTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp CACAGTCAACACACTCAGCTGATACAAAAAGAGAGAGCTGTGTCAAGCACAGCCTTCTCCGCCCCTTCCTaGGGCAACGAGCTGCAGCTC +
Preference number: 4 (lower is better)
Translates to: HSQHTQLIQKERAVSSTAFSAPS*GNELQL
Trigger: GAGCTGCAGCTCGTTGCCTCAGGAAGGGGCGGAGAA...GGCTGTGCTTGACACAGCTCTCTCTTTTTGTATCAGCTGAGTGTGTTGACTGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp GTGGCCTCCCAAATGAATGTAGCTCTCGGGGGAACACACTGCTTACACTCCCTGCAGCGGGATAGACGCTaGTTCTTGGCAGACTTGAAC +
Preference number: 4 (lower is better)
Translates to: VASQMNVALGGTHCLHSLQRDRR*FLADLN
Trigger: GTTCAAGTCTGCCAAGAAGCAGCGTCTATCCCGCTG...CAGGGAGTGTAAGCAGTGTGTTCCCCCGAGAGCTACATTCATTTGGGAGGCCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp CAACACACTCAGCTGATACAAAAAGAGAGAGCTGTGTCAAGCACAGCCCTGAATGCCGCCTCTGCTGTCTaGGGCTCAGGGCCATCTCCT +
Preference number: 4 (lower is better)
Translates to: QHTQLIQKERAVSSTALNAASAV*GSGPSP
Trigger: AGGAGATGGCCCTGAGCCCCAGACAGCAGAGGCGGC...ATTCAGGGCTGTGCTTGACACAGCTCTCTCTTTTTGTATCAGCTGAGTGTGTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp GCAGGTGCTCCAGATGACACTTTTGGGAAATGTGGCTCTTCCCCAGCAGCTCCACTCGGCAGTCCTTGGTaGCTTCATCCAGACTTGACT +
Preference number: 4 (lower is better)
Translates to: AGAPDDTFGKCGSSPAAPLGSPW*LHPDLT
Trigger: AGTCAAGTCTGGATGAAGCCACCAAGGACTGCCGAG...TGGAGCTGCTGGGGAAGAGCCACATTTCCCAAAAGTGTCATCTGGAGCACCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp CGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACGATTCACACAGCCCATaGCCAGATGAGGTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: RWPALLHRHNPIQQRVSNDSHSP*PDEVQG
Trigger: TCCCTGGACCTCATCTGGCCATGGGCTGTGTGAATC...GTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp CATCATCCACTAGTTTGCCGAGCACCTAAACCCCCATCTGCACTGGAGCACACAGATTCACACAGCCCATaGCCAGATGAGGTCCAGGGA +
Preference number: 4 (lower is better)
Translates to: HHPLVCRAPKPPSALEHTDSHSP*PDEVQG
Trigger: TCCCTGGACCTCATCTGGCCATGGGCTGTGTGAATC...TGTGTGCTCCAGTGCAGATGGGGGTTTAGGTGCTCGGCAAACTAGTGGATGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp GGAGACTCGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTCCTCTTAATGTCACGTaGACATGGTGGTCCCCAGTG +
Preference number: 4 (lower is better)
Translates to: GDSMASLTAQTQSHPATCPLNVT*TWWSPV
Trigger: CACTGGGGACCACCATGTCCACGTGACATTAAGAGG...ACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCGAGTCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp ACAGTAGAAATGTGTTCCACTGGCCACTGCAGGAGCAGACGGCACACACACATCCTGGAGGAAAGGCAGTaGCTTTCTCTGCTGCAGAGG +
Preference number: 4 (lower is better)
Translates to: TVEMCSTGHCRSRRHTHILEERQ*LSLLQR
Trigger: CCTCTGCAGCAGAGAAAGCCACTGCCTTTCCTCCAG...GATGTGTGTGTGCCGTCTGCTCCTGCAGTGGCCAGTGGAACACATTTCTACTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp ACACACCACATAGAAAGGCATGTCAAAAAGACATCGTTTCTTCCTAAACCATGGCCTTCCGCCGGCGCCTaGGGGGTCGACAAGGTGCGT +
Preference number: 4 (lower is better)
Translates to: THHIERHVKKTSFLPKPWPSAGA*GVDKVR
Trigger: ACGCACCTTGTCGACCCCTCAGGCGCCGGCGGAAGG...CCATGGTTTAGGAAGAAACGATGTCTTTTTGACATGCCTTTCTATGTGGTGTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp CGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACGGTGAGCACCTTCGATaGGAAGCATCAGCAAGAACG +
Preference number: 4 (lower is better)
Translates to: RWPALLHRHNPIQQRVSNGEHLR*EASART
Trigger: CGTTCTTGCTGATGCTTCTCATCGAAGGTGCTCACC...GTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp TCTCTTTCTGCACCCCCTCTACCATTTTTGTTATGGTCAGCTGATACATTCTCACGAAGCTGCCGCCTCTaGTGTCTGGGGCTCAGGGCC +
Preference number: 4 (lower is better)
Translates to: SLSAPPLPFLLWSADTFSRSCRL*CLGLRA
Trigger: GGCCCTGAGCCCCAGACAGCAGAGGCGGCAGCTTCG...TGAGAATGTATCAGCTGACCATAACAAAAATGGTAGAGGGGGTGCAGAAAGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp CATCATCCACTAGTTTGCCGAGCACCTAAACCCCCATCTGCACTGGAGCACACACAGCGGGATAGACGCTaGTTCTTGGCAGACTTGAAC +
Preference number: 4 (lower is better)
Translates to: HHPLVCRAPKPPSALEHTQRDRR*FLADLN
Trigger: GTTCAAGTCTGCCAAGAAGCAGCGTCTATCCCGCTG...TGTGTGCTCCAGTGCAGATGGGGGTTTAGGTGCTCGGCAAACTAGTGGATGATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp AGACTCGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCAGTGTACACTTGCCTaGCTGGCAGAGCAGTGTGCA +
Preference number: 4 (lower is better)
Translates to: RLDGQPYCTDTIPSSNVFQCTLA*LAEQCA
Trigger: TGCACACTGCTCTGCCAGGCAGGCAAGTGTACACTG...AAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCGAGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp ACAGTAGAAATGTGTTCCACTGGCCACTGCAGGAGCAGACGGCACACACACATCCTCGGCAGTCCTTGGTaGCTTCATCCAGACTTGACT +
Preference number: 4 (lower is better)
Translates to: TVEMCSTGHCRSRRHTHILGSPW*LHPDLT
Trigger: AGTCAAGTCTGGATGAAGCCACCAAGGACTGCCGAG...GATGTGTGTGTGCCGTCTGCTCCTGCAGTGGCCAGTGGAACACATTTCTACTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp GGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACTGGCCTCATAGCTCCAATCTaGCACTTTCAGCTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: GQPYCTDTIPSSNVFPTGLIAPI*HFQLLL
Trigger: CAGCAGAAGCTGAAAGTGTCAGATTGGAGCTATGAG...GCCAGTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp AGACTCGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTGCTTCTTGGCAGACTTaGACCTGCAGCCTCTCTCAT +
Preference number: 4 (lower is better)
Translates to: RLDGQPYCTDTIPSSNVFASWQT*TCSLSH
Trigger: ATGAGAGAGGCTGCAGGTTCAAGTCTGCCAAGAAGC...AAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCGAGTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp ATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACTGCCATGGTATCCTCTTTaGGCTGGCCGGGAAGGTAAA +
Preference number: 4 (lower is better)
Translates to: MASLTAQTQSHPATCFQLPWYPL*AGREGK
Trigger: TTTACCTTCCCGGCCAGCTCAAAGAGGATACCATGG...CAGTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp GGATTTCATCAGCGACATGAAAAGCTCTACACAGAAGGTACGCAAAAGCTGTTGTTCTCCGCCCCTTCCTaGGGCAACGAGCTGCAGCTC +
Preference number: 4 (lower is better)
Translates to: GFHQRHEKLYTEGTQKLLFSAPS*GNELQL
Trigger: GAGCTGCAGCTCGTTGCCTCAGGAAGGGGCGGAGAA...CAACAGCTTTTGCGTACCTTCTGTGTAGAGCTTTTCATGTCGCTGATGAAATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp GGATTTCATCAGCGACATGAAAAGCTCTACACAGAAGGTACGCAAAAGCTGTTGGCACTGAGAGCTGGGTaGCGTTTGGCCACCACCGTG +
Preference number: 4 (lower is better)
Translates to: GFHQRHEKLYTEGTQKLLALRAG*RLATTV
Trigger: CACGGTGGTGGCCAAACGGCACCCAGCTCTCAGTGC...CAACAGCTTTTGCGTACCTTCTGTGTAGAGCTTTTCATGTCGCTGATGAAATCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp ATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACTGGAGGGGTCGACAAGGTaGGTTTTCCGTAAAGGAGTC +
Preference number: 4 (lower is better)
Translates to: MASLTAQTQSHPATCFQLEGSTR*VFRKGV
Trigger: GACTCCTTTACGGAAAACGCACCTTGTCGACCCCTC...CAGTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp GGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACTGGCTCCTTTCTACTTCAGTaGAGTGATCAGGAGCCCACT +
Preference number: 4 (lower is better)
Translates to: GQPYCTDTIPSSNVFPTGSFLLQ*SDQEPT
Trigger: AGTGGGCTCCTGATCACTGCACTGAAGTAGAAAGGA...GCCAGTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp CGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACTCCAGAACATCTGGGTaGACTGGACTAGGGCTAGAA +
Preference number: 4 (lower is better)
Translates to: RWPALLHRHNPIQQRVSNSRTSG*TGLGLE
Trigger: TTCTAGCCCTAGTCCAGTGCACCCAGATGTTCTGGA...GTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp ACAGTAGAAATGTGTTCCACTGGCCACTGCAGGAGCAGACGGCACACACACATCTTGGGCAGAAGGTTATaGACAGTGAATCCGGGGACA +
Preference number: 4 (lower is better)
Translates to: TVEMCSTGHCRSRRHTHILGRRL*TVNPGT
Trigger: TGTCCCCGGATTCACTGTCCATAACCTTCTGCCCAA...GATGTGTGTGTGCCGTCTGCTCCTGCAGTGGCCAGTGGAACACATTTCTACTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp AGGGTTTGGTGTTACTCTTCTCATCCTGCAATCTCTTTCTGCACCCCCTCTACCACACCCATTGGTTCCTaGGCTAGAGCTGCAGCCAGA +
Preference number: 4 (lower is better)
Translates to: RVWCYSSHPAISFCTPSTTPIGS*ARAAAR
Trigger: TCTGGCTGCAGCTCTAGCCCAGGAACCAATGGGTGT...GGTAGAGGGGGTGCAGAAAGAGATTGCAGGATGAGAAGAGTAACACCAAACCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp GACAGGGTTTGGTGTTACTCTTCTCATCCTGCAATCTCTTTCTGCACCCCCTCTGCTTCTTGGCAGACTTaGACCTGCAGCCTCTCTCAT +
Preference number: 4 (lower is better)
Translates to: DRVWCYSSHPAISFCTPSASWQT*TCSLSH
Trigger: ATGAGAGAGGCTGCAGGTTCAAGTCTGCCAAGAAGC...AGAGGGGGTGCAGAAAGAGATTGCAGGATGAGAAGAGTAACACCAAACCCTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp ATTGGTTCCTGGGCTAGAGCTGCAGCCAGAATTCTTTTCCTGTGGCATTTTGAACAGCCCATGGCCAGATaGGGTCCAGGGAGTATTCTC +
Preference number: 4 (lower is better)
Translates to: IGSWARAAARILFLWHFEQPMAR*GPGSIL
Trigger: GAGAATACTCCCTGGACCTCATCTGGCCATGGGCTG...TTCAAAATGCCACAGGAAAAGAATTCTGGCTGCAGCTCTAGCCCAGGAACCAAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
CDS-3UTR TCA 90 bp GACAGGGTTTGGTGTTACTCTTCTCATCCTGCAATCTCTTTCTGCACCCCCTCTCCATGGTATCCTCTTTaGGCTGGCCGGGAAGGTAAA +
Preference number: 4 (lower is better)
Translates to: DRVWCYSSHPAISFCTPSPWYPL*AGREGK
Trigger: TTTACCTTCCCGGCCAGCTCAAAGAGGATACCATGG...AGAGGGGGTGCAGAAAGAGATTGCAGGATGAGAAGAGTAACACCAAACCCTGTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp CACAGTCAACACACTCAGCTGATACAAAAAGAGAGAGCTGTGTCAAGCACAGCCAGAGCAGTGTGCAGGTaGGCACCTTCGATGAGAAGC +
Preference number: 4 (lower is better)
Translates to: HSQHTQLIQKERAVSSTARAVCR*APSMRS
Trigger: GCTTCTCATCGAAGGTGCTCACCTGCACACTGCTCT...GGCTGTGCTTGACACAGCTCTCTCTTTTTGTATCAGCTGAGTGTGTTGACTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp ACAGTAGAAATGTGTTCCACTGGCCACTGCAGGAGCAGACGGCACACACACATCGCTAGAAAAAGATGCTaGGGCCACAGGTTTCCGTTT +
Preference number: 4 (lower is better)
Translates to: TVEMCSTGHCRSRRHTHIARKRC*GHRFPF
Trigger: AAACGGAAACCTGTGGCCTCAGCATCTTTTTCTAGC...GATGTGTGTGTGCCGTCTGCTCCTGCAGTGGCCAGTGGAACACATTTCTACTGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp CAGGAACAAAGACACAGCTGCCAAGGAGAGGCAGCTCTAAGGCAGCAGCTGAAGTTTCCTGTGGCATTTTaGAAAACGTGGCTGGAGGAA +
Preference number: 4 (lower is better)
Translates to: QEQRHSCQGEAALRQQLKFPVAF*KTWLEE
Trigger: TTCCTCCAGCCACGTTTTTCAAAATGCCACAGGAAA...CTTCAGCTGCTGCCTTAGAGCTGCCTCTCCTTGGCAGCTGTGTCTTTGTTCCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp CAACACACTCAGCTGATACAAAAAGAGAGAGCTGTGTCAAGCACAGCCCTGAATGGCAGTGGCTTTCTCTaGTGCAGAGGTCCCGTCCAA +
Preference number: 4 (lower is better)
Translates to: QHTQLIQKERAVSSTALNGSGFL*CRGPVQ
Trigger: TTGGACGGGACCTCTGCAGCAGAGAAAGCCACTGCC...ATTCAGGGCTGTGCTTGACACAGCTCTCTCTTTTTGTATCAGCTGAGTGTGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp GGATTTCATCAGCGACATGAAAAGCTCTACACAGAAGGTACGCAAAAGCTGTTGGGGTCACTGATGGTATaGCCGATCCTCTCCGTCCCC +
Preference number: 4 (lower is better)
Translates to: GFHQRHEKLYTEGTQKLLGSLMV*PILSVP
Trigger: GGGGACGGAGAGGATCGGCCATACCATCAGTGACCC...CAACAGCTTTTGCGTACCTTCTGTGTAGAGCTTTTCATGTCGCTGATGAAATCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp CAACACACTCAGCTGATACAAAAAGAGAGAGCTGTGTCAAGCACAGCCCTGAATAGTCCGATTCTCTGCTaGTTCACACAGCCCATGGCC +
Preference number: 4 (lower is better)
Translates to: QHTQLIQKERAVSSTALNSPILC*FTQPMA
Trigger: GGCCATGGGCTGTGTGAATCAGCAGAGAATCGGACT...ATTCAGGGCTGTGCTTGACACAGCTCTCTCTTTTTGTATCAGCTGAGTGTGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp GACAGGGTTTGGTGTTACTCTTCTCATCCTGCAATCTCTTTCTGCACCCCCTCTGAAGGTTATGGACAGTaGATCCGGGGACACATTCTC +
Preference number: 4 (lower is better)
Translates to: DRVWCYSSHPAISFCTPSEGYGQ*IRGHIL
Trigger: GAGAATGTGTCCCCGGATTCACTGTCCATAACCTTC...AGAGGGGGTGCAGAAAGAGATTGCAGGATGAGAAGAGTAACACCAAACCCTGTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp CAACACACTCAGCTGATACAAAAAGAGAGAGCTGTGTCAAGCACAGCCCTGAATTCTACTTCAGTGCAGTaGTCAGGAGCCCACTTGGGC +
Preference number: 4 (lower is better)
Translates to: QHTQLIQKERAVSSTALNSTSVQ*SGAHLG
Trigger: GCCCAAGTGGGCTCCTGATCACTGCACTGAAGTAGA...ATTCAGGGCTGTGCTTGACACAGCTCTCTCTTTTTGTATCAGCTGAGTGTGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp CACAGTCAACACACTCAGCTGATACAAAAAGAGAGAGCTGTGTCAAGCACAGCCCTTCTCGGCAGTCCTTaGTGGCTTCATCCAGACTTG +
Preference number: 4 (lower is better)
Translates to: HSQHTQLIQKERAVSSTALLGSP*WLHPDL
Trigger: CAAGTCTGGATGAAGCCACCAAGGACTGCCGAGAAG...GGCTGTGCTTGACACAGCTCTCTCTTTTTGTATCAGCTGAGTGTGTTGACTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CAA 72 bp CAGGAGCAGACGGCACACACACATCCACTTTCACCTTaGAACTATGTAACAGTGCCACAGTCCCTGTCTTCT +
Preference number: 4 (lower is better)
Translates to: QEQTAHTHPLSP*NYVTVPQSLSS
Trigger: AGAAGACAGGGACTGTGGCACTGTTACATAGTTCAAAGGTGAAAGTGGATGTGTGTGTGCCGTCTGCTCCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp TTTTGTTATGGTCAGCTGATACATTCTCAGCCACCGAGCTTCAGGCTTCCCTTTTCACCAAGCTTGCTCTaGTCCGATGTCTGCTCCAAG +
Preference number: 4 (lower is better)
Translates to: FCYGQLIHSQPPSFRLPFSPSLL*SDVCSK
Trigger: CTTGGAGCAGACATCGGAGCAGAGCAAGCTTGGTGA...AAAGGGAAGCCTGAAGCTCGGTGGCTGAGAATGTATCAGCTGACCATAACAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp CATGTCAAAAAGACATCGTTTCTTCCTAAACCATGGCCCCAACTAACCATTACAGGGTCACTGATGGTATaGCCGATCCTCTCCGTCCCC +
Preference number: 4 (lower is better)
Translates to: HVKKTSFLPKPWPQLTITGSLMV*PILSVP
Trigger: GGGGACGGAGAGGATCGGCCATACCATCAGTGACCC...TGTAATGGTTAGTTGGGGCCATGGTTTAGGAAGAAACGATGTCTTTTTGACATG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp ACAGTAGAAATGTGTTCCACTGGCCACTGCAGGAGCAGACGGCACACACACATCGTAAAGAGGGGAGAGTaGATTAAACTGATTCCGTTC +
Preference number: 4 (lower is better)
Translates to: TVEMCSTGHCRSRRHTHIVKRGE*IKLIPF
Trigger: GAACGGAATCAGTTTAATCCACTCTCCCCTCTTTAC...GATGTGTGTGTGCCGTCTGCTCCTGCAGTGGCCAGTGGAACACATTTCTACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp TCTCTTTCTGCACCCCCTCTACCATTTTTGTTATGGTCAGCTGATACATTCTCAGTACACTTGCCTGCCTaGCAGAGCAGTGTGCAGGTG +
Preference number: 4 (lower is better)
Translates to: SLSAPPLPFLLWSADTFSVHLPA*QSSVQV
Trigger: CACCTGCACACTGCTCTGCCAGGCAGGCAAGTGTAC...TGAGAATGTATCAGCTGACCATAACAAAAATGGTAGAGGGGGTGCAGAAAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp GGATTTCATCAGCGACATGAAAAGCTCTACACAGAAGGTACGCAAAAGCTGTTGGAGGGGTCGACAAGGTaGGTTTTCCGTAAAGGAGTC +
Preference number: 4 (lower is better)
Translates to: GFHQRHEKLYTEGTQKLLEGSTR*VFRKGV
Trigger: GACTCCTTTACGGAAAACGCACCTTGTCGACCCCTC...CAACAGCTTTTGCGTACCTTCTGTGTAGAGCTTTTCATGTCGCTGATGAAATCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp GATGTCAGAACCATGGCACTTGGCTTCATTAATTCTGATATGAAATGCATGAGCTCCCCAGTGTACACTTaGCTGCCTGGCAGAGCAGTG +
Preference number: 4 (lower is better)
Translates to: DVRTMALGFINSDMKCMSSPVYT*LPGRAV
Trigger: CACTGCTCTGCCAGGCAGGCAAGTGTACACTGGGGA...GCTCATGCATTTCATATCAGAATTAATGAAGCCAAGTGCCATGGTTCTGACATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp ATTGGTTCCTGGGCTAGAGCTGCAGCCAGAATTCTTTTCCTGTGGCATTTTGAATTGGGCAGAAGGTTATaGACAGTGAATCCGGGGACA +
Preference number: 4 (lower is better)
Translates to: IGSWARAAARILFLWHFELGRRL*TVNPGT
Trigger: TGTCCCCGGATTCACTGTCCATAACCTTCTGCCCAA...TTCAAAATGCCACAGGAAAAGAATTCTGGCTGCAGCTCTAGCCCAGGAACCAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
CDS-3UTR CCA 90 bp TCATCAGCTCTGAGCAAAGAGCGACTCAGGCAGGGGATGACACTAATGAAGCTCAAGGTAAAAGGAACGTaGGGTCTGAGAGTTTATCCA +
Preference number: 4 (lower is better)
Translates to: SSALSKERLRQGMTLMKLKVKGT*GLRVYP
Trigger: TGGATAAACTCTCAGACCCCACGTTCCTTTTACCTT...GAGCTTCATTAGTGTCATCCCCTGCCTGAGTCGCTCTTTGCTCAGAGCTGATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp TTTTGTTATGGTCAGCTGATACATTCTCAGCCACCGAGCTTCAGGCTTCCCTTTCTCATAGCTCCAATCTaGCACTTTCAGCTTCTGCTG +
Preference number: 4 (lower is better)
Translates to: FCYGQLIHSQPPSFRLPFLIAPI*HFQLLL
Trigger: CAGCAGAAGCTGAAAGTGTCAGATTGGAGCTATGAG...AAAGGGAAGCCTGAAGCTCGGTGGCTGAGAATGTATCAGCTGACCATAACAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp ACACACCACATAGAAAGGCATGTCAAAAAGACATCGTTTCTTCCTAAACCATGGGTCCTTCATCATTGGTaGAGAGCCCCGTGTCACTGC +
Preference number: 4 (lower is better)
Translates to: THHIERHVKKTSFLPKPWVLHHW*RAPCHC
Trigger: GCAGTGACACGGGGCTCTTCACCAATGATGAAGGAC...CCATGGTTTAGGAAGAAACGATGTCTTTTTGACATGCCTTTCTATGTGGTGTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp GATGTCAGAACCATGGCACTTGGCTTCATTAATTCTGATATGAAATGCATGAGCAGTGGCTTTCTCTGCTaGAGAGGTCCCGTCCAACCA +
Preference number: 4 (lower is better)
Translates to: DVRTMALGFINSDMKCMSSGFLC*RGPVQP
Trigger: TGGTTGGACGGGACCTCTGCAGCAGAGAAAGCCACT...GCTCATGCATTTCATATCAGAATTAATGAAGCCAAGTGCCATGGTTCTGACATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
3UTR CAA 72 bp ATCCTGCAATCTCTTTCTGCACCCCCTCTACCATTTTaGTTATGGTCAGCTGATACATTCTCAGCCACCGAG +
Preference number: 4 (lower is better)
Translates to: ILQSLSAPPLPF*LWSADTFSATE
Trigger: CTCGGTGGCTGAGAATGTATCAGCTGACCATAACAAAAATGGTAGAGGGGGTGCAGAAAGAGATTGCAGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR TCA 90 bp TCTCAACAAGCCGTCATCAAGACCAGTGAACCAGTTTGGAAATATTTAAAAAGCAGAGCAGTGTGCAGGTaGGCACCTTCGATGAGAAGC +
Preference number: 4 (lower is better)
Translates to: SQQAVIKTSEPVWKYLKSRAVCR*APSMRS
Trigger: GCTTCTCATCGAAGGTGCTCACCTGCACACTGCTCT...GCTTTTTAAATATTTCCAAACTGGTTCACTGGTCTTGATGACGGCTTGTTGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR GCA 90 bp TCTCAACAAGCCGTCATCAAGACCAGTGAACCAGTTTGGAAATATTTAAAAAGCTCCAGAACATCTGGGTaGACTGGCAGAGCAGTGTGC +
Preference number: 4 (lower is better)
Translates to: SQQAVIKTSEPVWKYLKSSRTSG*TGRAVC
Trigger: GCACACTGCTCTGCCAGTGCACCCAGATGTTCTGGA...GCTTTTTAAATATTTCCAAACTGGTTCACTGGTCTTGATGACGGCTTGTTGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
CDS-3UTR CCA 90 bp ACACACCACATAGAAAGGCATGTCAAAAAGACATCGTTTCTTCCTAAACCATGGGATCAGGAGCCCACTTaGGCAGAAGGTTATGGACAG +
Preference number: 4 (lower is better)
Translates to: THHIERHVKKTSFLPKPWDQEPT*AEGYGQ
Trigger: CTGTCCATAACCTTCTGCCCAAGTGGGCTCCTGATC...CCATGGTTTAGGAAGAAACGATGTCTTTTTGACATGCCTTTCTATGTGGTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CCA 90 bp CAACACACTCAGCTGATACAAAAAGAGAGAGCTGTGTCAAGCACAGCCCTGAATAAGGTAAAAGGAACGTaGGGTCTGAGAGTTTATCCA +
Preference number: 4 (lower is better)
Translates to: QHTQLIQKERAVSSTALNKVKGT*GLRVYP
Trigger: TGGATAAACTCTCAGACCCCACGTTCCTTTTACCTT...ATTCAGGGCTGTGCTTGACACAGCTCTCTCTTTTTGTATCAGCTGAGTGTGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
3UTR CAA 72 bp ACACTAAGACTGTACAATACAAAGTTTCAACACCCATaGGTTCCTGGGCTAGAGCTGCAGCCAGAATTCTTT +
Preference number: 4 (lower is better)
Translates to: TLRLYNTKFQHP*VPGLELQPEFF
Trigger: AAAGAATTCTGGCTGCAGCTCTAGCCCAGGAACCAATGGGTGTTGAAACTTTGTATTGTACAGTCTTAGTGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
CDS-3UTR CCA 90 bp GATGTCAGAACCATGGCACTTGGCTTCATTAATTCTGATATGAAATGCATGAGCTTTGAAAAACGTGGCTaGAGGAAAGGCAGTGGCTTT +
Preference number: 4 (lower is better)
Translates to: DVRTMALGFINSDMKCMSFEKRG*RKGSGF
Trigger: AAAGCCACTGCCTTTCCTCCAGCCACGTTTTTCAAA...GCTCATGCATTTCATATCAGAATTAATGAAGCCAAGTGCCATGGTTCTGACATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
3UTR CAA 72 bp CTTTATTTAAGTTGGGTCATTGCTGGGAGAACTGCCTaGTTTAAGAGCCAATGCCATCTGAAATTTTTCATT +
Preference number: 4 (lower is better)
Translates to: LYLSWVIAGRTA*FKSQCHLKFFI
Trigger: AATGAAAAATTTCAGATGGCATTGGCTCTTAAACAAGGCAGTTCTCCCAGCAATGACCCAACTTAAATAAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS GCA 90 bp TCAGACCGGCGCTTCCGTCCTCGGCGTTTGCGAAGCTGCCGCCTCTaGTGTCTGGGGCTCAGGGCCATCTCCTCCCACAGCTCACCAAGC +
Preference number: 5 (lower is better)
Translates to: SDRRFRPRRLRSCRL*CLGLRAISSHSSPS
Trigger: GCTTGGTGAGCTGTGGGAGGAGATGGCCCTGAGCCCCAGACAGCAGAGGCGGCAGCTTCGCAAACGCCGAGGACGGAAGCGCCGGTCTGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 90 bp GGCGCTTCCGTCCTCGGCGTTTGCGAAGCTGCCGCCTCTGCTGTCTaGGGCTCAGGGCCATCTCCTCCCACAGCTCACCAAGCTTGCTCT +
Preference number: 5 (lower is better)
Translates to: GASVLGVCEAAASAV*GSGPSPPTAHQACS
Trigger: AGAGCAAGCTTGGTGAGCTGTGGGAGGAGATGGCCCTGAGCCCCAGACAGCAGAGGCGGCAGCTTCGCAAACGCCGAGGACGGAAGCGCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 90 bp CTTGACTCAGAGGCCTCGCTGAAGCAGCAGGCGTGCTCTGCCAGGTaGGTAAAGTCAGACCGGCGCTTCCGTCCTCGGCGTTTGCGAAGC +
Preference number: 5 (lower is better)
Translates to: LDSEASLKQQACSAR*VKSDRRFRPRRLRS
Trigger: GCTTCGCAAACGCCGAGGACGGAAGCGCCGGTCTGACTTTACTCACCTGGCAGAGCACGCCTGCTGCTTCAGCGAGGCCTCTGAGTCAAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 90 bp GAGCGGAGCCACTTCTCGGCAGTCCTTGGTGGCTTCATCCAGACTTaGCTCAGAGGCCTCGCTGAAGCAGCAGGCGTGCTCTGCCAGGTG +
Preference number: 5 (lower is better)
Translates to: ERSHFSAVLGGFIQT*LRGLAEAAGVLCQV
Trigger: CACCTGGCAGAGCACGCCTGCTGCTTCAGCGAGGCCTCTGAGTCAAGTCTGGATGAAGCCACCAAGGACTGCCGAGAAGTGGCTCCGCTC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 90 bp CTGGGGCTCAGGGCCATCTCCTCCCACAGCTCACCAAGCTTGCTCTaGTCCGATGTCTGCTCCAAGGCTGAGGCCAGGTCATGCACTAGC +
Preference number: 5 (lower is better)
Translates to: LGLRAISSHSSPSLL*SDVCSKAEARSCTS
Trigger: GCTAGTGCATGACCTGGCCTCAGCCTTGGAGCAGACATCGGAGCAGAGCAAGCTTGGTGAGCTGTGGGAGGAGATGGCCCTGAGCCCCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 90 bp GCTGTCTGGGGCTCAGGGCCATCTCCTCCCACAGCTCACCAAGCTTaGTCTGCTCCGATGTCTGCTCCAAGGCTGAGGCCAGGTCATGCA +
Preference number: 5 (lower is better)
Translates to: AVWGSGPSPPTAHQA*SAPMSAPRLRPGHA
Trigger: TGCATGACCTGGCCTCAGCCTTGGAGCAGACATCGGAGCAGAGCAAGCTTGGTGAGCTGTGGGAGGAGATGGCCCTGAGCCCCAGACAGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 90 bp TGCTCATGCTCGCCTCCTTCCCAGGCAGCCTTCTCCGCCCCTTCCTaGGGCAACGAGCTGCAGCTCCTGGCAACCTATTCAGACGACCAT +
Preference number: 5 (lower is better)
Translates to: CSCSPPSQAAFSAPS*GNELQLLATYSDDH
Trigger: ATGGTCGTCTGAATAGGTTGCCAGGAGCTGCAGCTCGTTGCCTCAGGAAGGGGCGGAGAAGGCTGCCTGGGAAGGAGGCGAGCATGAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 90 bp CTCTCTCATAGCTCCAATCTGACACTTTCAGCTTCTGCTGAAGGCTaGCAGCCACCTCGGACGTCACTCGCTTCACCTTCCGCCGGCGCC +
Preference number: 5 (lower is better)
Translates to: LSHSSNLTLSASAEG*QPPRTSLASPSAGA
Trigger: GGCGCCGGCGGAAGGTGAAGCGAGTGACGTCCGAGGTGGCTGCCAGCCTTCAGCAGAAGCTGAAAGTGTCAGATTGGAGCTATGAGAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 90 bp AGGCAGCCTTCTCCGCCCCTTCCTGAGGCAACGAGCTGCAGCTCCTaGCAACCTATTCAGACGACCATGGTATCCTCTTTGAGCTGGCCG +
Preference number: 5 (lower is better)
Translates to: RQPSPPLPEATSCSS*QPIQTTMVSSLSWP
Trigger: CGGCCAGCTCAAAGAGGATACCATGGTCGTCTGAATAGGTTGCCAGGAGCTGCAGCTCGTTGCCTCAGGAAGGGGCGGAGAAGGCTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 90 bp GCTGATGGTAACCAGAAATCTGTCTGCCGGGGGTCACTGATGGTATaGCCGATCCTCTCCGTCCCCAGGCTGCTCATGCTCGCCTCCTTC +
Preference number: 5 (lower is better)
Translates to: ADGNQKSVCRGSLMV*PILSVPRLLMLASF
Trigger: GAAGGAGGCGAGCATGAGCAGCCTGGGGACGGAGAGGATCGGCCATACCATCAGTGACCCCCGGCAGACAGATTTCTGGTTACCATCAGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 90 bp CGTCACTCGCTTCACCTTCCGCCGGCGCCTGAGGGGTCGACAAGGTaGGTTTTCCGTAAAGGAGTCAGACTCGGGCCAAGAATGTTGCTT +
Preference number: 5 (lower is better)
Translates to: RHSLHLPPAPEGSTR*VFRKGVRLGPRMLL
Trigger: AAGCAACATTCTTGGCCCGAGTCTGACTCCTTTACGGAAAACGCACCTTGTCGACCCCTCAGGCGCCGGCGGAAGGTGAAGCGAGTGACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 90 bp CTCCTTCCCAGGCAGCCTTCTCCGCCCCTTCCTGAGGCAACGAGCTaGAGCTCCTGGCAACCTATTCAGACGACCATGGTATCCTCTTTG +
Preference number: 5 (lower is better)
Translates to: LLPRQPSPPLPEATS*SSWQPIQTTMVSSL
Trigger: CAAAGAGGATACCATGGTCGTCTGAATAGGTTGCCAGGAGCTGCAGCTCGTTGCCTCAGGAAGGGGCGGAGAAGGCTGCCTGGGAAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 90 bp AGGCTTCTGAGCTGGGATGGCCGGCTCCAGAACATCTGGGTGCACTaGCAGAGCAGTGTGCAGGTGAGCACCTTCGATGAGAAGCATCAG +
Preference number: 5 (lower is better)
Translates to: RLLSWDGRLQNIWVH*QSSVQVSTFDEKHQ
Trigger: CTGATGCTTCTCATCGAAGGTGCTCACCTGCACACTGCTCTGCCAGTGCACCCAGATGTTCTGGAGCCGGCCATCCCAGCTCAGAAGCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
CDS TCA 90 bp GCCGGCTCCAGAACATCTGGGTGCACTGGCAGAGCAGTGTGCAGGTaGGCACCTTCGATGAGAAGCATCAGCAAGAACGTCCAGGGAGTA +
Preference number: 5 (lower is better)
Translates to: AGSRTSGCTGRAVCR*APSMRSISKNVQGV
Trigger: TACTCCCTGGACGTTCTTGCTGATGCTTCTCATCGAAGGTGCTCACCTGCACACTGCTCTGCCAGTGCACCCAGATGTTCTGGAGCCGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
CDS-3UTR CAA 90 bp AGACTCGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTTTCCGTCCTCGGCGTTaGCGAAGCTGCCGCCTCTGC +
Preference number: 5 (lower is better)
Translates to: RLDGQPYCTDTIPSSNVFFRPRR*RSCRLC
Trigger: GCAGAGGCGGCAGCTTCGCAAACGCCGAGGACGGAA...AAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCGAGTCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp ATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACTGTTCCGTCCTCGGCGTTaGCGAAGCTGCCGCCTCTGC +
Preference number: 5 (lower is better)
Translates to: MASLTAQTQSHPATCFQLFRPRR*RSCRLC
Trigger: GCAGAGGCGGCAGCTTCGCAAACGCCGAGGACGGAA...CAGTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 90 bp CTTCTTGGCAGACTTGAACCTGCAGCCTCTCTCATAGCTCCAATCTaGCACTTTCAGCTTCTGCTGAAGGCTGGCAGCCACCTCGGACGT +
Preference number: 5 (lower is better)
Translates to: LLGRLEPAASLIAPI*HFQLLLKAGSHLGR
Trigger: ACGTCCGAGGTGGCTGCCAGCCTTCAGCAGAAGCTGAAAGTGTCAGATTGGAGCTATGAGAGAGGCTGCAGGTTCAAGTCTGCCAAGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 90 bp GGCCAAGAATGTTGCTTACCCCTAATGATGGCACTGAGAGCTGGGTaGCGTTTGGCCACCACCGTGTCATCAGAGTCACTGAAGTTGGTG +
Preference number: 5 (lower is better)
Translates to: GQECCLPLMMALRAG*RLATTVSSESLKLV
Trigger: CACCAACTTCAGTGACTCTGATGACACGGTGGTGGCCAAACGGCACCCAGCTCTCAGTGCCATCATTAGGGGTAAGCAACATTCTTGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 90 bp CAAGGTGCGTTTTCCGTAAAGGAGTCAGACTCGGGCCAAGAATGTTaGTTACCCCTAATGATGGCACTGAGAGCTGGGTGCCGTTTGGCC +
Preference number: 5 (lower is better)
Translates to: QGAFSVKESDSGQEC*LPLMMALRAGCRLA
Trigger: GGCCAAACGGCACCCAGCTCTCAGTGCCATCATTAGGGGTAAGCAACATTCTTGGCCCGAGTCTGACTCCTTTACGGAAAACGCACCTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 90 bp CTGCTAGTGTCACACTCGGACATGTTCTCGTCAGAGCCGTGCTTCTaGTCTTCGGCTTCGCACTCCATCCTTTCTTTCCTTCCTGGTTGG +
Preference number: 5 (lower is better)
Translates to: LLVSHSDMFSSEPCF*SSASHSILSFLPGW
Trigger: CCAACCAGGAAGGAAAGAAAGGATGGAGTGCGAAGCCGAAGAGCAGAAGCACGGCTCTGACGAGAACATGTCCGAGTGTGACACTAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 90 bp CTCGGGCCAAGAATGTTGCTTACCCCTAATGATGGCACTGAGAGCTaGGTGCCGTTTGGCCACCACCGTGTCATCAGAGTCACTGAAGTT +
Preference number: 5 (lower is better)
Translates to: LGPRMLLTPNDGTES*VPFGHHRVIRVTEV
Trigger: AACTTCAGTGACTCTGATGACACGGTGGTGGCCAAACGGCACCCAGCTCTCAGTGCCATCATTAGGGGTAAGCAACATTCTTGGCCCGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp GGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTTCCAACTGGCACTTCTCGGCAGTCCTaGGTGGCTTCATCCAGACTT +
Preference number: 5 (lower is better)
Translates to: GQPYCTDTIPSSNVFPTGTSRQS*VASSRL
Trigger: AAGTCTGGATGAAGCCACCAAGGACTGCCGAGAAGT...GCCAGTTGGAAACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp GACAGGGTTTGGTGTTACTCTTCTCATCCTGCAATCTCTTTCTGCACCCCCTCTAGAGCTGGGTGCCGTTaGGCCACCACCGTGTCATCA +
Preference number: 5 (lower is better)
Translates to: DRVWCYSSHPAISFCTPSRAGCR*ATTVSS
Trigger: TGATGACACGGTGGTGGCCAAACGGCACCCAGCTCT...AGAGGGGGTGCAGAAAGAGATTGCAGGATGAGAAGAGTAACACCAAACCCTGTC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp GGAGACTCGATGGCCAGCCTTACTGCACAGACACAATCCCATCCAGCAACGTGTTGCTTCTTGGCAGACTaGAACCTGCAGCCTCTCTCA +
Preference number: 5 (lower is better)
Translates to: GDSMASLTAQTQSHPATCCFLAD*NLQPLS
Trigger: TGAGAGAGGCTGCAGGTTCAAGTCTGCCAAGAAGCA...ACACGTTGCTGGATGGGATTGTGTCTGTGCAGTAAGGCTGGCCATCGAGTCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 90 bp GCTGCAGCTCCTGGCAACCTATTCAGACGACCATGGTATCCTCTTTaGGCTGGCCGGGAAGGTAAAAGGAACGTGGGGTCTGAGAGTTTA +
Preference number: 5 (lower is better)
Translates to: AAAPGNLFRRPWYPL*AGREGKRNVGSESL
Trigger: TAAACTCTCAGACCCCACGTTCCTTTTACCTTCCCGGCCAGCTCAAAGAGGATACCATGGTCGTCTGAATAGGTTGCCAGGAGCTGCAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 90 bp CACACACTGCTAGTGTCACACTCGGACATGTTCTCGTCAGAGCCGTaGTTCTGCTCTTCGGCTTCGCACTCCATCCTTTCTTTCCTTCCT +
Preference number: 5 (lower is better)
Translates to: HTLLVSHSDMFSSEP*FCSSASHSILSFLP
Trigger: AGGAAGGAAAGAAAGGATGGAGTGCGAAGCCGAAGAGCAGAAGCACGGCTCTGACGAGAACATGTCCGAGTGTGACACTAGCAGTGTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 90 bp GGTTGGCTTAGGAAAGTCCGATTCTCTGCTGATTCACACAGCCCATaGCCAGATGAGGTCCAGGGAGTATTCTCCTTCCAGCGGGATAGA +
Preference number: 5 (lower is better)
Translates to: GWLRKVRFSADSHSP*PDEVQGVFSFQRDR
Trigger: TCTATCCCGCTGGAAGGAGAATACTCCCTGGACCTCATCTGGCCATGGGCTGTGTGAATCAGCAGAGAATCGGACTTTCCTAAGCCAACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 90 bp GAGAGTTTATCCAGGCCGGAGTCCATCCTTTCTACTTCAGTGCAGTaGTCAGGAGCCCACTTGGGCAGAAGGTTATGGACAGTGAATCCG +
Preference number: 5 (lower is better)
Translates to: ESLSRPESILSTSVQ*SGAHLGRRLWTVNP
Trigger: CGGATTCACTGTCCATAACCTTCTGCCCAAGTGGGCTCCTGATCACTGCACTGAAGTAGAAAGGATGGACTCCGGCCTGGATAAACTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 90 bp GACCATGGTATCCTCTTTGAGCTGGCCGGGAAGGTAAAAGGAACGTaGGGTCTGAGAGTTTATCCAGGCCGGAGTCCATCCTTTCTACTT +
Preference number: 5 (lower is better)
Translates to: DHGILFELAGKVKGT*GLRVYPGRSPSFLL
Trigger: AAGTAGAAAGGATGGACTCCGGCCTGGATAAACTCTCAGACCCCACGTTCCTTTTACCTTCCCGGCCAGCTCAAAGAGGATACCATGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp TTTTGTTATGGTCAGCTGATACATTCTCAGCCACCGAGCTTCAGGCTTCCCTTTGTCCCCAGTGTACACTaGCCTGCCTGGCAGAGCAGT +
Preference number: 5 (lower is better)
Translates to: FCYGQLIHSQPPSFRLPFVPSVH*PAWQSS
Trigger: ACTGCTCTGCCAGGCAGGCAAGTGTACACTGGGGAC...AAAGGGAAGCCTGAAGCTCGGTGGCTGAGAATGTATCAGCTGACCATAACAAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS TCA 90 bp GAGTATTCTCCTTCCAGCGGGATAGACGCTGCTTCTTGGCAGACTTaGACCTGCAGCCTCTCTCATAGCTCCAATCTGACACTTTCAGCT +
Preference number: 5 (lower is better)
Translates to: EYSPSSGIDAASWQT*TCSLSHSSNLTLSA
Trigger: AGCTGAAAGTGTCAGATTGGAGCTATGAGAGAGGCTGCAGGTTCAAGTCTGCCAAGAAGCAGCGTCTATCCCGCTGGAAGGAGAATACTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 90 bp CTCCAGAACATCTGGGTGCACTGGACTAGGGCTAGAAAAAGATGCTaGGGCCACAGGTTTCCGTTTCCTCTTAATGTCACGTGGACATGG +
Preference number: 5 (lower is better)
Translates to: LQNIWVHWTRARKRC*GHRFPFPLNVTWTW
Trigger: CCATGTCCACGTGACATTAAGAGGAAACGGAAACCTGTGGCCTCAGCATCTTTTTCTAGCCCTAGTCCAGTGCACCCAGATGTTCTGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS CCA 90 bp TTCTGCTCTTCGGCTTCGCACTCCATCCTTTCTTTCCTTCCTGGTTaGCTTAGGAAAGTCCGATTCTCTGCTGATTCACACAGCCCATGG +
Preference number: 5 (lower is better)
Translates to: FCSSASHSILSFLPG*LRKVRFSADSHSPW
Trigger: CCATGGGCTGTGTGAATCAGCAGAGAATCGGACTTTCCTAAGCCAACCAGGAAGGAAAGAAAGGATGGAGTGCGAAGCCGAAGAGCAGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 90 bp CAGTGCAGTGATCAGGAGCCCACTTGGGCAGAAGGTTATGGACAGTaGATCCGGGGACACATTCTCCTTCATAAAACCAATCACTCTGCT +
Preference number: 5 (lower is better)
Translates to: QCSDQEPTWAEGYGQ*IRGHILLHKTNHSA
Trigger: AGCAGAGTGATTGGTTTTATGAAGGAGAATGTGTCCCCGGATTCACTGTCCATAACCTTCTGCCCAAGTGGGCTCCTGATCACTGCACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp CACAGTCAACACACTCAGCTGATACAAAAAGAGAGAGCTGTGTCAAGCACAGCCTGTCGTCCTTCATCATaGGTGAAGAGCCCCGTGTCA +
Preference number: 5 (lower is better)
Translates to: HSQHTQLIQKERAVSSTACRPSS*VKSPVS
Trigger: TGACACGGGGCTCTTCACCAATGATGAAGGACGACA...GGCTGTGCTTGACACAGCTCTCTCTTTTTGTATCAGCTGAGTGTGTTGACTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp TTTTGTTATGGTCAGCTGATACATTCTCAGCCACCGAGCTTCAGGCTTCCCTTTACTTCTCGGCAGTCCTaGGTGGCTTCATCCAGACTT +
Preference number: 5 (lower is better)
Translates to: FCYGQLIHSQPPSFRLPFTSRQS*VASSRL
Trigger: AAGTCTGGATGAAGCCACCAAGGACTGCCGAGAAGT...AAAGGGAAGCCTGAAGCTCGGTGGCTGAGAATGTATCAGCTGACCATAACAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp TTTTGTTATGGTCAGCTGATACATTCTCAGCCACCGAGCTTCAGGCTTCCCTTTTGTCGTCCTTCATCATaGGTGAAGAGCCCCGTGTCA +
Preference number: 5 (lower is better)
Translates to: FCYGQLIHSQPPSFRLPFCRPSS*VKSPVS
Trigger: TGACACGGGGCTCTTCACCAATGATGAAGGACGACA...AAAGGGAAGCCTGAAGCTCGGTGGCTGAGAATGTATCAGCTGACCATAACAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp TCTCAACAAGCCGTCATCAAGACCAGTGAACCAGTTTGGAAATATTTAAAAAGCAGAGCTGGGTGCCGTTaGGCCACCACCGTGTCATCA +
Preference number: 5 (lower is better)
Translates to: SQQAVIKTSEPVWKYLKSRAGCR*ATTVSS
Trigger: TGATGACACGGTGGTGGCCAAACGGCACCCAGCTCT...GCTTTTTAAATATTTCCAAACTGGTTCACTGGTCTTGATGACGGCTTGTTGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp CATGTCAAAAAGACATCGTTTCTTCCTAAACCATGGCCCCAACTAACCATTACATCAGAGTCACTGAAGTaGGTGAGCGGAGCCACTTCT +
Preference number: 5 (lower is better)
Translates to: HVKKTSFLPKPWPQLTITSESLK*VSGATS
Trigger: AGAAGTGGCTCCGCTCACCAACTTCAGTGACTCTGA...TGTAATGGTTAGTTGGGGCCATGGTTTAGGAAGAAACGATGTCTTTTTGACATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp ACACACCACATAGAAAGGCATGTCAAAAAGACATCGTTTCTTCCTAAACCATGGTGCTTCTTGGCAGACTaGAACCTGCAGCCTCTCTCA +
Preference number: 5 (lower is better)
Translates to: THHIERHVKKTSFLPKPWCFLAD*NLQPLS
Trigger: TGAGAGAGGCTGCAGGTTCAAGTCTGCCAAGAAGCA...CCATGGTTTAGGAAGAAACGATGTCTTTTTGACATGCCTTTCTATGTGGTGTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS-3UTR CAA 90 bp GGATTTCATCAGCGACATGAAAAGCTCTACACAGAAGGTACGCAAAAGCTGTTGTTTTCCTGTGGCATTTaGAAAAACGTGGCTGGAGGA +
Preference number: 5 (lower is better)
Translates to: GFHQRHEKLYTEGTQKLLFSCGI*KNVAGG
Trigger: TCCTCCAGCCACGTTTTTCAAAATGCCACAGGAAAA...CAACAGCTTTTGCGTACCTTCTGTGTAGAGCTTTTCATGTCGCTGATGAAATCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS GCA 72 bp CGCTTCCGTCCTCGGCGTTTGCGAAGCTGCCGCCTCTaGTGTCTGGGGCTCAGGGCCATCTCCTCCCACAGC +
Preference number: 6 (lower is better)
Translates to: RFRPRRLRSCRL*CLGLRAISSHS
Trigger: GCTGTGGGAGGAGATGGCCCTGAGCCCCAGACAGCAGAGGCGGCAGCTTCGCAAACGCCGAGGACGGAAGCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp TCAGACCGGCGCTTCCGTCCTCGGCGTTTGCGAAGCTaGCGCCTCTGCTGTCTGGGGCTCAGGGCCATCTCC +
Preference number: 6 (lower is better)
Translates to: SDRRFRPRRLRS*RLCCLGLRAIS
Trigger: GGAGATGGCCCTGAGCCCCAGACAGCAGAGGCGGCAGCTTCGCAAACGCCGAGGACGGAAGCGCCGGTCTGA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp TGGTATGGCCGATCCTCTCCGTCCCCAGGCTGCTCATaGTCGCCTCCTTCCCAGGCAGCCTTCTCCGCCCCT +
Preference number: 6 (lower is better)
Translates to: WYGRSSPSPGCS*SPPSQAAFSAP
Trigger: AGGGGCGGAGAAGGCTGCCTGGGAAGGAGGCGAGCATGAGCAGCCTGGGGACGGAGAGGATCGGCCATACCA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 72 bp GTCCTCGGCGTTTGCGAAGCTGCCGCCTCTGCTGTCTaGGGCTCAGGGCCATCTCCTCCCACAGCTCACCAA +
Preference number: 6 (lower is better)
Translates to: VLGVCEAAASAV*GSGPSPPTAHQ
Trigger: TTGGTGAGCTGTGGGAGGAGATGGCCCTGAGCCCCAGACAGCAGAGGCGGCAGCTTCGCAAACGCCGAGGAC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 72 bp GAGGTCCCGTCCAACCACTCGGAGTCAGGAGGCTTCTaGGCTGGGATGGCCGGCTCCAGAACATCTGGGTGC +
Preference number: 6 (lower is better)
Translates to: EVPSNHSESGGF*AGMAGSRTSGC
Trigger: GCACCCAGATGTTCTGGAGCCGGCCATCCCAGCTCAGAAGCCTCCTGACTCCGAGTGGTTGGACGGGACCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS CAA 90 bp TGCTGTCTGGGGCTCAGGGCCATCTCCTCCCACAGCTCACCAAGCTaGCTCTGCTCCGATGTCTGCTCCAAGGCTGAGGCCAGGTCATGC +
Preference number: 6 (lower is better)
Translates to: CCLGLRAISSHSSPS*LCSDVCSKAEARSC
Trigger: GCATGACCTGGCCTCAGCCTTGGAGCAGACATCGGAGCAGAGCAAGCTTGGTGAGCTGTGGGAGGAGATGGCCCTGAGCCCCAGACAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 72 bp TCGCCTCCTTCCCAGGCAGCCTTCTCCGCCCCTTCCTaGGGCAACGAGCTGCAGCTCCTGGCAACCTATTCA +
Preference number: 6 (lower is better)
Translates to: SPPSQAAFSAPS*GNELQLLATYS
Trigger: TGAATAGGTTGCCAGGAGCTGCAGCTCGTTGCCTCAGGAAGGGGCGGAGAAGGCTGCCTGGGAAGGAGGCGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 72 bp AGGCTTCTGAGCTGGGATGGCCGGCTCCAGAACATCTaGGTGCACTGGCAGAGCAGTGTGCAGGTGAGCACC +
Preference number: 6 (lower is better)
Translates to: RLLSWDGRLQNI*VHWQSSVQVST
Trigger: GGTGCTCACCTGCACACTGCTCTGCCAGTGCACCCAGATGTTCTGGAGCCGGCCATCCCAGCTCAGAAGCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
CDS GCA 72 bp AGGGCCATCTCCTCCCACAGCTCACCAAGCTTGCTCTaGTCCGATGTCTGCTCCAAGGCTGAGGCCAGGTCA +
Preference number: 6 (lower is better)
Translates to: RAISSHSSPSLL*SDVCSKAEARS
Trigger: TGACCTGGCCTCAGCCTTGGAGCAGACATCGGAGCAGAGCAAGCTTGGTGAGCTGTGGGAGGAGATGGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp CTTCACCTTCCGCCGGCGCCTGAGGGGTCGACAAGGTaGGTTTTCCGTAAAGGAGTCAGACTCGGGCCAAGA +
Preference number: 6 (lower is better)
Translates to: LHLPPAPEGSTR*VFRKGVRLGPR
Trigger: TCTTGGCCCGAGTCTGACTCCTTTACGGAAAACGCACCTTGTCGACCCCTCAGGCGCCGGCGGAAGGTGAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 72 bp AGCTGGGATGGCCGGCTCCAGAACATCTGGGTGCACTaGCAGAGCAGTGTGCAGGTGAGCACCTTCGATGAG +
Preference number: 6 (lower is better)
Translates to: SWDGRLQNIWVH*QSSVQVSTFDE
Trigger: CTCATCGAAGGTGCTCACCTGCACACTGCTCTGCCAGTGCACCCAGATGTTCTGGAGCCGGCCATCCCAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000071106.6
CDS CAA 90 bp GCTGGGTGCCGTTTGGCCACCACCGTGTCATCAGAGTCACTGAAGTaGGTGAGCGGAGCCACTTCTCGGCAGTCCTTGGTGGCTTCATCC +
Preference number: 6 (lower is better)
Translates to: AGCRLATTVSSESLK*VSGATSRQSLVASS
Trigger: GGATGAAGCCACCAAGGACTGCCGAGAAGTGGCTCCGCTCACCAACTTCAGTGACTCTGATGACACGGTGGTGGCCAAACGGCACCCAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 72 bp CACTTCTCGGCAGTCCTTGGTGGCTTCATCCAGACTTaGCTCAGAGGCCTCGCTGAAGCAGCAGGCGTGCTC +
Preference number: 6 (lower is better)
Translates to: HFSAVLGGFIQT*LRGLAEAAGVL
Trigger: GAGCACGCCTGCTGCTTCAGCGAGGCCTCTGAGTCAAGTCTGGATGAAGCCACCAAGGACTGCCGAGAAGTG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 72 bp CTGATGGTAACCAGAAATCTGTCTGCCGGGGGTCACTaGTGGTATGGCCGATCCTCTCCGTCCCCAGGCTGC +
Preference number: 6 (lower is better)
Translates to: LMVTRNLSAGGH*WYGRSSPSPGC
Trigger: GCAGCCTGGGGACGGAGAGGATCGGCCATACCATCAGTGACCCCCGGCAGACAGATTTCTGGTTACCATCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp AGGCAGCCTTCTCCGCCCCTTCCTGAGGCAACGAGCTaGAGCTCCTGGCAACCTATTCAGACGACCATGGTA +
Preference number: 6 (lower is better)
Translates to: RQPSPPLPEATS*SSWQPIQTTMV
Trigger: TACCATGGTCGTCTGAATAGGTTGCCAGGAGCTGCAGCTCGTTGCCTCAGGAAGGGGCGGAGAAGGCTGCCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp TCCCACAGCTCACCAAGCTTGCTCTGCTCCGATGTCTaGTCCAAGGCTGAGGCCAGGTCATGCACTAGCTCA +
Preference number: 6 (lower is better)
Translates to: SHSSPSLLCSDV*SKAEARSCTSS
Trigger: TGAGCTAGTGCATGACCTGGCCTCAGCCTTGGAGCAGACATCGGAGCAGAGCAAGCTTGGTGAGCTGTGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp GAAAAACGTGGCTGGAGGAAAGGCAGTGGCTTTCTCTaGTGCAGAGGTCCCGTCCAACCACTCGGAGTCAGG +
Preference number: 6 (lower is better)
Translates to: EKRGWRKGSGFL*CRGPVQPLGVR
Trigger: CCTGACTCCGAGTGGTTGGACGGGACCTCTGCAGCAGAGAAAGCCACTGCCTTTCCTCCAGCCACGTTTTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS CAA 72 bp CTGAAGTTGGTGAGCGGAGCCACTTCTCGGCAGTCCTaGGTGGCTTCATCCAGACTTGACTCAGAGGCCTCG +
Preference number: 6 (lower is better)
Translates to: LKLVSGATSRQS*VASSRLDSEAS
Trigger: CGAGGCCTCTGAGTCAAGTCTGGATGAAGCCACCAAGGACTGCCGAGAAGTGGCTCCGCTCACCAACTTCAG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CAA 72 bp CGTTTGGCCACCACCGTGTCATCAGAGTCACTGAAGTaGGTGAGCGGAGCCACTTCTCGGCAGTCCTTGGTG +
Preference number: 6 (lower is better)
Translates to: RLATTVSSESLK*VSGATSRQSLV
Trigger: CACCAAGGACTGCCGAGAAGTGGCTCCGCTCACCAACTTCAGTGACTCTGATGACACGGTGGTGGCCAAACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CAA 90 bp TCAGAGTCACTGAAGTTGGTGAGCGGAGCCACTTCTCGGCAGTCCTaGGTGGCTTCATCCAGACTTGACTCAGAGGCCTCGCTGAAGCAG +
Preference number: 6 (lower is better)
Translates to: SESLKLVSGATSRQS*VASSRLDSEASLKQ
Trigger: CTGCTTCAGCGAGGCCTCTGAGTCAAGTCTGGATGAAGCCACCAAGGACTGCCGAGAAGTGGCTCCGCTCACCAACTTCAGTGACTCTGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 72 bp AGCTCCAATCTGACACTTTCAGCTTCTGCTGAAGGCTaGCAGCCACCTCGGACGTCACTCGCTTCACCTTCC +
Preference number: 6 (lower is better)
Translates to: SSNLTLSASAEG*QPPRTSLASPS
Trigger: GGAAGGTGAAGCGAGTGACGTCCGAGGTGGCTGCCAGCCTTCAGCAGAAGCTGAAAGTGTCAGATTGGAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp TGTTGCTTACCCCTAATGATGGCACTGAGAGCTGGGTaGCGTTTGGCCACCACCGTGTCATCAGAGTCACTG +
Preference number: 6 (lower is better)
Translates to: CCLPLMMALRAG*RLATTVSSESL
Trigger: CAGTGACTCTGATGACACGGTGGTGGCCAAACGGCACCCAGCTCTCAGTGCCATCATTAGGGGTAAGCAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp GTCCAGGGAGTATTCTCCTTCCAGCGGGATAGACGCTaGTTCTTGGCAGACTTGAACCTGCAGCCTCTCTCA +
Preference number: 6 (lower is better)
Translates to: VQGVFSFQRDRR*FLADLNLQPLS
Trigger: TGAGAGAGGCTGCAGGTTCAAGTCTGCCAAGAAGCAGCGTCTATCCCGCTGGAAGGAGAATACTCCCTGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 72 bp ATCCTCTTTGAGCTGGCCGGGAAGGTAAAAGGAACGTaGGGTCTGAGAGTTTATCCAGGCCGGAGTCCATCC +
Preference number: 6 (lower is better)
Translates to: ILFELAGKVKGT*GLRVYPGRSPS
Trigger: GGATGGACTCCGGCCTGGATAAACTCTCAGACCCCACGTTCCTTTTACCTTCCCGGCCAGCTCAAAGAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CAA 90 bp GAATGTTGCTTACCCCTAATGATGGCACTGAGAGCTGGGTGCCGTTaGGCCACCACCGTGTCATCAGAGTCACTGAAGTTGGTGAGCGGA +
Preference number: 6 (lower is better)
Translates to: ECCLPLMMALRAGCR*ATTVSSESLKLVSG
Trigger: TCCGCTCACCAACTTCAGTGACTCTGATGACACGGTGGTGGCCAAACGGCACCCAGCTCTCAGTGCCATCATTAGGGGTAAGCAACATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 72 bp CCTTCCAGCGGGATAGACGCTGCTTCTTGGCAGACTTaGACCTGCAGCCTCTCTCATAGCTCCAATCTGACA +
Preference number: 6 (lower is better)
Translates to: PSSGIDAASWQT*TCSLSHSSNLT
Trigger: TGTCAGATTGGAGCTATGAGAGAGGCTGCAGGTTCAAGTCTGCCAAGAAGCAGCGTCTATCCCGCTGGAAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 72 bp TCCAGGCCGGAGTCCATCCTTTCTACTTCAGTGCAGTaGTCAGGAGCCCACTTGGGCAGAAGGTTATGGACA +
Preference number: 6 (lower is better)
Translates to: SRPESILSTSVQ*SGAHLGRRLWT
Trigger: TGTCCATAACCTTCTGCCCAAGTGGGCTCCTGATCACTGCACTGAAGTAGAAAGGATGGACTCCGGCCTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 72 bp CCTGGCAACCTATTCAGACGACCATGGTATCCTCTTTaGGCTGGCCGGGAAGGTAAAAGGAACGTGGGGTCT +
Preference number: 6 (lower is better)
Translates to: PGNLFRRPWYPL*AGREGKRNVGS
Trigger: AGACCCCACGTTCCTTTTACCTTCCCGGCCAGCTCAAAGAGGATACCATGGTCGTCTGAATAGGTTGCCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp CTAGTGTCACACTCGGACATGTTCTCGTCAGAGCCGTaGTTCTGCTCTTCGGCTTCGCACTCCATCCTTTCT +
Preference number: 6 (lower is better)
Translates to: LVSHSDMFSSEP*FCSSASHSILS
Trigger: AGAAAGGATGGAGTGCGAAGCCGAAGAGCAGAAGCACGGCTCTGACGAGAACATGTCCGAGTGTGACACTAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp TCTCTTTTCCCAGCTGATGGTAACCAGAAATCTGTCTaGCGGGGGTCACTGATGGTATGGCCGATCCTCTCC +
Preference number: 6 (lower is better)
Translates to: SLFPADGNQKSV*RGSLMVWPILS
Trigger: GGAGAGGATCGGCCATACCATCAGTGACCCCCGGCAGACAGATTTCTGGTTACCATCAGCTGGGAAAAGAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 72 bp AGAATGTTGCTTACCCCTAATGATGGCACTGAGAGCTaGGTGCCGTTTGGCCACCACCGTGTCATCAGAGTC +
Preference number: 6 (lower is better)
Translates to: RMLLTPNDGTES*VPFGHHRVIRV
Trigger: GACTCTGATGACACGGTGGTGGCCAAACGGCACCCAGCTCTCAGTGCCATCATTAGGGGTAAGCAACATTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 72 bp AGGTTTCCGTTTCCTCTTAATGTCACGTGGACATGGTaGTCCCCAGTGTACACTTGCCTGCCTGGCAGAGCA +
Preference number: 6 (lower is better)
Translates to: RFPFPLNVTWTW*SPVYTCLPGRA
Trigger: TGCTCTGCCAGGCAGGCAAGTGTACACTGGGGACCACCATGTCCACGTGACATTAAGAGGAAACGGAAACCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2
CDS CAA 72 bp TTACCCCTAATGATGGCACTGAGAGCTGGGTGCCGTTaGGCCACCACCGTGTCATCAGAGTCACTGAAGTTG +
Preference number: 6 (lower is better)
Translates to: LPLMMALRAGCR*ATTVSSESLKL
Trigger: CAACTTCAGTGACTCTGATGACACGGTGGTGGCCAAACGGCACCCAGCTCTCAGTGCCATCATTAGGGGTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CAA 72 bp TCACTCTGCTCATCATCCCCTTGTCGTCCTTCATCATaGGTGAAGAGCCCCGTGTCACTGCTGCTGCACACA +
Preference number: 6 (lower is better)
Translates to: SLCSSSPCRPSS*VKSPVSLLLHT
Trigger: TGTGTGCAGCAGCAGTGACACGGGGCTCTTCACCAATGATGAAGGACGACAAGGGGATGATGAGCAGAGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CAA 90 bp ACAAGGTGCGTTTTCCGTAAAGGAGTCAGACTCGGGCCAAGAATGTaGCTTACCCCTAATGATGGCACTGAGAGCTGGGTGCCGTTTGGC +
Preference number: 6 (lower is better)
Translates to: TRCVFRKGVRLGPRM*LTPNDGTESWVPFG
Trigger: GCCAAACGGCACCCAGCTCTCAGTGCCATCATTAGGGGTAAGCAACATTCTTGGCCCGAGTCTGACTCCTTTACGGAAAACGCACCTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 72 bp AGACTTGAACCTGCAGCCTCTCTCATAGCTCCAATCTaGCACTTTCAGCTTCTGCTGAAGGCTGGCAGCCAC +
Preference number: 6 (lower is better)
Translates to: RLEPAASLIAPI*HFQLLLKAGSH
Trigger: GTGGCTGCCAGCCTTCAGCAGAAGCTGAAAGTGTCAGATTGGAGCTATGAGAGAGGCTGCAGGTTCAAGTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp TCACACTCGGACATGTTCTCGTCAGAGCCGTGCTTCTaGTCTTCGGCTTCGCACTCCATCCTTTCTTTCCTT +
Preference number: 6 (lower is better)
Translates to: SHSDMFSSEPCF*SSASHSILSFL
Trigger: AAGGAAAGAAAGGATGGAGTGCGAAGCCGAAGAGCAGAAGCACGGCTCTGACGAGAACATGTCCGAGTGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CCA 72 bp AGGAAAGTCCGATTCTCTGCTGATTCACACAGCCCATaGCCAGATGAGGTCCAGGGAGTATTCTCCTTCCAG +
Preference number: 6 (lower is better)
Translates to: RKVRFSADSHSP*PDEVQGVFSFQ
Trigger: CTGGAAGGAGAATACTCCCTGGACCTCATCTGGCCATGGGCTGTGTGAATCAGCAGAGAATCGGACTTTCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp TTTTCCGTAAAGGAGTCAGACTCGGGCCAAGAATGTTaGTTACCCCTAATGATGGCACTGAGAGCTGGGTGC +
Preference number: 6 (lower is better)
Translates to: FSVKESDSGQEC*LPLMMALRAGC
Trigger: GCACCCAGCTCTCAGTGCCATCATTAGGGGTAAGCAACATTCTTGGCCCGAGTCTGACTCCTTTACGGAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS GCA 72 bp GTTTATCCAGGCCGGAGTCCATCCTTTCTACTTCAGTaGAGTGATCAGGAGCCCACTTGGGCAGAAGGTTAT +
Preference number: 6 (lower is better)
Translates to: VYPGRSPSFLLQ*SDQEPTWAEGY
Trigger: ATAACCTTCTGCCCAAGTGGGCTCCTGATCACTGCACTGAAGTAGAAAGGATGGACTCCGGCCTGGATAAAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS CAA 72 bp GTTTTCCGTAAAGGAGTCAGACTCGGGCCAAGAATGTaGCTTACCCCTAATGATGGCACTGAGAGCTGGGTG +
Preference number: 6 (lower is better)
Translates to: VFRKGVRLGPRM*LTPNDGTESWV
Trigger: CACCCAGCTCTCAGTGCCATCATTAGGGGTAAGCAACATTCTTGGCCCGAGTCTGACTCCTTTACGGAAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000071106.6
ENSMUST00000221368.2
CDS TCA 72 bp ATCTGGGTGCACTGGACTAGGGCTAGAAAAAGATGCTaGGGCCACAGGTTTCCGTTTCCTCTTAATGTCACG +
Preference number: 6 (lower is better)
Translates to: IWVHWTRARKRC*GHRFPFPLNVT
Trigger: CGTGACATTAAGAGGAAACGGAAACCTGTGGCCTCAGCATCTTTTTCTAGCCCTAGTCCAGTGCACCCAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000221368.2