RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GPATCH2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039210

Ensembl transcript IDs: ENSMUST00000044812.12, ENSMUST00000065573.14, ENSMUST00000110943.9, ENSMUST00000159748.8, ENSMUST00000160471.8, ENSMUST00000160481.8, ENSMUST00000160570.2

Found 382 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGCCATCTCGCCCGAGGCCTGACCCGGGTGTCCATCCCATACTCTaGAGCATGCGGTTCCCGATGTTGCTCTCTAGGATCGGCTGGGCG +
Preference number: 1 (lower is better)
Translates to: LPSRPRPDPGVHPIL*SMRFPMLLSRIGWA
Trigger: CGCCCAGCCGATCCTAGAGAGCAACATCGGGAACCGCATGCTTCAGAGTATGGGATGGACACCCGGGTCAGGCCTCGGGCGAGATGGCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR GCA 90 bp ACCCTTTCGGCCTCTGAACGGCTTGAACTGGCTCCGCGATCCCTCTaGCATCTCGCCCGAGGCCTGACCCGGGTGTCCATCCCATACTCT +
Preference number: 1 (lower is better)
Translates to: TLSASERLELAPRSL*HLARGLTRVSIPYS
Trigger: AGAGTATGGGATGGACACCCGGGTCAGGCCTCGGGCGAGATGGCAGAGGGATCGCGGAGCCAGTTCAAGCCGTTCAGAGGCCGAAAGGGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR GCA 90 bp CTCGCCCGAGGCCTGACCCGGGTGTCCATCCCATACTCTGAAGCATaGGGTTCCCGATGTTGCTCTCTAGGATCGGCTGGGCGTTCTCAC +
Preference number: 1 (lower is better)
Translates to: LARGLTRVSIPYSEA*GSRCCSLGSAGRSH
Trigger: GTGAGAACGCCCAGCCGATCCTAGAGAGCAACATCGGGAACCGCATGCTTCAGAGTATGGGATGGACACCCGGGTCAGGCCTCGGGCGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR CCA 90 bp CTCACTAAGCAAGCCTTCCCGGACATGCTTAGGACTCCCTGCATGTaGGAGAGGGAGCACGTGGGAGAGAGGAGGACCACACTACTTAGT +
Preference number: 1 (lower is better)
Translates to: LTKQAFPDMLRTPCM*EREHVGERRTTLLS
Trigger: ACTAAGTAGTGTGGTCCTCCTCTCTCCCACGTGCTCCCTCTCCCACATGCAGGGAGTCCTAAGCATGTCCGGGAAGGCTTGCTTAGTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR CCA 90 bp TGTGATGGAATCCCATTTCTATCACTGGCGGGACGCTATGCAGCCTaGAAGCTAGCTGGAGGCAACGTCAGAGGTCGGCTTCAAACCAGT +
Preference number: 1 (lower is better)
Translates to: CDGIPFLSLAGRYAA*KLAGGNVRGRLQTS
Trigger: ACTGGTTTGAAGCCGACCTCTGACGTTGCCTCCAGCTAGCTTCCAGGCTGCATAGCGTCCCGCCAGTGATAGAAATGGGATTCCATCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR CCA 90 bp AGGCCACTCTTCTTCCTCTTGGAGCTGATCCTTAACCCCAGCCTTTaGGGAGAGGTAGACATATGGAGGGCAGGGTTTGCAGGTCAGTCA +
Preference number: 1 (lower is better)
Translates to: RPLFFLLELILNPSL*GEVDIWRAGFAGQS
Trigger: TGACTGACCTGCAAACCCTGCCCTCCATATGTCTACCTCTCCCCAAAGGCTGGGGTTAAGGATCAGCTCCAAGAGGAAGAAGAGTGGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR TCA 90 bp GAAACACGTGAAGGGTTGAGGTTCGTACTTGAGCACCGTGAGTTGTaGTGGAATCCCATTTCTATCACTGGCGGGACGCTATGCAGCCTG +
Preference number: 1 (lower is better)
Translates to: ETREGLRFVLEHREL*WNPISITGGTLCSL
Trigger: CAGGCTGCATAGCGTCCCGCCAGTGATAGAAATGGGATTCCATCACAACTCACGGTGCTCAAGTACGAACCTCAACCCTTCACGTGTTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR TCA 90 bp GAGCTTTCTTGTGTGAAAGTAGAACTGTGGTGTCCCAGCAGCTCGTaGGGACCTTGCTGCAGAAGCTGCAGCAGAGGGTTCACATTGTCT +
Preference number: 1 (lower is better)
Translates to: ELSCVKVELWCPSSS*GPCCRSCSRGFTLS
Trigger: AGACAATGTGAACCCTCTGCTGCAGCTTCTGCAGCAAGGTCCTCACGAGCTGCTGGGACACCACAGTTCTACTTTCACACAAGAAAGCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR GCA 90 bp GCAGTGCACCCGCGTGCACACATACTCAAGCACGCATGTTTAACCTaGTGTCTCAACTCTGTCTGCATAATCATTGCAGCCAGTCCCAAA +
Preference number: 1 (lower is better)
Translates to: AVHPRAHILKHACLT*CLNSVCIIIAASPK
Trigger: TTTGGGACTGGCTGCAATGATTATGCAGACAGAGTTGAGACAGCAGGTTAAACATGCGTGCTTGAGTATGTGTGCACGCGGGTGCACTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR TCA 90 bp GGTGGAGCCCCTGAAGACTTTTTAATATTCTTTGAAGGCGTTCCATaGAGGCGACTGAGTCTAGCTTGGAAACCTCCTCTGCCAGGATGG +
Preference number: 1 (lower is better)
Translates to: GGAPEDFLIFFEGVP*RRLSLAWKPPLPGW
Trigger: CCATCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCGCCTTCATGGAACGCCTTCAAAGAATATTAAAAAGTCTTCAGGGGCTCCACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
3UTR TCA 90 bp AGAAATGAAACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTaGGTCCAGTACACGGTTAGTCTCTTCGATCTTCCCTCCTACGTG +
Preference number: 1 (lower is better)
Translates to: RNETQRRANKFGKDP*VQYTVSLFDLPSYV
Trigger: CACGTAGGAGGGAAGATCGAAGAGACTAACCGTGTACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGTTTCATTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR CCA 90 bp AGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTaGGTTAGGCCAGTTAGCTCAGTTTTGGGAAAAGCTATTTATATC +
Preference number: 1 (lower is better)
Translates to: SIRMPGPSVPSVLGK*VRPVSSVLGKAIYI
Trigger: GATATAAATAGCTTTTCCCAAAACTGAGCTAACTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR TCA 90 bp ATATCTTCAAACAAACTGACTCAGGAGTTTACTAATTTACTTCAGTaGCTAAACCCTGAGCAGGCCACTCTTCTTCCTCTTGGAGCTGAT +
Preference number: 1 (lower is better)
Translates to: ISSNKLTQEFTNLLQ*LNPEQATLLPLGAD
Trigger: ATCAGCTCCAAGAGGAAGAAGAGTGGCCTGCTCAGGGTTTAGTCACTGAAGTAAATTAGTAAACTCCTGAGTCAGTTTGTTTGAAGATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp GAACTGGCTCCGCGATCCCTCTGCCATCTCGCCCGAGGCCTGACCCGGGTGTCCCGCAGCAGTCCTTTGTaGCATCTCTACCAGCCCCAA +
Preference number: 2 (lower is better)
Translates to: ELAPRSLCHLARGLTRVSRSSPL*HLYQPQ
Trigger: TTGGGGCTGGTAGAGATGGCACAAAGGACTGCTGCG...GGACACCCGGGTCAGGCCTCGGGCGAGATGGCAGAGGGATCGCGGAGCCAGTTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR-3UTR CCA 90 bp CGGGGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGGGGAGAGGGAGCACGTaGGAGAGAGGAGGACCACAC +
Preference number: 2 (lower is better)
Translates to: RGPLVSWPAHFLPRPLLRGRGST*ERGGPH
Trigger: GTGTGGTCCTCCTCTCTCCCACGTGCTCCCTCTCCC...CCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACCCCG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp GAACTGGCTCCGCGATCCCTCTGCCATCTCGCCCGAGGCCTGACCCGGGTGTCCGAGCACCGTGAGTTGTaGTGGAATCCCATTTCTATC +
Preference number: 2 (lower is better)
Translates to: ELAPRSLCHLARGLTRVSEHREL*WNPISI
Trigger: GATAGAAATGGGATTCCATCACAACTCACGGTGCTC...GGACACCCGGGTCAGGCCTCGGGCGAGATGGCAGAGGGATCGCGGAGCCAGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR-3UTR GCA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCACTGGCGGGACGCTATaGAGCCTGGAAGCTAGCTGG +
Preference number: 2 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSTGGTL*SLEASW
Trigger: CCAGCTAGCTTCCAGGCTGCATAGCGTCCCGCCAGT...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp GGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGGGAGAGGGAGCACGTaGGAGAGAGGAGGACCACAC +
Preference number: 2 (lower is better)
Translates to: GPLVSWPAHFLPRPLLRKGRGST*ERGGPH
Trigger: GTGTGGTCCTCCTCTCTCCCACGTGCTCCCTCTCCC...TTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp GGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAACTGGCGGGACGCTATaGAGCCTGGAAGCTAGCTGG +
Preference number: 2 (lower is better)
Translates to: GPLVSWPAHFLPRPLLRKTGGTL*SLEASW
Trigger: CCAGCTAGCTTCCAGGCTGCATAGCGTCCCGCCAGT...TTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCGATCCTCAGACCCACTaGGTGTGCTCCACTGTGTCT +
Preference number: 2 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSDPQTH*VCSTVS
Trigger: AGACACAGTGGAGCACACCCAGTGGGTCTGAGGATC...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR CAA 90 bp CATTGTCTGGAGGGCAGTGATGGGAAGTGCCCAGAGAGAGCAGTTTaGGAGGCCCAGTGCTCAGCACATGGCCGTTCCTGTGCATCCTCT +
Preference number: 2 (lower is better)
Translates to: HCLEGSDGKCPERAV*EAQCSAHGRSCASS
Trigger: AGAGGATGCACAGGAACGGCCATGTGCTGAGCACTGGGCCTCCAAAACTGCTCTCTCTGGGCACTTCCCATCACTGCCCTCCAGACAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp GGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGATCCTCAGACCCACTaGGTGTGCTCCACTGTGTCT +
Preference number: 2 (lower is better)
Translates to: GPLVSWPAHFLPRPLLRKDPQTH*VCSTVS
Trigger: AGACACAGTGGAGCACACCCAGTGGGTCTGAGGATC...TTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp GCAGAACCTCTCAATCCTGTCTGTCCACCGCAAACTAACACGGCTGCAGTGCACGGCTACCGTAGGGAGTaGATGGGAAGGGAAGAGACC +
Preference number: 2 (lower is better)
Translates to: AEPLNPVCPPQTNTAAVHGYRRE*MGREET
Trigger: GGTCTCTTCCCTTCCCATCCACTCCCTACGGTAGCC...GTGCACTGCAGCCGTGTTAGTTTGCGGTGGACAGACAGGATTGAGAGGTTCTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp TTTGGCTACCGTAGGGAGTGGATGGGAAGGGAAGAGACCCTAACTGACTGGCTTTTGTCTGGAGGGCAGTaGTGGGAAGTGCCCAGAGAG +
Preference number: 2 (lower is better)
Translates to: FGYRREWMGREETLTDWLLSGGQ*WEVPRE
Trigger: CTCTCTGGGCACTTCCCATCACTGCCCTCCAGACAA...AAGCCAGTCAGTTAGGGTCTCTTCCCTTCCCATCCACTCCCTACGGTAGCCAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp GCAGAACCTCTCAATCCTGTCTGTCCACCGCAAACTAACACGGCTGCAGTGCACATGCTTAGGACTCCCTaGATGTGGGAGAGGGAGCAC +
Preference number: 2 (lower is better)
Translates to: AEPLNPVCPPQTNTAAVHMLRTP*MWEREH
Trigger: GTGCTCCCTCTCCCACATGCAGGGAGTCCTAAGCAT...GTGCACTGCAGCCGTGTTAGTTTGCGGTGGACAGACAGGATTGAGAGGTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCAAGGTGTGTAAGCTCTaGACTGGAGTGATGCTGACA +
Preference number: 2 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSKVCKL*TGVMLT
Trigger: TGTCAGCATCACTCCAGTGCAGAGCTTACACACCTT...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp GGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAATGGAGGGCAGGGTTTaGAGGTCAGTCAGGATGACT +
Preference number: 2 (lower is better)
Translates to: GPLVSWPAHFLPRPLLRKMEGRV*RSVRMT
Trigger: AGTCATCCTGACTGACCTGCAAACCCTGCCCTCCAT...TTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp GCAGAACCTCTCAATCCTGTCTGTCCACCGCAAACTAACACGGCTGCAGTGCACGATCCTCAGACCCACTaGGTGTGCTCCACTGTGTCT +
Preference number: 2 (lower is better)
Translates to: AEPLNPVCPPQTNTAAVHDPQTH*VCSTVS
Trigger: AGACACAGTGGAGCACACCCAGTGGGTCTGAGGATC...GTGCACTGCAGCCGTGTTAGTTTGCGGTGGACAGACAGGATTGAGAGGTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp GCAGAACCTCTCAATCCTGTCTGTCCACCGCAAACTAACACGGCTGCAGTGCACGGTCCACTTGTGTCCTaGCCAGCCCACTTCTTACCA +
Preference number: 2 (lower is better)
Translates to: AEPLNPVCPPQTNTAAVHGPLVS*PAHFLP
Trigger: TGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC...GTGCACTGCAGCCGTGTTAGTTTGCGGTGGACAGACAGGATTGAGAGGTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR CAA 90 bp CCTGCTGCAGTGGGTCCAGGCAACGGGGCAGCTTTCCTTCTCCTTTaGATGTCTCCTGTGCACAAGGATCCTAAATGCATGCTTGTCTGC +
Preference number: 2 (lower is better)
Translates to: PAAVGPGNGAAFLLL*MSPVHKDPKCMLVC
Trigger: GCAGACAAGCATGCATTTAGGATCCTTGTGCACAGGAGACATCAAAAGGAGAAGGAAAGCTGCCCCGTTGCCTGGACCCACTGCAGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR-3UTR CCA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCATGTCTAGAAACTGCTaGAAACCGAGGAAACACGTG +
Preference number: 2 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSMSRNC*KPRKHV
Trigger: CACGTGTTTCCTCGGTTTCCAGCAGTTTCTAGACAT...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGCAGACCCACTGGGTGTaGTCCACTGTGTCTGAGCAT +
Preference number: 2 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQQTHWV*STVSEH
Trigger: ATGCTCAGACACAGTGGAGCACACCCAGTGGGTCTG...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGATGCTTAGGACTCCCTaGATGTGGGAGAGGGAGCAC +
Preference number: 2 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQMLRTP*MWEREH
Trigger: GTGCTCCCTCTCCCACATGCAGGGAGTCCTAAGCAT...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGGATCCTCAGACCCACTaGGTGTGCTCCACTGTGTCT +
Preference number: 2 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQDPQTH*VCSTVS
Trigger: AGACACAGTGGAGCACACCCAGTGGGTCTGAGGATC...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR CAA 90 bp CCAGGGTCAACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTaGAGGCTAAAAGAGAGACCACCACCAATCCTGCAGCACAAACAG +
Preference number: 2 (lower is better)
Translates to: PGSTYIPGNPPSQFH*RLKERPPPILQHKQ
Trigger: CTGTTTGTGCTGCAGGATTGGTGGTGGTCTCTCTTTTAGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGTTGACCCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
3UTR-3UTR TCA 90 bp GGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAACTAATTTACTTCAGTaGCTAAACCCTGAGCAGGCC +
Preference number: 2 (lower is better)
Translates to: GPLVSWPAHFLPRPLLRKTNLLQ*LNPEQA
Trigger: GGCCTGCTCAGGGTTTAGTCACTGAAGTAAATTAGT...TTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp CATCCTCTAGGGCAGGGTAAGGACACAGCAGCTGATTTCTCTGGAGACTGGAGCAAGGTGTGTAAGCTCTaGACTGGAGTGATGCTGACA +
Preference number: 2 (lower is better)
Translates to: HPLGQGKDTAADFSGDWSKVCKL*TGVMLT
Trigger: TGTCAGCATCACTCCAGTGCAGAGCTTACACACCTT...GCTCCAGTCTCCAGAGAAATCAGCTGCTGTGTCCTTACCCTGCCCTAGAGGATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGATGGAGGGCAGGGTTTaGAGGTCAGTCAGGATGACT +
Preference number: 2 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQMEGRV*RSVRMT
Trigger: AGTCATCCTGACTGACCTGCAAACCCTGCCCTCCAT...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp GCAGAACCTCTCAATCCTGTCTGTCCACCGCAAACTAACACGGCTGCAGTGCACCACGCATGTTTAACCTaGTGTCTCAACTCTGTCTGC +
Preference number: 2 (lower is better)
Translates to: AEPLNPVCPPQTNTAAVHHACLT*CLNSVC
Trigger: GCAGACAGAGTTGAGACAGCAGGTTAAACATGCGTG...GTGCACTGCAGCCGTGTTAGTTTGCGGTGGACAGACAGGATTGAGAGGTTCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp GAGGGAAGGAGCCACTTAAGATACTCTCAAACACAGGGTCGGGCAGGTTGGTGTTGCTCATCATCACTGTaGCTAAGATCCCAAGGAGCC +
Preference number: 2 (lower is better)
Translates to: EGRSHLRYSQTQGRAGWCCSSSL*LRSQGA
Trigger: GGCTCCTTGGGATCTTAGGCACAGTGATGATGAGCA...ACACCAACCTGCCCGACCCTGTGTTTGAGAGTATCTTAAGTGGCTCCTTCCCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
3UTR-3UTR GCA 90 bp TGGAAACCTCCTCTGCCAGGATGGGACATGAGAGGGAAGGAGCCACTTAAGATAGTTGGTGTCCAGCTCTaGTGGCTCATCCTTTTCCCA +
Preference number: 2 (lower is better)
Translates to: WKPPLPGWDMRGKEPLKIVGVQL*WLILFP
Trigger: TGGGAAAAGGATGAGCCAGCAGAGCTGGACACCAAC...TATCTTAAGTGGCTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGGTTTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
3UTR-3UTR CCA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGACGTACACGCACGGATaGAGCAAGGCAGCAGAAAGA +
Preference number: 2 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQTYTHG*SKAAER
Trigger: TCTTTCTGCTGCCTTGCTCCATCCGTGCGTGTACGT...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp GAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTTAGATCCTCAGACCCACTaGGTGTGCTCCACTGTGTCT +
Preference number: 2 (lower is better)
Translates to: ECLVPLFLLYLVSGLGQLDPQTH*VCSTVS
Trigger: AGACACAGTGGAGCACACCCAGTGGGTCTGAGGATC...TAACTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGCAATTCCTGCTGCAGTaGGTCCAGGCAACGGGGCAG +
Preference number: 2 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKQFLLQ*VQATGQ
Trigger: CTGCCCCGTTGCCTGGACCCACTGCAGCAGGAATTG...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR-3UTR TCA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTCTTCCTCTTGGAGCTaGTCCTTAACCCCAGCCTTT +
Preference number: 2 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQSSSWS*SLTPAF
Trigger: AAAGGCTGGGGTTAAGGATCAGCTCCAAGAGGAAGA...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp ACGTCACATCTTGCTGCTCTTTATAAGGACTTGAATGCTGAAGGGTACCTGTGGTTGTCTGGAGGGCAGTaGTGGGAAGTGCCCAGAGAG +
Preference number: 2 (lower is better)
Translates to: TSHLAALYKDLNAEGYLWLSGGQ*WEVPRE
Trigger: CTCTCTGGGCACTTCCCATCACTGCCCTCCAGACAA...CCACAGGTACCCTTCAGCATTCAAGTCCTTATAAAGAGCAGCAAGATGTGACGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp CATCCTCTAGGGCAGGGTAAGGACACAGCAGCTGATTTCTCTGGAGACTGGAGCTTCATGTCTAGAAACTaGTGGAAACCGAGGAAACAC +
Preference number: 2 (lower is better)
Translates to: HPLGQGKDTAADFSGDWSFMSRN*WKPRKH
Trigger: GTGTTTCCTCGGTTTCCAGCAGTTTCTAGACATGAA...GCTCCAGTCTCCAGAGAAATCAGCTGCTGTGTCCTTACCCTGCCCTAGAGGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGCAGACCCACTGGGTGTaGTCCACTGTGTCTGAGCAT +
Preference number: 2 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKQTHWV*STVSEH
Trigger: ATGCTCAGACACAGTGGAGCACACCCAGTGGGTCTG...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp CATCCTCTAGGGCAGGGTAAGGACACAGCAGCTGATTTCTCTGGAGACTGGAGCAGAAATGCAGATGTTTaGCAGACTACAGAGTCTGCA +
Preference number: 2 (lower is better)
Translates to: HPLGQGKDTAADFSGDWSRNADV*QTTESA
Trigger: TGCAGACTCTGTAGTCTGGCAAACATCTGCATTTCT...GCTCCAGTCTCCAGAGAAATCAGCTGCTGTGTCCTTACCCTGCCCTAGAGGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp TTTGGCTACCGTAGGGAGTGGATGGGAAGGGAAGAGACCCTAACTGACTGGCTTATGTCTAGAAACTGCTaGAAACCGAGGAAACACGTG +
Preference number: 2 (lower is better)
Translates to: FGYRREWMGREETLTDWLMSRNC*KPRKHV
Trigger: CACGTGTTTCCTCGGTTTCCAGCAGTTTCTAGACAT...AAGCCAGTCAGTTAGGGTCTCTTCCCTTCCCATCCACTCCCTACGGTAGCCAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGGGGAGAGGGAGCACGTaGGAGAGAGGAGGACCACAC +
Preference number: 2 (lower is better)
Translates to: RISDLMERTTEWNGRNIVGRGST*ERGGPH
Trigger: GTGTGGTCCTCCTCTCTCCCACGTGCTCCCTCTCCC...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp GCAGAACCTCTCAATCCTGTCTGTCCACCGCAAACTAACACGGCTGCAGTGCACGAGAGAACGACAGAATaGAATGGAAGGAACATAGTG +
Preference number: 2 (lower is better)
Translates to: AEPLNPVCPPQTNTAAVHERTTE*NGRNIV
Trigger: CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTC...GTGCACTGCAGCCGTGTTAGTTTGCGGTGGACAGACAGGATTGAGAGGTTCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp CAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGACAGTTCCTAGAAGAAATGGCATCATAAGAATGTaGTCCTCAGACCCACTGGGT +
Preference number: 2 (lower is better)
Translates to: QPTSYHGHFSGKTVPRRNGIIRM*SSDPLG
Trigger: ACCCAGTGGGTCTGAGGATCACATTCTTATGATGCC...ATTTCTTCTAGGAACTGTCTTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp ATAAGAGACCAACTATTCTTCATGTCTAGAAACTGCTGGAAACCGAGGAAACACACTGGCGGGACGCTATaGAGCCTGGAAGCTAGCTGG +
Preference number: 2 (lower is better)
Translates to: IRDQLFFMSRNCWKPRKHTGGTL*SLEASW
Trigger: CCAGCTAGCTTCCAGGCTGCATAGCGTCCCGCCAGT...GTGTTTCCTCGGTTTCCAGCAGTTTCTAGACATGAAGAATAGTTGGTCTCTTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGGGGAGAGGGAGCACGTaGGAGAGAGGAGGACCACAC +
Preference number: 2 (lower is better)
Translates to: LNKEQLRISDLMERTTEWGRGST*ERGGPH
Trigger: GTGTGGTCCTCCTCTCTCCCACGTGCTCCCTCTCCC...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp TTTGGCTACCGTAGGGAGTGGATGGGAAGGGAAGAGACCCTAACTGACTGGCTTTTAAATGTAAACCAGTaGGATTCATGTCCCGAGCAG +
Preference number: 2 (lower is better)
Translates to: FGYRREWMGREETLTDWLLNVNQ*DSCPEQ
Trigger: CTGCTCGGGACATGAATCCCACTGGTTTACATTTAA...AAGCCAGTCAGTTAGGGTCTCTTCCCTTCCCATCCACTCCCTACGGTAGCCAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGTCTTCCTCTTGGAGCTaGTCCTTAACCCCAGCCTTT +
Preference number: 2 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKSSSWS*SLTPAF
Trigger: AAAGGCTGGGGTTAAGGATCAGCTCCAAGAGGAAGA...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp GAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTTAACTAATTTACTTCAGTaGCTAAACCCTGAGCAGGCC +
Preference number: 2 (lower is better)
Translates to: ECLVPLFLLYLVSGLGQLTNLLQ*LNPEQA
Trigger: GGCCTGCTCAGGGTTTAGTCACTGAAGTAAATTAGT...TAACTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp CAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGACAGTTCCTAGAAGAAATAAGGTGTGTAAGCTCTaGACTGGAGTGATGCTGACA +
Preference number: 2 (lower is better)
Translates to: QPTSYHGHFSGKTVPRRNKVCKL*TGVMLT
Trigger: TGTCAGCATCACTCCAGTGCAGAGCTTACACACCTT...ATTTCTTCTAGGAACTGTCTTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGAGGATCCTAAATGCATaGTTGTCTGCCTGCTGGCTG +
Preference number: 2 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKRILNA*LSACWL
Trigger: CAGCCAGCAGGCAGACAAGCATGCATTTAGGATCCT...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR-3UTR TCA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGGAGCACCGTGAGTTGTaGTGGAATCCCATTTCTATC +
Preference number: 2 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKEHREL*WNPISI
Trigger: GATAGAAATGGGATTCCATCACAACTCACGGTGCTC...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGCAGACCCACTGGGTGTaGTCCACTGTGTCTGAGCAT +
Preference number: 2 (lower is better)
Translates to: RISDLMERTTEWNGRNIVQTHWV*STVSEH
Trigger: ATGCTCAGACACAGTGGAGCACACCCAGTGGGTCTG...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGATGCTTAGGACTCCCTaGATGTGGGAGAGGGAGCAC +
Preference number: 2 (lower is better)
Translates to: RISDLMERTTEWNGRNIVMLRTP*MWEREH
Trigger: GTGCTCCCTCTCCCACATGCAGGGAGTCCTAAGCAT...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGAAGGTGTGTAAGCTCTaGACTGGAGTGATGCTGACA +
Preference number: 2 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKKVCKL*TGVMLT
Trigger: TGTCAGCATCACTCCAGTGCAGAGCTTACACACCTT...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAATGGAGGGCAGGGTTTaGAGGTCAGTCAGGATGACT +
Preference number: 2 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVMEGRV*RSVRMT
Trigger: AGTCATCCTGACTGACCTGCAAACCCTGCCCTCCAT...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp CCTCCTAGGGCTTTACAAGACCATCAAGAAATGAAACTCAAAGAAGAGCAAACAGGTCCACTTGTGTCCTaGCCAGCCCACTTCTTACCA +
Preference number: 2 (lower is better)
Translates to: PPRALQDHQEMKLKEEQTGPLVS*PAHFLP
Trigger: TGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC...TGTTTGCTCTTCTTTGAGTTTCATTTCTTGATGGTCTTGTAAAGCCCTAGGAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAGGCATCATAAGAATGTaGTCCTCAGACCCACTGGGT +
Preference number: 2 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVGIIRM*SSDPLG
Trigger: ACCCAGTGGGTCTGAGGATCACATTCTTATGATGCC...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp CTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATACAGACCCACTGGGTGTaGTCCACTGTGTCTGAGCAT +
Preference number: 2 (lower is better)
Translates to: LRISDLMERTTEWNGRNIQTHWV*STVSEH
Trigger: ATGCTCAGACACAGTGGAGCACACCCAGTGGGTCTG...TATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp CTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAATGCTTAGGACTCCCTaGATGTGGGAGAGGGAGCAC +
Preference number: 2 (lower is better)
Translates to: LRISDLMERTTEWNGRNIMLRTP*MWEREH
Trigger: GTGCTCCCTCTCCCACATGCAGGGAGTCCTAAGCAT...TATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp ACGTCACATCTTGCTGCTCTTTATAAGGACTTGAATGCTGAAGGGTACCTGTGGTTGTTCCAGCAGCAATaGTTTCCCCAACACAAGTGT +
Preference number: 2 (lower is better)
Translates to: TSHLAALYKDLNAEGYLWLFQQQ*FPQHKC
Trigger: ACACTTGTGTTGGGGAAAGCATTGCTGCTGGAACAA...CCACAGGTACCCTTCAGCATTCAAGTCCTTATAAAGAGCAGCAAGATGTGACGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp CTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGCATGCTTGTCTGCCTaGTGGCTGTTTTCAGGGAGC +
Preference number: 2 (lower is better)
Translates to: LRISDLMERTTEWNGRNIACLSA*WLFSGS
Trigger: GCTCCCTGAAAACAGCCAGCAGGCAGACAAGCATGC...TATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR-3UTR TCA 90 bp TTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTCCAAACATCCCACTGTaGATTTATGCTACACTGCTG +
Preference number: 2 (lower is better)
Translates to: FSIRMPGPSVPSVLGKWVPNIPL*IYATLL
Trigger: CAGCAGTGTAGCATAAATTCACAGTGGGATGTTTGG...AACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp AGAAAGACAGCTATTAAAAATGGCAGTTTACTAGTCACGAGCTTGTTCCAGCAGTCTTCCTCTTGGAGCTaGTCCTTAACCCCAGCCTTT +
Preference number: 2 (lower is better)
Translates to: RKTAIKNGSLLVTSLFQQSSSWS*SLTPAF
Trigger: AAAGGCTGGGGTTAAGGATCAGCTCCAAGAGGAAGA...CTGCTGGAACAAGCTCGTGACTAGTAAACTGCCATTTTTAATAGCTGTCTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGACAGACCCACTGGGTGTaGTCCACTGTGTCTGAGCAT +
Preference number: 2 (lower is better)
Translates to: KEQLRISDLMERTTEWNGQTHWV*STVSEH
Trigger: ATGCTCAGACACAGTGGAGCACACCCAGTGGGTCTG...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAAGGTGTGTAAGCTCTaGACTGGAGTGATGCTGACA +
Preference number: 2 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVKVCKL*TGVMLT
Trigger: TGTCAGCATCACTCCAGTGCAGAGCTTACACACCTT...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGATGGAGGGCAGGGTTTaGAGGTCAGTCAGGATGACT +
Preference number: 2 (lower is better)
Translates to: LNKEQLRISDLMERTTEWMEGRV*RSVRMT
Trigger: AGTCATCCTGACTGACCTGCAAACCCTGCCCTCCAT...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR CAA 90 bp TTTAGAAAGACAGCTATTAAAAATGGCAGTTTACTAGTCACGAGCTaGTTCCAGCAGCAATGCTTTCCCCAACACAAGTGTTCCGTGAGG +
Preference number: 2 (lower is better)
Translates to: FRKTAIKNGSLLVTS*FQQQCFPQHKCSVR
Trigger: CCTCACGGAACACTTGTGTTGGGGAAAGCATTGCTGCTGGAACAAGCTCGTGACTAGTAAACTGCCATTTTTAATAGCTGTCTTTCTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGGGCATCATAAGAATGTaGTCCTCAGACCCACTGGGT +
Preference number: 2 (lower is better)
Translates to: LNKEQLRISDLMERTTEWGIIRM*SSDPLG
Trigger: ACCCAGTGGGTCTGAGGATCACATTCTTATGATGCC...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp TTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTTTTATGCTACACTGCTaGAAACAGTTAACGGCATCC +
Preference number: 2 (lower is better)
Translates to: FSIRMPGPSVPSVLGKWVFMLHC*KQLTAS
Trigger: GGATGCCGTTAACTGTTTTCAGCAGTGTAGCATAAA...AACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTACCAAACATCCCACTGTaGATTTATGCTACACTGCTG +
Preference number: 2 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVPNIPL*IYATLL
Trigger: CAGCAGTGTAGCATAAATTCACAGTGGGATGTTTGG...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGTCTTCCTCTTGGAGCTaGTCCTTAACCCCAGCCTTT +
Preference number: 2 (lower is better)
Translates to: LNKEQLRISDLMERTTEWSSSWS*SLTPAF
Trigger: AAAGGCTGGGGTTAAGGATCAGCTCCAAGAGGAAGA...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp AAGTCCCCTCCTAGGGCTTTACAAGACCATCAAGAAATGAAACTCAAAGAAGAGACTAATTTACTTCAGTaGCTAAACCCTGAGCAGGCC +
Preference number: 2 (lower is better)
Translates to: KSPPRALQDHQEMKLKEETNLLQ*LNPEQA
Trigger: GGCCTGCTCAGGGTTTAGTCACTGAAGTAAATTAGT...CTCTTCTTTGAGTTTCATTTCTTGATGGTCTTGTAAAGCCCTAGGAGGGGACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp ACGTCACATCTTGCTGCTCTTTATAAGGACTTGAATGCTGAAGGGTACCTGTGGTCTCATAACCTTTTCTaGAGCAAAGGAGCCATTCTA +
Preference number: 2 (lower is better)
Translates to: TSHLAALYKDLNAEGYLWSHNLF*SKGAIL
Trigger: TAGAATGGCTCCTTTGCTTCAGAAAAGGTTATGAGA...CCACAGGTACCCTTCAGCATTCAAGTCCTTATAAAGAGCAGCAAGATGTGACGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp TTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTTTCATGTCTAGAAACTaGTGGAAACCGAGGAAACAC +
Preference number: 2 (lower is better)
Translates to: FSIRMPGPSVPSVLGKWVFMSRN*WKPRKH
Trigger: GTGTTTCCTCGGTTTCCAGCAGTTTCTAGACATGAA...AACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAATGTCTAGAAACTGCTaGAAACCGAGGAAACACGTG +
Preference number: 2 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVMSRNC*KPRKHV
Trigger: CACGTGTTTCCTCGGTTTCCAGCAGTTTCTAGACAT...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp GAAATGAAACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTGAGTCCAGTGAGCACCGTGAGTTGTaGTGGAATCCCATTTCTATC +
Preference number: 2 (lower is better)
Translates to: EMKLKEEQTSLEKTLESSEHREL*WNPISI
Trigger: GATAGAAATGGGATTCCATCACAACTCACGGTGCTC...ACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGTTTCATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGGAGCACCGTGAGTTGTaGTGGAATCCCATTTCTATC +
Preference number: 2 (lower is better)
Translates to: LNKEQLRISDLMERTTEWEHREL*WNPISI
Trigger: GATAGAAATGGGATTCCATCACAACTCACGGTGCTC...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAGGCATCATAAGAATGTaGTCCTCAGACCCACTGGGT +
Preference number: 2 (lower is better)
Translates to: KEQLRISDLMERTTEWNGGIIRM*SSDPLG
Trigger: ACCCAGTGGGTCTGAGGATCACATTCTTATGATGCC...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp CCTCCTAGGGCTTTACAAGACCATCAAGAAATGAAACTCAAAGAAGAGCAAACACCAAACATCCCACTGTaGATTTATGCTACACTGCTG +
Preference number: 2 (lower is better)
Translates to: PPRALQDHQEMKLKEEQTPNIPL*IYATLL
Trigger: CAGCAGTGTAGCATAAATTCACAGTGGGATGTTTGG...TGTTTGCTCTTCTTTGAGTTTCATTTCTTGATGGTCTTGTAAAGCCCTAGGAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGCCAAACATCCCACTGTaGATTTATGCTACACTGCTG +
Preference number: 2 (lower is better)
Translates to: RISDLMERTTEWNGRNIVPNIPL*IYATLL
Trigger: CAGCAGTGTAGCATAAATTCACAGTGGGATGTTTGG...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp CCTCCTAGGGCTTTACAAGACCATCAAGAAATGAAACTCAAAGAAGAGCAAACAACTAATTTACTTCAGTaGCTAAACCCTGAGCAGGCC +
Preference number: 2 (lower is better)
Translates to: PPRALQDHQEMKLKEEQTTNLLQ*LNPEQA
Trigger: GGCCTGCTCAGGGTTTAGTCACTGAAGTAAATTAGT...TGTTTGCTCTTCTTTGAGTTTCATTTCTTGATGGTCTTGTAAAGCCCTAGGAGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGTTGTTCCAGCAGCAATaGTTTCCCCAACACAAGTGT +
Preference number: 2 (lower is better)
Translates to: RISDLMERTTEWNGRNIVLFQQQ*FPQHKC
Trigger: ACACTTGTGTTGGGGAAAGCATTGCTGCTGGAACAA...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAGAGCACCGTGAGTTGTaGTGGAATCCCATTTCTATC +
Preference number: 2 (lower is better)
Translates to: KEQLRISDLMERTTEWNGEHREL*WNPISI
Trigger: GATAGAAATGGGATTCCATCACAACTCACGGTGCTC...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGTTTATGCTACACTGCTaGAAACAGTTAACGGCATCC +
Preference number: 2 (lower is better)
Translates to: RISDLMERTTEWNGRNIVFMLHC*KQLTAS
Trigger: GGATGCCGTTAACTGTTTTCAGCAGTGTAGCATAAA...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAAATGCATGCTTGTCTaGCTGCTGGCTGTTTTCAGG +
Preference number: 2 (lower is better)
Translates to: KEQLRISDLMERTTEWNGKCMLV*LLAVFR
Trigger: CCTGAAAACAGCCAGCAGGCAGACAAGCATGCATTT...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR CAA 90 bp GTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTTAGCTCAGTTTaGGGAAAAGCTATTTATATCTTCAAACAAACTGACTCAGGAGTT +
Preference number: 2 (lower is better)
Translates to: VPSVLGKWVRPVSSV*GKAIYIFKQTDSGV
Trigger: AACTCCTGAGTCAGTTTGTTTGAAGATATAAATAGCTTTTCCCAAAACTGAGCTAACTGGCCTAACCCACTTACCAAGTACAGAAGGAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGTTTATGCTACACTGCTaGAAACAGTTAACGGCATCC +
Preference number: 2 (lower is better)
Translates to: LNKEQLRISDLMERTTEWFMLHC*KQLTAS
Trigger: GGATGCCGTTAACTGTTTTCAGCAGTGTAGCATAAA...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp AGAAAGACAGCTATTAAAAATGGCAGTTTACTAGTCACGAGCTTGTTCCAGCAGTCTCATAACCTTTTCTaGAGCAAAGGAGCCATTCTA +
Preference number: 2 (lower is better)
Translates to: RKTAIKNGSLLVTSLFQQSHNLF*SKGAIL
Trigger: TAGAATGGCTCCTTTGCTTCAGAAAAGGTTATGAGA...CTGCTGGAACAAGCTCGTGACTAGTAAACTGCCATTTTTAATAGCTGTCTTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR GCA 90 bp GAAATGAAACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTGAGTCCAGTAGAAATGCAGATGTTTaGCAGACTACAGAGTCTGCA +
Preference number: 2 (lower is better)
Translates to: EMKLKEEQTSLEKTLESSRNADV*QTTESA
Trigger: TGCAGACTCTGTAGTCTGGCAAACATCTGCATTTCT...ACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGTTTCATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAATGTCTAGAAACTGCTaGAAACCGAGGAAACACGTG +
Preference number: 2 (lower is better)
Translates to: KEQLRISDLMERTTEWNGMSRNC*KPRKHV
Trigger: CACGTGTTTCCTCGGTTTCCAGCAGTTTCTAGACAT...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp GAAATGAAACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTGAGTCCAGTGAGAGAACGACAGAATaGAATGGAAGGAACATAGTG +
Preference number: 2 (lower is better)
Translates to: EMKLKEEQTSLEKTLESSERTTE*NGRNIV
Trigger: CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTC...ACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGTTTCATTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CCA 90 bp CTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGAGAGAACGACAGAATaGAATGGAAGGAACATAGTG +
Preference number: 2 (lower is better)
Translates to: LRISDLMERTTEWNGRNIERTTE*NGRNIV
Trigger: CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTC...TATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR TCA 90 bp GAAATGAAACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTGAGTCCAGTTCTCATAACCTTTTCTaGAGCAAAGGAGCCATTCTA +
Preference number: 2 (lower is better)
Translates to: EMKLKEEQTSLEKTLESSSHNLF*SKGAIL
Trigger: TAGAATGGCTCCTTTGCTTCAGAAAAGGTTATGAGA...ACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGTTTCATTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR GCA 72 bp GCCTCTGAACGGCTTGAACTGGCTCCGCGATCCCTCTaGCATCTCGCCCGAGGCCTGACCCGGGTGTCCATC +
Preference number: 3 (lower is better)
Translates to: ASERLELAPRSL*HLARGLTRVSI
Trigger: GATGGACACCCGGGTCAGGCCTCGGGCGAGATGGCAGAGGGATCGCGGAGCCAGTTCAAGCCGTTCAGAGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR TCA 72 bp CGCCCGAGGCCTGACCCGGGTGTCCATCCCATACTCTaGAGCATGCGGTTCCCGATGTTGCTCTCTAGGATC +
Preference number: 3 (lower is better)
Translates to: RPRPDPGVHPIL*SMRFPMLLSRI
Trigger: GATCCTAGAGAGCAACATCGGGAACCGCATGCTTCAGAGTATGGGATGGACACCCGGGTCAGGCCTCGGGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR GCA 72 bp CTCAAACACAGGGTCGGGCAGGTTGGTGTCCAGCTCTaGTGGCTCATCCTTTTCCCACCAGGGCACGACTCC +
Preference number: 3 (lower is better)
Translates to: LKHRVGQVGVQL*WLILFPPGHDS
Trigger: GGAGTCGTGCCCTGGTGGGAAAAGGATGAGCCAGCAGAGCTGGACACCAACCTGCCCGACCCTGTGTTTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
3UTR CCA 72 bp CAAGCCTTCCCGGACATGCTTAGGACTCCCTGCATGTaGGAGAGGGAGCACGTGGGAGAGAGGAGGACCACA +
Preference number: 3 (lower is better)
Translates to: QAFPDMLRTPCM*EREHVGERRTT
Trigger: TGTGGTCCTCCTCTCTCCCACGTGCTCCCTCTCCCACATGCAGGGAGTCCTAAGCATGTCCGGGAAGGCTTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR CCA 72 bp TCGGCTGGGCGTTCTCACCCACAATTCCTGCTGCAGTaGGTCCAGGCAACGGGGCAGCTTTCCTTCTCCTTT +
Preference number: 3 (lower is better)
Translates to: SAGRSHPQFLLQ*VQATGQLSFSF
Trigger: AAAGGAGAAGGAAAGCTGCCCCGTTGCCTGGACCCACTGCAGCAGGAATTGTGGGTGAGAACGCCCAGCCGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR-3UTR CAA 90 bp GCAGAACCTCTCAATCCTGTCTGTCCACCGCAAACTAACACGGCTGCAGTGCACCAGCTCGTGAGGACCTaGCTGCAGAAGCTGCAGCAG +
Preference number: 3 (lower is better)
Translates to: AEPLNPVCPPQTNTAAVHQLVRT*LQKLQQ
Trigger: CTGCTGCAGCTTCTGCAGCAAGGTCCTCACGAGCTG...GTGCACTGCAGCCGTGTTAGTTTGCGGTGGACAGACAGGATTGAGAGGTTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp GAACTGGCTCCGCGATCCCTCTGCCATCTCGCCCGAGGCCTGACCCGGGTGTCCCTGGAAAAACAGCTTTaGGTCTTTTCCTCTTCACAA +
Preference number: 3 (lower is better)
Translates to: ELAPRSLCHLARGLTRVSLEKQL*VFSSSQ
Trigger: TTGTGAAGAGGAAAAGACCAAAAGCTGTTTTTCCAG...GGACACCCGGGTCAGGCCTCGGGCGAGATGGCAGAGGGATCGCGGAGCCAGTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR GCA 72 bp AGGGAAGTGAGCTCACTAAGCAAGCCTTCCCGGACATaGTTAGGACTCCCTGCATGTGGGAGAGGGAGCACG +
Preference number: 3 (lower is better)
Translates to: REVSSLSKPSRT*LGLPACGRGST
Trigger: CGTGCTCCCTCTCCCACATGCAGGGAGTCCTAAGCATGTCCGGGAAGGCTTGCTTAGTGAGCTCACTTCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR TCA 72 bp AGCTGCAGCAGAGGGTTCACATTGTCTGGAGGGCAGTaGTGGGAAGTGCCCAGAGAGAGCAGTTTTGGAGGC +
Preference number: 3 (lower is better)
Translates to: SCSRGFTLSGGQ*WEVPRESSFGG
Trigger: GCCTCCAAAACTGCTCTCTCTGGGCACTTCCCATCACTGCCCTCCAGACAATGTGAACCCTCTGCTGCAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR CCA 72 bp ATCCCATTTCTATCACTGGCGGGACGCTATGCAGCCTaGAAGCTAGCTGGAGGCAACGTCAGAGGTCGGCTT +
Preference number: 3 (lower is better)
Translates to: IPFLSLAGRYAA*KLAGGNVRGRL
Trigger: AAGCCGACCTCTGACGTTGCCTCCAGCTAGCTTCCAGGCTGCATAGCGTCCCGCCAGTGATAGAAATGGGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp TTTGGCTACCGTAGGGAGTGGATGGGAAGGGAAGAGACCCTAACTGACTGGCTTCCAGAGAGAGCAGTTTaGGAGGCCCAGTGCTCAGCA +
Preference number: 3 (lower is better)
Translates to: FGYRREWMGREETLTDWLPERAV*EAQCSA
Trigger: TGCTGAGCACTGGGCCTCCAAAACTGCTCTCTCTGG...AAGCCAGTCAGTTAGGGTCTCTTCCCTTCCCATCCACTCCCTACGGTAGCCAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR CCA 72 bp CAGGGTAAGGACACAGCAGCTGATTTCTCTGGAGACTaGAGCCAAGCGTTCAGTGGCCTCACTGTTTCTCGC +
Preference number: 3 (lower is better)
Translates to: QGKDTAADFSGD*SQAFSGLTVSR
Trigger: GCGAGAAACAGTGAGGCCACTGAACGCTTGGCTCCAGTCTCCAGAGAAATCAGCTGCTGTGTCCTTACCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR CCA 72 bp AGGGAGTGGATGGGAAGGGAAGAGACCCTAACTGACTaGCTTGCAGAACAACAGGGTGGACTCATGAGGAAG +
Preference number: 3 (lower is better)
Translates to: REWMGREETLTD*LAEQQGGLMRK
Trigger: CTTCCTCATGAGTCCACCCTGTTGTTCTGCAAGCCAGTCAGTTAGGGTCTCTTCCCTTCCCATCCACTCCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp GAATGTGATCCTCAGACCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACCACTCTTCTTCCTCTaGGAGCTGATCCTTAACCCC +
Preference number: 3 (lower is better)
Translates to: ECDPQTHWVCSTVSEHHVPLFFL*ELILNP
Trigger: GGGGTTAAGGATCAGCTCCAAGAGGAAGAAGAGTGG...TACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGGTCTGAGGATCACATTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR GCA 72 bp GTCTGCATAATCATTGCAGCCAGTCCCAAACTGCTGTaGTCAAACACGGTGCCCAATTTCCAGGTAAGGGGC +
Preference number: 3 (lower is better)
Translates to: VCIIIAASPKLL*SNTVPNFQVRG
Trigger: GCCCCTTACCTGGAAATTGGGCACCGTGTTTGAGCACAGCAGTTTGGGACTGGCTGCAATGATTATGCAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR CCA 72 bp TTCTTCCTCTTGGAGCTGATCCTTAACCCCAGCCTTTaGGGAGAGGTAGACATATGGAGGGCAGGGTTTGCA +
Preference number: 3 (lower is better)
Translates to: FFLLELILNPSL*GEVDIWRAGFA
Trigger: TGCAAACCCTGCCCTCCATATGTCTACCTCTCCCCAAAGGCTGGGGTTAAGGATCAGCTCCAAGAGGAAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR CCA 72 bp ACAGCTATGCTCCGATTCTTTGGCTACCGTAGGGAGTaGATGGGAAGGGAAGAGACCCTAACTGACTGGCTT +
Preference number: 3 (lower is better)
Translates to: TAMLRFFGYRRE*MGREETLTDWL
Trigger: AAGCCAGTCAGTTAGGGTCTCTTCCCTTCCCATCCACTCCCTACGGTAGCCAAAGAATCGGAGCATAGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR CCA 72 bp CGACTGAGTCTAGCTTGGAAACCTCCTCTGCCAGGATaGGACATGAGAGGGAAGGAGCCACTTAAGATACTC +
Preference number: 3 (lower is better)
Translates to: RLSLAWKPPLPG*DMRGKEPLKIL
Trigger: GAGTATCTTAAGTGGCTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
3UTR-3UTR CAA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGCCACTCTTCTTCCTCTaGGAGCTGATCCTTAACCCC +
Preference number: 3 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQPLFFL*ELILNP
Trigger: GGGGTTAAGGATCAGCTCCAAGAGGAAGAAGAGTGG...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp GCAGAACCTCTCAATCCTGTCTGTCCACCGCAAACTAACACGGCTGCAGTGCACCAGGGACGTCACATCTaGCTGCTCTTTATAAGGACT +
Preference number: 3 (lower is better)
Translates to: AEPLNPVCPPQTNTAAVHQGRHI*LLFIRT
Trigger: AGTCCTTATAAAGAGCAGCAAGATGTGACGTCCCTG...GTGCACTGCAGCCGTGTTAGTTTGCGGTGGACAGACAGGATTGAGAGGTTCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR TCA 72 bp GAAGGGTTGAGGTTCGTACTTGAGCACCGTGAGTTGTaGTGGAATCCCATTTCTATCACTGGCGGGACGCTA +
Preference number: 3 (lower is better)
Translates to: EGLRFVLEHREL*WNPISITGGTL
Trigger: TAGCGTCCCGCCAGTGATAGAAATGGGATTCCATCACAACTCACGGTGCTCAAGTACGAACCTCAACCCTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR TCA 72 bp AGGACCACACTACTTAGTGTCGGCATCATAAGAATGTaGTCCTCAGACCCACTGGGTGTGCTCCACTGTGTC +
Preference number: 3 (lower is better)
Translates to: RTTLLSVGIIRM*SSDPLGVLHCV
Trigger: GACACAGTGGAGCACACCCAGTGGGTCTGAGGATCACATTCTTATGATGCCGACACTAAGTAGTGTGGTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp CAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGACAGTTCCTAGAAGAAATCCACTCTTCTTCCTCTaGGAGCTGATCCTTAACCCC +
Preference number: 3 (lower is better)
Translates to: QPTSYHGHFSGKTVPRRNPLFFL*ELILNP
Trigger: GGGGTTAAGGATCAGCTCCAAGAGGAAGAAGAGTGG...ATTTCTTCTAGGAACTGTCTTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR TCA 72 bp AGAAACTGCTGGAAACCGAGGAAACACGTGAAGGGTTaGGGTTCGTACTTGAGCACCGTGAGTTGTGATGGA +
Preference number: 3 (lower is better)
Translates to: RNCWKPRKHVKG*GSYLSTVSCDG
Trigger: TCCATCACAACTCACGGTGCTCAAGTACGAACCTCAACCCTTCACGTGTTTCCTCGGTTTCCAGCAGTTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR GCA 72 bp GGCAGTTTACTAGTCACGAGCTTGTTCCAGCAGCAATaGTTTCCCCAACACAAGTGTTCCGTGAGGCACAAA +
Preference number: 3 (lower is better)
Translates to: GSLLVTSLFQQQ*FPQHKCSVRHK
Trigger: TTTGTGCCTCACGGAACACTTGTGTTGGGGAAAGCATTGCTGCTGGAACAAGCTCGTGACTAGTAAACTGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR GCA 72 bp CCGCGTGCACACATACTCAAGCACGCATGTTTAACCTaGTGTCTCAACTCTGTCTGCATAATCATTGCAGCC +
Preference number: 3 (lower is better)
Translates to: PRAHILKHACLT*CLNSVCIIIAA
Trigger: GGCTGCAATGATTATGCAGACAGAGTTGAGACAGCAGGTTAAACATGCGTGCTTGAGTATGTGTGCACGCGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR GCA 72 bp TCTCCTGTGCACAAGGATCCTAAATGCATGCTTGTCTaGCTGCTGGCTGTTTTCAGGGAGCAGCTTTTCTTG +
Preference number: 3 (lower is better)
Translates to: SPVHKDPKCMLV*LLAVFREQLFL
Trigger: CAAGAAAAGCTGCTCCCTGAAAACAGCCAGCAGGCAGACAAGCATGCATTTAGGATCCTTGTGCACAGGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR CCA 72 bp GGACTTACGGCAGTCCTGCCTCAATCTTCCAACTTCTaGGTGGGTGTTAGCATAGCTGCCCACTTTAAAAGT +
Preference number: 3 (lower is better)
Translates to: GLTAVLPQSSNF*VGVSIAAHFKS
Trigger: ACTTTTAAAGTGGGCAGCTATGCTAACACCCACCCAGAAGTTGGAAGATTGAGGCAGGACTGCCGTAAGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp GGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAAACCAGTTAGCTCAGTTTaGGGAAAAGCTATTTATATC +
Preference number: 3 (lower is better)
Translates to: GPLVSWPAHFLPRPLLRKPVSSV*GKAIYI
Trigger: GATATAAATAGCTTTTCCCAAAACTGAGCTAACTGG...TTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGACAAACGGGGTCCACTaGTGTCCTGGCCAGCCCACT +
Preference number: 3 (lower is better)
Translates to: RISDLMERTTEWNGRNIVTNGVH*CPGQPT
Trigger: AGTGGGCTGGCCAGGACACAAGTGGACCCCGTTTGT...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp TTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTCCACTCTTCTTCCTCTaGGAGCTGATCCTTAACCCC +
Preference number: 3 (lower is better)
Translates to: FSIRMPGPSVPSVLGKWVPLFFL*ELILNP
Trigger: GGGGTTAAGGATCAGCTCCAAGAGGAAGAAGAGTGG...AACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp TTTGGCTACCGTAGGGAGTGGATGGGAAGGGAAGAGACCCTAACTGACTGGCTTGAAGTTCATACTGCTTaGTTCAAGCATACACTAGTA +
Preference number: 3 (lower is better)
Translates to: FGYRREWMGREETLTDWLEVHTA*FKHTLV
Trigger: TACTAGTGTATGCTTGAACAAAGCAGTATGAACTTC...AAGCCAGTCAGTTAGGGTCTCTTCCCTTCCCATCCACTCCCTACGGTAGCCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR GCA 72 bp TTTAACCTGCTGTCTCAACTCTGTCTGCATAATCATTaGAGCCAGTCCCAAACTGCTGTGCTCAAACACGGT +
Preference number: 3 (lower is better)
Translates to: FNLLSQLCLHNH*SQSQTAVLKHG
Trigger: ACCGTGTTTGAGCACAGCAGTTTGGGACTGGCTGCAATGATTATGCAGACAGAGTTGAGACAGCAGGTTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp ACGTCACATCTTGCTGCTCTTTATAAGGACTTGAATGCTGAAGGGTACCTGTGGGAAGAGCAAACAAGTTaGGAAAAGACCCTTGAGTCC +
Preference number: 3 (lower is better)
Translates to: TSHLAALYKDLNAEGYLWEEQTS*EKTLES
Trigger: GGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTC...CCACAGGTACCCTTCAGCATTCAAGTCCTTATAAAGAGCAGCAAGATGTGACGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAGGGAGCAGCTTTTCTaGTGTCCTCTTTCCGCTCGG +
Preference number: 3 (lower is better)
Translates to: LNKEQLRISDLMERTTEWREQLF*CPLSAR
Trigger: CCGAGCGGAAAGAGGACACAAGAAAAGCTGCTCCCT...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR-3UTR CAA 90 bp GAAATGAAACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTGAGTCCAGTCCACTCTTCTTCCTCTaGGAGCTGATCCTTAACCCC +
Preference number: 3 (lower is better)
Translates to: EMKLKEEQTSLEKTLESSPLFFL*ELILNP
Trigger: GGGGTTAAGGATCAGCTCCAAGAGGAAGAAGAGTGG...ACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGTTTCATTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR TCA 72 bp ACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTaGGTCCAGTACACGGTTAGTCTCTTCGATCTTCCC +
Preference number: 3 (lower is better)
Translates to: TQRRANKFGKDP*VQYTVSLFDLP
Trigger: GGGAAGATCGAAGAGACTAACCGTGTACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR GCA 72 bp CCTTTGGGGAGAGGTAGACATATGGAGGGCAGGGTTTaGAGGTCAGTCAGGATGACTTTAAAAATACATTTT +
Preference number: 3 (lower is better)
Translates to: PLGRGRHMEGRV*RSVRMTLKIHF
Trigger: AAAATGTATTTTTAAAGTCATCCTGACTGACCTGCAAACCCTGCCCTCCATATGTCTACCTCTCCCCAAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR CCA 72 bp GGTGCCCAATTTCCAGGTAAGGGGCACTTACTAACGTaGTTTCCATTGATATTTACTTTTGACACGGGTATC +
Preference number: 3 (lower is better)
Translates to: GAQFPGKGHLLT*FPLIFTFDTGI
Trigger: GATACCCGTGTCAAAAGTAAATATCAATGGAAACCACGTTAGTAAGTGCCCCTTACCTGGAAATTGGGCACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp CAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGACAGTTCCTAGAAGAAATGAAGTTCATACTGCTTaGTTCAAGCATACACTAGTA +
Preference number: 3 (lower is better)
Translates to: QPTSYHGHFSGKTVPRRNEVHTA*FKHTLV
Trigger: TACTAGTGTATGCTTGAACAAAGCAGTATGAACTTC...ATTTCTTCTAGGAACTGTCTTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGCCAGTGGCCAGTAAATaGTTTCCTAAAAGGATTAAC +
Preference number: 3 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKPVASK*FPKRIN
Trigger: GTTAATCCTTTTAGGAAACAATTTACTGGCCACTGG...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR-3UTR CAA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGCCAGTTAGCTCAGTTTaGGGAAAAGCTATTTATATC +
Preference number: 3 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKPVSSV*GKAIYI
Trigger: GATATAAATAGCTTTTCCCAAAACTGAGCTAACTGG...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGATGGTGGGGGAGCTTTTaGGTAGAGGAAATCCAAGTC +
Preference number: 3 (lower is better)
Translates to: KEQLRISDLMERTTEWNGWWGSF*VEEIQV
Trigger: GACTTGGATTTCCTCTACCAAAAAGCTCCCCCACCA...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR TCA 72 bp AACAAACTGACTCAGGAGTTTACTAATTTACTTCAGTaGCTAAACCCTGAGCAGGCCACTCTTCTTCCTCTT +
Preference number: 3 (lower is better)
Translates to: NKLTQEFTNLLQ*LNPEQATLLPL
Trigger: AAGAGGAAGAAGAGTGGCCTGCTCAGGGTTTAGTCACTGAAGTAAATTAGTAAACTCCTGAGTCAGTTTGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR CCA 72 bp ACATTTCCTATTTTAATTGTGTTTACTTCTCAGCTATaGTCAGGTATGCCAGGGACGTCACATCTTGCTGCT +
Preference number: 3 (lower is better)
Translates to: TFPILIVFTSQL*SGMPGTSHLAA
Trigger: AGCAGCAAGATGTGACGTCCCTGGCATACCTGACCATAGCTGAGAAGTAAACACAATTAAAATAGGAAATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGCCAGTTAGCTCAGTTTaGGGAAAAGCTATTTATATC +
Preference number: 3 (lower is better)
Translates to: RISDLMERTTEWNGRNIVPVSSV*GKAIYI
Trigger: GATATAAATAGCTTTTCCCAAAACTGAGCTAACTGG...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR-3UTR CAA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGACCAGTTAGCTCAGTTTaGGGAAAAGCTATTTATATC +
Preference number: 3 (lower is better)
Translates to: KEQLRISDLMERTTEWNGPVSSV*GKAIYI
Trigger: GATATAAATAGCTTTTCCCAAAACTGAGCTAACTGG...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR CCA 72 bp CTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATaGAATGGAAGGAACATAGTGTTTCGCTTAATTTTA +
Preference number: 3 (lower is better)
Translates to: LRISDLMERTTE*NGRNIVFRLIL
Trigger: TAAAATTAAGCGAAACACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR TCA 90 bp GAACTGGCTCCGCGATCCCTCTGCCATCTCGCCCGAGGCCTGACCCGGGTGTCCCTTCCATTGTTCGACTaGAATGCCAGCTCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: ELAPRSLCHLARGLTRVSLPLFD*NASSSR
Trigger: CCGGGAAGAGCTGGCATTTCAGTCGAACAATGGAAG...GGACACCCGGGTCAGGCCTCGGGCGAGATGGCAGAGGGATCGCGGAGCCAGTTC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp CCTTTTCCCACCAGGGCACGACTCCAGCAATCCCGCACGCTCCGCCTGACTCCTTTGCTGGAGACGTCCTaGGGGAGATCCACGGCCATG +
Preference number: 4 (lower is better)
Translates to: PFPTRARLQQSRTLRLTPLLETS*GRSTAM
Trigger: CATGGCCGTGGATCTCCCGCAGGACGTCTCCAGCAA...AGGAGTCAGGCGGAGCGTGCGGGATTGCTGGAGTCGTGCCCTGGTGGGAAAAGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR GCA 90 bp GAACTGGCTCCGCGATCCCTCTGCCATCTCGCCCGAGGCCTGACCCGGGTGTCCGTTGGTGTCCAGCTCTaGTGGCTCATCCTTTTCCCA +
Preference number: 4 (lower is better)
Translates to: ELAPRSLCHLARGLTRVSVGVQL*WLILFP
Trigger: TGGGAAAAGGATGAGCCAGCAGAGCTGGACACCAAC...GGACACCCGGGTCAGGCCTCGGGCGAGATGGCAGAGGGATCGCGGAGCCAGTTC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp CGGGGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGGGAGATCCACGGCCATaGGCTTCACCTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: RGPLVSWPAHFLPRPLLRGDPRP*ASPSSS
Trigger: GGAGGAGGAAGGTGAAGCGCATGGCCGTGGATCTCC...CCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR GCA 90 bp CGGGGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGTTGCTGGAGACGTCCTaGGGGAGATCCACGGCCATG +
Preference number: 4 (lower is better)
Translates to: RGPLVSWPAHFLPRPLLRLLETS*GRSTAM
Trigger: CATGGCCGTGGATCTCCCGCAGGACGTCTCCAGCAA...CCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CCA 90 bp GAACTGGCTCCGCGATCCCTCTGCCATCTCGCCCGAGGCCTGACCCGGGTGTCCCTTCCGGGTAAACTCTaGATACTGGCTGGCTCTATC +
Preference number: 4 (lower is better)
Translates to: ELAPRSLCHLARGLTRVSLPGKL*ILAGSI
Trigger: GATAGAGCCAGCCAGTATCCAGAGTTTACCCGGAAG...GGACACCCGGGTCAGGCCTCGGGCGAGATGGCAGAGGGATCGCGGAGCCAGTTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCCAGGGTCGGGCAGGTTaGTGTCCAGCTCTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSQGRAG*CPALLA
Trigger: AGCCAGCAGAGCTGGACACCAACCTGCCCGACCCTG...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp ACACAGGGTCGGGCAGGTTGGTGTCCAGCTCTGCTGGCTCATCCTTTTCCCACCGGAGATCCACGGCCATaGGCTTCACCTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: TQGRAGWCPALLAHPFPTGDPRP*ASPSSS
Trigger: GGAGGAGGAAGGTGAAGCGCATGGCCGTGGATCTCC...GGTGGGAAAAGGATGAGCCAGCAGAGCTGGACACCAACCTGCCCGACCCTGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR GCA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCGGAGATCCACGGCCATaGGCTTCACCTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSGDPRP*ASPSSS
Trigger: GGAGGAGGAAGGTGAAGCGCATGGCCGTGGATCTCC...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCCAATTCCTGCTGCAGTaGGTCCAGGCAACGGGGCAG +
Preference number: 4 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSQFLLQ*VQATGQ
Trigger: CTGCCCCGTTGCCTGGACCCACTGCAGCAGGAATTG...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR GCA 90 bp TGCTGGCTCATCCTTTTCCCACCAGGGCACGACTCCAGCAATCCCGCACGCTCCGGGTCATTGTCCTTTTaGTGGAGACGTCCTGCGGGA +
Preference number: 4 (lower is better)
Translates to: CWLILFPPGHDSSNPARSGSLSF*WRRPAG
Trigger: TCCCGCAGGACGTCTCCAGCAAAAGGACAATGACCC...GGAGCGTGCGGGATTGCTGGAGTCGTGCCCTGGTGGGAAAAGGATGAGCCAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CCA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCCTCCTTTTCCGGGCCTaGCGTTTCAGAGGGCAAGAC +
Preference number: 4 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSLLFRA*RFRGQD
Trigger: GTCTTGCCCTCTGAAACGCCAGGCCCGGAAAAGGAG...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp CCTGCATCAAAGAGGCTCACACTTCAGTGTGTCCCTCCCGGGAAGAGGACAGGACAGGGTCGGGCAGGTTaGTGTCCAGCTCTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: PASKRLTLQCVPPGKRTGQGRAG*CPALLA
Trigger: AGCCAGCAGAGCTGGACACCAACCTGCCCGACCCTG...TCCTGTCCTCTTCCCGGGAGGGACACACTGAAGTGTGAGCCTCTTTGATGCAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR GCA 90 bp CTCTGCTGGCTCATCCTTTTCCCACCAGGGCACGACTCCAGCAATCCCGCACGCAATCCACCTCGGGCTTaGTCAGAGCTCTCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: LCWLILFPPGHDSSNPARNPPRA*SELSSS
Trigger: ACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATT...GCGTGCGGGATTGCTGGAGTCGTGCCCTGGTGGGAAAAGGATGAGCCAGCAGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR GCA 90 bp CCTGCATCAAAGAGGCTCACACTTCAGTGTGTCCCTCCCGGGAAGAGGACAGGATTGCTGGAGACGTCCTaGGGGAGATCCACGGCCATG +
Preference number: 4 (lower is better)
Translates to: PASKRLTLQCVPPGKRTGLLETS*GRSTAM
Trigger: CATGGCCGTGGATCTCCCGCAGGACGTCTCCAGCAA...TCCTGTCCTCTTCCCGGGAGGGACACACTGAAGTGTGAGCCTCTTTGATGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR GCA 90 bp CCCAGGGTCAACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGGCTGGAGATCCACGGCCATaGGCTTCACCTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: PRVNLHPRESSQSVSLEAGDPRP*ASPSSS
Trigger: GGAGGAGGAAGGTGAAGCGCATGGCCGTGGATCTCC...AGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGTTGACCCTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR GCA 90 bp CGGGGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAGGATCCTAAATGCATaGTTGTCTGCCTGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: RGPLVSWPAHFLPRPLLRRILNA*LSACWL
Trigger: CAGCCAGCAGGCAGACAAGCATGCATTTAGGATCCT...CCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp GAGTCTAGCTTGGAAACCTCCTCTGCCAGGATGGGACATGAGAGGGAAGGAGCCCTCCTTTTCCGGGCCTaGCGTTTCAGAGGGCAAGAC +
Preference number: 4 (lower is better)
Translates to: ESSLETSSARMGHEREGALLFRA*RFRGQD
Trigger: GTCTTGCCCTCTGAAACGCCAGGCCCGGAAAAGGAG...GGCTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGGTTTCCAAGCTAGACTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CCA 90 bp CAACAGAAACCGCAGGTTCTCTCTCTGCTCAGGCAGGGTTTCCTGATGTGGGGGCTCCTTTTCCGGGCCTaGCGTTTCAGAGGGCAAGAC +
Preference number: 4 (lower is better)
Translates to: QQKPQVLSLLRQGFLMWGLLFRA*RFRGQD
Trigger: GTCTTGCCCTCTGAAACGCCAGGCCCGGAAAAGGAG...CCCCCACATCAGGAAACCCTGCCTGAGCAGAGAGAGAACCTGCGGTTTCTGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp CGGGGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGTTCGCCACTAACATCTaGTCATCAGAGTCACTGCGG +
Preference number: 4 (lower is better)
Translates to: RGPLVSWPAHFLPRPLLRFATNI*SSESLR
Trigger: CCGCAGTGACTCTGATGACCAGATGTTAGTGGCGAA...CCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CCA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCATCTCTGCAGCCTTCTaGCAGCTGGGTCATTGTCCT +
Preference number: 4 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSISAAF*QLGHCP
Trigger: AGGACAATGACCCAGCTGCCAGAAGGCTGCAGAGAT...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp CGGGGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGCTTCCGGGTAAACTCTaGATACTGGCTGGCTCTATC +
Preference number: 4 (lower is better)
Translates to: RGPLVSWPAHFLPRPLLRLPGKL*ILAGSI
Trigger: GATAGAGCCAGCCAGTATCCAGAGTTTACCCGGAAG...CCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR GCA 90 bp CATCCTTTTCCCACCAGGGCACGACTCCAGCAATCCCGCACGCTCCGCCTGACTAGAGCTCTCTTCCAGTaGAGAGACAAGATCGTGAAC +
Preference number: 4 (lower is better)
Translates to: HPFPTRARLQQSRTLRLTRALFQ*RDKIVN
Trigger: GTTCACGATCTTGTCTCTGCACTGGAAGAGAGCTCT...AGTCAGGCGGAGCGTGCGGGATTGCTGGAGTCGTGCCCTGGTGGGAAAAGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR GCA 90 bp ACACTTCAGTGTGTCCCTCCCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGGGGTCATTGTCCTTTTaGTGGAGACGTCCTGCGGGA +
Preference number: 4 (lower is better)
Translates to: TLQCVPPGKRTGARFLRMGSLSF*WRRPAG
Trigger: TCCCGCAGGACGTCTCCAGCAAAAGGACAATGACCC...CATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGGGAGGGACACACTGAAGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR GCA 90 bp GGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGGGTCATTGTCCTTTTaGTGGAGACGTCCTGCGGGA +
Preference number: 4 (lower is better)
Translates to: GPLVSWPAHFLPRPLLRKGSLSF*WRRPAG
Trigger: TCCCGCAGGACGTCTCCAGCAAAAGGACAATGACCC...TTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CCA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCCTTCCGGGTAAACTCTaGATACTGGCTGGCTCTATC +
Preference number: 4 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSLPGKL*ILAGSI
Trigger: GATAGAGCCAGCCAGTATCCAGAGTTTACCCGGAAG...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCCCATCCTGTCCTTGTTaGGCTGGCTTCTTTCTTCAC +
Preference number: 4 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSPSCPC*AGFFLH
Trigger: GTGAAGAAAGAAGCCAGCCCAACAAGGACAGGATGG...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp CACTTCAGTGTGTCCCTCCCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGTAATCCACCTCGGGCTTaGTCAGAGCTCTCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: HFSVSLPGRGQEPGSFECNPPRA*SELSSS
Trigger: ACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATT...ACATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGGGAGGGACACACTGAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR GCA 90 bp GGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAAATCCACCTCGGGCTTaGTCAGAGCTCTCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: GPLVSWPAHFLPRPLLRKNPPRA*SELSSS
Trigger: ACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATT...TTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR GCA 90 bp GCAGAACCTCTCAATCCTGTCTGTCCACCGCAAACTAACACGGCTGCAGTGCACGCATGCTTGTCTGCCTaGTGGCTGTTTTCAGGGAGC +
Preference number: 4 (lower is better)
Translates to: AEPLNPVCPPQTNTAAVHACLSA*WLFSGS
Trigger: GCTCCCTGAAAACAGCCAGCAGGCAGACAAGCATGC...GTGCACTGCAGCCGTGTTAGTTTGCGGTGGACAGACAGGATTGAGAGGTTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000065573.14
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp CCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGGCTAAAAGAGAGACCACCACCCCTTCACTTAAGCAGTaGCCTGTCTCCCACGGGTGG +
Preference number: 4 (lower is better)
Translates to: PRESSQSVSLEAKRETTTPSLKQ*PVSHGW
Trigger: CCACCCGTGGGAGACAGGCCACTGCTTAAGTGAAGG...GGTGGTGGTCTCTCTTTTAGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp AGCCACTTAAGATACTCTCAAACACAGGGTCGGGCAGGTTGGTGTCCAGCTCTGCCTTCACTTAAGCAGTaGCCTGTCTCCCACGGGTGG +
Preference number: 4 (lower is better)
Translates to: SHLRYSQTQGRAGWCPALPSLKQ*PVSHGW
Trigger: CCACCCGTGGGAGACAGGCCACTGCTTAAGTGAAGG...CAGAGCTGGACACCAACCTGCCCGACCCTGTGTTTGAGAGTATCTTAAGTGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CCA 90 bp TTCAGTGTGTCCCTCCCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGTCATACTCCTCCTTCCTCCTaGGTTTTCGGTCCTGGCCTA +
Preference number: 4 (lower is better)
Translates to: FSVSLPGRGQEPGSFECHTPPSS*VFGPGL
Trigger: TAGGCCAGGACCGAAAACCCAGGAGGAAGGAGGAGT...ATGACATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGGGAGGGACACACTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp CCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGTCATTCCCCAGGTGTTCAAGGTGTCCAGCTCTGCTaGCTCATCCTTTTCCCACCA +
Preference number: 4 (lower is better)
Translates to: PGRGQEPGSFECHSPGVQGVQLC*LILFPP
Trigger: TGGTGGGAAAAGGATGAGCCAGCAGAGCTGGACACC...TTGAACACCTGGGGAATGACATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp GAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTTACAGGGTCGGGCAGGTTaGTGTCCAGCTCTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: ECLVPLFLLYLVSGLGQLQGRAG*CPALLA
Trigger: AGCCAGCAGAGCTGGACACCAACCTGCCCGACCCTG...TAACTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp CACTTCAGTGTGTCCCTCCCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGTCGACTGAGTCTAGCTTaGAAACCTCCTCTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: HFSVSLPGRGQEPGSFECRLSLA*KPPLPG
Trigger: TCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCG...ACATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGGGAGGGACACACTGAAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGCAATTCCTGCTGCAGTaGGTCCAGGCAACGGGGCAG +
Preference number: 4 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQQFLLQ*VQATGQ
Trigger: CTGCCCCGTTGCCTGGACCCACTGCAGCAGGAATTG...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR TCA 90 bp AAACCTCCTCTGCCAGGATGGGACATGAGAGGGAAGGAGCCACTTAAGATACTCCCGCGTCAGTGCTGCTaGGACTGCTGGTGTCACTTT +
Preference number: 4 (lower is better)
Translates to: KPPLPGWDMRGKEPLKILPRQCC*DCWCHF
Trigger: AAAGTGACACCAGCAGTCTCAGCAGCACTGACGCGG...GAGTATCTTAAGTGGCTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR TCA 90 bp CACTTCAGTGTGTCCCTCCCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGTTTTGAAGGCGTTCCATaGAGGCGACTGAGTCTAGCT +
Preference number: 4 (lower is better)
Translates to: HFSVSLPGRGQEPGSFECFEGVP*RRLSLA
Trigger: AGCTAGACTCAGTCGCCTTCATGGAACGCCTTCAAA...ACATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGGGAGGGACACACTGAAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR GCA 90 bp TCTCTAGGATCGGCTGGGCGTTCTCACCCACAATTCCTGCTGCAGTGGGTCCAGAGAGCTCTCTTCCAGTaGAGAGACAAGATCGTGAAC +
Preference number: 4 (lower is better)
Translates to: SLGSAGRSHPQFLLQWVQRALFQ*RDKIVN
Trigger: GTTCACGATCTTGTCTCTGCACTGGAAGAGAGCTCT...CTGGACCCACTGCAGCAGGAATTGTGGGTGAGAACGCCCAGCCGATCCTAGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp GAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTTATTGCTGGAGACGTCCTaGGGGAGATCCACGGCCATG +
Preference number: 4 (lower is better)
Translates to: ECLVPLFLLYLVSGLGQLLLETS*GRSTAM
Trigger: CATGGCCGTGGATCTCCCGCAGGACGTCTCCAGCAA...TAACTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp TTTGGCTACCGTAGGGAGTGGATGGGAAGGGAAGAGACCCTAACTGACTGGCTTCCATCCTCTTGTTACTaGCAGGGCCAGGAGCAGACA +
Preference number: 4 (lower is better)
Translates to: FGYRREWMGREETLTDWLPSSCY*QGQEQT
Trigger: TGTCTGCTCCTGGCCCTGGCAGTAACAAGAGGATGG...AAGCCAGTCAGTTAGGGTCTCTTCCCTTCCCATCCACTCCCTACGGTAGCCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp GAATGTGATCCTCAGACCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTAACTCCTCCTTCCTCCTaGGTTTTCGGTCCTGGCCTA +
Preference number: 4 (lower is better)
Translates to: ECDPQTHWVCSTVSEHHVTPPSS*VFGPGL
Trigger: TAGGCCAGGACCGAAAACCCAGGAGGAAGGAGGAGT...TACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGGTCTGAGGATCACATTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp AGCCACTTAAGATACTCTCAAACACAGGGTCGGGCAGGTTGGTGTCCAGCTCTGACTCCTCCTTCCTCCTaGGTTTTCGGTCCTGGCCTA +
Preference number: 4 (lower is better)
Translates to: SHLRYSQTQGRAGWCPALTPPSS*VFGPGL
Trigger: TAGGCCAGGACCGAAAACCCAGGAGGAAGGAGGAGT...CAGAGCTGGACACCAACCTGCCCGACCCTGTGTTTGAGAGTATCTTAAGTGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CCA 90 bp CAACAGAAACCGCAGGTTCTCTCTCTGCTCAGGCAGGGTTTCCTGATGTGGGGGCTGTCCTTGTTGGGCTaGCTTCTTTCTTCACTCTCC +
Preference number: 4 (lower is better)
Translates to: QQKPQVLSLLRQGFLMWGLSLLG*LLSSLS
Trigger: GGAGAGTGAAGAAAGAAGCCAGCCCAACAAGGACAG...CCCCCACATCAGGAAACCCTGCCTGAGCAGAGAGAGAACCTGCGGTTTCTGTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
3UTR CAA 72 bp GGAGTCACACTGCTGACACAGCTATGCTCCGATTCTTaGGCTACCGTAGGGAGTGGATGGGAAGGGAAGAGA +
Preference number: 4 (lower is better)
Translates to: GVTLLTQLCSDS*ATVGSGWEGKR
Trigger: TCTCTTCCCTTCCCATCCACTCCCTACGGTAGCCAAAGAATCGGAGCATAGCTGTGTCAGCAGTGTGACTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
CDS-3UTR TCA 90 bp TCCATGAAGGCGACTGAGTCTAGCTTGGAAACCTCCTCTGCCAGGATGGGACATCTTCCATTGTTCGACTaGAATGCCAGCTCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: SMKATESSLETSSARMGHLPLFD*NASSSR
Trigger: CCGGGAAGAGCTGGCATTTCAGTCGAACAATGGAAG...ATGTCCCATCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCGCCTTCATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR GCA 90 bp CCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGGCTAAAAGAGAGACCACCACCGTTGGTGTCCAGCTCTaGTGGCTCATCCTTTTCCCA +
Preference number: 4 (lower is better)
Translates to: PRESSQSVSLEAKRETTTVGVQL*WLILFP
Trigger: TGGGAAAAGGATGAGCCAGCAGAGCTGGACACCAAC...GGTGGTGGTCTCTCTTTTAGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR GCA 90 bp CATCCTCTAGGGCAGGGTAAGGACACAGCAGCTGATTTCTCTGGAGACTGGAGCAGGATCCTAAATGCATaGTTGTCTGCCTGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: HPLGQGKDTAADFSGDWSRILNA*LSACWL
Trigger: CAGCCAGCAGGCAGACAAGCATGCATTTAGGATCCT...GCTCCAGTCTCCAGAGAAATCAGCTGCTGTGTCCTTACCCTGCCCTAGAGGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp AGGGTCAACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGGCTAAACTCCTTTTCCGGGCCTaGCGTTTCAGAGGGCAAGAC +
Preference number: 4 (lower is better)
Translates to: RVNLHPRESSQSVSLEAKLLFRA*RFRGQD
Trigger: GTCTTGCCCTCTGAAACGCCAGGCCCGGAAAAGGAG...TTTAGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGTTGACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp TCCATGAAGGCGACTGAGTCTAGCTTGGAAACCTCCTCTGCCAGGATGGGACATATCTCTGCAGCCTTCTaGCAGCTGGGTCATTGTCCT +
Preference number: 4 (lower is better)
Translates to: SMKATESSLETSSARMGHISAAF*QLGHCP
Trigger: AGGACAATGACCCAGCTGCCAGAAGGCTGCAGAGAT...ATGTCCCATCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCGCCTTCATGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CCA 90 bp CCCAGGGTCAACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGGCTCCATCCTGTCCTTGTTaGGCTGGCTTCTTTCTTCAC +
Preference number: 4 (lower is better)
Translates to: PRVNLHPRESSQSVSLEAPSCPC*AGFFLH
Trigger: GTGAAGAAAGAAGCCAGCCCAACAAGGACAGGATGG...AGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGTTGACCCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp TTTGGCTACCGTAGGGAGTGGATGGGAAGGGAAGAGACCCTAACTGACTGGCTTCGACTGAGTCTAGCTTaGAAACCTCCTCTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: FGYRREWMGREETLTDWLRLSLA*KPPLPG
Trigger: TCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCG...AAGCCAGTCAGTTAGGGTCTCTTCCCTTCCCATCCACTCCCTACGGTAGCCAAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp GAATGTGATCCTCAGACCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACGACTGAGTCTAGCTTaGAAACCTCCTCTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: ECDPQTHWVCSTVSEHHVRLSLA*KPPLPG
Trigger: TCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCG...TACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGGTCTGAGGATCACATTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGATGGCGATGGGCGTCTaGGGAGAAGTGAACCATCCT +
Preference number: 4 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQMAMGV*GEVNHP
Trigger: AGGATGGTTCACTTCTCCCCAGACGCCCATCGCCAT...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp CAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGACAGTTCCTAGAAGAAATCAATTCCTGCTGCAGTaGGTCCAGGCAACGGGGCAG +
Preference number: 4 (lower is better)
Translates to: QPTSYHGHFSGKTVPRRNQFLLQ*VQATGQ
Trigger: CTGCCCCGTTGCCTGGACCCACTGCAGCAGGAATTG...ATTTCTTCTAGGAACTGTCTTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
3UTR CAA 72 bp GTCTGCCTGCTGGCTGTTTTCAGGGAGCAGCTTTTCTaGTGTCCTCTTTCCGCTCGGTTATCTCTCAGAAGC +
Preference number: 4 (lower is better)
Translates to: VCLLAVFREQLF*CPLSARLSLRS
Trigger: GCTTCTGAGAGATAACCGAGCGGAAAGAGGACACAAGAAAAGCTGCTCCCTGAAAACAGCCAGCAGGCAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
CDS-3UTR TCA 90 bp AACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGGCTAAAAGAGAGCCGCGTCAGTGCTGCTaGGACTGCTGGTGTCACTTT +
Preference number: 4 (lower is better)
Translates to: NLHPRESSQSVSLEAKREPRQCC*DCWCHF
Trigger: AAAGTGACACCAGCAGTCTCAGCAGCACTGACGCGG...CTCTCTTTTAGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR TCA 90 bp GAATGTGATCCTCAGACCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTATTTGAAGGCGTTCCATaGAGGCGACTGAGTCTAGCT +
Preference number: 4 (lower is better)
Translates to: ECDPQTHWVCSTVSEHHVFEGVP*RRLSLA
Trigger: AGCTAGACTCAGTCGCCTTCATGGAACGCCTTCAAA...TACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGGTCTGAGGATCACATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR GCA 90 bp TCTCTAGGATCGGCTGGGCGTTCTCACCCACAATTCCTGCTGCAGTGGGTCCAGGGTCATCAGAGTCACTaGGGTCCTTTTTATTATTGC +
Preference number: 4 (lower is better)
Translates to: SLGSAGRSHPQFLLQWVQGHQSH*GPFYYC
Trigger: GCAATAATAAAAAGGACCGCAGTGACTCTGATGACC...CTGGACCCACTGCAGCAGGAATTGTGGGTGAGAACGCCCAGCCGATCCTAGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGGGAGATCCACGGCCATaGGCTTCACCTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKGDPRP*ASPSSS
Trigger: GGAGGAGGAAGGTGAAGCGCATGGCCGTGGATCTCC...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp TGTCCTAGCCCCAGGGCTAAACCAGTGGCCAGTAAATTGTTTCCTAAAAGGATTTTGCTGGAGACGTCCTaGGGGAGATCCACGGCCATG +
Preference number: 4 (lower is better)
Translates to: CPSPRAKPVASKLFPKRILLETS*GRSTAM
Trigger: CATGGCCGTGGATCTCCCGCAGGACGTCTCCAGCAA...AATCCTTTTAGGAAACAATTTACTGGCCACTGGTTTAGCCCTGGGGCTAGGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp CATCCTCTAGGGCAGGGTAAGGACACAGCAGCTGATTTCTCTGGAGACTGGAGCAAATGCATGCTTGTCTaGCTGCTGGCTGTTTTCAGG +
Preference number: 4 (lower is better)
Translates to: HPLGQGKDTAADFSGDWSKCMLV*LLAVFR
Trigger: CCTGAAAACAGCCAGCAGGCAGACAAGCATGCATTT...GCTCCAGTCTCCAGAGAAATCAGCTGCTGTGTCCTTACCCTGCCCTAGAGGATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR GCA 90 bp TTTGGCTACCGTAGGGAGTGGATGGGAAGGGAAGAGACCCTAACTGACTGGCTTAGGATCCTAAATGCATaGTTGTCTGCCTGCTGGCTG +
Preference number: 4 (lower is better)
Translates to: FGYRREWMGREETLTDWLRILNA*LSACWL
Trigger: CAGCCAGCAGGCAGACAAGCATGCATTTAGGATCCT...AAGCCAGTCAGTTAGGGTCTCTTCCCTTCCCATCCACTCCCTACGGTAGCCAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065573.14
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp AGAGGGAAGGAGCCACTTAAGATACTCTCAAACACAGGGTCGGGCAGGTTGGTGTTCGCCACTAACATCTaGTCATCAGAGTCACTGCGG +
Preference number: 4 (lower is better)
Translates to: RGKEPLKILSNTGSGRLVFATNI*SSESLR
Trigger: CCGCAGTGACTCTGATGACCAGATGTTAGTGGCGAA...CACCAACCTGCCCGACCCTGTGTTTGAGAGTATCTTAAGTGGCTCCTTCCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CCA 90 bp CCACTTAAGATACTCTCAAACACAGGGTCGGGCAGGTTGGTGTCCAGCTCTGCTCTTCCGGGTAAACTCTaGATACTGGCTGGCTCTATC +
Preference number: 4 (lower is better)
Translates to: PLKILSNTGSGRLVSSSALPGKL*ILAGSI
Trigger: GATAGAGCCAGCCAGTATCCAGAGTTTACCCGGAAG...AGCAGAGCTGGACACCAACCTGCCCGACCCTGTGTTTGAGAGTATCTTAAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CCA 90 bp AGAGGGAAGGAGCCACTTAAGATACTCTCAAACACAGGGTCGGGCAGGTTGGTGCTGTCCTTGTTGGGCTaGCTTCTTTCTTCACTCTCC +
Preference number: 4 (lower is better)
Translates to: RGKEPLKILSNTGSGRLVLSLLG*LLSSLS
Trigger: GGAGAGTGAAGAAAGAAGCCAGCCCAACAAGGACAG...CACCAACCTGCCCGACCCTGTGTTTGAGAGTATCTTAAGTGGCTCCTTCCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CCA 90 bp AGAGGGAAGGAGCCACTTAAGATACTCTCAAACACAGGGTCGGGCAGGTTGGTGCCATCCTGTCCTTGTTaGGCTGGCTTCTTTCTTCAC +
Preference number: 4 (lower is better)
Translates to: RGKEPLKILSNTGSGRLVPSCPC*AGFFLH
Trigger: GTGAAGAAAGAAGCCAGCCCAACAAGGACAGGATGG...CACCAACCTGCCCGACCCTGTGTTTGAGAGTATCTTAAGTGGCTCCTTCCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CCA 90 bp GAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTTAGGTGTCCAGCTCTGCTaGCTCATCCTTTTCCCACCA +
Preference number: 4 (lower is better)
Translates to: ECLVPLFLLYLVSGLGQLGVQLC*LILFPP
Trigger: TGGTGGGAAAAGGATGAGCCAGCAGAGCTGGACACC...TAACTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp GAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTTAATGGCGATGGGCGTCTaGGGAGAAGTGAACCATCCT +
Preference number: 4 (lower is better)
Translates to: ECLVPLFLLYLVSGLGQLMAMGV*GEVNHP
Trigger: AGGATGGTTCACTTCTCCCCAGACGCCCATCGCCAT...TAACTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR GCA 90 bp ATCTCCCCAGGGTCAACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGAGCTCTCTTCCAGTaGAGAGACAAGATCGTGAAC +
Preference number: 4 (lower is better)
Translates to: ISPGSTYIPGNPPSQFHLRALFQ*RDKIVN
Trigger: GTTCACGATCTTGTCTCTGCACTGGAAGAGAGCTCT...CAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGTTGACCCTGGGGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR GCA 90 bp GAATGTGATCCTCAGACCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTAAGAGCTCTCTTCCAGTaGAGAGACAAGATCGTGAAC +
Preference number: 4 (lower is better)
Translates to: ECDPQTHWVCSTVSEHHVRALFQ*RDKIVN
Trigger: GTTCACGATCTTGTCTCTGCACTGGAAGAGAGCTCT...TACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGGTCTGAGGATCACATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp CACACTTCAGTGTGTCCCTCCCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGGTCATCAGAGTCACTaGGGTCCTTTTTATTATTGC +
Preference number: 4 (lower is better)
Translates to: HTSVCPSREEDRSQVPSNGHQSH*GPFYYC
Trigger: GCAATAATAAAAAGGACCGCAGTGACTCTGATGACC...ATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGGGAGGGACACACTGAAGTGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp AGGGTCAACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGGCTAAAATCTCTGCAGCCTTCTaGCAGCTGGGTCATTGTCCT +
Preference number: 4 (lower is better)
Translates to: RVNLHPRESSQSVSLEAKISAAF*QLGHCP
Trigger: AGGACAATGACCCAGCTGCCAGAAGGCTGCAGAGAT...TTTAGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGTTGACCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp CAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGACAGTTCCTAGAAGAAATACTCCTCCTTCCTCCTaGGTTTTCGGTCCTGGCCTA +
Preference number: 4 (lower is better)
Translates to: QPTSYHGHFSGKTVPRRNTPPSS*VFGPGL
Trigger: TAGGCCAGGACCGAAAACCCAGGAGGAAGGAGGAGT...ATTTCTTCTAGGAACTGTCTTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
3UTR CAA 72 bp ACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTaGAGGCTAAAAGAGAGACCACCACCAATCCTGCAG +
Preference number: 4 (lower is better)
Translates to: TYIPGNPPSQFH*RLKERPPPILQ
Trigger: CTGCAGGATTGGTGGTGGTCTCTCTTTTAGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR TCA 90 bp GAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTTATTTGAAGGCGTTCCATaGAGGCGACTGAGTCTAGCT +
Preference number: 4 (lower is better)
Translates to: ECLVPLFLLYLVSGLGQLFEGVP*RRLSLA
Trigger: AGCTAGACTCAGTCGCCTTCATGGAACGCCTTCAAA...TAACTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR GCA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGGGGTCATTGTCCTTTTaGTGGAGACGTCCTGCGGGA +
Preference number: 4 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKGSLSF*WRRPAG
Trigger: TCCCGCAGGACGTCTCCAGCAAAAGGACAATGACCC...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGAAATGCATGCTTGTCTaGCTGCTGGCTGTTTTCAGG +
Preference number: 4 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQKCMLV*LLAVFR
Trigger: CCTGAAAACAGCCAGCAGGCAGACAAGCATGCATTT...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp TTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTCCTTCACTTAAGCAGTaGCCTGTCTCCCACGGGTGG +
Preference number: 4 (lower is better)
Translates to: FSIRMPGPSVPSVLGKWVPSLKQ*PVSHGW
Trigger: CCACCCGTGGGAGACAGGCCACTGCTTAAGTGAAGG...AACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp AGGGTCAACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGGCTAAATTCGCCACTAACATCTaGTCATCAGAGTCACTGCGG +
Preference number: 4 (lower is better)
Translates to: RVNLHPRESSQSVSLEAKFATNI*SSESLR
Trigger: CCGCAGTGACTCTGATGACCAGATGTTAGTGGCGAA...TTTAGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGTTGACCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp GAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTTATTCGCCACTAACATCTaGTCATCAGAGTCACTGCGG +
Preference number: 4 (lower is better)
Translates to: ECLVPLFLLYLVSGLGQLFATNI*SSESLR
Trigger: CCGCAGTGACTCTGATGACCAGATGTTAGTGGCGAA...TAACTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGACTCCTCCTTCCTCCTaGGTTTTCGGTCCTGGCCTA +
Preference number: 4 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKTPPSS*VFGPGL
Trigger: TAGGCCAGGACCGAAAACCCAGGAGGAAGGAGGAGT...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp AGGGTCAACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGGCTAAACTGTCCTTGTTGGGCTaGCTTCTTTCTTCACTCTCC +
Preference number: 4 (lower is better)
Translates to: RVNLHPRESSQSVSLEAKLSLLG*LLSSLS
Trigger: GGAGAGTGAAGAAAGAAGCCAGCCCAACAAGGACAG...TTTAGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGTTGACCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp TTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTCCTCCTCTGCCAGGATaGGACATGAGAGGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: FSIRMPGPSVPSVLGKWVPPLPG*DMRGKE
Trigger: CTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGG...AACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp ACGTCACATCTTGCTGCTCTTTATAAGGACTTGAATGCTGAAGGGTACCTGTGGATGGCGATGGGCGTCTaGGGAGAAGTGAACCATCCT +
Preference number: 4 (lower is better)
Translates to: TSHLAALYKDLNAEGYLWMAMGV*GEVNHP
Trigger: AGGATGGTTCACTTCTCCCCAGACGCCCATCGCCAT...CCACAGGTACCCTTCAGCATTCAAGTCCTTATAAAGAGCAGCAAGATGTGACGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR TCA 90 bp AAGTCCCCTCCTAGGGCTTTACAAGACCATCAAGAAATGAAACTCAAAGAAGAGCCGCGTCAGTGCTGCTaGGACTGCTGGTGTCACTTT +
Preference number: 4 (lower is better)
Translates to: KSPPRALQDHQEMKLKEEPRQCC*DCWCHF
Trigger: AAAGTGACACCAGCAGTCTCAGCAGCACTGACGCGG...CTCTTCTTTGAGTTTCATTTCTTGATGGTCTTGTAAAGCCCTAGGAGGGGACTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR TCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTACCGCGTCAGTGCTGCTaGGACTGCTGGTGTCACTTT +
Preference number: 4 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVPRQCC*DCWCHF
Trigger: AAAGTGACACCAGCAGTCTCAGCAGCACTGACGCGG...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR TCA 90 bp CCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGTCATTCCCCAGGTGTTCAACTTTTTAATATTCTTTaGAGGCGTTCCATGAAGGCG +
Preference number: 4 (lower is better)
Translates to: PGRGQEPGSFECHSPGVQLFNIL*RRSMKA
Trigger: CGCCTTCATGGAACGCCTTCAAAGAATATTAAAAAG...TTGAACACCTGGGGAATGACATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR GCA 90 bp AGCCACTTAAGATACTCTCAAACACAGGGTCGGGCAGGTTGGTGTCCAGCTCTGGGTCATCAGAGTCACTaGGGTCCTTTTTATTATTGC +
Preference number: 4 (lower is better)
Translates to: SHLRYSQTQGRAGWCPALGHQSH*GPFYYC
Trigger: GCAATAATAAAAAGGACCGCAGTGACTCTGATGACC...CAGAGCTGGACACCAACCTGCCCGACCCTGTGTTTGAGAGTATCTTAAGTGGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR GCA 90 bp TTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTCCATCCTCTTGTTACTaGCAGGGCCAGGAGCAGACA +
Preference number: 4 (lower is better)
Translates to: FSIRMPGPSVPSVLGKWVPSSCY*QGQEQT
Trigger: TGTCTGCTCCTGGCCCTGGCAGTAACAAGAGGATGG...AACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR GCA 90 bp TTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTGCATGCTTGTCTGCCTaGTGGCTGTTTTCAGGGAGC +
Preference number: 4 (lower is better)
Translates to: FSIRMPGPSVPSVLGKWVACLSA*WLFSGS
Trigger: GCTCCCTGAAAACAGCCAGCAGGCAGACAAGCATGC...AACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR GCA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGCACAAGGATCCTAAATaGATGCTTGTCTGCTCATGG +
Preference number: 4 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQHKDPK*MLVCSW
Trigger: CCATGAGCAGACAAGCATGCATTTAGGATCCTTGTG...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110943.9
CDS-3UTR CCA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGATCTCTGCAGCCTTCTaGCAGCTGGGTCATTGTCCT +
Preference number: 4 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKISAAF*QLGHCP
Trigger: AGGACAATGACCCAGCTGCCAGAAGGCTGCAGAGAT...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp ACGTCACATCTTGCTGCTCTTTATAAGGACTTGAATGCTGAAGGGTACCTGTGGATCTCTGCAGCCTTCTaGCAGCTGGGTCATTGTCCT +
Preference number: 4 (lower is better)
Translates to: TSHLAALYKDLNAEGYLWISAAF*QLGHCP
Trigger: AGGACAATGACCCAGCTGCCAGAAGGCTGCAGAGAT...CCACAGGTACCCTTCAGCATTCAAGTCCTTATAAAGAGCAGCAAGATGTGACGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CCA 90 bp CAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGACAGTTCCTAGAAGAAATCCATCCTGTCCTTGTTaGGCTGGCTTCTTTCTTCAC +
Preference number: 4 (lower is better)
Translates to: QPTSYHGHFSGKTVPRRNPSCPC*AGFFLH
Trigger: GTGAAGAAAGAAGCCAGCCCAACAAGGACAGGATGG...ATTTCTTCTAGGAACTGTCTTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGCAGGGTCGGGCAGGTTaGTGTCCAGCTCTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: LNKEQLRISDLMERTTEWQGRAG*CPALLA
Trigger: AGCCAGCAGAGCTGGACACCAACCTGCCCGACCCTG...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp GAAATGAAACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTGAGTCCAGTCAGGGTCGGGCAGGTTaGTGTCCAGCTCTGCTGGCT +
Preference number: 4 (lower is better)
Translates to: EMKLKEEQTSLEKTLESSQGRAG*CPALLA
Trigger: AGCCAGCAGAGCTGGACACCAACCTGCCCGACCCTG...ACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGTTTCATTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CCA 90 bp GGAGCCAGGTTCCTTCGAATGTCATTCCCCAGGTGTTCAAATGTAACTAATTTACCTCCTCTGCCAGGATaGGACATGAGAGGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: GARFLRMSFPRCSNVTNLPPLPG*DMRGKE
Trigger: CTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGG...TAAATTAGTTACATTTGAACACCTGGGGAATGACATTCGAAGGAACCTGGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp CCTCCTAGGGCTTTACAAGACCATCAAGAAATGAAACTCAAAGAAGAGCAAACACAATTCCTGCTGCAGTaGGTCCAGGCAACGGGGCAG +
Preference number: 4 (lower is better)
Translates to: PPRALQDHQEMKLKEEQTQFLLQ*VQATGQ
Trigger: CTGCCCCGTTGCCTGGACCCACTGCAGCAGGAATTG...TGTTTGCTCTTCTTTGAGTTTCATTTCTTGATGGTCTTGTAAAGCCCTAGGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR TCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGCCGCGTCAGTGCTGCTaGGACTGCTGGTGTCACTTT +
Preference number: 4 (lower is better)
Translates to: RISDLMERTTEWNGRNIVPRQCC*DCWCHF
Trigger: AAAGTGACACCAGCAGTCTCAGCAGCACTGACGCGG...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGTTGCTGGAGACGTCCTaGGGGAGATCCACGGCCATG +
Preference number: 4 (lower is better)
Translates to: LNKEQLRISDLMERTTEWLLETS*GRSTAM
Trigger: CATGGCCGTGGATCTCCCGCAGGACGTCTCCAGCAA...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTACCATCCTCTTGTTACTaGCAGGGCCAGGAGCAGACA +
Preference number: 4 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVPSSCY*QGQEQT
Trigger: TGTCTGCTCCTGGCCCTGGCAGTAACAAGAGGATGG...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGCCTTCACTTAAGCAGTaGCCTGTCTCCCACGGGTGG +
Preference number: 4 (lower is better)
Translates to: RISDLMERTTEWNGRNIVPSLKQ*PVSHGW
Trigger: CCACCCGTGGGAGACAGGCCACTGCTTAAGTGAAGG...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp AGAAAGACAGCTATTAAAAATGGCAGTTTACTAGTCACGAGCTTGTTCCAGCAGCCTTCACTTAAGCAGTaGCCTGTCTCCCACGGGTGG +
Preference number: 4 (lower is better)
Translates to: RKTAIKNGSLLVTSLFQQPSLKQ*PVSHGW
Trigger: CCACCCGTGGGAGACAGGCCACTGCTTAAGTGAAGG...CTGCTGGAACAAGCTCGTGACTAGTAAACTGCCATTTTTAATAGCTGTCTTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CCA 90 bp ACGTCACATCTTGCTGCTCTTTATAAGGACTTGAATGCTGAAGGGTACCTGTGGCTGTCCTTGTTGGGCTaGCTTCTTTCTTCACTCTCC +
Preference number: 4 (lower is better)
Translates to: TSHLAALYKDLNAEGYLWLSLLG*LLSSLS
Trigger: GGAGAGTGAAGAAAGAAGCCAGCCCAACAAGGACAG...CCACAGGTACCCTTCAGCATTCAAGTCCTTATAAAGAGCAGCAAGATGTGACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CCA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGCTGTCCTTGTTGGGCTaGCTTCTTTCTTCACTCTCC +
Preference number: 4 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKLSLLG*LLSSLS
Trigger: GGAGAGTGAAGAAAGAAGCCAGCCCAACAAGGACAG...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp AAGTCCCCTCCTAGGGCTTTACAAGACCATCAAGAAATGAAACTCAAAGAAGAGGGTGTCCAGCTCTGCTaGCTCATCCTTTTCCCACCA +
Preference number: 4 (lower is better)
Translates to: KSPPRALQDHQEMKLKEEGVQLC*LILFPP
Trigger: TGGTGGGAAAAGGATGAGCCAGCAGAGCTGGACACC...CTCTTCTTTGAGTTTCATTTCTTGATGGTCTTGTAAAGCCCTAGGAGGGGACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAGGTGTCCAGCTCTGCTaGCTCATCCTTTTCCCACCA +
Preference number: 4 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVGVQLC*LILFPP
Trigger: TGGTGGGAAAAGGATGAGCCAGCAGAGCTGGACACC...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGCCTCCTCTGCCAGGATaGGACATGAGAGGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: RISDLMERTTEWNGRNIVPPLPG*DMRGKE
Trigger: CTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGG...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR TCA 90 bp GGAGCCAGGTTCCTTCGAATGTCATTCCCCAGGTGTTCAAATGTAACTAATTTACTTCCATTGTTCGACTaGAATGCCAGCTCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: GARFLRMSFPRCSNVTNLLPLFD*NASSSR
Trigger: CCGGGAAGAGCTGGCATTTCAGTCGAACAATGGAAG...TAAATTAGTTACATTTGAACACCTGGGGAATGACATTCGAAGGAACCTGGCTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR GCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAATCCACCTCGGGCTTaGTCAGAGCTCTCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVNPPRA*SELSSS
Trigger: ACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATT...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAGGAGATCCACGGCCATaGGCTTCACCTTCCTCCTCC +
Preference number: 4 (lower is better)
Translates to: KEQLRISDLMERTTEWNGGDPRP*ASPSSS
Trigger: GGAGGAGGAAGGTGAAGCGCATGGCCGTGGATCTCC...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp AGAAAGACAGCTATTAAAAATGGCAGTTTACTAGTCACGAGCTTGTTCCAGCAGGGGTCATTGTCCTTTTaGTGGAGACGTCCTGCGGGA +
Preference number: 4 (lower is better)
Translates to: RKTAIKNGSLLVTSLFQQGSLSF*WRRPAG
Trigger: TCCCGCAGGACGTCTCCAGCAAAAGGACAATGACCC...CTGCTGGAACAAGCTCGTGACTAGTAAACTGCCATTTTTAATAGCTGTCTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR GCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGGGGTCATTGTCCTTTTaGTGGAGACGTCCTGCGGGA +
Preference number: 4 (lower is better)
Translates to: RISDLMERTTEWNGRNIVGSLSF*WRRPAG
Trigger: TCCCGCAGGACGTCTCCAGCAAAAGGACAATGACCC...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp ACGTCACATCTTGCTGCTCTTTATAAGGACTTGAATGCTGAAGGGTACCTGTGGAAATGCATGCTTGTCTaGCTGCTGGCTGTTTTCAGG +
Preference number: 4 (lower is better)
Translates to: TSHLAALYKDLNAEGYLWKCMLV*LLAVFR
Trigger: CCTGAAAACAGCCAGCAGGCAGACAAGCATGCATTT...CCACAGGTACCCTTCAGCATTCAAGTCCTTATAAAGAGCAGCAAGATGTGACGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGCCTTCACTTAAGCAGTaGCCTGTCTCCCACGGGTGG +
Preference number: 4 (lower is better)
Translates to: LNKEQLRISDLMERTTEWPSLKQ*PVSHGW
Trigger: CCACCCGTGGGAGACAGGCCACTGCTTAAGTGAAGG...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGACTCCTCCTTCCTCCTaGGTTTTCGGTCCTGGCCTA +
Preference number: 4 (lower is better)
Translates to: RISDLMERTTEWNGRNIVTPPSS*VFGPGL
Trigger: TAGGCCAGGACCGAAAACCCAGGAGGAAGGAGGAGT...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGCCTCCTCTGCCAGGATaGGACATGAGAGGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: LNKEQLRISDLMERTTEWPPLPG*DMRGKE
Trigger: CTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGG...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp CTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATACCTCCTCTGCCAGGATaGGACATGAGAGGGAAGGAG +
Preference number: 4 (lower is better)
Translates to: LRISDLMERTTEWNGRNIPPLPG*DMRGKE
Trigger: CTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGG...TATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTACGACTGAGTCTAGCTTaGAAACCTCCTCTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVRLSLA*KPPLPG
Trigger: TCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCG...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGATGGCGATGGGCGTCTaGGGAGAAGTGAACCATCCT +
Preference number: 4 (lower is better)
Translates to: RISDLMERTTEWNGRNIVMAMGV*GEVNHP
Trigger: AGGATGGTTCACTTCTCCCCAGACGCCCATCGCCAT...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR TCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGCTTCCATTGTTCGACTaGAATGCCAGCTCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: RISDLMERTTEWNGRNIVLPLFD*NASSSR
Trigger: CCGGGAAGAGCTGGCATTTCAGTCGAACAATGGAAG...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160481.8
CDS-3UTR TCA 90 bp AGAAAGACAGCTATTAAAAATGGCAGTTTACTAGTCACGAGCTTGTTCCAGCAGCTTCCATTGTTCGACTaGAATGCCAGCTCTTCCCGG +
Preference number: 4 (lower is better)
Translates to: RKTAIKNGSLLVTSLFQQLPLFD*NASSSR
Trigger: CCGGGAAGAGCTGGCATTTCAGTCGAACAATGGAAG...CTGCTGGAACAAGCTCGTGACTAGTAAACTGCCATTTTTAATAGCTGTCTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
CDS-3UTR GCA 90 bp CCTCCTAGGGCTTTACAAGACCATCAAGAAATGAAACTCAAAGAAGAGCAAACAGTTGGTGTCCAGCTCTaGTGGCTCATCCTTTTCCCA +
Preference number: 4 (lower is better)
Translates to: PPRALQDHQEMKLKEEQTVGVQL*WLILFP
Trigger: TGGGAAAAGGATGAGCCAGCAGAGCTGGACACCAAC...TGTTTGCTCTTCTTTGAGTTTCATTTCTTGATGGTCTTGTAAAGCCCTAGGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR GCA 90 bp ATAAGAGACCAACTATTCTTCATGTCTAGAAACTGCTGGAAACCGAGGAAACACGTTGGTGTCCAGCTCTaGTGGCTCATCCTTTTCCCA +
Preference number: 4 (lower is better)
Translates to: IRDQLFFMSRNCWKPRKHVGVQL*WLILFP
Trigger: TGGGAAAAGGATGAGCCAGCAGAGCTGGACACCAAC...GTGTTTCCTCGGTTTCCAGCAGTTTCTAGACATGAAGAATAGTTGGTCTCTTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGACTCCTTTTCCGGGCCTaGCGTTTCAGAGGGCAAGAC +
Preference number: 4 (lower is better)
Translates to: KEQLRISDLMERTTEWNGLLFRA*RFRGQD
Trigger: GTCTTGCCCTCTGAAACGCCAGGCCCGGAAAAGGAG...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp GGAGCCAGGTTCCTTCGAATGTCATTCCCCAGGTGTTCAAATGTAACTAATTTACTTCCGGGTAAACTCTaGATACTGGCTGGCTCTATC +
Preference number: 4 (lower is better)
Translates to: GARFLRMSFPRCSNVTNLLPGKL*ILAGSI
Trigger: GATAGAGCCAGCCAGTATCCAGAGTTTACCCGGAAG...TAAATTAGTTACATTTGAACACCTGGGGAATGACATTCGAAGGAACCTGGCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTACTGTCCTTGTTGGGCTaGCTTCTTTCTTCACTCTCC +
Preference number: 4 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVLSLLG*LLSSLS
Trigger: GGAGAGTGAAGAAAGAAGCCAGCCCAACAAGGACAG...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTACCATCCTGTCCTTGTTaGGCTGGCTTCTTTCTTCAC +
Preference number: 4 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVPSCPC*AGFFLH
Trigger: GTGAAGAAAGAAGCCAGCCCAACAAGGACAGGATGG...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR TCA 90 bp ATAAGAGACCAACTATTCTTCATGTCTAGAAACTGCTGGAAACCGAGGAAACACTTTGAAGGCGTTCCATaGAGGCGACTGAGTCTAGCT +
Preference number: 4 (lower is better)
Translates to: IRDQLFFMSRNCWKPRKHFEGVP*RRLSLA
Trigger: AGCTAGACTCAGTCGCCTTCATGGAACGCCTTCAAA...GTGTTTCCTCGGTTTCCAGCAGTTTCTAGACATGAAGAATAGTTGGTCTCTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR GCA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGAGCTCTCTTCCAGTaGAGAGACAAGATCGTGAAC +
Preference number: 4 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVRALFQ*RDKIVN
Trigger: GTTCACGATCTTGTCTCTGCACTGGAAGAGAGCTCT...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATCCACCTCGGGCTTaGTCAGAGCTCTCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: LNKEQLRISDLMERTTEWNPPRA*SELSSS
Trigger: ACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATT...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp CTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTTGGTGTCCAGCTCTaGTGGCTCATCCTTTTCCCA +
Preference number: 4 (lower is better)
Translates to: LRISDLMERTTEWNGRNIVGVQL*WLILFP
Trigger: TGGGAAAAGGATGAGCCAGCAGAGCTGGACACCAAC...TATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR GCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGACCATCCTCTTGTTACTaGCAGGGCCAGGAGCAGACA +
Preference number: 4 (lower is better)
Translates to: KEQLRISDLMERTTEWNGPSSCY*QGQEQT
Trigger: TGTCTGCTCCTGGCCCTGGCAGTAACAAGAGGATGG...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp ATAAGAGACCAACTATTCTTCATGTCTAGAAACTGCTGGAAACCGAGGAAACACTTCGCCACTAACATCTaGTCATCAGAGTCACTGCGG +
Preference number: 4 (lower is better)
Translates to: IRDQLFFMSRNCWKPRKHFATNI*SSESLR
Trigger: CCGCAGTGACTCTGATGACCAGATGTTAGTGGCGAA...GTGTTTCCTCGGTTTCCAGCAGTTTCTAGACATGAAGAATAGTTGGTCTCTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp CTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAATCTCTGCAGCCTTCTaGCAGCTGGGTCATTGTCCT +
Preference number: 4 (lower is better)
Translates to: LRISDLMERTTEWNGRNIISAAF*QLGHCP
Trigger: AGGACAATGACCCAGCTGCCAGAAGGCTGCAGAGAT...TATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp CTGAACAAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGCGACTGAGTCTAGCTTaGAAACCTCCTCTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: LNKEQLRISDLMERTTEWRLSLA*KPPLPG
Trigger: TCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCG...CCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTTGTTCAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR TCA 90 bp CTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATATTTGAAGGCGTTCCATaGAGGCGACTGAGTCTAGCT +
Preference number: 4 (lower is better)
Translates to: LRISDLMERTTEWNGRNIFEGVP*RRLSLA
Trigger: AGCTAGACTCAGTCGCCTTCATGGAACGCCTTCAAA...TATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR TCA 90 bp ACGTCACATCTTGCTGCTCTTTATAAGGACTTGAATGCTGAAGGGTACCTGTGGCTTTTTAATATTCTTTaGAGGCGTTCCATGAAGGCG +
Preference number: 4 (lower is better)
Translates to: TSHLAALYKDLNAEGYLWLFNIL*RRSMKA
Trigger: CGCCTTCATGGAACGCCTTCAAAGAATATTAAAAAG...CCACAGGTACCCTTCAGCATTCAAGTCCTTATAAAGAGCAGCAAGATGTGACGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR GCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAATCCACCTCGGGCTTaGTCAGAGCTCTCTTCCAGT +
Preference number: 4 (lower is better)
Translates to: KEQLRISDLMERTTEWNGNPPRA*SELSSS
Trigger: ACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATT...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CCA 90 bp GAAATGAAACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTGAGTCCAGTCTTCCGGGTAAACTCTaGATACTGGCTGGCTCTATC +
Preference number: 4 (lower is better)
Translates to: EMKLKEEQTSLEKTLESSLPGKL*ILAGSI
Trigger: GATAGAGCCAGCCAGTATCCAGAGTTTACCCGGAAG...ACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGTTTCATTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGACGACTGAGTCTAGCTTaGAAACCTCCTCTGCCAGGA +
Preference number: 4 (lower is better)
Translates to: KEQLRISDLMERTTEWNGRLSLA*KPPLPG
Trigger: TCCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCG...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR CCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGATTCGCCACTAACATCTaGTCATCAGAGTCACTGCGG +
Preference number: 4 (lower is better)
Translates to: KEQLRISDLMERTTEWNGFATNI*SSESLR
Trigger: CCGCAGTGACTCTGATGACCAGATGTTAGTGGCGAA...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR TCA 90 bp AAGTCCCCTCCTAGGGCTTTACAAGACCATCAAGAAATGAAACTCAAAGAAGAGCTTTTTAATATTCTTTaGAGGCGTTCCATGAAGGCG +
Preference number: 4 (lower is better)
Translates to: KSPPRALQDHQEMKLKEELFNIL*RRSMKA
Trigger: CGCCTTCATGGAACGCCTTCAAAGAATATTAAAAAG...CTCTTCTTTGAGTTTCATTTCTTGATGGTCTTGTAAAGCCCTAGGAGGGGACTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR GCA 90 bp AGAAAGACAGCTATTAAAAATGGCAGTTTACTAGTCACGAGCTTGTTCCAGCAGGGTCATCAGAGTCACTaGGGTCCTTTTTATTATTGC +
Preference number: 4 (lower is better)
Translates to: RKTAIKNGSLLVTSLFQQGHQSH*GPFYYC
Trigger: GCAATAATAAAAAGGACCGCAGTGACTCTGATGACC...CTGCTGGAACAAGCTCGTGACTAGTAAACTGCCATTTTTAATAGCTGTCTTTCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR TCA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGCTTTTTAATATTCTTTaGAGGCGTTCCATGAAGGCG +
Preference number: 4 (lower is better)
Translates to: RISDLMERTTEWNGRNIVLFNIL*RRSMKA
Trigger: CGCCTTCATGGAACGCCTTCAAAGAATATTAAAAAG...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR TCA 90 bp CCTCCTAGGGCTTTACAAGACCATCAAGAAATGAAACTCAAAGAAGAGCAAACACTTTTTAATATTCTTTaGAGGCGTTCCATGAAGGCG +
Preference number: 4 (lower is better)
Translates to: PPRALQDHQEMKLKEEQTLFNIL*RRSMKA
Trigger: CGCCTTCATGGAACGCCTTCAAAGAATATTAAAAAG...TGTTTGCTCTTCTTTGAGTTTCATTTCTTGATGGTCTTGTAAAGCCCTAGGAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR GCA 90 bp AAAGAACAACTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAGGTCATCAGAGTCACTaGGGTCCTTTTTATTATTGC +
Preference number: 4 (lower is better)
Translates to: KEQLRISDLMERTTEWNGGHQSH*GPFYYC
Trigger: GCAATAATAAAAAGGACCGCAGTGACTCTGATGACC...TCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAGTTGTTCTTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
3UTR CAA 72 bp GTACTTGGTAAGTGGGTTAGGCCAGTTAGCTCAGTTTaGGGAAAAGCTATTTATATCTTCAAACAAACTGAC +
Preference number: 4 (lower is better)
Translates to: VLGKWVRPVSSV*GKAIYIFKQTD
Trigger: GTCAGTTTGTTTGAAGATATAAATAGCTTTTCCCAAAACTGAGCTAACTGGCCTAACCCACTTACCAAGTAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
3UTR CAA 72 bp CAAAAGTACTTCAACGATTACTCGCTTACAAAACAGTaGCTCCAAATGAAATTCACGGAATACCAATTGGAA +
Preference number: 4 (lower is better)
Translates to: QKYFNDYSLTKQ*LQMKFTEYQLE
Trigger: TTCCAATTGGTATTCCGTGAATTTCATTTGGAGCAACTGTTTTGTAAGCGAGTAATCGTTGAAGTACTTTTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110943.9
CDS-3UTR CAA 90 bp GAACTGGCTCCGCGATCCCTCTGCCATCTCGCCCGAGGCCTGACCCGGGTGTCCTGTCTTCCCTCATCGTaGGTGAACAAGCCCGCGTCA +
Preference number: 5 (lower is better)
Translates to: ELAPRSLCHLARGLTRVSCLPSS*VNKPAS
Trigger: TGACGCGGGCTTGTTCACCAACGATGAGGGAAGACA...GGACACCCGGGTCAGGCCTCGGGCGAGATGGCAGAGGGATCGCGGAGCCAGTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp CCTTTTCCCACCAGGGCACGACTCCAGCAATCCCGCACGCTCCGCCTGACTCCTAAATCCACCTCGGGCTaGCTCAGAGCTCTCTTCCAG +
Preference number: 5 (lower is better)
Translates to: PFPTRARLQQSRTLRLTPKSTSG*LRALFQ
Trigger: CTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATTT...AGGAGTCAGGCGGAGCGTGCGGGATTGCTGGAGTCGTGCCCTGGTGGGAAAAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CAA 90 bp CGGGGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGCAGGAGCAGACAGCATaGAAGGTGGAGCCCCTGAAG +
Preference number: 5 (lower is better)
Translates to: RGPLVSWPAHFLPRPLLRQEQTA*KVEPLK
Trigger: CTTCAGGGGCTCCACCTTCAATGCTGTCTGCTCCTG...CCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS CCA 90 bp TGTCCTAGCCCCAGGGCTAAACCAGTGGTCATGGCGATGGGCGTCTaGGGAGAAGTGAACCATCCTCTTGTTACTGCCAGGGCCAGGAGC +
Preference number: 5 (lower is better)
Translates to: CPSPRAKPVVMAMGV*GEVNHPLVTARARS
Trigger: GCTCCTGGCCCTGGCAGTAACAAGAGGATGGTTCACTTCTCCCCAGACGCCCATCGCCATGACCACTGGTTTAGCCCTGGGGCTAGGACA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCTGGGTCATTGTCCTTTaGCTGGAGACGTCCTGCGGG +
Preference number: 5 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSWVIVL*LETSCG
Trigger: CCCGCAGGACGTCTCCAGCAAAAGGACAATGACCCA...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp CGGGGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGTGTCTTCCCTCATCGTaGGTGAACAAGCCCGCGTCA +
Preference number: 5 (lower is better)
Translates to: RGPLVSWPAHFLPRPLLRCLPSS*VNKPAS
Trigger: TGACGCGGGCTTGTTCACCAACGATGAGGGAAGACA...CCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS TCA 90 bp CCAGTGCAGAGACAAGATCGTGAACAAGCTCTTCCATTGTTCGACTaGAATGCCAGCTCTTCCCGGCGGCGGTTCCGATCGCTGGGCGCC +
Preference number: 5 (lower is better)
Translates to: PVQRQDREQALPLFD*NASSSRRRFRSLGA
Trigger: GGCGCCCAGCGATCGGAACCGCCGCCGGGAAGAGCTGGCATTTCAGTCGAACAATGGAAGAGCTTGTTCACGATCTTGTCTCTGCACTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160481.8
CDS GCA 90 bp CATGGCGATGGGCGTCTGGGGAGAAGTGAACCATCCTCTTGTTACTaGCAGGGCCAGGAGCAGACAGCATTGAAGGTGGAGCCCCTGAAG +
Preference number: 5 (lower is better)
Translates to: HGDGRLGRSEPSSCY*QGQEQTALKVEPLK
Trigger: CTTCAGGGGCTCCACCTTCAATGCTGTCTGCTCCTGGCCCTGGCAGTAACAAGAGGATGGTTCACTTCTCCCCAGACGCCCATCGCCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCAAATCCACCTCGGGCTaGCTCAGAGCTCTCTTCCAG +
Preference number: 5 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSKSTSG*LRALFQ
Trigger: CTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATTT...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp GTGTCCCTCCCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGTCATTCCCCATGGGTCATTGTCCTTTaGCTGGAGACGTCCTGCGGG +
Preference number: 5 (lower is better)
Translates to: VSLPGRGQEPGSFECHSPWVIVL*LETSCG
Trigger: CCCGCAGGACGTCTCCAGCAAAAGGACAATGACCCA...TGGGGAATGACATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGGGAGGGACAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CAA 90 bp GGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAAACGCTGCTGCTTAGGTTaGAAGATGGCCTCCGCTTCG +
Preference number: 5 (lower is better)
Translates to: GPLVSWPAHFLPRPLLRKRCCLG*KMASAS
Trigger: CGAAGCGGAGGCCATCTTCAAACCTAAGCAGCAGCG...TTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CAA 90 bp TCAAACACAGGGTCGGGCAGGTTGGTGTCCAGCTCTGCTGGCTCATCCTTTTCCCGCTGCTGCTTAGGTTaGAAGATGGCCTCCGCTTCG +
Preference number: 5 (lower is better)
Translates to: SNTGSGRLVSSSAGSSFSRCCLG*KMASAS
Trigger: CGAAGCGGAGGCCATCTTCAAACCTAAGCAGCAGCG...GGAAAAGGATGAGCCAGCAGAGCTGGACACCAACCTGCCCGACCCTGTGTTTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CAA 90 bp CAACAGAAACCGCAGGTTCTCTCTCTGCTCAGGCAGGGTTTCCTGATGTGGGGGTGGGTCATTGTCCTTTaGCTGGAGACGTCCTGCGGG +
Preference number: 5 (lower is better)
Translates to: QQKPQVLSLLRQGFLMWGWVIVL*LETSCG
Trigger: CCCGCAGGACGTCTCCAGCAAAAGGACAATGACCCA...CCCCCACATCAGGAAACCCTGCCTGAGCAGAGAGAGAACCTGCGGTTTCTGTTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp GGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGCGACTGAGTCTAGCTaGGAAACCTCCTCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: GPLVSWPAHFLPRPLLRKATESS*ETSSAR
Trigger: CCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCGC...TTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp CACTTCAGTGTGTCCCTCCCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGTAAATCCACCTCGGGCTaGCTCAGAGCTCTCTTCCAG +
Preference number: 5 (lower is better)
Translates to: HFSVSLPGRGQEPGSFECKSTSG*LRALFQ
Trigger: CTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATTT...ACATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGGGAGGGACACACTGAAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CAA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCCTGCTCATCATCACCTaGTCTTCCCTCATCGTTGGT +
Preference number: 5 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSLLIIT*SSLIVG
Trigger: ACCAACGATGAGGGAAGACAAGGTGATGATGAGCAG...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp CATCCTCTAGGGCAGGGTAAGGACACAGCAGCTGATTTCTCTGGAGACTGGAGCCAGGAGCAGACAGCATaGAAGGTGGAGCCCCTGAAG +
Preference number: 5 (lower is better)
Translates to: HPLGQGKDTAADFSGDWSQEQTA*KVEPLK
Trigger: CTTCAGGGGCTCCACCTTCAATGCTGTCTGCTCCTG...GCTCCAGTCTCCAGAGAAATCAGCTGCTGTGTCCTTACCCTGCCCTAGAGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp CCCACTGGGTGTGCTCCACTGTGTCTGAGCATCACGTACACGCACGGATGGAGCTGGTGGGGGAGCTTTTaGGTAGAGGAAATCCAAGTC +
Preference number: 5 (lower is better)
Translates to: PTGCAPLCLSITYTHGWSWWGSF*VEEIQV
Trigger: GACTTGGATTTCCTCTACCAAAAAGCTCCCCCACCA...GCTCCATCCGTGCGTGTACGTGATGCTCAGACACAGTGGAGCACACCCAGTGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp CATCCTCTAGGGCAGGGTAAGGACACAGCAGCTGATTTCTCTGGAGACTGGAGCAAATCCACCTCGGGCTaGCTCAGAGCTCTCTTCCAG +
Preference number: 5 (lower is better)
Translates to: HPLGQGKDTAADFSGDWSKSTSG*LRALFQ
Trigger: CTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATTT...GCTCCAGTCTCCAGAGAAATCAGCTGCTGTGTCCTTACCCTGCCCTAGAGGATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CAA 90 bp CATCCTCTAGGGCAGGGTAAGGACACAGCAGCTGATTTCTCTGGAGACTGGAGCCTGGCAGCTGGGTCATaGTCCTTTTGCTGGAGACGT +
Preference number: 5 (lower is better)
Translates to: HPLGQGKDTAADFSGDWSLAAGS*SFCWRR
Trigger: ACGTCTCCAGCAAAAGGACAATGACCCAGCTGCCAG...GCTCCAGTCTCCAGAGAAATCAGCTGCTGTGTCCTTACCCTGCCCTAGAGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CAA 90 bp TTCAGTGTGTCCCTCCCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGTCATTGTCTTCCCTCATCGTaGGTGAACAAGCCCGCGTCA +
Preference number: 5 (lower is better)
Translates to: FSVSLPGRGQEPGSFECHCLPSS*VNKPAS
Trigger: TGACGCGGGCTTGTTCACCAACGATGAGGGAAGACA...ATGACATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGGGAGGGACACACTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CAA 90 bp GCAGAACCTCTCAATCCTGTCTGTCCACCGCAAACTAACACGGCTGCAGTGCACTGTCTTCCCTCATCGTaGGTGAACAAGCCCGCGTCA +
Preference number: 5 (lower is better)
Translates to: AEPLNPVCPPQTNTAAVHCLPSS*VNKPAS
Trigger: TGACGCGGGCTTGTTCACCAACGATGAGGGAAGACA...GTGCACTGCAGCCGTGTTAGTTTGCGGTGGACAGACAGGATTGAGAGGTTCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
CDS-3UTR CAA 90 bp CTTCAGTGTGTCCCTCCCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGTCATACTCCATCCTGTCCTaGTTGGGCTGGCTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: LQCVPPGKRTGARFLRMSYSILS*LGWLLS
Trigger: AGAAAGAAGCCAGCCCAACAAGGACAGGATGGAGTA...TGACATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGGGAGGGACACACTGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CAA 90 bp GGTCCACTTGTGTCCTGGCCAGCCCACTTCTTACCACGGCCACTTCTCAGGAAATACTCCATCCTGTCCTaGTTGGGCTGGCTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: GPLVSWPAHFLPRPLLRKYSILS*LGWLLS
Trigger: AGAAAGAAGCCAGCCCAACAAGGACAGGATGGAGTA...TTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTGGCCAGGACACAAGTGGACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CAA 90 bp GAGGGAAGGAGCCACTTAAGATACTCTCAAACACAGGGTCGGGCAGGTTGGTGTTGTCTTCCCTCATCGTaGGTGAACAAGCCCGCGTCA +
Preference number: 5 (lower is better)
Translates to: EGRSHLRYSQTQGRAGWCCLPSS*VNKPAS
Trigger: TGACGCGGGCTTGTTCACCAACGATGAGGGAAGACA...ACACCAACCTGCCCGACCCTGTGTTTGAGAGTATCTTAAGTGGCTCCTTCCCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CAA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGGCGACTGAGTCTAGCTaGGAAACCTCCTCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQATESS*ETSSAR
Trigger: CCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCGC...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGCAGGAGCAGACAGCATaGAAGGTGGAGCCCCTGAAG +
Preference number: 5 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQQEQTA*KVEPLK
Trigger: CTTCAGGGGCTCCACCTTCAATGCTGTCTGCTCCTG...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS TCA 90 bp CCTCGGGCTTGCTCAGAGCTCTCTTCCAGTGCAGAGACAAGATCGTaGACAAGCTCTTCCATTGTTCGACTGAAATGCCAGCTCTTCCCG +
Preference number: 5 (lower is better)
Translates to: PRACSELSSSAETRS*TSSSIVRLKCQLFP
Trigger: CGGGAAGAGCTGGCATTTCAGTCGAACAATGGAAGAGCTTGTTCACGATCTTGTCTCTGCACTGGAAGAGAGCTCTGAGCAAGCCCGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp AGGGTCAACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGGCTAAACGCTGCTGCTTAGGTTaGAAGATGGCCTCCGCTTCG +
Preference number: 5 (lower is better)
Translates to: RVNLHPRESSQSVSLEAKRCCLG*KMASAS
Trigger: CGAAGCGGAGGCCATCTTCAAACCTAAGCAGCAGCG...TTTAGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGTTGACCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CAA 90 bp TGGAAACCTCCTCTGCCAGGATGGGACATGAGAGGGAAGGAGCCACTTAAGATACTGGCAGCTGGGTCATaGTCCTTTTGCTGGAGACGT +
Preference number: 5 (lower is better)
Translates to: WKPPLPGWDMRGKEPLKILAAGS*SFCWRR
Trigger: ACGTCTCCAGCAAAAGGACAATGACCCAGCTGCCAG...TATCTTAAGTGGCTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGGTTTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CAA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTGTCTTCCCTCATCGTaGGTGAACAAGCCCGCGTCA +
Preference number: 5 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQCLPSS*VNKPAS
Trigger: TGACGCGGGCTTGTTCACCAACGATGAGGGAAGACA...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp CCGGGAAGAGGACAGGAGCCAGGTTCCTTCGAATGTCATTCCCCAGGTGTTCAACTGCTCATCATCACCTaGTCTTCCCTCATCGTTGGT +
Preference number: 5 (lower is better)
Translates to: PGRGQEPGSFECHSPGVQLLIIT*SSLIVG
Trigger: ACCAACGATGAGGGAAGACAAGGTGATGATGAGCAG...TTGAACACCTGGGGAATGACATTCGAAGGAACCTGGCTCCTGTCCTCTTCCCGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS CCA 90 bp TCCGAGGCTTTCTGTTCCTCGTACTCCATCCTGTCCTTGTTGGGCTaGCTTCTTTCTTCACTCTCCAAAACTCCTCCTTCCTCCTGGGTT +
Preference number: 5 (lower is better)
Translates to: SEAFCSSYSILSLLG*LLSSLSKTPPSSWV
Trigger: AACCCAGGAGGAAGGAGGAGTTTTGGAGAGTGAAGAAAGAAGCCAGCCCAACAAGGACAGGATGGAGTACGAGGAACAGAAAGCCTCGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp GAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTTAAAATCCACCTCGGGCTaGCTCAGAGCTCTCTTCCAG +
Preference number: 5 (lower is better)
Translates to: ECLVPLFLLYLVSGLGQLKSTSG*LRALFQ
Trigger: CTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATTT...TAACTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp CAGCCCACTTCTTACCACGGCCACTTCTCAGGAAAGACAGTTCCTAGAAGAAATGCGACTGAGTCTAGCTaGGAAACCTCCTCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: QPTSYHGHFSGKTVPRRNATESS*ETSSAR
Trigger: CCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCGC...ATTTCTTCTAGGAACTGTCTTTCCTGAGAAGTGGCCGTGGTAAGAAGTGGGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGCGCTGCTGCTTAGGTTaGAAGATGGCCTCCGCTTCG +
Preference number: 5 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKRCCLG*KMASAS
Trigger: CGAAGCGGAGGCCATCTTCAAACCTAAGCAGCAGCG...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp AACCTACATCCCAGGGAATCCTCCCAGTCAGTTTCACTTGAGGCTAAAAGAGAGCTGGCAGCTGGGTCATaGTCCTTTTGCTGGAGACGT +
Preference number: 5 (lower is better)
Translates to: NLHPRESSQSVSLEAKRELAAGS*SFCWRR
Trigger: ACGTCTCCAGCAAAAGGACAATGACCCAGCTGCCAG...CTCTCTTTTAGCCTCAAGTGAAACTGACTGGGAGGATTCCCTGGGATGTAGGTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CAA 90 bp TGGAAACCTCCTCTGCCAGGATGGGACATGAGAGGGAAGGAGCCACTTAAGATATACTCCATCCTGTCCTaGTTGGGCTGGCTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: WKPPLPGWDMRGKEPLKIYSILS*LGWLLS
Trigger: AGAAAGAAGCCAGCCCAACAAGGACAGGATGGAGTA...TATCTTAAGTGGCTCCTTCCCTCTCATGTCCCATCCTGGCAGAGGAGGTTTCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CAA 90 bp TCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTACTCCATCCTGTCCTaGTTGGGCTGGCTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: SECLVPLFLLYLVSGLGQYSILS*LGWLLS
Trigger: AGAAAGAAGCCAGCCCAACAAGGACAGGATGGAGTA...CTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGGCGACTGAGTCTAGCTaGGAAACCTCCTCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKATESS*ETSSAR
Trigger: CCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCGC...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp TGTCCTAGCCCCAGGGCTAAACCAGTGGCCAGTAAATTGTTTCCTAAAAGGATTCAGGAGCAGACAGCATaGAAGGTGGAGCCCCTGAAG +
Preference number: 5 (lower is better)
Translates to: CPSPRAKPVASKLFPKRIQEQTA*KVEPLK
Trigger: CTTCAGGGGCTCCACCTTCAATGCTGTCTGCTCCTG...AATCCTTTTAGGAAACAATTTACTGGCCACTGGTTTAGCCCTGGGGCTAGGACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp ACGTCACATCTTGCTGCTCTTTATAAGGACTTGAATGCTGAAGGGTACCTGTGGCAGGAGCAGACAGCATaGAAGGTGGAGCCCCTGAAG +
Preference number: 5 (lower is better)
Translates to: TSHLAALYKDLNAEGYLWQEQTA*KVEPLK
Trigger: CTTCAGGGGCTCCACCTTCAATGCTGTCTGCTCCTG...CCACAGGTACCCTTCAGCATTCAAGTCCTTATAAAGAGCAGCAAGATGTGACGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp TTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTTGGGTCATTGTCCTTTaGCTGGAGACGTCCTGCGGG +
Preference number: 5 (lower is better)
Translates to: FSIRMPGPSVPSVLGKWVWVIVL*LETSCG
Trigger: CCCGCAGGACGTCTCCAGCAAAAGGACAATGACCCA...AACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGAGGGAGCAGCTTTTCTaGTGTCCTCTTTCCGCTCGG +
Preference number: 5 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKREQLF*CPLSAR
Trigger: CCGAGCGGAAAGAGGACACAAGAAAAGCTGCTCCCT...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS CCA 90 bp CTGCTGCTTAGGTTTGAAGATGGCCTCCGCTTCGCCACTAACATCTaGTCATCAGAGTCACTGCGGTCCTTTTTATTATTGCTGTGCTTC +
Preference number: 5 (lower is better)
Translates to: LLLRFEDGLRFATNI*SSESLRSFLLLLCF
Trigger: GAAGCACAGCAATAATAAAAAGGACCGCAGTGACTCTGATGACCAGATGTTAGTGGCGAAGCGGAGGCCATCTTCAAACCTAAGCAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp ACTAAGTGTTTAGTATCAGAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTATGGGTCATTGTCCTTTaGCTGGAGACGTCCTGCGGG +
Preference number: 5 (lower is better)
Translates to: TKCLVSECLVPLFLLYLVWVIVL*LETSCG
Trigger: CCCGCAGGACGTCTCCAGCAAAAGGACAATGACCCA...TACCAAGTACAGAAGGAACAGAGGGACCAGGCATTCTGATACTAAACACTTAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp CCTACCATTGAAGGTGGAGCCCCTGAAGACTTTTTAATATTCTTTGAAGGCGTTTGGGTCATTGTCCTTTaGCTGGAGACGTCCTGCGGG +
Preference number: 5 (lower is better)
Translates to: PTIEGGAPEDFLIFFEGVWVIVL*LETSCG
Trigger: CCCGCAGGACGTCTCCAGCAAAAGGACAATGACCCA...AACGCCTTCAAAGAATATTAAAAAGTCTTCAGGGGCTCCACCTTCAATGGTAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000159748.8
CDS-3UTR CAA 90 bp GGAGCCAGGTTCCTTCGAATGTCATTCCCCAGGTGTTCAAATGTAACTAATTTAGCGACTGAGTCTAGCTaGGAAACCTCCTCTGCCAGG +
Preference number: 5 (lower is better)
Translates to: GARFLRMSFPRCSNVTNLATESS*ETSSAR
Trigger: CCTGGCAGAGGAGGTTTCCAAGCTAGACTCAGTCGC...TAAATTAGTTACATTTGAACACCTGGGGAATGACATTCGAAGGAACCTGGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044812.12
CDS-3UTR CAA 90 bp GAATGCCTGGTCCCTCTGTTCCTTCTGTACTTGGTAAGTGGGTTAGGCCAGTTAATCCTAAATGCATGCTaGTCTGCCTGCTGGCTGTTT +
Preference number: 5 (lower is better)
Translates to: ECLVPLFLLYLVSGLGQLILNAC*SACWLF
Trigger: AAACAGCCAGCAGGCAGACAAGCATGCATTTAGGAT...TAACTGGCCTAACCCACTTACCAAGTACAGAAGGAACAGAGGGACCAGGCATTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGCGCTGCTGCTTAGGTTaGAAGATGGCCTCCGCTTCG +
Preference number: 5 (lower is better)
Translates to: RISDLMERTTEWNGRNIVRCCLG*KMASAS
Trigger: CGAAGCGGAGGCCATCTTCAAACCTAAGCAGCAGCG...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp ACGTCACATCTTGCTGCTCTTTATAAGGACTTGAATGCTGAAGGGTACCTGTGGCTGCTCATCATCACCTaGTCTTCCCTCATCGTTGGT +
Preference number: 5 (lower is better)
Translates to: TSHLAALYKDLNAEGYLWLLIIT*SSLIVG
Trigger: ACCAACGATGAGGGAAGACAAGGTGATGATGAGCAG...CCACAGGTACCCTTCAGCATTCAAGTCCTTATAAAGAGCAGCAAGATGTGACGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS GCA 90 bp AAGATGGCCTCCGCTTCGCCACTAACATCTGGTCATCAGAGTCACTaGGGTCCTTTTTATTATTGCTGTGCTTCTCTCTATAGTCCTTAC +
Preference number: 5 (lower is better)
Translates to: KMASASPLTSGHQSH*GPFYYCCASLYSPY
Trigger: GTAAGGACTATAGAGAGAAGCACAGCAATAATAAAAAGGACCGCAGTGACTCTGATGACCAGATGTTAGTGGCGAAGCGGAGGCCATCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp CTTAGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATACGCTGCTGCTTAGGTTaGAAGATGGCCTCCGCTTCG +
Preference number: 5 (lower is better)
Translates to: LRISDLMERTTEWNGRNIRCCLG*KMASAS
Trigger: CGAAGCGGAGGCCATCTTCAAACCTAAGCAGCAGCG...TATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCTAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp AGAAAGACAGCTATTAAAAATGGCAGTTTACTAGTCACGAGCTTGTTCCAGCAGCTGGCAGCTGGGTCATaGTCCTTTTGCTGGAGACGT +
Preference number: 5 (lower is better)
Translates to: RKTAIKNGSLLVTSLFQQLAAGS*SFCWRR
Trigger: ACGTCTCCAGCAAAAGGACAATGACCCAGCTGCCAG...CTGCTGGAACAAGCTCGTGACTAGTAAACTGCCATTTTTAATAGCTGTCTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CAA 90 bp ATAAGAGACCAACTATTCTTCATGTCTAGAAACTGCTGGAAACCGAGGAAACACCTGGCAGCTGGGTCATaGTCCTTTTGCTGGAGACGT +
Preference number: 5 (lower is better)
Translates to: IRDQLFFMSRNCWKPRKHLAAGS*SFCWRR
Trigger: ACGTCTCCAGCAAAAGGACAATGACCCAGCTGCCAG...GTGTTTCCTCGGTTTCCAGCAGTTTCTAGACATGAAGAATAGTTGGTCTCTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp ATAAGAGACCAACTATTCTTCATGTCTAGAAACTGCTGGAAACCGAGGAAACACAGGGAGCAGCTTTTCTaGTGTCCTCTTTCCGCTCGG +
Preference number: 5 (lower is better)
Translates to: IRDQLFFMSRNCWKPRKHREQLF*CPLSAR
Trigger: CCGAGCGGAAAGAGGACACAAGAAAAGCTGCTCCCT...GTGTTTCCTCGGTTTCCAGCAGTTTCTAGACATGAAGAATAGTTGGTCTCTTAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp AGTTACAAACCCTCATCAGAGCCAAAGCAAAGGGAAGTGAGCTCACTAAGCAAGATCCTAAATGCATGCTaGTCTGCCTGCTGGCTGTTT +
Preference number: 5 (lower is better)
Translates to: SYKPSSEPKQREVSSLSKILNAC*SACWLF
Trigger: AAACAGCCAGCAGGCAGACAAGCATGCATTTAGGAT...CTTGCTTAGTGAGCTCACTTCCCTTTGCTTTGGCTCTGATGAGGGTTTGTAACT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp GAAATGAAACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTGAGTCCAGTCTGGCAGCTGGGTCATaGTCCTTTTGCTGGAGACGT +
Preference number: 5 (lower is better)
Translates to: EMKLKEEQTSLEKTLESSLAAGS*SFCWRR
Trigger: ACGTCTCCAGCAAAAGGACAATGACCCAGCTGCCAG...ACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGTTTCATTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CAA 90 bp CCTCCTAGGGCTTTACAAGACCATCAAGAAATGAAACTCAAAGAAGAGCAAACATACTCCATCCTGTCCTaGTTGGGCTGGCTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: PPRALQDHQEMKLKEEQTYSILS*LGWLLS
Trigger: AGAAAGAAGCCAGCCCAACAAGGACAGGATGGAGTA...TGTTTGCTCTTCTTTGAGTTTCATTTCTTGATGGTCTTGTAAAGCCCTAGGAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CAA 90 bp ATAAGAGACCAACTATTCTTCATGTCTAGAAACTGCTGGAAACCGAGGAAACACCTGCTCATCATCACCTaGTCTTCCCTCATCGTTGGT +
Preference number: 5 (lower is better)
Translates to: IRDQLFFMSRNCWKPRKHLLIIT*SSLIVG
Trigger: ACCAACGATGAGGGAAGACAAGGTGATGATGAGCAG...GTGTTTCCTCGGTTTCCAGCAGTTTCTAGACATGAAGAATAGTTGGTCTCTTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS-3UTR CAA 90 bp AGAATTTCTGACCTTATGGAGAGAACGACAGAATGGAATGGAAGGAACATAGTGTGGTGGGGGAGCTTTTaGGTAGAGGAAATCCAAGTC +
Preference number: 5 (lower is better)
Translates to: RISDLMERTTEWNGRNIVWWGSF*VEEIQV
Trigger: GACTTGGATTTCCTCTACCAAAAAGCTCCCCCACCA...CACTATGTTCCTTCCATTCCATTCTGTCGTTCTCTCCATAAGGTCAGAAATTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp GAAATGAAACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTGAGTCCAGTTACTCCATCCTGTCCTaGTTGGGCTGGCTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: EMKLKEEQTSLEKTLESSYSILS*LGWLLS
Trigger: AGAAAGAAGCCAGCCCAACAAGGACAGGATGGAGTA...ACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGTTTCATTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
CDS-3UTR CAA 90 bp ATAAGAGACCAACTATTCTTCATGTCTAGAAACTGCTGGAAACCGAGGAAACACATCCTAAATGCATGCTaGTCTGCCTGCTGGCTGTTT +
Preference number: 5 (lower is better)
Translates to: IRDQLFFMSRNCWKPRKHILNAC*SACWLF
Trigger: AAACAGCCAGCAGGCAGACAAGCATGCATTTAGGAT...GTGTTTCCTCGGTTTCCAGCAGTTTCTAGACATGAAGAATAGTTGGTCTCTTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000065573.14
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS-3UTR CAA 90 bp GAAATGAAACTCAAAGAAGAGCAAACAAGTTTGGAAAAGACCCTTGAGTCCAGTTGGTGGGGGAGCTTTTaGGTAGAGGAAATCCAAGTC +
Preference number: 5 (lower is better)
Translates to: EMKLKEEQTSLEKTLESSWWGSF*VEEIQV
Trigger: GACTTGGATTTCCTCTACCAAAAAGCTCCCCCACCA...ACTGGACTCAAGGGTCTTTTCCAAACTTGTTTGCTCTTCTTTGAGTTTCATTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160570.2
CDS GCA 72 bp GGGCGTCTGGGGAGAAGTGAACCATCCTCTTGTTACTaGCAGGGCCAGGAGCAGACAGCATTGAAGGTGGAG +
Preference number: 6 (lower is better)
Translates to: GRLGRSEPSSCY*QGQEQTALKVE
Trigger: CTCCACCTTCAATGCTGTCTGCTCCTGGCCCTGGCAGTAACAAGAGGATGGTTCACTTCTCCCCAGACGCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
ENSMUST00000160570.2
CDS CAA 90 bp ACTCGTGCCACAGAAGCCGCTTACCTCGAACGCTGCTGCTTAGGTTaGAAGATGGCCTCCGCTTCGCCACTAACATCTGGTCATCAGAGT +
Preference number: 6 (lower is better)
Translates to: TRATEAAYLERCCLG*KMASASPLTSGHQS
Trigger: ACTCTGATGACCAGATGTTAGTGGCGAAGCGGAGGCCATCTTCAAACCTAAGCAGCAGCGTTCGAGGTAAGCGGCTTCTGTGGCACGAGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS TCA 72 bp AGACAAGATCGTGAACAAGCTCTTCCATTGTTCGACTaGAATGCCAGCTCTTCCCGGCGGCGGTTCCGATCG +
Preference number: 6 (lower is better)
Translates to: RQDREQALPLFD*NASSSRRRFRS
Trigger: CGATCGGAACCGCCGCCGGGAAGAGCTGGCATTTCAGTCGAACAATGGAAGAGCTTGTTCACGATCTTGTCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160481.8
CDS CAA 72 bp TCACTCTGCTCATCATCACCTTGTCTTCCCTCATCGTaGGTGAACAAGCCCGCGTCAGTGCTGCTGAGACTG +
Preference number: 6 (lower is better)
Translates to: SLCSSSPCLPSS*VNKPASVLLRL
Trigger: CAGTCTCAGCAGCACTGACGCGGGCTTGTTCACCAACGATGAGGGAAGACAAGGTGATGATGAGCAGAGTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS CAA 90 bp AGCTCATCCGAGGCTTTCTGTTCCTCGTACTCCATCCTGTCCTTGTaGGGCTGGCTTCTTTCTTCACTCTCCAAAACTCCTCCTTCCTCC +
Preference number: 6 (lower is better)
Translates to: SSSEAFCSSYSILSL*GWLLSSLSKTPPSS
Trigger: GGAGGAAGGAGGAGTTTTGGAGAGTGAAGAAAGAAGCCAGCCCAACAAGGACAGGATGGAGTACGAGGAACAGAAAGCCTCGGATGAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS CAA 90 bp CTGAGCTCATCCGAGGCTTTCTGTTCCTCGTACTCCATCCTGTCCTaGTTGGGCTGGCTTCTTTCTTCACTCTCCAAAACTCCTCCTTCC +
Preference number: 6 (lower is better)
Translates to: LSSSEAFCSSYSILS*LGWLLSSLSKTPPS
Trigger: GGAAGGAGGAGTTTTGGAGAGTGAAGAAAGAAGCCAGCCCAACAAGGACAGGATGGAGTACGAGGAACAGAAAGCCTCGGATGAGCTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS GCA 72 bp GAATGTTCTCCAGTTTCAGCAAATCCACCTCGGGCTTaGTCAGAGCTCTCTTCCAGTGCAGAGACAAGATCG +
Preference number: 6 (lower is better)
Translates to: ECSPVSANPPRA*SELSSSAETRS
Trigger: CGATCTTGTCTCTGCACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATTTGCTGAAACTGGAGAACATTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS GCA 72 bp AAATCCACCTCGGGCTTGCTCAGAGCTCTCTTCCAGTaGAGAGACAAGATCGTGAACAAGCTCTTCCATTGT +
Preference number: 6 (lower is better)
Translates to: KSTSGLLRALFQ*RDKIVNKLFHC
Trigger: ACAATGGAAGAGCTTGTTCACGATCTTGTCTCTGCACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160481.8
CDS CCA 72 bp TTCTGTTCCTCGTACTCCATCCTGTCCTTGTTGGGCTaGCTTCTTTCTTCACTCTCCAAAACTCCTCCTTCC +
Preference number: 6 (lower is better)
Translates to: FCSSYSILSLLG*LLSSLSKTPPS
Trigger: GGAAGGAGGAGTTTTGGAGAGTGAAGAAAGAAGCCAGCCCAACAAGGACAGGATGGAGTACGAGGAACAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS CCA 72 bp AGGCTTTCTGTTCCTCGTACTCCATCCTGTCCTTGTTaGGCTGGCTTCTTTCTTCACTCTCCAAAACTCCTC +
Preference number: 6 (lower is better)
Translates to: RLSVPRTPSCPC*AGFFLHSPKLL
Trigger: GAGGAGTTTTGGAGAGTGAAGAAAGAAGCCAGCCCAACAAGGACAGGATGGAGTACGAGGAACAGAAAGCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS CAA 72 bp AGAATGTTCTCCAGTTTCAGCAAATCCACCTCGGGCTaGCTCAGAGCTCTCTTCCAGTGCAGAGACAAGATC +
Preference number: 6 (lower is better)
Translates to: RMFSSFSKSTSG*LRALFQCRDKI
Trigger: GATCTTGTCTCTGCACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATTTGCTGAAACTGGAGAACATTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS CAA 90 bp CAGATTTCGAGAATGTTCTCCAGTTTCAGCAAATCCACCTCGGGCTaGCTCAGAGCTCTCTTCCAGTGCAGAGACAAGATCGTGAACAAG +
Preference number: 6 (lower is better)
Translates to: QISRMFSSFSKSTSG*LRALFQCRDKIVNK
Trigger: CTTGTTCACGATCTTGTCTCTGCACTGGAAGAGAGCTCTGAGCAAGCCCGAGGTGGATTTGCTGAAACTGGAGAACATTCTCGAAATCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS TCA 72 bp TGCTCAGAGCTCTCTTCCAGTGCAGAGACAAGATCGTaGACAAGCTCTTCCATTGTTCGACTGAAATGCCAG +
Preference number: 6 (lower is better)
Translates to: CSELSSSAETRS*TSSSIVRLKCQ
Trigger: CTGGCATTTCAGTCGAACAATGGAAGAGCTTGTTCACGATCTTGTCTCTGCACTGGAAGAGAGCTCTGAGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160481.8
CDS CCA 72 bp AGGTTTGAAGATGGCCTCCGCTTCGCCACTAACATCTaGTCATCAGAGTCACTGCGGTCCTTTTTATTATTG +
Preference number: 6 (lower is better)
Translates to: RFEDGLRFATNI*SSESLRSFLLL
Trigger: CAATAATAAAAAGGACCGCAGTGACTCTGATGACCAGATGTTAGTGGCGAAGCGGAGGCCATCTTCAAACCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS GCA 72 bp TCCGCTTCGCCACTAACATCTGGTCATCAGAGTCACTaGGGTCCTTTTTATTATTGCTGTGCTTCTCTCTAT +
Preference number: 6 (lower is better)
Translates to: SASPLTSGHQSH*GPFYYCCASLY
Trigger: ATAGAGAGAAGCACAGCAATAATAAAAAGGACCGCAGTGACTCTGATGACCAGATGTTAGTGGCGAAGCGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8
CDS GCA 72 bp TCTGGTCATCAGAGTCACTGCGGTCCTTTTTATTATTaGTGTGCTTCTCTCTATAGTCCTTACTTGGTTCTT +
Preference number: 6 (lower is better)
Translates to: SGHQSHCGPFYY*CASLYSPYLVL
Trigger: AAGAACCAAGTAAGGACTATAGAGAGAAGCACAGCAATAATAAAAAGGACCGCAGTGACTCTGATGACCAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000044812.12
ENSMUST00000065573.14
ENSMUST00000110943.9
ENSMUST00000159748.8
ENSMUST00000160471.8
ENSMUST00000160481.8