Pregenerated sensors for GPATCH11 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000050668Ensembl transcript IDs: ENSMUST00000170759.3
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ACACCCATGACTTTGAGGTCTGACCCTGGACATGACCCAGAAGTATaGAATCCTCTGACTCTTCATTCCTTCCTTTCCAACAGAGAAGTG | + |
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Preference number: 1 (lower is better) Translates to: TPMTLRSDPGHDPEV*NPLTLHSFLSNREV Trigger: CACTTCTCTGTTGGAAAGGAAGGAATGAAGAGTCAGAGGATTCCATACTTCTGGGTCATGTCCAGGGTCAGACCTCAAAGTCATGGGTGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR TCA 90 bp | TGCTGCCGCATACTCTTGGAGTTTAAAAAGTGGGTATTTAAGTACTaGCCAGTTCAGATGGGTCCACTAGAGGGGATCCTTGAGCATGCA | + |
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Preference number: 1 (lower is better) Translates to: CCRILLEFKKWVFKY*PVQMGPLEGILEHA Trigger: TGCATGCTCAAGGATCCCCTCTAGTGGACCCATCTGAACTGGTCAGTACTTAAATACCCACTTTTTAAACTCCAAGAGTATGCGGCAGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CCA 90 bp | TGCCATTTCTCCAAATTACTCTTAGGTAGTTTGGTTAGAAAGAGCTaGCCTTGTCCTGGATTCCAGCTTCACGCCAATGAGCTTAGCTTG | + |
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Preference number: 1 (lower is better) Translates to: CHFSKLLLGSLVRKS*PCPGFQLHANELSL Trigger: CAAGCTAAGCTCATTGGCGTGAAGCTGGAATCCAGGACAAGGCCAGCTCTTTCTAACCAAACTACCTAAGAGTAATTTGGAGAAATGGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CCA 90 bp | GATGGTGTGGTGTTTCAGAAAGCAACGCATGCTGCCGCATACTCTTaGAGTTTAAAAAGTGGGTATTTAAGTACTGACCAGTTCAGATGG | + |
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Preference number: 1 (lower is better) Translates to: DGVVFQKATHAAAYS*SLKSGYLSTDQFRW Trigger: CCATCTGAACTGGTCAGTACTTAAATACCCACTTTTTAAACTCCAAGAGTATGCGGCAGCATGCGTTGCTTTCTGAAACACCACACCATC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR TCA 90 bp | TCTGACTCTTCATTCCTTCCTTTCCAACAGAGAAGTGTTTTAATCTaGCAGACTACTCAGCCAGTGGTGTGCTCTTTACTCCAGAGAACT | + |
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Preference number: 1 (lower is better) Translates to: SDSSFLPFQQRSVLI*QTTQPVVCSLLQRT Trigger: AGTTCTCTGGAGTAAAGAGCACACCACTGGCTGAGTAGTCTGTCAGATTAAAACACTTCTCTGTTGGAAAGGAAGGAATGAAGAGTCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR CCA 90 bp | CGTAGTGTAGTGCCACTGGGATGTCGCCTGGTCACCCACAGCGTAGTGCAGTGCTCCCTTGTGATGGTGTaGTGTTTCAGAAAGCAACGC | + |
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Preference number: 2 (lower is better) Translates to: RSVVPLGCRLVTHSVVQCSLVMV*CFRKQR Trigger: GCGTTGCTTTCTGAAACACCACACCATCACAAGGGA...GCACTGCACTACGCTGTGGGTGACCAGGCGACATCCCAGTGGCACTACACTACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CAA 90 bp | AGCAGAGGCCGGGCGTGCCATTTCTCCAAATTACTCTTAGGTAGTTaGGTTAGAAAGAGCTGGCCTTGTCCTGGATTCCAGCTTCACGCC | + |
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Preference number: 2 (lower is better) Translates to: SRGRACHFSKLLLGS*VRKSWPCPGFQLHA Trigger: GGCGTGAAGCTGGAATCCAGGACAAGGCCAGCTCTTTCTAACCAAACTACCTAAGAGTAATTTGGAGAAATGGCACGCCCGGCCTCTGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR CCA 90 bp | TGCATGTCTGACTGTCAGCTTCTCCAAGTCTCCACCATCTGCAGACTCACTAGTCACAGGGATGTTGCCTaGTCACCCAGGGTAAGTTGG | + |
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Preference number: 2 (lower is better) Translates to: CMSDCQLLQVSTICRLTSHRDVA*SPRVSW Trigger: CCAACTTACCCTGGGTGACCAGGCAACATCCCTGTG...ACTAGTGAGTCTGCAGATGGTGGAGACTTGGAGAAGCTGACAGTCAGACATGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR TCA 90 bp | TGCATGTCTGACTGTCAGCTTCTCCAAGTCTCCACCATCTGCAGACTCACTAGTCTGTACAGATGGATGTaGGCCTTCATGTGGTTGTTG | + |
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Preference number: 2 (lower is better) Translates to: CMSDCQLLQVSTICRLTSLYRWM*AFMWLL Trigger: CAACAACCACATGAAGGCTCACATCCATCTGTACAG...ACTAGTGAGTCTGCAGATGGTGGAGACTTGGAGAAGCTGACAGTCAGACATGCA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR GCA 90 bp | GGGCAGAGTAGAGCCTCACTTACTCATGCCAGGGGCACTTTTGAAAGAAACTTTTGCAACTGTACGGGCTaGATGCCCATTAAGTGTACC | + |
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Preference number: 2 (lower is better) Translates to: GQSRASLTHARGTFERNFCNCTG*MPIKCT Trigger: GGTACACTTAATGGGCATGCAGCCCGTACAGTTGCA...AAAGTTTCTTTCAAAAGTGCCCCTGGCATGAGTAAGTGAGGCTCTACTCTGCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR CCA 90 bp | TACTTCAAGACACCAGTTCTAGAACACAAAGCAGACTCCACAGCAGAGGCCGGGGCTAAAGCAGACAACTaGCTTCTTCCTGATTCCGAT | + |
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Preference number: 2 (lower is better) Translates to: YFKTPVLEHKADSTAEAGAKADN*LLPDSD Trigger: ATCGGAATCAGGAAGAAGCCAGTTGTCTGCTTTAGC...CCCGGCCTCTGCTGTGGAGTCTGCTTTGTGTTCTAGAACTGGTGTCTTGAAGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR CCA 90 bp | TGCATGTCTGACTGTCAGCTTCTCCAAGTCTCCACCATCTGCAGACTCACTAGTGCTGCCGCATACTCTTaGAGTTTAAAAAGTGGGTAT | + |
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Preference number: 2 (lower is better) Translates to: CMSDCQLLQVSTICRLTSAAAYS*SLKSGY Trigger: ATACCCACTTTTTAAACTCCAAGAGTATGCGGCAGC...ACTAGTGAGTCTGCAGATGGTGGAGACTTGGAGAAGCTGACAGTCAGACATGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR TCA 90 bp | CACTGCCACATAGAAATGAAGATACGTAGGTATTTGGCCTACATTTTTCAAATTGCTTGTGCTGGCGGCTaGACTCAGGATCCTGTCCTG | + |
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Preference number: 2 (lower is better) Translates to: HCHIEMKIRRYLAYIFQIACAGG*TQDPVL Trigger: CAGGACAGGATCCTGAGTTCAGCCGCCAGCACAAGC...AATTTGAAAAATGTAGGCCAAATACCTACGTATCTTCATTTCTATGTGGCAGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR CCA 90 bp | GCAACGCATGCTGCCGCATACTCTTGGAGTTTAAAAAGTGGGTATTTAAGTACTTTGGTTAGAAAGAGCTaGCCTTGTCCTGGATTCCAG | + |
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Preference number: 2 (lower is better) Translates to: ATHAAAYSWSLKSGYLSTLVRKS*PCPGFQ Trigger: CTGGAATCCAGGACAAGGCCAGCTCTTTCTAACCAA...AGTACTTAAATACCCACTTTTTAAACTCCAAGAGTATGCGGCAGCATGCGTTGC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR CCA 90 bp | GGGCAGAGTAGAGCCTCACTTACTCATGCCAGGGGCACTTTTGAAAGAAACTTTATCCACGGTTACTTTTaGGTGACATGTCCTTTTACT | + |
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Preference number: 2 (lower is better) Translates to: GQSRASLTHARGTFERNFIHGYF*VTCPFT Trigger: AGTAAAAGGACATGTCACCCAAAAGTAACCGTGGAT...AAAGTTTCTTTCAAAAGTGCCCCTGGCATGAGTAAGTGAGGCTCTACTCTGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR CCA 90 bp | GGGCAGAGTAGAGCCTCACTTACTCATGCCAGGGGCACTTTTGAAAGAAACTTTATATACATGTATGGTTaGTTGCATAATGGTGGCACC | + |
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Preference number: 2 (lower is better) Translates to: GQSRASLTHARGTFERNFIYMYG*LHNGGT Trigger: GGTGCCACCATTATGCAACCAACCATACATGTATAT...AAAGTTTCTTTCAAAAGTGCCCCTGGCATGAGTAAGTGAGGCTCTACTCTGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR GCA 90 bp | CACTGCCACATAGAAATGAAGATACGTAGGTATTTGGCCTACATTTTTCAAATTTCGACCGGTCAACTCTaGTTGCTCAGGCCGAAAGAT | + |
|
Preference number: 2 (lower is better) Translates to: HCHIEMKIRRYLAYIFQISTGQL*LLRPKD Trigger: ATCTTTCGGCCTGAGCAAGCAGAGTTGACCGGTCGA...AATTTGAAAAATGTAGGCCAAATACCTACGTATCTTCATTTCTATGTGGCAGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR TCA 90 bp | CATGCTGCCGCATACTCTTGGAGTTTAAAAAGTGGGTATTTAAGTACTGACCAGAAGTATGGAATCCTCTaGCTCTTCATTCCTTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: HAAAYSWSLKSGYLSTDQKYGIL*LFIPSF Trigger: AAAGGAAGGAATGAAGAGTCAGAGGATTCCATACTT...CTGGTCAGTACTTAAATACCCACTTTTTAAACTCCAAGAGTATGCGGCAGCATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR TCA 90 bp | CACTGCCACATAGAAATGAAGATACGTAGGTATTTGGCCTACATTTTTCAAATTCCCCACTCACGTAAATaGTTTCCCTTTATTGGGAAC | + |
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Preference number: 2 (lower is better) Translates to: HCHIEMKIRRYLAYIFQIPHSRK*FPFIGN Trigger: GTTCCCAATAAAGGGAAATCATTTACGTGAGTGGGG...AATTTGAAAAATGTAGGCCAAATACCTACGTATCTTCATTTCTATGTGGCAGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR CCA 90 bp | CGGTTACTTTTGGGTGACATGTCCTTTTACTTGACGGCATACTCCATGTGTTTTCTAGAAAATGCTATCTaGTATTCTCAACAGCTATGT | + |
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Preference number: 2 (lower is better) Translates to: RLLLGDMSFYLTAYSMCFLENAI*YSQQLC Trigger: ACATAGCTGTTGAGAATACCAGATAGCATTTTCTAG...AAAACACATGGAGTATGCCGTCAAGTAAAAGGACATGTCACCCAAAAGTAACCG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR GCA 90 bp | ATAAAACTACTTCAAGACACCAGTTCTAGAACACAAAGCAGACTCCACAGCAGATCAGAAAGAATAAAGTaGTATACAAAGGCCTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: IKLLQDTSSRTQSRLHSRSERIK*YTKASF Trigger: AAAGGAGGCCTTTGTATAGCACTTTATTCTTTCTGA...TCTGCTGTGGAGTCTGCTTTGTGTTCTAGAACTGGTGTCTTGAAGTAGTTTTAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CCA 72 bp | AGGGCTTTTGTTTGCTCTGGTCAACCCTGCTCCCTCTaGTCGGCCCCACCACGCTCGACCGGTCAACTCTGC | + |
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Preference number: 3 (lower is better) Translates to: RAFVCSGQPCSL*SAPPRSTGQLC Trigger: GCAGAGTTGACCGGTCGAGCGTGGTGGGGCCGACCAGAGGGAGCAGGGTTGACCAGAGCAAACAAAAGCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR TCA 72 bp | GCTCTAGTCCTCCCGCTGATCCGGGCTGCACTGTGCTaGCCACTTTGCGTCCCTTCAGGCACTCCTCTGGAA | + |
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Preference number: 3 (lower is better) Translates to: ALVLPLIRAALC*PLCVPSGTPLE Trigger: TTCCAGAGGAGTGCCTGAAGGGACGCAAAGTGGTCAGCACAGTGCAGCCCGGATCAGCGGGAGGACTAGAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR TCA 72 bp | AGCTTCACGCCAATGAGCTTAGCTTGTGCTGGCGGCTaGACTCAGGATCCTGTCCTGCACAGGCTAGGCAGG | + |
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Preference number: 3 (lower is better) Translates to: SFTPMSLACAGG*TQDPVLHRLGR Trigger: CCTGCCTAGCCTGTGCAGGACAGGATCCTGAGTTCAGCCGCCAGCACAAGCTAAGCTCATTGGCGTGAAGCT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CCA 72 bp | GGATTCCAGCTTCACGCCAATGAGCTTAGCTTGTGCTaGCGGCTGAACTCAGGATCCTGTCCTGCACAGGCT | + |
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Preference number: 3 (lower is better) Translates to: GFQLHANELSLC*RLNSGSCPAQA Trigger: AGCCTGTGCAGGACAGGATCCTGAGTTCAGCCGCCAGCACAAGCTAAGCTCATTGGCGTGAAGCTGGAATCC 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR TCA 72 bp | GTCCCTTCAGGCACTCCTCTGGAACGTTTTCCCTTGTaGTGGTGTGGTGTTTCAGAAAGCAACGCATGCTGC | + |
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Preference number: 3 (lower is better) Translates to: VPSGTPLERFPL*WCGVSESNACC Trigger: GCAGCATGCGTTGCTTTCTGAAACACCACACCATCACAAGGGAAAACGTTCCAGAGGAGTGCCTGAAGGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR GCA 72 bp | CTCTGGTCGGCCCCACCACGCTCGACCGGTCAACTCTaGTTGCTCAGGCCGAAAGATATATTTATTATTATA | + |
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Preference number: 3 (lower is better) Translates to: LWSAPPRSTGQL*LLRPKDIFIII Trigger: TATAATAATAAATATATCTTTCGGCCTGAGCAAGCAGAGTTGACCGGTCGAGCGTGGTGGGGCCGACCAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR GCA 72 bp | AGAACACAAAGCAGACTCCACAGCAGAGGCCGGGCGTaGCATTTCTCCAAATTACTCTTAGGTAGTTTGGTT | + |
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Preference number: 3 (lower is better) Translates to: RTQSRLHSRGRA*HFSKLLLGSLV Trigger: AACCAAACTACCTAAGAGTAATTTGGAGAAATGGCACGCCCGGCCTCTGCTGTGGAGTCTGCTTTGTGTTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR CAA 90 bp | GGGCAGAGTAGAGCCTCACTTACTCATGCCAGGGGCACTTTTGAAAGAAACTTTAAAACACCCATGACTTaGAGGTCTGACCCTGGACAT | + |
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Preference number: 3 (lower is better) Translates to: GQSRASLTHARGTFERNFKTPMT*RSDPGH Trigger: ATGTCCAGGGTCAGACCTCAAAGTCATGGGTGTTTT...AAAGTTTCTTTCAAAAGTGCCCCTGGCATGAGTAAGTGAGGCTCTACTCTGCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CCA 72 bp | ACTTTGAGGTCTGACCCTGGACATGACCCAGAAGTATaGAATCCTCTGACTCTTCATTCCTTCCTTTCCAAC | + |
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Preference number: 3 (lower is better) Translates to: TLRSDPGHDPEV*NPLTLHSFLSN Trigger: GTTGGAAAGGAAGGAATGAAGAGTCAGAGGATTCCATACTTCTGGGTCATGTCCAGGGTCAGACCTCAAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR TCA 72 bp | TTAAGTGTACCTTGTGTACATAGCTACATGCATGTCTaGCTGTCAGCTTCTCCAAGTCTCCACCATCTGCAG | + |
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Preference number: 3 (lower is better) Translates to: LSVPCVHSYMHV*LSASPSLHHLQ Trigger: CTGCAGATGGTGGAGACTTGGAGAAGCTGACAGTCAGACATGCATGTAGCTATGTACACAAGGTACACTTAA 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR GCA 72 bp | AAGAAAGAGAGAGCAGCTGTGGGAGATGTTAGCCACTaGCACATAGAAATGAAGATACGTAGGTATTTGGCC | + |
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Preference number: 3 (lower is better) Translates to: KKERAAVGDVSH*HIEMKIRRYLA Trigger: GGCCAAATACCTACGTATCTTCATTTCTATGTGGCAGTGGCTAACATCTCCCACAGCTGCTCTCTCTTTCTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CCA 72 bp | TCCAAATTACTCTTAGGTAGTTTGGTTAGAAAGAGCTaGCCTTGTCCTGGATTCCAGCTTCACGCCAATGAG | + |
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Preference number: 3 (lower is better) Translates to: SKLLLGSLVRKS*PCPGFQLHANE Trigger: CTCATTGGCGTGAAGCTGGAATCCAGGACAAGGCCAGCTCTTTCTAACCAAACTACCTAAGAGTAATTTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR TCA 72 bp | CAGATGGATGTGAGCCTTCATGTGGTTGTTGGGAATTaGATTTTTAGGGCTTTTGTTTGCTCTGGTCAACCC | + |
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Preference number: 3 (lower is better) Translates to: QMDVSLHVVVGN*IFRAFVCSGQP Trigger: GGGTTGACCAGAGCAAACAAAAGCCCTAAAAATTCAATTCCCAACAACCACATGAAGGCTCACATCCATCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR TCA 72 bp | TCATTCCTTCCTTTCCAACAGAGAAGTGTTTTAATCTaGCAGACTACTCAGCCAGTGGTGTGCTCTTTACTC | + |
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Preference number: 3 (lower is better) Translates to: SFLPFQQRSVLI*QTTQPVVCSLL Trigger: GAGTAAAGAGCACACCACTGGCTGAGTAGTCTGTCAGATTAAAACACTTCTCTGTTGGAAAGGAAGGAATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR CAA 90 bp | GCAACGCATGCTGCCGCATACTCTTGGAGTTTAAAAAGTGGGTATTTAAGTACTTTACTCTTAGGTAGTTaGGTTAGAAAGAGCTGGCCT | + |
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Preference number: 3 (lower is better) Translates to: ATHAAAYSWSLKSGYLSTLLLGS*VRKSWP Trigger: AGGCCAGCTCTTTCTAACCAAACTACCTAAGAGTAA...AGTACTTAAATACCCACTTTTTAAACTCCAAGAGTATGCGGCAGCATGCGTTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR-3UTR CAA 90 bp | CACTGCCACATAGAAATGAAGATACGTAGGTATTTGGCCTACATTTTTCAAATTTGCTGCCGCATACTCTaGGAGTTTAAAAAGTGGGTA | + |
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Preference number: 3 (lower is better) Translates to: HCHIEMKIRRYLAYIFQICCRIL*EFKKWV Trigger: TACCCACTTTTTAAACTCCAAGAGTATGCGGCAGCA...AATTTGAAAAATGTAGGCCAAATACCTACGTATCTTCATTTCTATGTGGCAGTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CAA 72 bp | CCTCCCGCTGATCCGGGCTGCACTGTGCTGACCACTTaGCGTCCCTTCAGGCACTCCTCTGGAACGTTTTCC | + |
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Preference number: 4 (lower is better) Translates to: PPADPGCTVLTT*RPFRHSSGTFS Trigger: GGAAAACGTTCCAGAGGAGTGCCTGAAGGGACGCAAAGTGGTCAGCACAGTGCAGCCCGGATCAGCGGGAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| CDS-3UTR CCA 90 bp | AGTGTAGTGCCACTGGGATGTCGCCTGGTCACCCACAGCGTAGTGCAGTGCCACTGGGCATCCAGCTGCTaGCAAGCTCGCTGGCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: SVVPLGCRLVTHSVVQCHWASSC*QARWLL Trigger: AAGAAGCCAGCGAGCTTGCCAGCAGCTGGATGCCCA...GTGGCACTGCACTACGCTGTGGGTGACCAGGCGACATCCCAGTGGCACTACACT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| CDS-3UTR TCA 90 bp | CGTAGTGTAGTGCCACTGGGATGTCGCCTGGTCACCCACAGCGTAGTGCAGTGCGCCTCCCTGGGAACCTaGATATTCTTCTGGGCATCC | + |
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Preference number: 4 (lower is better) Translates to: RSVVPLGCRLVTHSVVQCASLGT*IFFWAS Trigger: GGATGCCCAGAAGAATATTCAGGTTCCCAGGGAGGC...GCACTGCACTACGCTGTGGGTGACCAGGCGACATCCCAGTGGCACTACACTACG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| CDS-3UTR GCA 90 bp | AGTGTAGTGCCACTGGGATGTCGCCTGGTCACCCACAGCGTAGTGCAGTGCCACCTCCTCGGCGGCCTTTaGTTCATTTTGGTTTTTCAT | + |
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Preference number: 4 (lower is better) Translates to: SVVPLGCRLVTHSVVQCHLLGGL*FILVFH Trigger: ATGAAAAACCAAAATGAAGCAAAGGCCGCCGAGGAG...GTGGCACTGCACTACGCTGTGGGTGACCAGGCGACATCCCAGTGGCACTACACT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| CDS-3UTR GCA 90 bp | GCAACGCATGCTGCCGCATACTCTTGGAGTTTAAAAAGTGGGTATTTAAGTACTTTCTGGGCATCCAGCTaGTGGCAAGCTCGCTGGCTT | + |
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Preference number: 4 (lower is better) Translates to: ATHAAAYSWSLKSGYLSTFWASS*WQARWL Trigger: AAGCCAGCGAGCTTGCCAGCAGCTGGATGCCCAGAA...AGTACTTAAATACCCACTTTTTAAACTCCAAGAGTATGCGGCAGCATGCGTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CAA 72 bp | CGGGCGTGCCATTTCTCCAAATTACTCTTAGGTAGTTaGGTTAGAAAGAGCTGGCCTTGTCCTGGATTCCAG | + |
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Preference number: 4 (lower is better) Translates to: RACHFSKLLLGS*VRKSWPCPGFQ Trigger: CTGGAATCCAGGACAAGGCCAGCTCTTTCTAACCAAACTACCTAAGAGTAATTTGGAGAAATGGCACGCCCG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CAA 72 bp | GTTGTGAGCCACCATGTGGATTTGAACTCAGGACCTTaGGTAGAGCAGTCAGTGTTCTTACCCACTGATCCA | + |
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Preference number: 4 (lower is better) Translates to: VVSHHVDLNSGP*VEQSVFLPTDP Trigger: TGGATCAGTGGGTAAGAACACTGACTGCTCTACCAAAGGTCCTGAGTTCAAATCCACATGGTGGCTCACAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CAA 72 bp | TGGTCGGCCCCACCACGCTCGACCGGTCAACTCTGCTaGCTCAGGCCGAAAGATATATTTATTATTATAATT | + |
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Preference number: 4 (lower is better) Translates to: WSAPPRSTGQLC*LRPKDIFIIII Trigger: AATTATAATAATAAATATATCTTTCGGCCTGAGCAAGCAGAGTTGACCGGTCGAGCGTGGTGGGGCCGACCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| CDS-3UTR GCA 90 bp | ATAAAACTACTTCAAGACACCAGTTCTAGAACACAAAGCAGACTCCACAGCAGAAGCCTCATTTCATCCTaGTTACTCTTCAGTCGCATC | + |
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Preference number: 4 (lower is better) Translates to: IKLLQDTSSRTQSRLHSRSLISS*LLFSRI Trigger: GATGCGACTGAAGAGTAAGCAGGATGAAATGAGGCT...TCTGCTGTGGAGTCTGCTTTGTGTTCTAGAACTGGTGTCTTGAAGTAGTTTTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| 3UTR CAA 72 bp | GCAGACTCACTAGTCAGACATAACAAACATTCCTACTaGAATGGTCACCAGAACTCGAGGCACATTAACATT | + |
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Preference number: 4 (lower is better) Translates to: ADSLVRHNKHSY*NGHQNSRHINI Trigger: AATGTTAATGTGCCTCGAGTTCTGGTGACCATTCAAGTAGGAATGTTTGTTATGTCTGACTAGTGAGTCTGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| CDS-3UTR TCA 90 bp | CGGTTACTTTTGGGTGACATGTCCTTTTACTTGACGGCATACTCCATGTGTTTTTTTAATGATGACTCATaGCCTATGCCACTTTTTCCT | + |
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Preference number: 4 (lower is better) Translates to: RLLLGDMSFYLTAYSMCFFNDDS*PMPLFP Trigger: AGGAAAAAGTGGCATAGGTCATGAGTCATCATTAAA...AAAACACATGGAGTATGCCGTCAAGTAAAAGGACATGTCACCCAAAAGTAACCG 40% GC, longest homopolymer 7 nt, total homopolymer stretches 20 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| CDS-3UTR GCA 90 bp | ATAAAACTACTTCAAGACACCAGTTCTAGAACACAAAGCAGACTCCACAGCAGATCTTTTACGCTCTTCTaGCTGTTTCTCAGATTAGCT | + |
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Preference number: 4 (lower is better) Translates to: IKLLQDTSSRTQSRLHSRSFTLF*LFLRLA Trigger: AGCTAATCTGAGAAACAGGCAGAAGAGCGTAAAAGA...TCTGCTGTGGAGTCTGCTTTGTGTTCTAGAACTGGTGTCTTGAAGTAGTTTTAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| CDS-3UTR CAA 90 bp | CGTAGTGTAGTGCCACTGGGATGTCGCCTGGTCACCCACAGCGTAGTGCAGTGCAGCAGAGCGAACCCTTaGTTTTCACAGCCGAGTGCA | + |
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Preference number: 5 (lower is better) Translates to: RSVVPLGCRLVTHSVVQCSRANP*FSQPSA Trigger: TGCACTCGGCTGTGAAAACAAAGGGTTCGCTCTGCT...GCACTGCACTACGCTGTGGGTGACCAGGCGACATCCCAGTGGCACTACACTACG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| CDS-3UTR CAA 90 bp | CGTAGTGTAGTGCCACTGGGATGTCGCCTGGTCACCCACAGCGTAGTGCAGTGCTTTCCTGTTTTGACATaGAGAGGAATTGGTTCAACA | + |
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Preference number: 5 (lower is better) Translates to: RSVVPLGCRLVTHSVVQCFPVLT*RGIGST Trigger: TGTTGAACCAATTCCTCTCAATGTCAAAACAGGAAA...GCACTGCACTACGCTGTGGGTGACCAGGCGACATCCCAGTGGCACTACACTACG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| CDS GCA 72 bp | CTTCTTCTCAGGTCTCCTTCGAGCCTCATTTCATCCTaGTTACTCTTCAGTCGCATCCGAAACTCCTCGGCG | + |
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Preference number: 6 (lower is better) Translates to: LLLRSPSSLISS*LLFSRIRNSSA Trigger: CGCCGAGGAGTTTCGGATGCGACTGAAGAGTAAGCAGGATGAAATGAGGCTCGAAGGAGACCTGAGAAGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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| CDS TCA 72 bp | AAATGCAATACAGGTGCTCTTCTCGCAAGTAGCCAGTaGGGATCTGCAGCTTTTCTAGCACACTCAAATCTT | + |
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Preference number: 6 (lower is better) Translates to: KCNTGALLASSQ*GSAAFLAHSNL Trigger: AAGATTTGAGTGTGCTAGAAAAGCTGCAGATCCTCACTGGCTACTTGCGAGAAGAGCACCTGTATTGCATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170759.3 |
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