RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GPAM (Mus musculus)

Ensembl gene IDs: ENSMUSG00000024978

Ensembl transcript IDs: ENSMUST00000061856.6, ENSMUST00000235957.2, ENSMUST00000236422.2, ENSMUST00000236859.2, ENSMUST00000237146.2

Found 374 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp ACGTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATaGCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGG +
Preference number: 1 (lower is better)
Translates to: TCLPGSLLGVGQAGP*QDTCHSGSDWRLQG
Trigger: CCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACACGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR CCA 90 bp AGAAGGCACGTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTaGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCT +
Preference number: 1 (lower is better)
Translates to: RRHVSSWKSPRGRAG*AMPGYLPLWVRLEA
Trigger: AGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACACGTGCCTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR GCA 90 bp CTATCAGATGCAGTCCTGTCCGCACCGCAGGGCACTGCAGGGCACTaGATGTTCCCACGGATCCCCATCTCAGGGCATCACGATACTGCA +
Preference number: 1 (lower is better)
Translates to: LSDAVLSAPQGTAGH*MFPRIPISGHHDTA
Trigger: TGCAGTATCGTGATGCCCTGAGATGGGGATCCGTGGGAACATGCAGTGCCCTGCAGTGCCCTGCGGTGCGGACAGGACTGCATCTGATAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR CCA 90 bp GTGGCCCACATAAATGTCCTTGCCTCCAACCACCTGCCACTCAGCTaGGTCACTGTGCATGCTACACAGGCTGCACAGTGCGCCATCTGG +
Preference number: 1 (lower is better)
Translates to: VAHINVLASNHLPLS*VTVHATQAAQCAIW
Trigger: CCAGATGGCGCACTGTGCAGCCTGTGTAGCATGCACAGTGACCCAGCTGAGTGGCAGGTGGTTGGAGGCAAGGACATTTATGTGGGCCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
3UTR GCA 90 bp TGTCCTTGCCTCCAACCACCTGCCACTCAGCTGGGTCACTGTGCATaGTACACAGGCTGCACAGTGCGCCATCTGGGTACAAGCCATACA +
Preference number: 1 (lower is better)
Translates to: CPCLQPPATQLGHCA*YTGCTVRHLGTSHT
Trigger: TGTATGGCTTGTACCCAGATGGCGCACTGTGCAGCCTGTGTAGCATGCACAGTGACCCAGCTGAGTGGCAGGTGGTTGGAGGCAAGGACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
3UTR TCA 90 bp ATGAGGAAGGCACTGCAGCCAGCTTCCTGTGCTTGCTCTCTCCAGTaGGGAAAGATACCCGAGCACACCACAGTGCATCGTGAGCGATAC +
Preference number: 1 (lower is better)
Translates to: MRKALQPASCACSLQ*GKIPEHTTVHRERY
Trigger: GTATCGCTCACGATGCACTGTGGTGTGCTCGGGTATCTTTCCTCACTGGAGAGAGCAAGCACAGGAAGCTGGCTGCAGTGCCTTCCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR GCA 90 bp GCGTACACGGCAACGTTCCTTTCCGTCCTGGTGATAAGGTACCTGTaGAGTTTCTGCAGGTACTCAGACTCGGGAACTGGACCGCTGAAG +
Preference number: 1 (lower is better)
Translates to: AYTATFLSVLVIRYL*SFCRYSDSGTGPLK
Trigger: CTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR GCA 90 bp GCAACGTTCCTTTCCGTCCTGGTGATAAGGTACCTGTGCAGTTTCTaGAGGTACTCAGACTCGGGAACTGGACCGCTGAAGTTGTGGACA +
Preference number: 1 (lower is better)
Translates to: ATFLSVLVIRYLCSF*RYSDSGTGPLKLWT
Trigger: TGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR GCA 90 bp AACAGTTTGGGAAATGCTACGTGCATCAGTCTGTGTACTATCAGATaGAGTCCTGTCCGCACCGCAGGGCACTGCAGGGCACTGCATGTT +
Preference number: 1 (lower is better)
Translates to: NSLGNATCISLCTIR*SPVRTAGHCRALHV
Trigger: AACATGCAGTGCCCTGCAGTGCCCTGCGGTGCGGACAGGACTGCATCTGATAGTACACAGACTGATGCACGTAGCATTTCCCAAACTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR TCA 90 bp CGCACACTAAAGGGGTCTGCGGGAACCCAGAGTGTCTCTGTGATGTaGGCAGGCATCCCCATTGCCAAATGTTTCATCAAGGTTGAAGGA +
Preference number: 1 (lower is better)
Translates to: RTLKGSAGTQSVSVM*AGIPIAKCFIKVEG
Trigger: TCCTTCAACCTTGATGAAACATTTGGCAATGGGGATGCCTGCTCACATCACAGAGACACTCTGGGTTCCCGCAGACCCCTTTAGTGTGCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR TCA 90 bp TGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCGAGATAGGTGCTaGGAGATCGCTACAGCACCACAAAACTCAGAATATACTCTAGGA +
Preference number: 1 (lower is better)
Translates to: WRLQGTHQLLARDRC*EIATAPQNSEYTLG
Trigger: TCCTAGAGTATATTCTGAGTTTTGTGGTGCTGTAGCGATCTCTCAGCACCTATCTCGAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR TCA 90 bp GCTACTCTCAGTTTTAAAAAGGCCAGGGTTGTGGTAGATCCTTCATaGGGAAGGCACTGCAGCCAGCTTCCTGTGCTTGCTCTCTCCAGT +
Preference number: 1 (lower is better)
Translates to: ATLSFKKARVVVDPS*GRHCSQLPVLALSS
Trigger: ACTGGAGAGAGCAAGCACAGGAAGCTGGCTGCAGTGCCTTCCTCATGAAGGATCTACCACAACCCTGGCCTTTTTAAAACTGAGAGTAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR GCA 90 bp ACAGCACCACAAAACTCAGAATATACTCTAGGAGTTTCTGCCGGTTaGACTGAGGTAGGAAAGTACTGCTCAGTTCTAGAACAGACACTC +
Preference number: 1 (lower is better)
Translates to: TAPQNSEYTLGVSAG*TEVGKYCSVLEQTL
Trigger: GAGTGTCTGTTCTAGAACTGAGCAGTACTTTCCTACCTCAGTGCAACCGGCAGAAACTCCTAGAGTATATTCTGAGTTTTGTGGTGCTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR TCA 90 bp ACCACAAAACTCAGAATATACTCTAGGAGTTTCTGCCGGTTGCACTaGGGTAGGAAAGTACTGCTCAGTTCTAGAACAGACACTCGCTTT +
Preference number: 1 (lower is better)
Translates to: TTKLRIYSRSFCRLH*GRKVLLSSRTDTRF
Trigger: AAAGCGAGTGTCTGTTCTAGAACTGAGCAGTACTTTCCTACCTCAGTGCAACCGGCAGAAACTCCTAGAGTATATTCTGAGTTTTGTGGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR GCA 90 bp GGAAATCTAGGACTTCACTGTCCTTTTTGTAAAGTTAAATATCTATaGAAACAGATGGCAGAACGCACACTAAAGGGGTCTGCGGGAACC +
Preference number: 1 (lower is better)
Translates to: GNLGLHCPFCKVKYL*KQMAERTLKGSAGT
Trigger: GGTTCCCGCAGACCCCTTTAGTGTGCGTTCTGCCATCTGTTTGCATAGATATTTAACTTTACAAAAAGGACAGTGAAGTCCTAGATTTCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR TCA 90 bp AAAGCACCAGTTAATTATGAAAAGCGTGCGTGCCTATCCTCACAGTaGGTTAATTGTCAGGCAACAGCAAGTCTGACTGCAGTTCTTAAA +
Preference number: 1 (lower is better)
Translates to: KAPVNYEKRACLSSQ*VNCQATASLTAVLK
Trigger: TTTAAGAACTGCAGTCAGACTTGCTGTTGCCTGACAATTAACTCACTGTGAGGATAGGCACGCACGCTTTTCATAATTAACTGGTGCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR TCA 90 bp GTCCACAGTTTAAGAGAGTCAGGAAGGCTAGAGTGTGTTCCTGGCTaGATGGACATAACACTTGTTTTGCCTTCATTTTTCCTTAGGATT +
Preference number: 1 (lower is better)
Translates to: VHSLRESGRLECVPG*MDITLVLPSFFLRI
Trigger: AATCCTAAGGAAAAATGAAGGCAAAACAAGTGTTATGTCCATTCAGCCAGGAACACACTCTAGCCTTCCTGACTCTCTTAAACTGTGGAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR TCA 90 bp AAATTAACTCAAGGGTCAGCTTGTCAGGAAGAGCATAACTTTGGTTaGGATTTTTCTTCCATAAGAAAGGTTTCAAAGCACCAGTTAATT +
Preference number: 1 (lower is better)
Translates to: KLTQGSACQEEHNFG*DFSSIRKVSKHQLI
Trigger: AATTAACTGGTGCTTTGAAACCTTTCTTATGGAAGAAAAATCTCAACCAAAGTTATGCTCTTCCTGACAAGCTGACCCTTGAGTTAATTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR CCA 90 bp CAGGCCACTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACCGGGGTAGGGCAGGCTaGGCCATGCCAGGATACCTG +
Preference number: 2 (lower is better)
Translates to: QATASVLGGAQVHGGRRHRGRAG*AMPGYL
Trigger: CAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG...GTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAGTGGCCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR-3UTR TCA 90 bp ATCAGATGCAGTCCTGTCCGCACCGCAGGGCACTGCAGGGCACTGCATGTTCCCAGATGGCACTGGCCCTaGGTGCTCTGCGCAGGCCAC +
Preference number: 2 (lower is better)
Translates to: IRCSPVRTAGHCRALHVPRWHWP*VLCAGH
Trigger: GTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCT...GGGAACATGCAGTGCCCTGCAGTGCCCTGCGGTGCGGACAGGACTGCATCTGAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR GCA 90 bp CAGGCCACTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACCCATGCCAGGATACCTaGCACTCTGGGTCAGACTGG +
Preference number: 2 (lower is better)
Translates to: QATASVLGGAQVHGGRRHPCQDT*HSGSDW
Trigger: CCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGG...GTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAGTGGCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR-3UTR CCA 90 bp GGGTCACTGTGCATGCTACACAGGCTGCACAGTGCGCCATCTGGGTACAAGCCACGGGGTAGGGCAGGCTaGGCCATGCCAGGATACCTG +
Preference number: 2 (lower is better)
Translates to: GSLCMLHRLHSAPSGYKPRGRAG*AMPGYL
Trigger: CAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG...TGGCTTGTACCCAGATGGCGCACTGTGCAGCCTGTGTAGCATGCACAGTGACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
3UTR-3UTR CCA 90 bp GATCATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCGGGGTAGGGCAGGCTaGGCCATGCCAGGATACCTG +
Preference number: 2 (lower is better)
Translates to: DHESQMALALSALRRPLRRGRAG*AMPGYL
Trigger: CAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG...ACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATGATC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR-3UTR GCA 90 bp GTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCCATGCCAGGATACCTaGCACTCTGGGTCAGACTGG +
Preference number: 2 (lower is better)
Translates to: VSSWKSPRGRAGWAMPGYPCQDT*HSGSDW
Trigger: CCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGG...GTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR-3UTR CCA 90 bp CAACCACCTGCCACTCAGCTGGGTCACTGTGCATGCTACACAGGCTGCACAGTGCGTCTCTGCGCAAGCTaGGGAGCAGCGCTCATTTGC +
Preference number: 2 (lower is better)
Translates to: QPPATQLGHCACYTGCTVRLCAS*GAALIC
Trigger: GCAAATGAGCGCTGCTCCCCAGCTTGCGCAGAGACG...CACTGTGCAGCCTGTGTAGCATGCACAGTGACCCAGCTGAGTGGCAGGTGGTTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR GCA 90 bp TCAGTCTGTGTACTATCAGATGCAGTCCTGTCCGCACCGCAGGGCACTGCAGGGGGAGCAGCGCTCATTTaGAGAGCTGACAAGCAGGGC +
Preference number: 2 (lower is better)
Translates to: SVCVLSDAVLSAPQGTAGGAALI*RADKQG
Trigger: GCCCTGCTTGTCAGCTCTGCAAATGAGCGCTGCTCC...CCCTGCAGTGCCCTGCGGTGCGGACAGGACTGCATCTGATAGTACACAGACTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR TCA 90 bp TCAGTCTGTGTACTATCAGATGCAGTCCTGTCCGCACCGCAGGGCACTGCAGGGACCAGAGTCACCTCCTaGTGCTGGCTCTTTCCTCAG +
Preference number: 2 (lower is better)
Translates to: SVCVLSDAVLSAPQGTAGTRVTS*CWLFPQ
Trigger: CTGAGGAAAGAGCCAGCATCAGGAGGTGACTCTGGT...CCCTGCAGTGCCCTGCGGTGCGGACAGGACTGCATCTGATAGTACACAGACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR GCA 90 bp GCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCAGACAGATCAGAGGAAGCAGCACAGCTCACCCTTaGCAACCAGAGTCACCTCCT +
Preference number: 2 (lower is better)
Translates to: AELTSRAATPTGRQIRGSSTAHP*QPESPP
Trigger: AGGAGGTGACTCTGGTTGGCAAGGGTGAGCTGTGCT...GCTTCCTCTGATCTGTCTGCCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR GCA 90 bp TCAGTCTGTGTACTATCAGATGCAGTCCTGTCCGCACCGCAGGGCACTGCAGGGCTGGGTCACTGTGCATaGTACACAGGCTGCACAGTG +
Preference number: 2 (lower is better)
Translates to: SVCVLSDAVLSAPQGTAGLGHCA*YTGCTV
Trigger: CACTGTGCAGCCTGTGTAGCATGCACAGTGACCCAG...CCCTGCAGTGCCCTGCGGTGCGGACAGGACTGCATCTGATAGTACACAGACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR GCA 90 bp GGAGCAGCGCTCATTTGCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCAGGTGATGAATTGCTGGTaGTCCTTGGACTGGCTCACC +
Preference number: 2 (lower is better)
Translates to: GAALICRADKQGSNTHWQVMNCW*SLDWLT
Trigger: GGTGAGCCAGTCCAAGGAGCACCAGCAATTCATCAC...CTGCCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGCAAATGAGCGCTGCTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR-3UTR GCA 90 bp TGCCATCCATCCCAGATATACTTTTCTGCATTCGGCCTCCTGACGTCCACAGTTGGACGCACACGTCTCTaGGCAAGCTGGGGAGCAGCG +
Preference number: 2 (lower is better)
Translates to: CHPSQIYFSAFGLLTSTVGRTRL*ASWGAA
Trigger: CGCTGCTCCCCAGCTTGCGCAGAGACGTGTGCGTCC...AACTGTGGACGTCAGGAGGCCGAATGCAGAAAAGTATATCTGGGATGGATGGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR GCA 90 bp CGAGCTCCTCAAAAGCAGCAGGTGTCAATCACTCAAAGGTATCAGCAACAGGGACTCTGCGCAGGCCACTaGGTCTGTGTTGGGAGGAGC +
Preference number: 2 (lower is better)
Translates to: RAPQKQQVSITQRYQQQGLCAGH*VCVGRS
Trigger: GCTCCTCCCAACACAGACGCAGTGGCCTGCGCAGAG...TCCCTGTTGCTGATACCTTTGAGTGATTGACACCTGCTGCTTTTGAGGAGCTCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
3UTR-3UTR CCA 90 bp GATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCAAGGTGATGAATTGCTaGTGCTCCTTGGACTGGCTC +
Preference number: 2 (lower is better)
Translates to: DTCHSGSDWRLQGTHQLLKVMNC*CSLDWL
Trigger: GAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTT...GAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR-3UTR CCA 90 bp GAGATCGCTACAGCACCACAAAACTCAGAATATACTCTAGGAGTTTCTGCCGGTCGGGGTAGGGCAGGCTaGGCCATGCCAGGATACCTG +
Preference number: 2 (lower is better)
Translates to: EIATAPQNSEYTLGVSAGRGRAG*AMPGYL
Trigger: CAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG...ACCGGCAGAAACTCCTAGAGTATATTCTGAGTTTTGTGGTGCTGTAGCGATCTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR-3UTR CCA 90 bp ATTTGGAAAGCAAATGCCCCTCCCCCTCTGGCTTACTTGGCTTGGCCTCACTTAAGGCACGTGTCTTCCTaGAAGTCTCCTCGGGGTAGG +
Preference number: 2 (lower is better)
Translates to: IWKANAPPPLAYLAWPHLRHVSS*KSPRGR
Trigger: CCTACCCCGAGGAGACTTCCAGGAAGACACGTGCCT...TAAGTGAGGCCAAGCCAAGTAAGCCAGAGGGGGAGGGGCATTTGCTTTCCAAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR GCA 90 bp GGCATAAACGTCAGTCAACATTTCCAAGGCAGTGTCCTTCACAAAGTCACACAGCTCTGCGCAGGCCACTaGGTCTGTGTTGGGAGGAGC +
Preference number: 2 (lower is better)
Translates to: GINVSQHFQGSVLHKVTQLCAGH*VCVGRS
Trigger: GCTCCTCCCAACACAGACGCAGTGGCCTGCGCAGAG...CTGTGTGACTTTGTGAAGGACACTGCCTTGGAAATGTTGACTGACGTTTATGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR GCA 90 bp CATCCTAACAAAGTCCAAAAGGGAGAGCACGGCAAGGGACGTGGGACGCACACGAGAAAGGTGATGAATTaGTGGTGCTCCTTGGACTGG +
Preference number: 2 (lower is better)
Translates to: HPNKVQKGEHGKGRGTHTRKVMN*WCSLDW
Trigger: CCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCT...CGTGTGCGTCCCACGTCCCTTGCCGTGCTCTCCCTTTTGGACTTTGTTAGGATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR-3UTR GCA 90 bp ATTTGGAAAGCAAATGCCCCTCCCCCTCTGGCTTACTTGGCTTGGCCTCACTTAAAAGGAGGTGTGACATaGACAAGGCAAGGGCGGAGG +
Preference number: 2 (lower is better)
Translates to: IWKANAPPPLAYLAWPHLKGGVT*TRQGRR
Trigger: CCTCCGCCCTTGCCTTGTGCATGTCACACCTCCTTT...TAAGTGAGGCCAAGCCAAGTAAGCCAGAGGGGGAGGGGCATTTGCTTTCCAAAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR TCA 90 bp TGCCATCCATCCCAGATATACTTTTCTGCATTCGGCCTCCTGACGTCCACAGTTCAGCCTCTCACCTCCTaGCTGCAGTGTCATCTGCTT +
Preference number: 2 (lower is better)
Translates to: CHPSQIYFSAFGLLTSTVQPLTS*LQCHLL
Trigger: AAGCAGATGACACTGCAGTCAGGAGGTGAGAGGCTG...AACTGTGGACGTCAGGAGGCCGAATGCAGAAAAGTATATCTGGGATGGATGGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR TCA 90 bp ATCGTGAGCGATACAAAAAGCATGCAGCCTGCCTGCCACTGTTGTGACTTTTGGTACTCAGATACATCTTaGGTGTGCCGGCGCAGGACA +
Preference number: 2 (lower is better)
Translates to: IVSDTKSMQPACHCCDFWYSDTS*VCRRRT
Trigger: TGTCCTGCGCCGGCACACTCAAGATGTATCTGAGTA...CCAAAAGTCACAACAGTGGCAGGCAGGCTGCATGCTTTTTGTATCGCTCACGAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR CCA 90 bp CGAGCTCCTCAAAAGCAGCAGGTGTCAATCACTCAAAGGTATCAGCAACAGGGATTAATGCCACCTTCCTaGCCAAGCACAGCTCACCCT +
Preference number: 2 (lower is better)
Translates to: RAPQKQQVSITQRYQQQGLMPPS*PSTAHP
Trigger: AGGGTGAGCTGTGCTTGGCCAGGAAGGTGGCATTAA...TCCCTGTTGCTGATACCTTTGAGTGATTGACACCTGCTGCTTTTGAGGAGCTCG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
3UTR-3UTR TCA 90 bp GACTCACAGTCTTCCCCTGAAGGGCATGCATTTCAACTTGACAGAAATGCAGTAGCTCATTTGCAGAGCTaGCAAGCAGGGCAGCAACAC +
Preference number: 2 (lower is better)
Translates to: DSQSSPEGHAFQLDRNAVAHLQS*QAGQQH
Trigger: GTGTTGCTGCCCTGCTTGTCAGCTCTGCAAATGAGC...TACTGCATTTCTGTCAAGTTGAAATGCATGCCCTTCAGGGGAAGACTGTGAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR GCA 90 bp ACTCCAGTCCTAGCTTCTATTCCCTGCCATCCATCCCAGATATACTTTTCTGCAGATTTGGAAAGCAAATaGCCCTCCCCCTCTGGCTTA +
Preference number: 2 (lower is better)
Translates to: TPVLASIPCHPSQIYFSADLESK*PSPSGL
Trigger: TAAGCCAGAGGGGGAGGGGCATTTGCTTTCCAAATC...TGCAGAAAAGTATATCTGGGATGGATGGCAGGGAATAGAAGCTAGGACTGGAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR CCA 90 bp TGCCATCCATCCCAGATATACTTTTCTGCATTCGGCCTCCTGACGTCCACAGTTGAGACAGAGAATGGATaGCCCAATTATTTTAAAGGA +
Preference number: 2 (lower is better)
Translates to: CHPSQIYFSAFGLLTSTVETENG*PNYFKG
Trigger: TCCTTTAAAATAATTGGGCCATCCATTCTCTGTCTC...AACTGTGGACGTCAGGAGGCCGAATGCAGAAAAGTATATCTGGGATGGATGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR CAA 90 bp GCTTACTTGGCTTGGCCTCACTTAAAAGCAGAGTGCAGCTTCATATaGCTTAGTATTAGGTTTTTATTTATTAAACTTGACTCACAGTCT +
Preference number: 2 (lower is better)
Translates to: AYLAWPHLKAECSFI*LSIRFLFIKLDSQS
Trigger: AGACTGTGAGTCAAGTTTAATAAATAAAAACCTAATACTAAGCAATATGAAGCTGCACTCTGCTTTTAAGTGAGGCCAAGCCAAGTAAGC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR CCA 72 bp GCGCAGGTCCACGGGGGCAGAAGGCACGTGTCTTCCTaGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATG +
Preference number: 3 (lower is better)
Translates to: AQVHGGRRHVSS*KSPRGRAGWAM
Trigger: CATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACACGTGCCTTCTGCCCCCGTGGACCTGCGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR GCA 72 bp CTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTaGCACTCTGGGTCAGACTGGAGGCTGCAAGGGACT +
Preference number: 3 (lower is better)
Translates to: LGVGQAGPCQDT*HSGSDWRLQGT
Trigger: AGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR GCA 72 bp CCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATaGCAGGATACCTGCCACTCTGGGTCAGACTGGAGG +
Preference number: 3 (lower is better)
Translates to: PGSLLGVGQAGP*QDTCHSGSDWR
Trigger: CCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR GCA 72 bp GCAGTCCTGTCCGCACCGCAGGGCACTGCAGGGCACTaGATGTTCCCACGGATCCCCATCTCAGGGCATCAC +
Preference number: 3 (lower is better)
Translates to: AVLSAPQGTAGH*MFPRIPISGHH
Trigger: GTGATGCCCTGAGATGGGGATCCGTGGGAACATGCAGTGCCCTGCAGTGCCCTGCGGTGCGGACAGGACTGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR CCA 72 bp AGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTaGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCT +
Preference number: 3 (lower is better)
Translates to: RAGWAMPGYLPL*VRLEAARDSSA
Trigger: AGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR CCA 72 bp GTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTaGGCCATGCCAGGATACCTGCCACTCTGGGTCAGA +
Preference number: 3 (lower is better)
Translates to: VSSWKSPRGRAG*AMPGYLPLWVR
Trigger: TCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR GCA 72 bp TTGCCTCCAACCACCTGCCACTCAGCTGGGTCACTGTaGATGCTACACAGGCTGCACAGTGCGCCATCTGGG +
Preference number: 3 (lower is better)
Translates to: LPPTTCHSAGSL*MLHRLHSAPSG
Trigger: CCCAGATGGCGCACTGTGCAGCCTGTGTAGCATGCACAGTGACCCAGCTGAGTGGCAGGTGGTTGGAGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
3UTR GCA 72 bp ACACGTCTCTGCGCAAGCTGGGGAGCAGCGCTCATTTaGAGAGCTGACAAGCAGGGCAGCAACACCCACTGG +
Preference number: 3 (lower is better)
Translates to: TRLCASWGAALI*RADKQGSNTHW
Trigger: CCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGCAAATGAGCGCTGCTCCCCAGCTTGCGCAGAGACGTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235957.2
ENSMUST00000236859.2
3UTR GCA 72 bp ACTATCAGATGCAGTCCTGTCCGCACCGCAGGGCACTaGAGGGCACTGCATGTTCCCACGGATCCCCATCTC +
Preference number: 3 (lower is better)
Translates to: TIRCSPVRTAGH*RALHVPTDPHL
Trigger: GAGATGGGGATCCGTGGGAACATGCAGTGCCCTGCAGTGCCCTGCGGTGCGGACAGGACTGCATCTGATAGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR-3UTR CAA 90 bp CAGGCCACTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACAAGAAAGGTGATGAATaGCTGGTGCTCCTTGGACTG +
Preference number: 3 (lower is better)
Translates to: QATASVLGGAQVHGGRRHKKGDE*LVLLGL
Trigger: CAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTT...GTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAGTGGCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR GCA 72 bp CTCCAACCACCTGCCACTCAGCTGGGTCACTGTGCATaGTACACAGGCTGCACAGTGCGCCATCTGGGTACA +
Preference number: 3 (lower is better)
Translates to: LQPPATQLGHCA*YTGCTVRHLGT
Trigger: TGTACCCAGATGGCGCACTGTGCAGCCTGTGTAGCATGCACAGTGACCCAGCTGAGTGGCAGGTGGTTGGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
3UTR CCA 72 bp CCCACAGATAAACCCAAGGGAGTACACCAGCCTCTCTaGGTGTCCCCCAAGTACAGCCAAGGGAAGTGCCAG +
Preference number: 3 (lower is better)
Translates to: PTDKPKGVHQPL*VSPKYSQGKCQ
Trigger: CTGGCACTTCCCTTGGCTGTACTTGGGGGACACCCAGAGAGGCTGGTGTACTCCCTTGGGTTTATCTGTGGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR TCA 72 bp AACCTAGTGATCATGAATCACAGATGGCACTGGCCCTaGGTGCTCTGCGCAGGCCACTGCGTCTGTGTTGGG +
Preference number: 3 (lower is better)
Translates to: NLVIMNHRWHWP*VLCAGHCVCVG
Trigger: CCCAACACAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATGATCACTAGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
3UTR TCA 72 bp GCACTGCAGCCAGCTTCCTGTGCTTGCTCTCTCCAGTaGGGAAAGATACCCGAGCACACCACAGTGCATCGT +
Preference number: 3 (lower is better)
Translates to: ALQPASCACSLQ*GKIPEHTTVHR
Trigger: ACGATGCACTGTGGTGTGCTCGGGTATCTTTCCTCACTGGAGAGAGCAAGCACAGGAAGCTGGCTGCAGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR GCA 72 bp GCCACTCAGCTGGGTCACTGTGCATGCTACACAGGCTaGACAGTGCGCCATCTGGGTACAAGCCATACACTA +
Preference number: 3 (lower is better)
Translates to: ATQLGHCACYTG*TVRHLGTSHTL
Trigger: TAGTGTATGGCTTGTACCCAGATGGCGCACTGTGCAGCCTGTGTAGCATGCACAGTGACCCAGCTGAGTGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
3UTR GCA 72 bp GGAAATGCTACGTGCATCAGTCTGTGTACTATCAGATaGAGTCCTGTCCGCACCGCAGGGCACTGCAGGGCA +
Preference number: 3 (lower is better)
Translates to: GNATCISLCTIR*SPVRTAGHCRA
Trigger: TGCCCTGCAGTGCCCTGCGGTGCGGACAGGACTGCATCTGATAGTACACAGACTGATGCACGTAGCATTTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR GCA 72 bp ATGCAAACAGATGGCAGAACGCACACTAAAGGGGTCTaGGGGAACCCAGAGTGTCTCTGTGATGTGAGCAGG +
Preference number: 3 (lower is better)
Translates to: MQTDGRTHTKGV*GNPECLCDVSR
Trigger: CCTGCTCACATCACAGAGACACTCTGGGTTCCCGCAGACCCCTTTAGTGTGCGTTCTGCCATCTGTTTGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR GCA 72 bp ATCCTTCATGAGGAAGGCACTGCAGCCAGCTTCCTGTaGTTGCTCTCTCCAGTGAGGAAAGATACCCGAGCA +
Preference number: 3 (lower is better)
Translates to: ILHEEGTAASFL*LLSPVRKDTRA
Trigger: TGCTCGGGTATCTTTCCTCACTGGAGAGAGCAAGCACAGGAAGCTGGCTGCAGTGCCTTCCTCATGAAGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR CCA 72 bp CCTGTGCAGTTTCTGCAGGTACTCAGACTCGGGAACTaGACCGCTGAAGTTGTGGACAAAGATGGCAGCAGA +
Preference number: 3 (lower is better)
Translates to: PVQFLQVLRLGN*TAEVVDKDGSR
Trigger: TCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR-3UTR CAA 90 bp ACAGCGTTCTTCACGAGACAGTATGTGGCACTCTCAGCGTACACGGCAACGTTCACTGGACCGCTGAAGTaGTGGACAAAGATGGCAGCA +
Preference number: 3 (lower is better)
Translates to: TAFFTRQYVALSAYTATFTGPLK*WTKMAA
Trigger: TGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGT...GAACGTTGCCGTGTACGCTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR CCA 72 bp ATTTGCAGAGCTGACAAGCAGGGCAGCAACACCCACTaGCAGACAGATCAGAGGAAGCCACTGAGATTTCAC +
Preference number: 3 (lower is better)
Translates to: ICRADKQGSNTH*QTDQRKPLRFH
Trigger: GTGAAATCTCAGTGGCTTCCTCTGATCTGTCTGCCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGCAAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR GCA 72 bp GGCAGGACAGGAACTCCAGTCCTAGCTTCTATTCCCTaGCATCCATCCCAGATATACTTTTCTGCATTCGGC +
Preference number: 3 (lower is better)
Translates to: GRTGTPVLASIP*HPSQIYFSAFG
Trigger: GCCGAATGCAGAAAAGTATATCTGGGATGGATGGCAGGGAATAGAAGCTAGGACTGGAGTTCCTGTCCTGCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR TCA 72 bp TGTCATCTGCTTTCAGGCAGCTACTCAGATACATCTTaGGTGTGCCGGCGCAGGACAACATTGCTCCTTAGT +
Preference number: 3 (lower is better)
Translates to: CHLLSGSYSDTS*VCRRRTTLLLS
Trigger: ACTAAGGAGCAATGTTGTCCTGCGCCGGCACACTCAAGATGTATCTGAGTAGCTGCCTGAAAGCAGATGACA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
3UTR TCA 72 bp CAAGGGACTCATCAGCTCCTCGCTCGAGATAGGTGCTaGGAGATCGCTACAGCACCACAAAACTCAGAATAT +
Preference number: 3 (lower is better)
Translates to: QGTHQLLARDRC*EIATAPQNSEY
Trigger: ATATTCTGAGTTTTGTGGTGCTGTAGCGATCTCTCAGCACCTATCTCGAGCGAGGAGCTGATGAGTCCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR TCA 72 bp AGTTTTAAAAAGGCCAGGGTTGTGGTAGATCCTTCATaGGGAAGGCACTGCAGCCAGCTTCCTGTGCTTGCT +
Preference number: 3 (lower is better)
Translates to: SFKKARVVVDPS*GRHCSQLPVLA
Trigger: AGCAAGCACAGGAAGCTGGCTGCAGTGCCTTCCTCATGAAGGATCTACCACAACCCTGGCCTTTTTAAAACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR GCA 72 bp CAGATACATCTTGAGTGTGCCGGCGCAGGACAACATTaGTCCTTAGTAAAGCAGTTGAGAGGAAAGGGCTCA +
Preference number: 3 (lower is better)
Translates to: QIHLECAGAGQH*SLVKQLRGKGS
Trigger: TGAGCCCTTTCCTCTCAACTGCTTTACTAAGGAGCAATGTTGTCCTGCGCCGGCACACTCAAGATGTATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
3UTR GCA 72 bp TTCCTCAGCCTCTCACCTCCTGACTGCAGTGTCATCTaGTTTCAGGCAGCTACTCAGATACATCTTGAGTGT +
Preference number: 3 (lower is better)
Translates to: FLSLSPPDCSVI*FQAATQIHLEC
Trigger: ACACTCAAGATGTATCTGAGTAGCTGCCTGAAAGCAGATGACACTGCAGTCAGGAGGTGAGAGGCTGAGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
3UTR CCA 72 bp TCCCAGAGGGGAAAAGGTCCTGAGGTCCAAACAGTTTaGGAAATGCTACGTGCATCAGTCTGTGTACTATCA +
Preference number: 3 (lower is better)
Translates to: SQRGKGPEVQTV*EMLRASVCVLS
Trigger: TGATAGTACACAGACTGATGCACGTAGCATTTCCCAAACTGTTTGGACCTCAGGACCTTTTCCCCTCTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR TCA 72 bp GCAACACCCACTGGCAGACAGATCAGAGGAAGCCACTaGGATTTCACCTATAACCTAGTGATCATGAATCAC +
Preference number: 3 (lower is better)
Translates to: ATPTGRQIRGSH*DFTYNLVIMNH
Trigger: GTGATTCATGATCACTAGGTTATAGGTGAAATCTCAGTGGCTTCCTCTGATCTGTCTGCCAGTGGGTGTTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR TCA 72 bp ATCCATCCCAGATATACTTTTCTGCATTCGGCCTCCTaGCGTCCACAGTTTAAGAGAGTCAGGAAGGCTAGA +
Preference number: 3 (lower is better)
Translates to: IHPRYTFLHSAS*RPQFKRVRKAR
Trigger: TCTAGCCTTCCTGACTCTCTTAAACTGTGGACGTCAGGAGGCCGAATGCAGAAAAGTATATCTGGGATGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR TCA 72 bp CTCAGAATATACTCTAGGAGTTTCTGCCGGTTGCACTaGGGTAGGAAAGTACTGCTCAGTTCTAGAACAGAC +
Preference number: 3 (lower is better)
Translates to: LRIYSRSFCRLH*GRKVLLSSRTD
Trigger: GTCTGTTCTAGAACTGAGCAGTACTTTCCTACCTCAGTGCAACCGGCAGAAACTCCTAGAGTATATTCTGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR TCA 72 bp GTTAATTATGAAAAGCGTGCGTGCCTATCCTCACAGTaGGTTAATTGTCAGGCAACAGCAAGTCTGACTGCA +
Preference number: 3 (lower is better)
Translates to: VNYEKRACLSSQ*VNCQATASLTA
Trigger: TGCAGTCAGACTTGCTGTTGCCTGACAATTAACTCACTGTGAGGATAGGCACGCACGCTTTTCATAATTAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR TCA 72 bp CTTTTGGTCTGCTTAAAGAACAATGAATGTAGTTTCTaGAAAGGTTTTCCACGGCATGCAGTGTCCCAGAGG +
Preference number: 3 (lower is better)
Translates to: LLVCLKNNECSF*KGFPRHAVSQR
Trigger: CCTCTGGGACACTGCATGCCGTGGAAAACCTTTTCAGAAACTACATTCATTGTTCTTTAAGCAGACCAAAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR GCA 72 bp CAAAACTCAGAATATACTCTAGGAGTTTCTGCCGGTTaGACTGAGGTAGGAAAGTACTGCTCAGTTCTAGAA +
Preference number: 3 (lower is better)
Translates to: QNSEYTLGVSAG*TEVGKYCSVLE
Trigger: TTCTAGAACTGAGCAGTACTTTCCTACCTCAGTGCAACCGGCAGAAACTCCTAGAGTATATTCTGAGTTTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
3UTR CCA 72 bp CAGTTTAAGAGAGTCAGGAAGGCTAGAGTGTGTTCCTaGCTGAATGGACATAACACTTGTTTTGCCTTCATT +
Preference number: 3 (lower is better)
Translates to: QFKRVRKARVCS*LNGHNTCFAFI
Trigger: AATGAAGGCAAAACAAGTGTTATGTCCATTCAGCCAGGAACACACTCTAGCCTTCCTGACTCTCTTAAACTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR TCA 72 bp TTAAGAGAGTCAGGAAGGCTAGAGTGTGTTCCTGGCTaGATGGACATAACACTTGTTTTGCCTTCATTTTTC +
Preference number: 3 (lower is better)
Translates to: LRESGRLECVPG*MDITLVLPSFF
Trigger: GAAAAATGAAGGCAAAACAAGTGTTATGTCCATTCAGCCAGGAACACACTCTAGCCTTCCTGACTCTCTTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR GCA 72 bp CTGGCTTACTTGGCTTGGCCTCACTTAAAAGCAGAGTaGAGCTTCATATTGCTTAGTATTAGGTTTTTATTT +
Preference number: 3 (lower is better)
Translates to: LAYLAWPHLKAE*SFILLSIRFLF
Trigger: AAATAAAAACCTAATACTAAGCAATATGAAGCTGCACTCTGCTTTTAAGTGAGGCCAAGCCAAGTAAGCCAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS-3UTR TCA 90 bp CAGGCCACTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACCCCAGCCAGTCAGCCTaGTCATCCCTGGGGAGACGG +
Preference number: 4 (lower is better)
Translates to: QATASVLGGAQVHGGRRHPSQSA*SSLGRR
Trigger: CCGTCTCCCCAGGGATGATCAGGCTGACTGGCTGGG...GTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAGTGGCCTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp GGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTCCCAGCCAGTCAGCCTaGTCATCCCTGGGGAGACGG +
Preference number: 4 (lower is better)
Translates to: GSLLGVGQAGPCQDTCHSPSQSA*SSLGRR
Trigger: CCGTCTCCCCAGGGATGATCAGGCTGACTGGCTGGG...AGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCGCCAGCTGCTCCTGGCTaGTCAGGTTGCCGAGGCCTC +
Preference number: 4 (lower is better)
Translates to: LPLWVRLEAARDSSAPRSPAAPG*SGCRGL
Trigger: GAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGG...CGAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CAGGCCACTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACGCCTTCCTCACCAGCTaGTCCTGGCTGATCAGGTTG +
Preference number: 4 (lower is better)
Translates to: QATASVLGGAQVHGGRRHAFLTS*SWLIRL
Trigger: CAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGC...GTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAGTGGCCTG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGGCCTTCCTCACCAGCTaGTCCTGGCTGATCAGGTTG +
Preference number: 4 (lower is better)
Translates to: SLLGVGQAGPCQDTCHSGAFLTS*SWLIRL
Trigger: CAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGC...CCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGCTGGGCAGATCCATCTaGGTTCAACTCCGCAGCCAC +
Preference number: 4 (lower is better)
Translates to: GVGQAGPCQDTCHSGSDWLGRSI*VQLRSH
Trigger: GTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAG...CCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACGTGTCTTCTCACCAGCTGCTCCTaGCTGATCAGGTTGCCGAGG +
Preference number: 4 (lower is better)
Translates to: LRLCWEERRSTGAEGTCLLTSCS*LIRLPR
Trigger: CCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAG...AAGACACGTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp GGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGCTGCAAGGCCAGGACTaGCATCTTCCTGGTCATCTC +
Preference number: 4 (lower is better)
Translates to: GVGQAGPCQDTCHSGSDWLQGQD*HLPGHL
Trigger: GAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAG...CCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR GCA 90 bp CGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGATGGCTTTGGACTGCTaGTGGGCAGATCCATCTGGG +
Preference number: 4 (lower is better)
Translates to: RGRAGWAMPGYLPLWVRLMALDC*WADPSG
Trigger: CCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCAT...CAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACGTGTCTTCTGGGCAGATCCATCTaGGTTCAACTCCGCAGCCAC +
Preference number: 4 (lower is better)
Translates to: LRLCWEERRSTGAEGTCLLGRSI*VQLRSH
Trigger: GTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAG...AAGACACGTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGCTGGGCAGATCCATCTaGGTTCAACTCCGCAGCCAC +
Preference number: 4 (lower is better)
Translates to: GRAGWAMPGYLPLWVRLELGRSI*VQLRSH
Trigger: GTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAG...CTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTCACCAGCTGCTCCTaGCTGATCAGGTTGCCGAGG +
Preference number: 4 (lower is better)
Translates to: VSSWKSPRGRAGWAMPGYLTSCS*LIRLPR
Trigger: CCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAG...GTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACGAAGGTAGCACAGGCTaGCGGCCTTCCTCACCAGCT +
Preference number: 4 (lower is better)
Translates to: VSSWKSPRGRAGWAMPGYEGSTG*RPSSPA
Trigger: AGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTC...GTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CATCCTAACAAAGTCCAAAAGGGAGAGCACGGCAAGGGACGTGGGACGCACACGCCCAGCCAGTCAGCCTaGTCATCCCTGGGGAGACGG +
Preference number: 4 (lower is better)
Translates to: HPNKVQKGEHGKGRGTHTPSQSA*SSLGRR
Trigger: CCGTCTCCCCAGGGATGATCAGGCTGACTGGCTGGG...CGTGTGCGTCCCACGTCCCTTGCCGTGCTCTCCCTTTTGGACTTTGTTAGGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR TCA 90 bp AGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGCGAGCCTCCGTCTTATaGAAAAGCCCCCAAGCTTGT +
Preference number: 4 (lower is better)
Translates to: SLLGVGQAGPCQDTCHSGRASVL*KSPQAC
Trigger: ACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCG...CCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CAGGCCACTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACCAGTTCCCCAGAAGCTaGATAGCATGCATGACGACA +
Preference number: 4 (lower is better)
Translates to: QATASVLGGAQVHGGRRHQFPRS*IACMTT
Trigger: TGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTG...GTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAGTGGCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGTTGAGTTCAAAGACTaGCGGGACAGTTGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: RGRAGWAMPGYLPLWVRLVEFKD*RDSCAG
Trigger: CCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAAC...CAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp ATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCACCAGCTGCTCCTGGCTaGTCAGGTTGCCGAGGCCTC +
Preference number: 4 (lower is better)
Translates to: MPGYLPLWVRLEAARDSSPAAPG*SGCRGL
Trigger: GAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGG...TGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGATGGCTTTGGACTGCTaGTGGGCAGATCCATCTGGG +
Preference number: 4 (lower is better)
Translates to: KSPRGRAGWAMPGYLPLWMALDC*WADPSG
Trigger: CCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCAT...CCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGTGCTCAGCCAGGTTTaGAATCAGCCTTCGTCGGAA +
Preference number: 4 (lower is better)
Translates to: RGRAGWAMPGYLPLWVRLVLSQV*NQPSSE
Trigger: TTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCAC...CAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGTCCCACTGCTGTTCTaGAAGGCCAGGACTGACATC +
Preference number: 4 (lower is better)
Translates to: GSLLGVGQAGPCQDTCHSVPLLF*KARTDI
Trigger: GATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGAC...AGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGAGCTTCTTGTCCCACTaGTGTTCTGCAAGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: RGRAGWAMPGYLPLWVRLSFLSH*CSARPG
Trigger: TCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCT...CAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp AGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGAGACAGGCCACAATGTaGGTGGACATGATAGCGCAG +
Preference number: 4 (lower is better)
Translates to: SLLGVGQAGPCQDTCHSGRQATM*VDMIAQ
Trigger: CTGCGCTATCATGTCCACCCACATTGTGGCCTGTCT...CCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCTGCTCACCAGCTGCTCCTaGCTGATCAGGTTGCCGAGG +
Preference number: 4 (lower is better)
Translates to: HESQMALALSALRRPLRLLTSCS*LIRLPR
Trigger: CCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAG...CAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGGGACCGCTGAAGTTGTaGACAAAGATGGCAGCAGAG +
Preference number: 4 (lower is better)
Translates to: GVGQAGPCQDTCHSGSDWGPLKL*TKMAAE
Trigger: CTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCC...CCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCATCACGAGACAGTATGTaGCACTCTCAGCGTACACGG +
Preference number: 4 (lower is better)
Translates to: LLGVGQAGPCQDTCHSGSSRDSM*HSQRTR
Trigger: CCGTGTACGCTGAGAGTGCCACATACTGTCTCGTGA...TGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGTCACGAGACAGTATGTaGCACTCTCAGCGTACACGG +
Preference number: 4 (lower is better)
Translates to: GVGQAGPCQDTCHSGSDWSRDSM*HSQRTR
Trigger: CCGTGTACGCTGAGAGTGCCACATACTGTCTCGTGA...CCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp TCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCATCTCAGTTGCAGCCTTaGCCATCTCGAGTTGACCCT +
Preference number: 4 (lower is better)
Translates to: SWKSPRGRAGWAMPGYLPSQLQP*PSRVDP
Trigger: AGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAGA...TGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp AGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTCGAGCCTCCGTCTTATaGAAAAGCCCCCAAGCTTGT +
Preference number: 4 (lower is better)
Translates to: RAGWAMPGYLPLWVRLEARASVL*KSPQAC
Trigger: ACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCG...AGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp AAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTTGAGTTCAAAGACTaGCGGGACAGTTGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: KSPRGRAGWAMPGYLPLWVEFKD*RDSCAG
Trigger: CCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAAC...CCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp GGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGCTGCAAGGCCAGGACTaGCATCTTCCTGGTCATCTT +
Preference number: 4 (lower is better)
Translates to: GRAGWAMPGYLPLWVRLELQGQD*HLPGHL
Trigger: AAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAG...CTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACGTGTCTTCACTGGTGGCAAACATaGCCTTATGGACGTCTCGCT +
Preference number: 4 (lower is better)
Translates to: LRLCWEERRSTGAEGTCLHWWQT*PYGRLA
Trigger: AGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTG...AAGACACGTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGCCTCTTGGACTCTGCTaGTGCTCAGTACATTCTCAG +
Preference number: 4 (lower is better)
Translates to: RGRAGWAMPGYLPLWVRLPLGLC*CSVHSQ
Trigger: CTGAGAATGTACTGAGCAGCAGCAGAGTCCAAGAGG...CAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGCCTCTTGGACTCTGCTaGTGCTCAGTACATTCTCAG +
Preference number: 4 (lower is better)
Translates to: GVGQAGPCQDTCHSGSDWPLGLC*CSVHSQ
Trigger: CTGAGAATGTACTGAGCAGCAGCAGAGTCCAAGAGG...CCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACATGGCTTTGGACTGCTaGTGGGCAGATCCATCTGGG +
Preference number: 4 (lower is better)
Translates to: VSSWKSPRGRAGWAMPGYMALDC*WADPSG
Trigger: CCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCAT...GTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp TCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCATGGATGGCTTTGGACTaGTGCTGGGCAGATCCATCT +
Preference number: 4 (lower is better)
Translates to: SWKSPRGRAGWAMPGYLPWMALD*CWADPS
Trigger: AGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCA...TGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGTGGATGGCTTTGGACTaGTGCTGGGCAGATCCATCT +
Preference number: 4 (lower is better)
Translates to: GRAGWAMPGYLPLWVRLEWMALD*CWADPS
Trigger: AGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCA...CTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGAAGATCTCCAGGAACTaGTGCTGTCGGAGGAGTTCA +
Preference number: 4 (lower is better)
Translates to: SLLGVGQAGPCQDTCHSGKISRN*CCRRSS
Trigger: TGAACTCCTCCGACAGCAGCAGTTCCTGGAGATCTT...CCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGGCGGTGAAGAGAATGTaGTCAGCCAGGTTTGCAATC +
Preference number: 4 (lower is better)
Translates to: GVGQAGPCQDTCHSGSDWAVKRM*SARFAI
Trigger: GATTGCAAACCTGGCTGAGCACATTCTCTTCACCGC...CCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGCGGTGAAGAGAATGTaGTCAGCCAGGTTTGCAATC +
Preference number: 4 (lower is better)
Translates to: RGRAGWAMPGYLPLWVRLAVKRM*SARFAI
Trigger: GATTGCAAACCTGGCTGAGCACATTCTCTTCACCGC...CAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTAGCTTCTTGTCCCACTaGTGTTCTGCAAGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: RAGWAMPGYLPLWVRLEASFLSH*CSARPG
Trigger: TCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCT...AGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGTGATGAATTGCTGGTaGTCCTTGGACTGGCTCACC +
Preference number: 4 (lower is better)
Translates to: RAGWAMPGYLPLWVRLEAVMNCW*SLDWLT
Trigger: GGTGAGCCAGTCCAAGGAGCACCAGCAATTCATCAC...AGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CAGGCCACTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACAGAAAGGTGATGAATTaGTGGTGCTCCTTGGACTGG +
Preference number: 4 (lower is better)
Translates to: QATASVLGGAQVHGGRRHRKVMN*WCSLDW
Trigger: CCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCT...GTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAGTGGCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp TGGGGAGCAGCGCTCATTTGCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCTGGGCAGATCCATCTaGGTTCAACTCCGCAGCCAC +
Preference number: 4 (lower is better)
Translates to: WGAALICRADKQGSNTHWLGRSI*VQLRSH
Trigger: GTGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAG...CCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGCAAATGAGCGCTGCTCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235957.2
ENSMUST00000236859.2
CDS-3UTR CCA 90 bp TCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCGAGATAGGGAAGGTAGCACAGGCTaGCGGCCTTCCTCACCAGCT +
Preference number: 4 (lower is better)
Translates to: SGSDWRLQGTHQLLARDREGSTG*RPSSPA
Trigger: AGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTC...CCTATCTCGAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGTCACGAGACAGTATGTaGCACTCTCAGCGTACACGG +
Preference number: 4 (lower is better)
Translates to: GRAGWAMPGYLPLWVRLESRDSM*HSQRTR
Trigger: CCGTGTACGCTGAGAGTGCCACATACTGTCTCGTGA...CTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CAGGCCACTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACAAGGCTGTATTCCGATaGACTGGGCAGATAAGAAAC +
Preference number: 4 (lower is better)
Translates to: QATASVLGGAQVHGGRRHKAVFR*TGQIRN
Trigger: GTTTCTTATCTGCCCAGTTCATCGGAATACAGCCTT...GTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAGTGGCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCGTCTCAGTTGCAGCCTTaGCCATCTCGAGTTGACCCT +
Preference number: 4 (lower is better)
Translates to: LPLWVRLEAARDSSAPRSSQLQP*PSRVDP
Trigger: AGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAGA...CGAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp GTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCAGTTCCCCAGAAGCTaGATAGCATGCATGACGACA +
Preference number: 4 (lower is better)
Translates to: VGQAGPCQDTCHSGSDWRQFPRS*IACMTT
Trigger: TGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTG...CCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CAGGCCACTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACCATTGCTGTAGAAGTTaGGTTCAAAGACTGACGGGA +
Preference number: 4 (lower is better)
Translates to: QATASVLGGAQVHGGRRHHCCRS*VQRLTG
Trigger: TCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATG...GTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAGTGGCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCCTGCAAGGCCAGGACTaGCATCTTCCTGGTCATCTT +
Preference number: 4 (lower is better)
Translates to: PATLGQTGGCKGLISSSLLQGQD*HLPGHL
Trigger: AAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAG...GAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAACTGCAAGGCCAGGACTaGCATCTTCCTGGTCATCTT +
Preference number: 4 (lower is better)
Translates to: QAGPCQDTCHSGSDWRLQLQGQD*HLPGHL
Trigger: AAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAG...TTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTTGCCTCTTGGACTCTaGTGCTGCTCAGTACATTCT +
Preference number: 4 (lower is better)
Translates to: SLLGVGQAGPCQDTCHSGLPLGL*CCSVHS
Trigger: AGAATGTACTGAGCAGCAGCAGAGTCCAAGAGGCAA...CCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCTGGATGGCTTTGGACTaGTGCTGGGCAGATCCATCT +
Preference number: 4 (lower is better)
Translates to: PATLGQTGGCKGLISSSLWMALD*CWADPS
Trigger: AGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCA...GAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCGCCTTCCTCACCAGCTaGTCCTGGCTGATCAGGTTG +
Preference number: 4 (lower is better)
Translates to: RIPATLGQTGGCKGLISSAFLTS*SWLIRL
Trigger: CAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGC...GGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGCTGGTCATCTTGCTCTaGCACTGTGAGAATGCCATA +
Preference number: 4 (lower is better)
Translates to: SLLGVGQAGPCQDTCHSGLVILL*HCENAI
Trigger: TATGGCATTCTCACAGTGGCAGAGCAAGATGACCAG...CCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCTTCCTGGTCATCTTaGTCTGCCACTGTGAGAATG +
Preference number: 4 (lower is better)
Translates to: SLLGVGQAGPCQDTCHSGSSWSS*SATVRM
Trigger: CATTCTCACAGTGGCAGAGCAAGATGACCAGGAAGA...CCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CACCTGCCACTCAGCTGGGTCACTGTGCATGCTACACAGGCTGCACAGTGCGCCAGCTTCTTGTCCCACTaGTGTTCTGCAAGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: HLPLSWVTVHATQAAQCASFLSH*CSARPG
Trigger: TCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCT...GGCGCACTGTGCAGCCTGTGTAGCATGCACAGTGACCCAGCTGAGTGGCAGGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR GCA 90 bp CTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAAGAAAGGTGATGAATTaGTGGTGCTCCTTGGACTGG +
Preference number: 4 (lower is better)
Translates to: LLGVGQAGPCQDTCHSGSRKVMN*WCSLDW
Trigger: CCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCT...TGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp AGGCACGTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCATTTTCACCTTCTGGATaGCTTTGGACTGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: RHVSSWKSPRGRAGWAMPFSPSG*LWTAAG
Trigger: CCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAA...TGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACACGTGCCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGTTTTCACCTTCTGGATaGCTTTGGACTGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: GRAGWAMPGYLPLWVRLEFSPSG*LWTAAG
Trigger: CCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAA...CTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGTTCCTTTTCACCTTCTaGATGGCTTTGGACTGCTGC +
Preference number: 4 (lower is better)
Translates to: GVGQAGPCQDTCHSGSDWFLFTF*MALDCC
Trigger: GCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAA...CCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CAGGCCACTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACGTGAGAATGCCATACTaGATGAACTTGCCAACTGTC +
Preference number: 4 (lower is better)
Translates to: QATASVLGGAQVHGGRRHVRMPY*MNLPTV
Trigger: GACAGTTGGCAAGTTCATCCAGTATGGCATTCTCAC...GTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAGTGGCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp TCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCAAAGGTGATGAATTGCTaGTGCTCCTTGGACTGGCTC +
Preference number: 4 (lower is better)
Translates to: SWKSPRGRAGWAMPGYLPKVMNC*CSLDWL
Trigger: GAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTT...TGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp GGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTATGGGATACTGGGGTTaGAAAACCTTTCCCAGCTCT +
Preference number: 4 (lower is better)
Translates to: GSLLGVGQAGPCQDTCHSMGYWG*KTFPSS
Trigger: AGAGCTGGGAAAGGTTTTTCAACCCCAGTATCCCAT...AGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCATCCAGAAGAAGCTGTTaGAGAGCTTTAGTAACACCC +
Preference number: 4 (lower is better)
Translates to: LLGVGQAGPCQDTCHSGSSRRSC*RALVTP
Trigger: GGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGA...TGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp ATTTGGAAAGCAAATGCCCCTCCCCCTCTGGCTTACTTGGCTTGGCCTCACTTACCAGCTGCTCCTGGCTaGTCAGGTTGCCGAGGCCTC +
Preference number: 4 (lower is better)
Translates to: IWKANAPPPLAYLAWPHLPAAPG*SGCRGL
Trigger: GAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGG...TAAGTGAGGCCAAGCCAAGTAAGCCAGAGGGGGAGGGGCATTTGCTTTCCAAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS-3UTR GCA 90 bp CAGGCCACTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACCTTCCATTTCAGTGTTaGAGATCTGAAGAAGGTAGG +
Preference number: 4 (lower is better)
Translates to: QATASVLGGAQVHGGRRHLPFQC*RSEEGR
Trigger: CCTACCTTCTTCAGATCTGCAACACTGAAATGGAAG...GTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAGTGGCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp TCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCATTGCCTCTTGGACTCTaGTGCTGCTCAGTACATTCT +
Preference number: 4 (lower is better)
Translates to: SWKSPRGRAGWAMPGYLPLPLGL*CCSVHS
Trigger: AGAATGTACTGAGCAGCAGCAGAGTCCAAGAGGCAA...TGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGAGTGACCTTCGATTATaGGATCATACGAGATGCCCA +
Preference number: 4 (lower is better)
Translates to: RGRAGWAMPGYLPLWVRLSDLRL*DHTRCP
Trigger: TGGGCATCTCGTATGATCGCATAATCGAAGGTCACT...CAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGCAAGGAAAATGGCTGTaGAAAATCCACTCGGACGTA +
Preference number: 4 (lower is better)
Translates to: RGRAGWAMPGYLPLWVRLQGKWL*KIHSDV
Trigger: TACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTG...CAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGCAAGGAAAATGGCTGTaGAAAATCCACTCGGACGTA +
Preference number: 4 (lower is better)
Translates to: SLLGVGQAGPCQDTCHSGQGKWL*KIHSDV
Trigger: TACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTG...CCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGCGGTGAAGAGAATGTaGTCAGCCAGGTTTGCAATC +
Preference number: 4 (lower is better)
Translates to: QAGPCQDTCHSGSDWRLQAVKRM*SARFAI
Trigger: GATTGCAAACCTGGCTGAGCACATTCTCTTCACCGC...TTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGCTGGTCATCTTGCTCTaGCACTGTGAGAATGCCATA +
Preference number: 4 (lower is better)
Translates to: GRAGWAMPGYLPLWVRLELVILL*HCENAI
Trigger: TATGGCATTCTCACAGTGGCAGAGCAAGATGACCAG...CTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GATCATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTGTCCCACTGCTGTTCTaGAAGGCCAGGACTGACATC +
Preference number: 4 (lower is better)
Translates to: DHESQMALALSALRRPLRVPLLF*KARTDI
Trigger: GATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGAC...ACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp ATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCTGTGTTGGTGATGAATTGCTGGTaGTCCTTGGACTGGCTCACC +
Preference number: 4 (lower is better)
Translates to: ITDGTGPECSAQATASVLVMNCW*SLDWLT
Trigger: GGTGAGCCAGTCCAAGGAGCACCAGCAATTCATCAC...CAACACAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCTTTTCACCTTCTGGATaGCTTTGGACTGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: PATLGQTGGCKGLISSSLFSPSG*LWTAAG
Trigger: CCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAA...GAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACGTGTCTTTTCCTTTTCACCTTCTaGATGGCTTTGGACTGCTGC +
Preference number: 4 (lower is better)
Translates to: LRLCWEERRSTGAEGTCLFLFTF*MALDCC
Trigger: GCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAA...AAGACACGTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp ATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCTGTGTTGAGACAGGCCACAATGTaGGTGGACATGATAGCGCAG +
Preference number: 4 (lower is better)
Translates to: ITDGTGPECSAQATASVLRQATM*VDMIAQ
Trigger: CTGCGCTATCATGTCCACCCACATTGTGGCCTGTCT...CAACACAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGTCTTTCCTGCTCGTGTaGGTGATTGTGACACAGTTC +
Preference number: 4 (lower is better)
Translates to: VGQAGPCQDTCHSGSDWRSFLLV*VIVTQF
Trigger: GAACTGTGTCACAATCACCCACACGAGCAGGAAAGA...CCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp AAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGTCTTTCCTGCTCGTGTaGGTGATTGTGACACAGTTC +
Preference number: 4 (lower is better)
Translates to: KSPRGRAGWAMPGYLPLWSFLLV*VIVTQF
Trigger: GAACTGTGTCACAATCACCCACACGAGCAGGAAAGA...CCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp AGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTTCTTTCCTGCTCGTGTaGGTGATTGTGACACAGTTC +
Preference number: 4 (lower is better)
Translates to: RAGWAMPGYLPLWVRLEASFLLV*VIVTQF
Trigger: GAACTGTGTCACAATCACCCACACGAGCAGGAAAGA...AGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGTGAGAATGCCATACTaGATGAACTTGCCAACTGTC +
Preference number: 4 (lower is better)
Translates to: LLGVGQAGPCQDTCHSGSVRMPY*MNLPTV
Trigger: GACAGTTGGCAAGTTCATCCAGTATGGCATTCTCAC...TGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp TCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCAAGTTGTGGACAAAGATaGCAGCAGAGCTGTAGGCTT +
Preference number: 4 (lower is better)
Translates to: SWKSPRGRAGWAMPGYLPSCGQR*QQSCRL
Trigger: AAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACT...TGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACGTGTCTTTCCAGAAGAAGCTGTTaGAGAGCTTTAGTAACACCC +
Preference number: 4 (lower is better)
Translates to: LRLCWEERRSTGAEGTCLSRRSC*RALVTP
Trigger: GGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGA...AAGACACGTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp AGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTTCCAGAAGAAGCTGTTaGAGAGCTTTAGTAACACCC +
Preference number: 4 (lower is better)
Translates to: RAGWAMPGYLPLWVRLEASRRSC*RALVTP
Trigger: GGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGA...AGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATTCTCAGTTGCAGCCTTaGCCATCTCGAGTTGACCCT +
Preference number: 4 (lower is better)
Translates to: PCQDTCHSGSDWRLQGTHSQLQP*PSRVDP
Trigger: AGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAGA...ATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGCAGATACAGGTTTCTaGCTCTGGCCTTCTAAATAT +
Preference number: 4 (lower is better)
Translates to: LLGVGQAGPCQDTCHSGSADTGF*LWPSKY
Trigger: ATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGC...TGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp GTCCTTGCCTCCAACCACCTGCCACTCAGCTGGGTCACTGTGCATGCTACACAGGTTGAGTTCAAAGACTaGCGGGACAGTTGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: VLASNHLPLSWVTVHATQVEFKD*RDSCAG
Trigger: CCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAAC...CTGTGTAGCATGCACAGTGACCCAGCTGAGTGGCAGGTGGTTGGAGGCAAGGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR TCA 90 bp TCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCGAGATAGGGTTGAGTTCAAAGACTaGCGGGACAGTTGTGCTGGG +
Preference number: 4 (lower is better)
Translates to: SGSDWRLQGTHQLLARDRVEFKD*RDSCAG
Trigger: CCCAGCACAACTGTCCCGTCAGTCTTTGAACTCAAC...CCTATCTCGAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp GTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCATTGCTGTAGAAGTTaGGTTCAAAGACTGACGGGA +
Preference number: 4 (lower is better)
Translates to: VGQAGPCQDTCHSGSDWRHCCRS*VQRLTG
Trigger: TCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATG...CCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp TCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACATTGCTGTAGAAGTTaGGTTCAAAGACTGACGGGA +
Preference number: 4 (lower is better)
Translates to: SWKSPRGRAGWAMPGYLPHCCRS*VQRLTG
Trigger: TCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATG...TGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGCCATACACTAGCCACAGCACAGCACCCAGTGAGTGAGCAGTGTCTGGAACCCATGGCTTTGGACTGCTaGTGGGCAGATCCATCTGGG +
Preference number: 4 (lower is better)
Translates to: SHTLATAQHPVSEQCLEPMALDC*WADPSG
Trigger: CCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCAT...GGGTTCCAGACACTGCTCACTCACTGGGTGCTGTGCTGTGGCTAGTGTATGGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR GCA 90 bp GATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCTGGATGGCTTTGGACTaGTGCTGGGCAGATCCATCT +
Preference number: 4 (lower is better)
Translates to: DTCHSGSDWRLQGTHQLLWMALD*CWADPS
Trigger: AGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCA...GAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp TTTGCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCAGACAGATCAGAGGAGCCTTCCTCACCAGCTaGTCCTGGCTGATCAGGTTG +
Preference number: 4 (lower is better)
Translates to: FAELTSRAATPTGRQIRGAFLTS*SWLIRL
Trigger: CAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGC...TCCTCTGATCTGTCTGCCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGCAAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235957.2
ENSMUST00000236859.2
CDS-3UTR GCA 90 bp GTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACTCTTCCTGGTCATCTTaGTCTGCCACTGTGAGAATG +
Preference number: 4 (lower is better)
Translates to: VSSWKSPRGRAGWAMPGYSSWSS*SATVRM
Trigger: CATTCTCACAGTGGCAGAGCAAGATGACCAGGAAGA...GTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGAGGTAGGAAAGTACTaGTCAGTTCTAGAACAGACA +
Preference number: 4 (lower is better)
Translates to: LLGVGQAGPCQDTCHSGSEVGKY*SVLEQT
Trigger: TGTCTGTTCTAGAACTGAGCAGTACTTTCCTACCTC...TGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp ACGTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATCCTGGAGGATCTTCCTaGCTTTCCTTTTCACCTTCT +
Preference number: 4 (lower is better)
Translates to: TCLPGSLLGVGQAGPCQDPGGSS*LSFSPS
Trigger: AGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGG...ATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp ACGTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATAGTTGTGGACAAAGATaGCAGCAGAGCTGTAGGCTT +
Preference number: 4 (lower is better)
Translates to: TCLPGSLLGVGQAGPCQDSCGQR*QQSCRL
Trigger: AAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACT...ATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CAACCACCTGCCACTCAGCTGGGTCACTGTGCATGCTACACAGGCTGCACAGTGGGACCGCTGAAGTTGTaGACAAAGATGGCAGCAGAG +
Preference number: 4 (lower is better)
Translates to: QPPATQLGHCACYTGCTVGPLKL*TKMAAE
Trigger: CTCTGCTGCCATCTTTGTCCACAACTTCAGCGGTCC...CACTGTGCAGCCTGTGTAGCATGCACAGTGACCCAGCTGAGTGGCAGGTGGTTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR TCA 90 bp CCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCAAGGCTGTATTCCGATaGACTGGGCAGATAAGAAAC +
Preference number: 4 (lower is better)
Translates to: PATLGQTGGCKGLISSSLKAVFR*TGQIRN
Trigger: GTTTCTTATCTGCCCAGTTCATCGGAATACAGCCTT...GAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CTCCTGACTGCAGTGTCATCTGCTTTCAGGCAGCTACTCAGATACATCTTGAGTCCCAGCCAGTCAGCCTaGTCATCCCTGGGGAGACGG +
Preference number: 4 (lower is better)
Translates to: LLTAVSSAFRQLLRYILSPSQSA*SSLGRR
Trigger: CCGTCTCCCCAGGGATGATCAGGCTGACTGGCTGGG...ACTCAAGATGTATCTGAGTAGCTGCCTGAAAGCAGATGACACTGCAGTCAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR TCA 90 bp AGCCATACACTAGCCACAGCACAGCACCCAGTGAGTGAGCAGTGTCTGGAACCCCGAGCCTCCGTCTTATaGAAAAGCCCCCAAGCTTGT +
Preference number: 4 (lower is better)
Translates to: SHTLATAQHPVSEQCLEPRASVL*KSPQAC
Trigger: ACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCG...GGGTTCCAGACACTGCTCACTCACTGGGTGCTGTGCTGTGGCTAGTGTATGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR TCA 90 bp GATCATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCAGTTCCCCAGAAGCTaGATAGCATGCATGACGACA +
Preference number: 4 (lower is better)
Translates to: DHESQMALALSALRRPLRQFPRS*IACMTT
Trigger: TGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTG...ACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGGCACGTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCACTTCCATTTCAGTGTTaGAGATCTGAAGAAGGTAGG +
Preference number: 4 (lower is better)
Translates to: RHVSSWKSPRGRAGWAMPLPFQC*RSEEGR
Trigger: CCTACCTTCTTCAGATCTGCAACACTGAAATGGAAG...TGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACACGTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCCCTCTTGGACTCTGCTaGTGCTCAGTACATTCTCAG +
Preference number: 4 (lower is better)
Translates to: RIPATLGQTGGCKGLISSPLGLC*CSVHSQ
Trigger: CTGAGAATGTACTGAGCAGCAGCAGAGTCCAAGAGG...GGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCAAGATCTCCAGGAACTaGTGCTGTCGGAGGAGTTCA +
Preference number: 4 (lower is better)
Translates to: RIPATLGQTGGCKGLISSKISRN*CCRRSS
Trigger: TGAACTCCTCCGACAGCAGCAGTTCCTGGAGATCTT...GGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp TCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCGAGATAGGAAGATCTCCAGGAACTaGTGCTGTCGGAGGAGTTCA +
Preference number: 4 (lower is better)
Translates to: SGSDWRLQGTHQLLARDRKISRN*CCRRSS
Trigger: TGAACTCCTCCGACAGCAGCAGTTCCTGGAGATCTT...CCTATCTCGAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACAGTGACCTTCGATTATaGGATCATACGAGATGCCCA +
Preference number: 4 (lower is better)
Translates to: VSSWKSPRGRAGWAMPGYSDLRL*DHTRCP
Trigger: TGGGCATCTCGTATGATCGCATAATCGAAGGTCACT...GTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp TCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGAGTGACCTTCGATTATaGGATCATACGAGATGCCCA +
Preference number: 4 (lower is better)
Translates to: SSWKSPRGRAGWAMPGYLSDLRL*DHTRCP
Trigger: TGGGCATCTCGTATGATCGCATAATCGAAGGTCACT...CAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGCCATACACTAGCCACAGCACAGCACCCAGTGAGTGAGCAGTGTCTGGAACCCGTGCTCAGCCAGGTTTaGAATCAGCCTTCGTCGGAA +
Preference number: 4 (lower is better)
Translates to: SHTLATAQHPVSEQCLEPVLSQV*NQPSSE
Trigger: TTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCAC...GGGTTCCAGACACTGCTCACTCACTGGGTGCTGTGCTGTGGCTAGTGTATGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR GCA 90 bp CCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATGCGGTGAAGAGAATGTaGTCAGCCAGGTTTGCAATC +
Preference number: 4 (lower is better)
Translates to: PCQDTCHSGSDWRLQGTHAVKRM*SARFAI
Trigger: GATTGCAAACCTGGCTGAGCACATTCTCTTCACCGC...ATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTCCTCTTATTCAGGACTaGATAGATGCTGCAAGCTAT +
Preference number: 4 (lower is better)
Translates to: GSLLGVGQAGPCQDTCHSPLIQD*IDAASY
Trigger: ATAGCTTGCAGCATCTATGCAGTCCTGAATAAGAGG...AGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGCCTCTTATTCAGGACTaGATAGATGCTGCAAGCTAT +
Preference number: 4 (lower is better)
Translates to: GRAGWAMPGYLPLWVRLEPLIQD*IDAASY
Trigger: ATAGCTTGCAGCATCTATGCAGTCCTGAATAAGAGG...CTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCCTCTTATTCAGGACTaGATAGATGCTGCAAGCTAT +
Preference number: 4 (lower is better)
Translates to: VGQAGPCQDTCHSGSDWRPLIQD*IDAASY
Trigger: ATAGCTTGCAGCATCTATGCAGTCCTGAATAAGAGG...CCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCTGTCTTCCTGGTCATCTTaGTCTGCCACTGTGAGAATG +
Preference number: 4 (lower is better)
Translates to: HESQMALALSALRRPLRLSSWSS*SATVRM
Trigger: CATTCTCACAGTGGCAGAGCAAGATGACCAGGAAGA...CAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGGCACGTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGAGGTAGGAAAGTACTaGTCAGTTCTAGAACAGACA +
Preference number: 4 (lower is better)
Translates to: RHVSSWKSPRGRAGWAMPEVGKY*SVLEQT
Trigger: TGTCTGTTCTAGAACTGAGCAGTACTTTCCTACCTC...TGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACACGTGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCATGTATTCCGATGAACTaGGCAGATAAGAAACGTCTA +
Preference number: 4 (lower is better)
Translates to: LLGVGQAGPCQDTCHSGSCIPMN*ADKKRL
Trigger: TAGACGTTTCTTATCTGCCCAGTTCATCGGAATACA...TGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATTCAGCAATTGCCTCTTaGACTCTGCTGCTGCTCAGT +
Preference number: 4 (lower is better)
Translates to: PCQDTCHSGSDWRLQGTHSAIAS*TLLLLS
Trigger: ACTGAGCAGCAGCAGAGTCCAAGAGGCAATTGCTGA...ATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GGGTCACTGTGCATGCTACACAGGCTGCACAGTGCGCCATCTGGGTACAAGCCATTTTCACCTTCTGGATaGCTTTGGACTGCTGCTGGG +
Preference number: 4 (lower is better)
Translates to: GSLCMLHRLHSAPSGYKPFSPSG*LWTAAG
Trigger: CCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAA...TGGCTTGTACCCAGATGGCGCACTGTGCAGCCTGTGTAGCATGCACAGTGACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR CCA 90 bp TCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCGAGATAGGAAGGTGATGAATTGCTaGTGCTCCTTGGACTGGCTC +
Preference number: 4 (lower is better)
Translates to: SGSDWRLQGTHQLLARDRKVMNC*CSLDWL
Trigger: GAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTT...CCTATCTCGAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
3UTR CAA 72 bp CTTCATGAGGAAGGCACTGCAGCCAGCTTCCTGTGCTaGCTCTCTCCAGTGAGGAAAGATACCCGAGCACAC +
Preference number: 4 (lower is better)
Translates to: LHEEGTAASFLC*LSPVRKDTRAH
Trigger: GTGTGCTCGGGTATCTTTCCTCACTGGAGAGAGCAAGCACAGGAAGCTGGCTGCAGTGCCTTCCTCATGAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS-3UTR TCA 90 bp ATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCTGTGTTGTCCAGAAGAAGCTGTTaGAGAGCTTTAGTAACACCC +
Preference number: 4 (lower is better)
Translates to: ITDGTGPECSAQATASVLSRRSC*RALVTP
Trigger: GGGTGTTACTAAAGCTCTTCAACAGCTTCTTCTGGA...CAACACAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp TCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGGCAGATACAGGTTTCTaGCTCTGGCCTTCTAAATAT +
Preference number: 4 (lower is better)
Translates to: SSWKSPRGRAGWAMPGYLADTGF*LWPSKY
Trigger: ATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGC...CAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp CTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCGGCAGATACAGGTTTCTaGCTCTGGCCTTCTAAATAT +
Preference number: 4 (lower is better)
Translates to: LPLWVRLEAARDSSAPRSADTGF*LWPSKY
Trigger: ATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGC...CGAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp GTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACGCAGATACAGGTTTCTaGCTCTGGCCTTCTAAATAT +
Preference number: 4 (lower is better)
Translates to: VSSWKSPRGRAGWAMPGYADTGF*LWPSKY
Trigger: ATATTTAGAAGGCCAGAGTCAGAAACCTGTATCTGC...GTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR TCA 90 bp GTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGTTACTGGATAGGTCTTaGTGTTCATCAGCAACATCA +
Preference number: 4 (lower is better)
Translates to: VGQAGPCQDTCHSGSDWRLLDRS*CSSATS
Trigger: TGATGTTGCTGATGAACATCAAGACCTATCCAGTAA...CCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GATCATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTTTGCCTCTTGGACTCTaGTGCTGCTCAGTACATTCT +
Preference number: 4 (lower is better)
Translates to: DHESQMALALSALRRPLRLPLGL*CCSVHS
Trigger: AGAATGTACTGAGCAGCAGCAGAGTCCAAGAGGCAA...ACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp TCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCGAGATAGGTTGCCTCTTGGACTCTaGTGCTGCTCAGTACATTCT +
Preference number: 4 (lower is better)
Translates to: SGSDWRLQGTHQLLARDRLPLGL*CCSVHS
Trigger: AGAATGTACTGAGCAGCAGCAGAGTCCAAGAGGCAA...CCTATCTCGAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp TACCTGTGCAGTTTCTGCAGGTACTCAGACTCGGGAACTGGACCGCTGAAGTTGGTCCCACTGCTGTTCTaGAAGGCCAGGACTGACATC +
Preference number: 4 (lower is better)
Translates to: YLCSFCRYSDSGTGPLKLVPLLF*KARTDI
Trigger: GATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGAC...CAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR GCA 90 bp GGAGCAGCGCTCATTTGCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCAGGTGATAAGGTACCTGTaGAGTTTCTGCAGGTACTCA +
Preference number: 4 (lower is better)
Translates to: GAALICRADKQGSNTHWQVIRYL*SFCRYS
Trigger: TGAGTACCTGCAGAAACTGCACAGGTACCTTATCAC...CTGCCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGCAAATGAGCGCTGCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS-3UTR CCA 90 bp AAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGTGTATTCCGATGAACTaGGCAGATAAGAAACGTCTA +
Preference number: 4 (lower is better)
Translates to: KSPRGRAGWAMPGYLPLWCIPMN*ADKKRL
Trigger: TAGACGTTTCTTATCTGCCCAGTTCATCGGAATACA...CCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GATCATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCCTGGAGGATCTTCCTaGCTTTCCTTTTCACCTTCT +
Preference number: 4 (lower is better)
Translates to: DHESQMALALSALRRPLRPGGSS*LSFSPS
Trigger: AGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGG...ACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATGATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCCTGGAGGATCTTCCTaGCTTTCCTTTTCACCTTCT +
Preference number: 4 (lower is better)
Translates to: PCQDTCHSGSDWRLQGTHPGGSS*LSFSPS
Trigger: AGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGG...ATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GTCCTTGCCTCCAACCACCTGCCACTCAGCTGGGTCACTGTGCATGCTACACAGTCTTTCCTGCTCGTGTaGGTGATTGTGACACAGTTC +
Preference number: 4 (lower is better)
Translates to: VLASNHLPLSWVTVHATQSFLLV*VIVTQF
Trigger: GAACTGTGTCACAATCACCCACACGAGCAGGAAAGA...CTGTGTAGCATGCACAGTGACCCAGCTGAGTGGCAGGTGGTTGGAGGCAAGGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR CCA 90 bp AGCCATACACTAGCCACAGCACAGCACCCAGTGAGTGAGCAGTGTCTGGAACCCAAGGTGATGAATTGCTaGTGCTCCTTGGACTGGCTC +
Preference number: 4 (lower is better)
Translates to: SHTLATAQHPVSEQCLEPKVMNC*CSLDWL
Trigger: GAGCCAGTCCAAGGAGCACCAGCAATTCATCACCTT...GGGTTCCAGACACTGCTCACTCACTGGGTGCTGTGCTGTGGCTAGTGTATGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR TCA 90 bp GCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCAGACAGATCAGAGGAAGCAAGGCTGTATTCCGATaGACTGGGCAGATAAGAAAC +
Preference number: 4 (lower is better)
Translates to: AELTSRAATPTGRQIRGSKAVFR*TGQIRN
Trigger: GTTTCTTATCTGCCCAGTTCATCGGAATACAGCCTT...GCTTCCTCTGATCTGTCTGCCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235957.2
ENSMUST00000236859.2
CDS-3UTR TCA 90 bp ACAGCGTTCTTCACGAGACAGTATGTGGCACTCTCAGCGTACACGGCAACGTTCTCTCAGTTGCAGCCTTaGCCATCTCGAGTTGACCCT +
Preference number: 4 (lower is better)
Translates to: TAFFTRQYVALSAYTATFSQLQP*PSRVDP
Trigger: AGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAGA...GAACGTTGCCGTGTACGCTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR GCA 90 bp CATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCTGCTTCCATTTCAGTGTTaGAGATCTGAAGAAGGTAGG +
Preference number: 4 (lower is better)
Translates to: HESQMALALSALRRPLRLLPFQC*RSEEGR
Trigger: CCTACCTTCTTCAGATCTGCAACACTGAAATGGAAG...CAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GGAGCAGCGCTCATTTGCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCAGCTTCCATTTCAGTGTTaGAGATCTGAAGAAGGTAGG +
Preference number: 4 (lower is better)
Translates to: GAALICRADKQGSNTHWQLPFQC*RSEEGR
Trigger: CCTACCTTCTTCAGATCTGCAACACTGAAATGGAAG...CTGCCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGCAAATGAGCGCTGCTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235957.2
ENSMUST00000236859.2
CDS-3UTR GCA 90 bp ATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCACTGGTCATCTTGCTCTaGCACTGTGAGAATGCCATA +
Preference number: 4 (lower is better)
Translates to: MPGYLPLWVRLEAARDSSLVILL*HCENAI
Trigger: TATGGCATTCTCACAGTGGCAGAGCAAGATGACCAG...TGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp ACAGCGTTCTTCACGAGACAGTATGTGGCACTCTCAGCGTACACGGCAACGTTCAGCTTCTTGTCCCACTaGTGTTCTGCAAGGCCAGGA +
Preference number: 4 (lower is better)
Translates to: TAFFTRQYVALSAYTATFSFLSH*CSARPG
Trigger: TCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCT...GAACGTTGCCGTGTACGCTGAGAGTGCCACATACTGTCTCGTGAAGAACGCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR GCA 90 bp GATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGTGATAAGGTACCTGTaGAGTTTCTGCAGGTACTCA +
Preference number: 4 (lower is better)
Translates to: DTCHSGSDWRLQGTHQLLVIRYL*SFCRYS
Trigger: TGAGTACCTGCAGAAACTGCACAGGTACCTTATCAC...GAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATGTGATAAGGTACCTGTaGAGTTTCTGCAGGTACTCA +
Preference number: 4 (lower is better)
Translates to: PCQDTCHSGSDWRLQGTHVIRYL*SFCRYS
Trigger: TGAGTACCTGCAGAAACTGCACAGGTACCTTATCAC...ATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp AGCCATACACTAGCCACAGCACAGCACCCAGTGAGTGAGCAGTGTCTGGAACCCCCTGGAGGATCTTCCTaGCTTTCCTTTTCACCTTCT +
Preference number: 4 (lower is better)
Translates to: SHTLATAQHPVSEQCLEPPGGSS*LSFSPS
Trigger: AGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGG...GGGTTCCAGACACTGCTCACTCACTGGGTGCTGTGCTGTGGCTAGTGTATGGCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR CCA 90 bp TACCTGTGCAGTTTCTGCAGGTACTCAGACTCGGGAACTGGACCGCTGAAGTTGAGACAGGCCACAATGTaGGTGGACATGATAGCGCAG +
Preference number: 4 (lower is better)
Translates to: YLCSFCRYSDSGTGPLKLRQATM*VDMIAQ
Trigger: CTGCGCTATCATGTCCACCCACATTGTGGCCTGTCT...CAACTTCAGCGGTCCAGTTCCCGAGTCTGAGTACCTGCAGAAACTGCACAGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR CCA 90 bp GCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCAGACAGATCAGAGGAAGCGTGAGAATGCCATACTaGATGAACTTGCCAACTGTC +
Preference number: 4 (lower is better)
Translates to: AELTSRAATPTGRQIRGSVRMPY*MNLPTV
Trigger: GACAGTTGGCAAGTTCATCCAGTATGGCATTCTCAC...GCTTCCTCTGATCTGTCTGCCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235957.2
ENSMUST00000236859.2
CDS-3UTR CCA 90 bp ATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAAGTTGTGGACAAAGATaGCAGCAGAGCTGTAGGCTT +
Preference number: 4 (lower is better)
Translates to: MPGYLPLWVRLEAARDSSSCGQR*QQSCRL
Trigger: AAGCCTACAGCTCTGCTGCCATCTTTGTCCACAACT...TGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
3UTR CAA 72 bp GAGCAGGCATCCCCATTGCCAAATGTTTCATCAAGGTaGAAGGAACGTGAGCCCATAAAGTCAGGGCTGGGC +
Preference number: 4 (lower is better)
Translates to: EQASPLPNVSSR*KEREPIKSGLG
Trigger: GCCCAGCCCTGACTTTATGGGCTCACGTTCCTTCAACCTTGATGAAACATTTGGCAATGGGGATGCCTGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR TCA 90 bp TGGGGAGCAGCGCTCATTTGCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGTTACTGGATAGGTCTTaGTGTTCATCAGCAACATCA +
Preference number: 4 (lower is better)
Translates to: WGAALICRADKQGSNTHWLLDRS*CSSATS
Trigger: TGATGTTGCTGATGAACATCAAGACCTATCCAGTAA...CCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGCAAATGAGCGCTGCTCCCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235957.2
ENSMUST00000236859.2
CDS-3UTR TCA 90 bp AGCCATACACTAGCCACAGCACAGCACCCAGTGAGTGAGCAGTGTCTGGAACCCCATTGCTGTAGAAGTTaGGTTCAAAGACTGACGGGA +
Preference number: 4 (lower is better)
Translates to: SHTLATAQHPVSEQCLEPHCCRS*VQRLTG
Trigger: TCCCGTCAGTCTTTGAACTCAACTTCTACAGCAATG...GGGTTCCAGACACTGCTCACTCACTGGGTGCTGTGCTGTGGCTAGTGTATGGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR GCA 90 bp GATCATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCCTCTTATTCAGGACTaGATAGATGCTGCAAGCTAT +
Preference number: 4 (lower is better)
Translates to: DHESQMALALSALRRPLRPLIQD*IDAASY
Trigger: ATAGCTTGCAGCATCTATGCAGTCCTGAATAAGAGG...ACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATGATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp CCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATACAGACACTCGCTTTTaGTTGGTCTCTTTGAAAACC +
Preference number: 4 (lower is better)
Translates to: PCQDTCHSGSDWRLQGTHTDTRF*LVSLKT
Trigger: GGTTTTCAAAGAGACCAAGCAAAAGCGAGTGTCTGT...ATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp AGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCACAGACACTCGCTTTTaGTTGGTCTCTTTGAAAACC +
Preference number: 4 (lower is better)
Translates to: RIPATLGQTGGCKGLISSTDTRF*LVSLKT
Trigger: GGTTTTCAAAGAGACCAAGCAAAAGCGAGTGTCTGT...GGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp GTCCTTGCCTCCAACCACCTGCCACTCAGCTGGGTCACTGTGCATGCTACACAGGAGGTAGGAAAGTACTaGTCAGTTCTAGAACAGACA +
Preference number: 4 (lower is better)
Translates to: VLASNHLPLSWVTVHATQEVGKY*SVLEQT
Trigger: TGTCTGTTCTAGAACTGAGCAGTACTTTCCTACCTC...CTGTGTAGCATGCACAGTGACCCAGCTGAGTGGCAGGTGGTTGGAGGCAAGGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR CCA 90 bp ATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCTGTGTTGTGTATTCCGATGAACTaGGCAGATAAGAAACGTCTA +
Preference number: 4 (lower is better)
Translates to: ITDGTGPECSAQATASVLCIPMN*ADKKRL
Trigger: TAGACGTTTCTTATCTGCCCAGTTCATCGGAATACA...CAACACAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp CACGAGACAGTATGTGGCACTCTCAGCGTACACGGCAACGTTCCTTTCCGTCCTTTCCTTTTCACCTTCTaGATGGCTTTGGACTGCTGC +
Preference number: 4 (lower is better)
Translates to: HETVCGTLSVHGNVPFRPFLFTF*MALDCC
Trigger: GCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAA...AGGACGGAAAGGAACGTTGCCGTGTACGCTGAGAGTGCCACATACTGTCTCGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR CCA 90 bp ACAGCACAGCACCCAGTGAGTGAGCAGTGTCTGGAACCCCTGGGTCAGCAGTTTGTGAGAATGCCATACTaGATGAACTTGCCAACTGTC +
Preference number: 4 (lower is better)
Translates to: TAQHPVSEQCLEPLGQQFVRMPY*MNLPTV
Trigger: GACAGTTGGCAAGTTCATCCAGTATGGCATTCTCAC...AAACTGCTGACCCAGGGGTTCCAGACACTGCTCACTCACTGGGTGCTGTGCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR TCA 90 bp CCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATTTACTGGATAGGTCTTaGTGTTCATCAGCAACATCA +
Preference number: 4 (lower is better)
Translates to: PCQDTCHSGSDWRLQGTHLLDRS*CSSATS
Trigger: TGATGTTGCTGATGAACATCAAGACCTATCCAGTAA...ATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR GCA 90 bp TTTGCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCAGACAGATCAGAGGAAGTGACCTTCGATTATaGGATCATACGAGATGCCCA +
Preference number: 4 (lower is better)
Translates to: FAELTSRAATPTGRQIRGSDLRL*DHTRCP
Trigger: TGGGCATCTCGTATGATCGCATAATCGAAGGTCACT...TCCTCTGATCTGTCTGCCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235957.2
ENSMUST00000236859.2
CDS-3UTR GCA 90 bp CATAAATGTCCTTGCCTCCAACCACCTGCCACTCAGCTGGGTCACTGTGCATGCCAAGGAAAATGGCTGTaGAAAATCCACTCGGACGTA +
Preference number: 4 (lower is better)
Translates to: HKCPCLQPPATQLGHCACQGKWL*KIHSDV
Trigger: TACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTG...GCATGCACAGTGACCCAGCTGAGTGGCAGGTGGTTGGAGGCAAGGACATTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR CCA 90 bp CCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATTGTATTCCGATGAACTaGGCAGATAAGAAACGTCTA +
Preference number: 4 (lower is better)
Translates to: PCQDTCHSGSDWRLQGTHCIPMN*ADKKRL
Trigger: TAGACGTTTCTTATCTGCCCAGTTCATCGGAATACA...ATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CCA 90 bp GCTTACTTGGCTTGGCCTCACTTAAAAGCAGAGTGCAGCTTCATATTGCTTAGTGAAGGTAGCACAGGCTaGCGGCCTTCCTCACCAGCT +
Preference number: 4 (lower is better)
Translates to: AYLAWPHLKAECSFILLSEGSTG*RPSSPA
Trigger: AGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTC...ACTAAGCAATATGAAGCTGCACTCTGCTTTTAAGTGAGGCCAAGCCAAGTAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR CAA 72 bp GCCCATAAAGTCAGGGCTGGGCTAGCAACCCACAAGTaGACCTCAGGTTACATCCTAACAAAGTCCAAAAGG +
Preference number: 4 (lower is better)
Translates to: AHKVRAGLATHK*TSGYILTKSKR
Trigger: CCTTTTGGACTTTGTTAGGATGTAACCTGAGGTCAACTTGTGGGTTGCTAGCCCAGCCCTGACTTTATGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR TCA 90 bp ATTTGGAAAGCAAATGCCCCTCCCCCTCTGGCTTACTTGGCTTGGCCTCACTTAAAGGCTGTATTCCGATaGACTGGGCAGATAAGAAAC +
Preference number: 4 (lower is better)
Translates to: IWKANAPPPLAYLAWPHLKAVFR*TGQIRN
Trigger: GTTTCTTATCTGCCCAGTTCATCGGAATACAGCCTT...TAAGTGAGGCCAAGCCAAGTAAGCCAGAGGGGGAGGGGCATTTGCTTTCCAAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS-3UTR TCA 90 bp ACTGAGGTAGGAAAGTACTGCTCAGTTCTAGAACAGACACTCGCTTTTGCTTGGCGAGCCTCCGTCTTATaGAAAAGCCCCCAAGCTTGT +
Preference number: 4 (lower is better)
Translates to: TEVGKYCSVLEQTLAFAWRASVL*KSPQAC
Trigger: ACAAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCG...CCAAGCAAAAGCGAGTGTCTGTTCTAGAACTGAGCAGTACTTTCCTACCTCAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR GCA 90 bp GGCATAAACGTCAGTCAACATTTCCAAGGCAGTGTCCTTCACAAAGTCACACAGGTGCTCAGCCAGGTTTaGAATCAGCCTTCGTCGGAA +
Preference number: 4 (lower is better)
Translates to: GINVSQHFQGSVLHKVTQVLSQV*NQPSSE
Trigger: TTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCAC...CTGTGTGACTTTGTGAAGGACACTGCCTTGGAAATGTTGACTGACGTTTATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS-3UTR GCA 90 bp ACTCCAGTCCTAGCTTCTATTCCCTGCCATCCATCCCAGATATACTTTTCTGCAGTGATGAATTGCTGGTaGTCCTTGGACTGGCTCACC +
Preference number: 4 (lower is better)
Translates to: TPVLASIPCHPSQIYFSAVMNCW*SLDWLT
Trigger: GGTGAGCCAGTCCAAGGAGCACCAGCAATTCATCAC...TGCAGAAAAGTATATCTGGGATGGATGGCAGGGAATAGAAGCTAGGACTGGAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS-3UTR TCA 90 bp TTCCTCAGCCTCTCACCTCCTGACTGCAGTGTCATCTGCTTTCAGGCAGCTACTTTACTGGATAGGTCTTaGTGTTCATCAGCAACATCA +
Preference number: 4 (lower is better)
Translates to: FLSLSPPDCSVICFQAATLLDRS*CSSATS
Trigger: TGATGTTGCTGATGAACATCAAGACCTATCCAGTAA...AGTAGCTGCCTGAAAGCAGATGACACTGCAGTCAGGAGGTGAGAGGCTGAGGAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR TCA 90 bp GACTCACAGTCTTCCCCTGAAGGGCATGCATTTCAACTTGACAGAAATGCAGTACAGTTCCCCAGAAGCTaGATAGCATGCATGACGACA +
Preference number: 4 (lower is better)
Translates to: DSQSSPEGHAFQLDRNAVQFPRS*IACMTT
Trigger: TGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTG...TACTGCATTTCTGTCAAGTTGAAATGCATGCCCTTCAGGGGAAGACTGTGAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS-3UTR GCA 90 bp GGCTGGGCTAGCAACCCACAAGTTGACCTCAGGTTACATCCTAACAAAGTCCAACAAGGAAAATGGCTGTaGAAAATCCACTCGGACGTA +
Preference number: 4 (lower is better)
Translates to: GWASNPQVDLRLHPNKVQQGKWL*KIHSDV
Trigger: TACGTCCGAGTGGATTTTGCACAGCCATTTTCCTTG...TTGGACTTTGTTAGGATGTAACCTGAGGTCAACTTGTGGGTTGCTAGCCCAGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR GCA 90 bp GCTTACTTGGCTTGGCCTCACTTAAAAGCAGAGTGCAGCTTCATATTGCTTAGTCCTCTTGGACTCTGCTaGTGCTCAGTACATTCTCAG +
Preference number: 4 (lower is better)
Translates to: AYLAWPHLKAECSFILLSPLGLC*CSVHSQ
Trigger: CTGAGAATGTACTGAGCAGCAGCAGAGTCCAAGAGG...ACTAAGCAATATGAAGCTGCACTCTGCTTTTAAGTGAGGCCAAGCCAAGTAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS-3UTR GCA 90 bp TGCTCCTTAGTAAAGCAGTTGAGAGGAAAGGGCTCACATACAAACCATAACTTCAAGATCTCCAGGAACTaGTGCTGTCGGAGGAGTTCA +
Preference number: 4 (lower is better)
Translates to: CSLVKQLRGKGSHTNHNFKISRN*CCRRSS
Trigger: TGAACTCCTCCGACAGCAGCAGTTCCTGGAGATCTT...GAAGTTATGGTTTGTATGTGAGCCCTTTCCTCTCAACTGCTTTACTAAGGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR GCA 90 bp TGCTCCTTAGTAAAGCAGTTGAGAGGAAAGGGCTCACATACAAACCATAACTTCAGAAAGGTGATGAATTaGTGGTGCTCCTTGGACTGG +
Preference number: 4 (lower is better)
Translates to: CSLVKQLRGKGSHTNHNFRKVMN*WCSLDW
Trigger: CCAGTCCAAGGAGCACCAGCAATTCATCACCTTTCT...GAAGTTATGGTTTGTATGTGAGCCCTTTCCTCTCAACTGCTTTACTAAGGAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR GCA 90 bp GCTTACTTGGCTTGGCCTCACTTAAAAGCAGAGTGCAGCTTCATATTGCTTAGTACAGACACTCGCTTTTaGTTGGTCTCTTTGAAAACC +
Preference number: 4 (lower is better)
Translates to: AYLAWPHLKAECSFILLSTDTRF*LVSLKT
Trigger: GGTTTTCAAAGAGACCAAGCAAAAGCGAGTGTCTGT...ACTAAGCAATATGAAGCTGCACTCTGCTTTTAAGTGAGGCCAAGCCAAGTAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
3UTR CAA 72 bp GCTTGGCCTCACTTAAAAGCAGAGTGCAGCTTCATATaGCTTAGTATTAGGTTTTTATTTATTAAACTTGAC +
Preference number: 4 (lower is better)
Translates to: AWPHLKAECSFI*LSIRFLFIKLD
Trigger: GTCAAGTTTAATAAATAAAAACCTAATACTAAGCAATATGAAGCTGCACTCTGCTTTTAAGTGAGGCCAAGC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS TCA 90 bp GAAGGTAGCACAGGCTGGCGGCCTTCCTCACCAGCTGCTCCTGGCTaGTCAGGTTGCCGAGGCCTCCAGCGGACCCTCCAGAGCACCTCT +
Preference number: 5 (lower is better)
Translates to: EGSTGWRPSSPAAPG*SGCRGLQRTLQSTS
Trigger: AGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGTGCTACCTTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 90 bp GGAGCCCTGCCCGGGCACAGGAGGTCTTGCCACTGCGGGAGCGGGTaGCTTCCAGGAAGATCTCCAGGAACTGCTGCTGTCGGAGGAGTT +
Preference number: 5 (lower is better)
Translates to: GALPGHRRSCHCGSG*LPGRSPGTAAVGGV
Trigger: AACTCCTCCGACAGCAGCAGTTCCTGGAGATCTTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS TCA 90 bp GAGGATGTCGGGGATGGTGTTGGACGACAGAGTATCCACTACCACTaGGAGGAGCCCTGCCCGGGCACAGGAGGTCTTGCCACTGCGGGA +
Preference number: 5 (lower is better)
Translates to: EDVGDGVGRQSIHYH*EEPCPGTGGLATAG
Trigger: TCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 90 bp TATCCACTACCACTGAGAGGAGCCCTGCCCGGGCACAGGAGGTCTTaGCACTGCGGGAGCGGGTGCCTTCCAGGAAGATCTCCAGGAACT +
Preference number: 5 (lower is better)
Translates to: YPLPLRGALPGHRRS*HCGSGCLPGRSPGT
Trigger: AGTTCCTGGAGATCTTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp CTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCACAGCCACTTCAGCAATaGCCTCTTGGACTCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LLGVGQAGPCQDTCHSGSQPLQQ*PLGLCC
Trigger: GCAGCAGAGTCCAAGAGGCAATTGCTGAAGTGGCTG...TGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTCAGCCACTTCAGCAATaGCCTCTTGGACTCTGCTGC +
Preference number: 5 (lower is better)
Translates to: GSLLGVGQAGPCQDTCHSQPLQQ*PLGLCC
Trigger: GCAGCAGAGTCCAAGAGGCAATTGCTGAAGTGGCTG...AGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp TCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCAACCTTCTGGATGGCTTaGGACTGCTGCTGGGCAGAT +
Preference number: 5 (lower is better)
Translates to: SWKSPRGRAGWAMPGYLPTFWMA*DCCWAD
Trigger: ATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGT...TGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp CTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACGTGTCTTGGGATGTTGAGATTATaGCCCGAGGCGATGTACGGC +
Preference number: 5 (lower is better)
Translates to: LRLCWEERRSTGAEGTCLGMLRL*PEAMYG
Trigger: GCCGTACATCGCCTCGGGCAATAATCTCAACATCCC...AAGACACGTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTTGTGCTCAGCCAGGTTaGCAATCAGCCTTCGTCGGA +
Preference number: 5 (lower is better)
Translates to: GSLLGVGQAGPCQDTCHSCAQPG*QSAFVG
Trigger: TCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACA...AGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 90 bp CCACTGCGGGAGCGGGTGCCTTCCAGGAAGATCTCCAGGAACTGCTaGTGTCGGAGGAGTTCAACTACATGCCCATGGAGCAACGCTCTG +
Preference number: 5 (lower is better)
Translates to: PLRERVPSRKISRNC*CRRSSTTCPWSNAL
Trigger: CAGAGCGTTGCTCCATGGGCATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATCTTCCTGGAAGGCACCCGCTCCCGCAGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTTTCAGCAATTGCCTCTaGGACTCTGCTGCTGCTCAG +
Preference number: 5 (lower is better)
Translates to: GSLLGVGQAGPCQDTCHSFSNCL*DSAAAQ
Trigger: CTGAGCAGCAGCAGAGTCCAAGAGGCAATTGCTGAA...AGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp AGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTTTCAGCAATTGCCTCTaGGACTCTGCTGCTGCTCAG +
Preference number: 5 (lower is better)
Translates to: RAGWAMPGYLPLWVRLEAFSNCL*DSAAAQ
Trigger: CTGAGCAGCAGCAGAGTCCAAGAGGCAATTGCTGAA...AGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp CAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAACAGCCACTTCAGCAATaGCCTCTTGGACTCTGCTGC +
Preference number: 5 (lower is better)
Translates to: QAGPCQDTCHSGSDWRLQQPLQQ*PLGLCC
Trigger: GCAGCAGAGTCCAAGAGGCAATTGCTGAAGTGGCTG...TTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp ACGTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTTCTGGATGGCTTaGGACTGCTGCTGGGCAGAT +
Preference number: 5 (lower is better)
Translates to: TCLPGSLLGVGQAGPCQDTFWMA*DCCWAD
Trigger: ATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGT...ATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACACGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACACCTTCTGGATGGCTTaGGACTGCTGCTGGGCAGAT +
Preference number: 5 (lower is better)
Translates to: VSSWKSPRGRAGWAMPGYTFWMA*DCCWAD
Trigger: ATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGT...GTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp ACGTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATGGGATGTTGAGATTATaGCCCGAGGCGATGTACGGC +
Preference number: 5 (lower is better)
Translates to: TCLPGSLLGVGQAGPCQDGMLRL*PEAMYG
Trigger: GCCGTACATCGCCTCGGGCAATAATCTCAACATCCC...ATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACACGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGAGGCTCTCGTTCTTCTaGGGCTTTCCCAACTGTTCG +
Preference number: 5 (lower is better)
Translates to: GRAGWAMPGYLPLWVRLERLSFF*GFPNCS
Trigger: CGAACAGTTGGGAAAGCCCAAGAAGAACGAGAGCCT...CTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp TCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCAAGGCTCTCGTTCTTCTaGGGCTTTCCCAACTGTTCG +
Preference number: 5 (lower is better)
Translates to: SWKSPRGRAGWAMPGYLPRLSFF*GFPNCS
Trigger: CGAACAGTTGGGAAAGCCCAAGAAGAACGAGAGCCT...TGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTAGTTCCGGAAGCTTCTaGTCCCACTGCTGTTCTGCA +
Preference number: 5 (lower is better)
Translates to: GSLLGVGQAGPCQDTCHSSSGSF*SHCCSA
Trigger: TGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACT...AGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp AGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTACTGGACCGCTGAAGTaGTGGACAAAGATGGCAGCA +
Preference number: 5 (lower is better)
Translates to: RAGWAMPGYLPLWVRLEATGPLK*WTKMAA
Trigger: TGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGT...AGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS GCA 90 bp TTGCCACTGCGGGAGCGGGTGCCTTCCAGGAAGATCTCCAGGAACTaGTGCTGTCGGAGGAGTTCAACTACATGCCCATGGAGCAACGCT +
Preference number: 5 (lower is better)
Translates to: LPLRERVPSRKISRN*CCRRSSTTCPWSNA
Trigger: AGCGTTGCTCCATGGGCATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATCTTCCTGGAAGGCACCCGCTCCCGCAGTGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp CTGCGTCTGTGTTGGGAGGAGCGCAGGTCCACGGGGGCAGAAGGCACGTGTCTTCTGAAGAAGGTAGGTTaGAACCCACAGTCAACCCAG +
Preference number: 5 (lower is better)
Translates to: LRLCWEERRSTGAEGTCLLKKVG*NPQSTQ
Trigger: CTGGGTTGACTGTGGGTTCAAACCTACCTTCTTCAG...AAGACACGTGCCTTCTGCCCCCGTGGACCTGCGCTCCTCCCAACACAGACGCAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp TGGGGAGCAGCGCTCATTTGCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCAGCCACTTCAGCAATaGCCTCTTGGACTCTGCTGC +
Preference number: 5 (lower is better)
Translates to: WGAALICRADKQGSNTHWQPLQQ*PLGLCC
Trigger: GCAGCAGAGTCCAAGAGGCAATTGCTGAAGTGGCTG...CCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGCAAATGAGCGCTGCTCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000235957.2
ENSMUST00000236859.2
CDS-3UTR CAA 90 bp GGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGCTGTACAGAATGTCTTaGCGTCCATCTGGGGTTTCA +
Preference number: 5 (lower is better)
Translates to: GVGQAGPCQDTCHSGSDWLYRMS*RPSGVS
Trigger: TGAAACCCCAGATGGACGCAAAGACATTCTGTACAG...CCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp ACGTGTCTTCCTGGAAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATAGGCTCTCGTTCTTCTaGGGCTTTCCCAACTGTTCG +
Preference number: 5 (lower is better)
Translates to: TCLPGSLLGVGQAGPCQDRLSFF*GFPNCS
Trigger: CGAACAGTTGGGAAAGCCCAAGAAGAACGAGAGCCT...ATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTTCCAGGAAGACACGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp AGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGCAACATCATTCGGTCTaGAAGGAAGGATCGCTGGTA +
Preference number: 5 (lower is better)
Translates to: SLLGVGQAGPCQDTCHSGQHHSV*KEGSLV
Trigger: TACCAGCGATCCTTCCTTCAAGACCGAATGATGTTG...CCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp AGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGATCTTCCTGGTCATCTaGCTCTGCCACTGTGAGAAT +
Preference number: 5 (lower is better)
Translates to: SLLGVGQAGPCQDTCHSGIFLVI*LCHCEN
Trigger: ATTCTCACAGTGGCAGAGCAAGATGACCAGGAAGAT...CCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp CAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAAGTTCCGGAAGCTTCTaGTCCCACTGCTGTTCTGCA +
Preference number: 5 (lower is better)
Translates to: QAGPCQDTCHSGSDWRLQSSGSF*SHCCSA
Trigger: TGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACT...TTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 90 bp TCATCCCTGGGGAGACGGTGGCGACCATCTCCTGGAGGATCTTCCTaGCTTTCCTTTTCACCTTCTGGATGGCTTTGGACTGCTGCTGGG +
Preference number: 5 (lower is better)
Translates to: SSLGRRWRPSPGGSS*LSFSPSGWLWTAAG
Trigger: CCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp CCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCCTGAAGAAGGTAGGTTaGAACCCACAGTCAACCCAG +
Preference number: 5 (lower is better)
Translates to: PATLGQTGGCKGLISSSLLKKVG*NPQSTQ
Trigger: CTGGGTTGACTGTGGGTTCAAACCTACCTTCTTCAG...GAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCAGACAGATCAGAGGAAGCGGGATGTTGAGATTATaGCCCGAGGCGATGTACGGC +
Preference number: 5 (lower is better)
Translates to: AELTSRAATPTGRQIRGSGMLRL*PEAMYG
Trigger: GCCGTACATCGCCTCGGGCAATAATCTCAACATCCC...GCTTCCTCTGATCTGTCTGCCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235957.2
ENSMUST00000236859.2
CDS-3UTR CAA 90 bp GTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGTACAGAATGTCTTaGCGTCCATCTGGGGTTTCA +
Preference number: 5 (lower is better)
Translates to: VGQAGPCQDTCHSGSDWRLYRMS*RPSGVS
Trigger: TGAAACCCCAGATGGACGCAAAGACATTCTGTACAG...CCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGATCTTCCTGGTCATCTaGCTCTGCCACTGTGAGAAT +
Preference number: 5 (lower is better)
Translates to: VGQAGPCQDTCHSGSDWRIFLVI*LCHCEN
Trigger: ATTCTCACAGTGGCAGAGCAAGATGACCAGGAAGAT...CCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGAAGAAAGGTGATGAATaGCTGGTGCTCCTTGGACTG +
Preference number: 5 (lower is better)
Translates to: VGQAGPCQDTCHSGSDWRKKGDE*LVLLGL
Trigger: CAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTT...CCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp AAGTCTCCTCGGGGTAGGGCAGGCTGGGCCATGCCAGGATACCTGCCACTCTGGAAGAAAGGTGATGAATaGCTGGTGCTCCTTGGACTG +
Preference number: 5 (lower is better)
Translates to: KSPRGRAGWAMPGYLPLWKKGDE*LVLLGL
Trigger: CAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTT...CCAGAGTGGCAGGTATCCTGGCATGGCCCAGCCTGCCCTACCCCGAGGAGACTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS GCA 90 bp AGCGCAGGACTTGCTGGCGGTGAAGAGAATGTGCTCAGCCAGGTTTaGAATCAGCCTTCGTCGGAAGGCTTCGTCTGCTGGGTTTCTGGA +
Preference number: 5 (lower is better)
Translates to: SAGLAGGEENVLSQV*NQPSSEGFVCWVSG
Trigger: TCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCACCGCCAGCAAGTCCTGCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 90 bp ACCCAGAGATGGGATACTGGGGTTGAAAAACCTTTCCCAGCTCTGTaGCGTGCAGGAATAGCAGCACCTTCCCACGAAGGGCCTCTTCCG +
Preference number: 5 (lower is better)
Translates to: TQRWDTGVEKPFPAL*RAGIAAPSHEGPLP
Trigger: CGGAAGAGGCCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGGGAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236422.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp CATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCTGGATGGGATACTGGGGTaGAAAAACCTTTCCCAGCTC +
Preference number: 5 (lower is better)
Translates to: HESQMALALSALRRPLRLDGILG*KNLSQL
Trigger: GAGCTGGGAAAGGTTTTTCAACCCCAGTATCCCATC...CAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GATCATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTTTCAGCAATTGCCTCTaGGACTCTGCTGCTGCTCAG +
Preference number: 5 (lower is better)
Translates to: DHESQMALALSALRRPLRFSNCL*DSAAAQ
Trigger: CTGAGCAGCAGCAGAGTCCAAGAGGCAATTGCTGAA...ACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp ATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGGGATGTTGAGATTATaGCCCGAGGCGATGTACGGC +
Preference number: 5 (lower is better)
Translates to: MPGYLPLWVRLEAARDSSGMLRL*PEAMYG
Trigger: GCCGTACATCGCCTCGGGCAATAATCTCAACATCCC...TGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp ACAGCACAGCACCCAGTGAGTGAGCAGTGTCTGGAACCCCTGGGTCAGCAGTTTTGTGCTCAGCCAGGTTaGCAATCAGCCTTCGTCGGA +
Preference number: 5 (lower is better)
Translates to: TAQHPVSEQCLEPLGQQFCAQPG*QSAFVG
Trigger: TCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACA...AAACTGCTGACCCAGGGGTTCCAGACACTGCTCACTCACTGGGTGCTGTGCTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR CAA 90 bp GATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCAGTTCCGGAAGCTTCTaGTCCCACTGCTGTTCTGCA +
Preference number: 5 (lower is better)
Translates to: DTCHSGSDWRLQGTHQLLSSGSF*SHCCSA
Trigger: TGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACT...GAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp AGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCACTGGACCGCTGAAGTaGTGGACAAAGATGGCAGCA +
Preference number: 5 (lower is better)
Translates to: RIPATLGQTGGCKGLISSTGPLK*WTKMAA
Trigger: TGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGT...GGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS GCA 90 bp TGGGTGGACATGATAGCGCAGGACTTGCTGGCGGTGAAGAGAATGTaGTCAGCCAGGTTTGCAATCAGCCTTCGTCGGAAGGCTTCGTCT +
Preference number: 5 (lower is better)
Translates to: WVDMIAQDLLAVKRM*SARFAISLRRKASS
Trigger: AGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCACCGCCAGCAAGTCCTGCGCTATCATGTCCACCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 90 bp CCTGGAGGATCTTCCTGGCTTTCCTTTTCACCTTCTGGATGGCTTTaGACTGCTGCTGGGCAGATCCATCTGGGTTCAACTCCGCAGCCA +
Preference number: 5 (lower is better)
Translates to: PGGSSWLSFSPSGWL*TAAGQIHLGSTPQP
Trigger: TGGCTGCGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp AGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCCTGAAGAAGGTAGGTTaGAACCCACAGTCAACCCAG +
Preference number: 5 (lower is better)
Translates to: RIPATLGQTGGCKGLISSLKKVG*NPQSTQ
Trigger: CTGGGTTGACTGTGGGTTCAAACCTACCTTCTTCAG...GGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp CATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCTGCTGTACAGAATGTCTTaGCGTCCATCTGGGGTTTCA +
Preference number: 5 (lower is better)
Translates to: HESQMALALSALRRPLRLLYRMS*RPSGVS
Trigger: TGAAACCCCAGATGGACGCAAAGACATTCTGTACAG...CAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp CATCCTAACAAAGTCCAAAAGGGAGAGCACGGCAAGGGACGTGGGACGCACACGAGGCTCTCGTTCTTCTaGGGCTTTCCCAACTGTTCG +
Preference number: 5 (lower is better)
Translates to: HPNKVQKGEHGKGRGTHTRLSFF*GFPNCS
Trigger: CGAACAGTTGGGAAAGCCCAAGAAGAACGAGAGCCT...CGTGTGCGTCCCACGTCCCTTGCCGTGCTCTCCCTTTTGGACTTTGTTAGGATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR CAA 90 bp CATGAATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCTGCAACATCATTCGGTCTaGAAGGAAGGATCGCTGGTA +
Preference number: 5 (lower is better)
Translates to: HESQMALALSALRRPLRLQHHSV*KEGSLV
Trigger: TACCAGCGATCCTTCCTTCAAGACCGAATGATGTTG...CAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGATTCATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp CATAAATGTCCTTGCCTCCAACCACCTGCCACTCAGCTGGGTCACTGTGCATGCTGTGCTCAGCCAGGTTaGCAATCAGCCTTCGTCGGA +
Preference number: 5 (lower is better)
Translates to: HKCPCLQPPATQLGHCACCAQPG*QSAFVG
Trigger: TCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACA...GCATGCACAGTGACCCAGCTGAGTGGCAGGTGGTTGGAGGCAAGGACATTTATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR CAA 90 bp CTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCGTGTCTCATGACAAACTaGGTAAAAAGTCTGGCAGGG +
Preference number: 5 (lower is better)
Translates to: LPLWVRLEAARDSSAPRSCLMTN*VKSLAG
Trigger: CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACA...CGAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 90 bp GCCGAGGCCTCCAGCGGACCCTCCAGAGCACCTCTTATTCAGGACTaGATAGATGCTGCAAGCTATGATGGCTTCCATGATGAACACATG +
Preference number: 5 (lower is better)
Translates to: AEASSGPSRAPLIQD*IDAASYDGFHDEHM
Trigger: CATGTGTTCATCATGGAAGCCATCATAGCTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGAGGCCTCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 90 bp CCATCTCCTGGAGGATCTTCCTGGCTTTCCTTTTCACCTTCTGGATaGCTTTGGACTGCTGCTGGGCAGATCCATCTGGGTTCAACTCCG +
Preference number: 5 (lower is better)
Translates to: PSPGGSSWLSFSPSG*LWTAAGQIHLGSTP
Trigger: CGGAGTTGAACCCAGATGGATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp AACAAAGTCCAAAAGGGAGAGCACGGCAAGGGACGTGGGACGCACACGTCTCTGCTGAAGAAGGTAGGTTaGAACCCACAGTCAACCCAG +
Preference number: 5 (lower is better)
Translates to: NKVQKGEHGKGRGTHTSLLKKVG*NPQSTQ
Trigger: CTGGGTTGACTGTGGGTTCAAACCTACCTTCTTCAG...CAGAGACGTGTGCGTCCCACGTCCCTTGCCGTGCTCTCCCTTTTGGACTTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR CAA 90 bp CACGGCAACGTTCCTTTCCGTCCTGGTGATAAGGTACCTGTGCAGTTTCTGCAGTGTGCTCAGCCAGGTTaGCAATCAGCCTTCGTCGGA +
Preference number: 5 (lower is better)
Translates to: HGNVPFRPGDKVPVQFLQCAQPG*QSAFVG
Trigger: TCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACA...CTGCAGAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR CAA 90 bp ATCACAGATGGCACTGGCCCTGAGTGCTCTGCGCAGGCCACTGCGTCTGTGTTGTGTCTCATGACAAACTaGGTAAAAAGTCTGGCAGGG +
Preference number: 5 (lower is better)
Translates to: ITDGTGPECSAQATASVLCLMTN*VKSLAG
Trigger: CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACA...CAACACAGACGCAGTGGCCTGCGCAGAGCACTCAGGGCCAGTGCCATCTGTGAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp TTTGCAGAGCTGACAAGCAGGGCAGCAACACCCACTGGCAGACAGATCAGAGGAAGTTCCGGAAGCTTCTaGTCCCACTGCTGTTCTGCA +
Preference number: 5 (lower is better)
Translates to: FAELTSRAATPTGRQIRGSSGSF*SHCCSA
Trigger: TGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACT...TCCTCTGATCTGTCTGCCAGTGGGTGTTGCTGCCCTGCTTGTCAGCTCTGCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000235957.2
ENSMUST00000236859.2
CDS-3UTR CAA 90 bp CCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCAACAGACACTCGCTTTaGCTTGGTCTCTTTGAAAAC +
Preference number: 5 (lower is better)
Translates to: PATLGQTGGCKGLISSSLNRHSL*LGLFEN
Trigger: GTTTTCAAAGAGACCAAGCAAAAGCGAGTGTCTGTT...GAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS GCA 90 bp TCCTCGTCACTTCTCCAGTTCAGTTCCGGAAGCTTCTTGTCCCACTaGTGTTCTGCAAGGCCAGGACTGACATCTTCCTGGTCATCTTGC +
Preference number: 5 (lower is better)
Translates to: SSSLLQFSSGSFLSH*CSARPGLTSSWSSC
Trigger: GCAAGATGACCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp ATGCCAGGATACCTGCCACTCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAAAGAAAGGTGATGAATaGCTGGTGCTCCTTGGACTG +
Preference number: 5 (lower is better)
Translates to: MPGYLPLWVRLEAARDSSKKGDE*LVLLGL
Trigger: CAGTCCAAGGAGCACCAGCAATTCATCACCTTTCTT...TGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGAGTGGCAGGTATCCTGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp TTCCTCAGCCTCTCACCTCCTGACTGCAGTGTCATCTGCTTTCAGGCAGCTACTACTGGACCGCTGAAGTaGTGGACAAAGATGGCAGCA +
Preference number: 5 (lower is better)
Translates to: FLSLSPPDCSVICFQAATTGPLK*WTKMAA
Trigger: TGCTGCCATCTTTGTCCACAACTTCAGCGGTCCAGT...AGTAGCTGCCTGAAAGCAGATGACACTGCAGTCAGGAGGTGAGAGGCTGAGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS TCA 90 bp GCACCGGCAGAAACAAGAGCGGCAGGTTCGTCTCAGTTGCAGCCTTaGCCATCTCGAGTTGACCCTTGTGAATCTGAATGTTCCAGAAGA +
Preference number: 5 (lower is better)
Translates to: APAETRAAGSSQLQP*PSRVDPCESECSRR
Trigger: TCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAGACGAACCTGCCGCTCTTGTTTCTGCCGGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp TCTGGGTCAGACTGGAGGCTGCAAGGGACTCATCAGCTCCTCGCTCGAGATAGGAACAGACACTCGCTTTaGCTTGGTCTCTTTGAAAAC +
Preference number: 5 (lower is better)
Translates to: SGSDWRLQGTHQLLARDRNRHSL*LGLFEN
Trigger: GTTTTCAAAGAGACCAAGCAAAAGCGAGTGTCTGTT...CCTATCTCGAGCGAGGAGCTGATGAGTCCCTTGCAGCCTCCAGTCTGACCCAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS TCA 90 bp TGTAGTGACCTTCGATTATGCGATCATACGAGATGCCCACGGGTATaGCGAGGATGTCGGGGATGGTGTTGGACGACAGAGTATCCACTA +
Preference number: 5 (lower is better)
Translates to: CSDLRLCDHTRCPRV*RGCRGWCWTTEYPL
Trigger: TAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAGGTCACTACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 90 bp ATGCCCATGGAGCAACGCTCTGTACAGAATGTCTTTGCGTCCATCTaGGGTTTCATCGAGCCTCCGTCTTATGAAAAAGCCCCCAAGCTT +
Preference number: 5 (lower is better)
Translates to: MPMEQRSVQNVFASI*GFIEPPSYEKAPKL
Trigger: AAGCTTGGGGGCTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGGCAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS TCA 90 bp TCTTTCCTGCTCGTGTGGGTGATTGTGACACAGTTCCCCAGAAGCTaGATAGCATGCATGACGACATCTTCTGAATTCCCGGAGAAGCCT +
Preference number: 5 (lower is better)
Translates to: SFLLVWVIVTQFPRS*IACMTTSSEFPEKP
Trigger: AGGCTTCTCCGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAGCAGGAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 90 bp GCCTTCGTCGGAAGGCTTCGTCTGCTGGGTTTCTGGACTCGTTACTaGATAGGTCTTGATGTTCATCAGCAACATCATTCGGTCTTGAAG +
Preference number: 5 (lower is better)
Translates to: AFVGRLRLLGFWTRY*IGLDVHQQHHSVLK
Trigger: CTTCAAGACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCCGACGAAGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GCGTACACGGCAACGTTCCTTTCCGTCCTGGTGATAAGGTACCTGTGCAGTTTCTGTCTCATGACAAACTaGGTAAAAAGTCTGGCAGGG +
Preference number: 5 (lower is better)
Translates to: AYTATFLSVLVIRYLCSFCLMTN*VKSLAG
Trigger: CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACA...GAAACTGCACAGGTACCTTATCACCAGGACGGAAAGGAACGTTGCCGTGTACGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000236859.2
CDS-3UTR CAA 90 bp GGCATAAACGTCAGTCAACATTTCCAAGGCAGTGTCCTTCACAAAGTCACACAGTTCAGCAATTGCCTCTaGGACTCTGCTGCTGCTCAG +
Preference number: 5 (lower is better)
Translates to: GINVSQHFQGSVLHKVTQFSNCL*DSAAAQ
Trigger: CTGAGCAGCAGCAGAGTCCAAGAGGCAATTGCTGAA...CTGTGTGACTTTGTGAAGGACACTGCCTTGGAAATGTTGACTGACGTTTATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS TCA 90 bp AAGGCTTCGTCTGCTGGGTTTCTGGACTCGTTACTGGATAGGTCTTaGTGTTCATCAGCAACATCATTCGGTCTTGAAGGAAGGATCGCT +
Preference number: 5 (lower is better)
Translates to: KASSAGFLDSLLDRS*CSSATSFGLEGRIA
Trigger: AGCGATCCTTCCTTCAAGACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 90 bp CCTCACTGGTGTGTTTACATCGGCCAAGGCTGTATTCCGATGAACTaGGCAGATAAGAAACGTCTATTGTGCCAACTGTCACTGAAGACT +
Preference number: 5 (lower is better)
Translates to: PHWCVYIGQGCIPMN*ADKKRLLCQLSLKT
Trigger: AGTCTTCAGTGACAGTTGGCACAATAGACGTTTCTTATCTGCCCAGTTCATCGGAATACAGCCTTGGCCGATGTAAACACACCAGTGAGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236422.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp TGCTCCTTAGTAAAGCAGTTGAGAGGAAAGGGCTCACATACAAACCATAACTTCACCTTCTGGATGGCTTaGGACTGCTGCTGGGCAGAT +
Preference number: 5 (lower is better)
Translates to: CSLVKQLRGKGSHTNHNFTFWMA*DCCWAD
Trigger: ATCTGCCCAGCAGCAGTCCAAAGCCATCCAGAAGGT...GAAGTTATGGTTTGTATGTGAGCCCTTTCCTCTCAACTGCTTTACTAAGGAGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR CAA 90 bp CGAGCTCCTCAAAAGCAGCAGGTGTCAATCACTCAAAGGTATCAGCAACAGGGATGTCTCATGACAAACTaGGTAAAAAGTCTGGCAGGG +
Preference number: 5 (lower is better)
Translates to: RAPQKQQVSITQRYQQQGCLMTN*VKSLAG
Trigger: CCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACA...TCCCTGTTGCTGATACCTTTGAGTGATTGACACCTGCTGCTTTTGAGGAGCTCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS CCA 90 bp TGTGTGCGTTTCATTGATATAAATAACATTCCGCAAACCCAGAGATaGGATACTGGGGTTGAAAAACCTTTCCCAGCTCTGTGGCGTGCA +
Preference number: 5 (lower is better)
Translates to: CVRFIDINNIPQTQR*DTGVEKPFPALWRA
Trigger: TGCACGCCACAGAGCTGGGAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAAACGCACACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236422.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS-3UTR CAA 90 bp GCTTACTTGGCTTGGCCTCACTTAAAAGCAGAGTGCAGCTTCATATTGCTTAGTCTGTACAGAATGTCTTaGCGTCCATCTGGGGTTTCA +
Preference number: 5 (lower is better)
Translates to: AYLAWPHLKAECSFILLSLYRMS*RPSGVS
Trigger: TGAAACCCCAGATGGACGCAAAGACATTCTGTACAG...ACTAAGCAATATGAAGCTGCACTCTGCTTTTAAGTGAGGCCAAGCCAAGTAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000235957.2
CDS-3UTR CAA 90 bp CTCCTGACTGCAGTGTCATCTGCTTTCAGGCAGCTACTCAGATACATCTTGAGTAACAGACACTCGCTTTaGCTTGGTCTCTTTGAAAAC +
Preference number: 5 (lower is better)
Translates to: LLTAVSSAFRQLLRYILSNRHSL*LGLFEN
Trigger: GTTTTCAAAGAGACCAAGCAAAAGCGAGTGTCTGTT...ACTCAAGATGTATCTGAGTAGCTGCCTGAAAGCAGATGACACTGCAGTCAGGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS-3UTR CAA 90 bp TGCTCCTTAGTAAAGCAGTTGAGAGGAAAGGGCTCACATACAAACCATAACTTCATCTTCCTGGTCATCTaGCTCTGCCACTGTGAGAAT +
Preference number: 5 (lower is better)
Translates to: CSLVKQLRGKGSHTNHNFIFLVI*LCHCEN
Trigger: ATTCTCACAGTGGCAGAGCAAGATGACCAGGAAGAT...GAAGTTATGGTTTGTATGTGAGCCCTTTCCTCTCAACTGCTTTACTAAGGAGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
CDS TCA 72 bp ACAGGCTGGCGGCCTTCCTCACCAGCTGCTCCTGGCTaGTCAGGTTGCCGAGGCCTCCAGCGGACCCTCCAG +
Preference number: 6 (lower is better)
Translates to: TGWRPSSPAAPG*SGCRGLQRTLQ
Trigger: CTGGAGGGTCCGCTGGAGGCCTCGGCAACCTGATCAGCCAGGAGCAGCTGGTGAGGAAGGCCGCCAGCCTGT
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 72 bp AGAGGAGCCCTGCCCGGGCACAGGAGGTCTTGCCACTaGGGGAGCGGGTGCCTTCCAGGAAGATCTCCAGGA +
Preference number: 6 (lower is better)
Translates to: RGALPGHRRSCH*GSGCLPGRSPG
Trigger: TCCTGGAGATCTTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 72 bp CCACTGAGAGGAGCCCTGCCCGGGCACAGGAGGTCTTaGCACTGCGGGAGCGGGTGCCTTCCAGGAAGATCT +
Preference number: 6 (lower is better)
Translates to: PLRGALPGHRRS*HCGSGCLPGRS
Trigger: AGATCTTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 72 bp CCCGGGCACAGGAGGTCTTGCCACTGCGGGAGCGGGTaGCTTCCAGGAAGATCTCCAGGAACTGCTGCTGTC +
Preference number: 6 (lower is better)
Translates to: PGHRRSCHCGSG*LPGRSPGTAAV
Trigger: GACAGCAGCAGTTCCTGGAGATCTTCCTGGAAGGCACCCGCTCCCGCAGTGGCAAGACCTCCTGTGCCCGGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS TCA 72 bp GGGGATGGTGTTGGACGACAGAGTATCCACTACCACTaGGAGGAGCCCTGCCCGGGCACAGGAGGTCTTGCC +
Preference number: 6 (lower is better)
Translates to: GDGVGRQSIHYH*EEPCPGTGGLA
Trigger: GGCAAGACCTCCTGTGCCCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 72 bp CGGGAGCGGGTGCCTTCCAGGAAGATCTCCAGGAACTaGTGCTGTCGGAGGAGTTCAACTACATGCCCATGG +
Preference number: 6 (lower is better)
Translates to: RERVPSRKISRN*CCRRSSTTCPW
Trigger: CCATGGGCATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGAGATCTTCCTGGAAGGCACCCGCTCCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 90 bp TCATACGAGATGCCCACGGGTATGACGAGGATGTCGGGGATGGTGTaGGACGACAGAGTATCCACTACCACTGAGAGGAGCCCTGCCCGG +
Preference number: 6 (lower is better)
Translates to: SYEMPTGMTRMSGMV*DDRVSTTTERSPAR
Trigger: CCGGGCAGGGCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 72 bp CTTGCTGGCGGTGAAGAGAATGTGCTCAGCCAGGTTTaGAATCAGCCTTCGTCGGAAGGCTTCGTCTGCTGG +
Preference number: 6 (lower is better)
Translates to: LAGGEENVLSQV*NQPSSEGFVCW
Trigger: CCAGCAGACGAAGCCTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCACCGCCAGCAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 72 bp CTGATCATCCCTGGGGAGACGGTGGCGACCATCTCCTaGAGGATCTTCCTGGCTTTCCTTTTCACCTTCTGG +
Preference number: 6 (lower is better)
Translates to: LIIPGETVATIS*RIFLAFLFTFW
Trigger: CCAGAAGGTGAAAAGGAAAGCCAGGAAGATCCTCCAGGAGATGGTCGCCACCGTCTCCCCAGGGATGATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 72 bp ATGCCCACGGGTATGACGAGGATGTCGGGGATGGTGTaGGACGACAGAGTATCCACTACCACTGAGAGGAGC +
Preference number: 6 (lower is better)
Translates to: MPTGMTRMSGMV*DDRVSTTTERS
Trigger: GCTCCTCTCAGTGGTAGTGGATACTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 72 bp TGGGATACTGGGGTTGAAAAACCTTTCCCAGCTCTGTaGCGTGCAGGAATAGCAGCACCTTCCCACGAAGGG +
Preference number: 6 (lower is better)
Translates to: WDTGVEKPFPAL*RAGIAAPSHEG
Trigger: CCCTTCGTGGGAAGGTGCTGCTATTCCTGCACGCCACAGAGCTGGGAAAGGTTTTTCAACCCCAGTATCCCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236422.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 72 bp CAGGCCACAATGTGGGTGGACATGATAGCGCAGGACTaGCTGGCGGTGAAGAGAATGTGCTCAGCCAGGTTT +
Preference number: 6 (lower is better)
Translates to: QATMWVDMIAQD*LAVKRMCSARF
Trigger: AAACCTGGCTGAGCACATTCTCTTCACCGCCAGCAAGTCCTGCGCTATCATGTCCACCCACATTGTGGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS TCA 72 bp CTTCGATTATGCGATCATACGAGATGCCCACGGGTATaGCGAGGATGTCGGGGATGGTGTTGGACGACAGAG +
Preference number: 6 (lower is better)
Translates to: LRLCDHTRCPRV*RGCRGWCWTTE
Trigger: CTCTGTCGTCCAACACCATCCCCGACATCCTCGTCATACCCGTGGGCATCTCGTATGATCGCATAATCGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 72 bp ATGATAGCGCAGGACTTGCTGGCGGTGAAGAGAATGTaGTCAGCCAGGTTTGCAATCAGCCTTCGTCGGAAG +
Preference number: 6 (lower is better)
Translates to: MIAQDLLAVKRM*SARFAISLRRK
Trigger: CTTCCGACGAAGGCTGATTGCAAACCTGGCTGAGCACATTCTCTTCACCGCCAGCAAGTCCTGCGCTATCAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 72 bp TCCTCGTCACTTCTCCAGTTCAGTTCCGGAAGCTTCTaGTCCCACTGCTGTTCTGCAAGGCCAGGACTGACA +
Preference number: 6 (lower is better)
Translates to: SSSLLQFSSGSF*SHCCSARPGLT
Trigger: TGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS GCA 72 bp CATGCCCATGGAGCAACGCTCTGTACAGAATGTCTTTaGGTCCATCTGGGGTTTCATCGAGCCTCCGTCTTA +
Preference number: 6 (lower is better)
Translates to: HAHGATLCTECL*VHLGFHRASVL
Trigger: TAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGGCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 72 bp ACATGCCCATGGAGCAACGCTCTGTACAGAATGTCTTaGCGTCCATCTGGGGTTTCATCGAGCCTCCGTCTT +
Preference number: 6 (lower is better)
Translates to: TCPWSNALYRMS*RPSGVSSSLRL
Trigger: AAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGGCATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 90 bp AGATCCATCTGGGTTCAACTCCGCAGCCACTTCAGCAATTGCCTCTaGGACTCTGCTGCTGCTCAGTACATTCTCAGTAACACTGGTGGC +
Preference number: 6 (lower is better)
Translates to: RSIWVQLRSHFSNCL*DSAAAQYILSNTGG
Trigger: GCCACCAGTGTTACTGAGAATGTACTGAGCAGCAGCAGAGTCCAAGAGGCAATTGCTGAAGTGGCTGCGGAGTTGAACCCAGATGGATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 90 bp TCTTCATCTTCCTCGTCACTTCTCCAGTTCAGTTCCGGAAGCTTCTaGTCCCACTGCTGTTCTGCAAGGCCAGGACTGACATCTTCCTGG +
Preference number: 6 (lower is better)
Translates to: SSSSSSLLQFSSGSF*SHCCSARPGLTSSW
Trigger: CCAGGAAGATGTCAGTCCTGGCCTTGCAGAACAGCAGTGGGACAAGAAGCTTCCGGAACTGAACTGGAGAAGTGACGAGGAAGATGAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000237146.2
CDS CAA 90 bp CTCAGTAACACTGGTGGCAAACATGCCCTTATGGACGTCTCGCTCTaGAACAAAAAGGATGTAAGACAGCCGTCTCGCCAGCCATCCTCT +
Preference number: 6 (lower is better)
Translates to: LSNTGGKHALMDVSL*NKKDVRQPSRQPSS
Trigger: AGAGGATGGCTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGTGTTACTGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 72 bp TCCAGGAACTGCTGCTGTCGGAGGAGTTCAACTACATaGCCATGGAGCAACGCTCTGTACAGAATGTCTTTG +
Preference number: 6 (lower is better)
Translates to: SRNCCCRRSSTT*PWSNALYRMSL
Trigger: CAAAGACATTCTGTACAGAGCGTTGCTCCATGGGCATGTAGTTGAACTCCTCCGACAGCAGCAGTTCCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 72 bp TCCAGCGGACCCTCCAGAGCACCTCTTATTCAGGACTaGATAGATGCTGCAAGCTATGATGGCTTCCATGAT +
Preference number: 6 (lower is better)
Translates to: SSGPSRAPLIQD*IDAASYDGFHD
Trigger: ATCATGGAAGCCATCATAGCTTGCAGCATCTATGCAGTCCTGAATAAGAGGTGCTCTGGAGGGTCCGCTGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 72 bp AACTGCTGCTGTCGGAGGAGTTCAACTACATGCCCATaGAGCAACGCTCTGTACAGAATGTCTTTGCGTCCA +
Preference number: 6 (lower is better)
Translates to: NCCCRRSSTTCP*SNALYRMSLRP
Trigger: TGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGGCATGTAGTTGAACTCCTCCGACAGCAGCAGTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 72 bp ACTGGTGGCAAACATGCCCTTATGGACGTCTCGCTCTaGAACAAAAAGGATGTAAGACAGCCGTCTCGCCAG +
Preference number: 6 (lower is better)
Translates to: TGGKHALMDVSL*NKKDVRQPSRQ
Trigger: CTGGCGAGACGGCTGTCTTACATCCTTTTTGTTCAAGAGCGAGACGTCCATAAGGGCATGTTTGCCACCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 90 bp CAAGAGCGGCAGGTTCGTCTCAGTTGCAGCCTTGACCATCTCGAGTaGACCCTTGTGAATCTGAATGTTCCAGAAGAAGCTGTTGAAGAG +
Preference number: 6 (lower is better)
Translates to: QERQVRLSCSLDHLE*TLVNLNVPEEAVEE
Trigger: CTCTTCAACAGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAGACGAACCTGCCGCTCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS TCA 72 bp GAAACAAGAGCGGCAGGTTCGTCTCAGTTGCAGCCTTaGCCATCTCGAGTTGACCCTTGTGAATCTGAATGT +
Preference number: 6 (lower is better)
Translates to: ETRAAGSSQLQP*PSRVDPCESEC
Trigger: ACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAGACGAACCTGCCGCTCTTGTTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS TCA 72 bp CTCGTGTGGGTGATTGTGACACAGTTCCCCAGAAGCTaGATAGCATGCATGACGACATCTTCTGAATTCCCG +
Preference number: 6 (lower is better)
Translates to: LVWVIVTQFPRS*IACMTTSSEFP
Trigger: CGGGAATTCAGAAGATGTCGTCATGCATGCTATTCAGCTTCTGGGGAACTGTGTCACAATCACCCACACGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 72 bp ATGTTGAGATTATTGCCCGAGGCGATGTACGGCGCCTaGATGTTGTGGCAAAAGAGGATGAAGGTGAGCAAC +
Preference number: 6 (lower is better)
Translates to: MLRLLPEAMYGA*MLWQKRMKVSN
Trigger: GTTGCTCACCTTCATCCTCTTTTGCCACAACATCAAGGCGCCGTACATCGCCTCGGGCAATAATCTCAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS GCA 72 bp CTTCCGGCTCATAAGGCTCTCCTTCCATTTCAGTGTTaGAGATCTGAAGAAGGTAGGTTTGAACCCACAGTC +
Preference number: 6 (lower is better)
Translates to: LPAHKALLPFQC*RSEEGRFEPTV
Trigger: GACTGTGGGTTCAAACCTACCTTCTTCAGATCTGCAACACTGAAATGGAAGGAGAGCCTTATGAGCCGGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236422.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 72 bp GGAAGGCTTCGTCTGCTGGGTTTCTGGACTCGTTACTaGATAGGTCTTGATGTTCATCAGCAACATCATTCG +
Preference number: 6 (lower is better)
Translates to: GRLRLLGFWTRY*IGLDVHQQHHS
Trigger: CGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGACGAAGCCTTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 72 bp CAGGTTCGTCTCAGTTGCAGCCTTGACCATCTCGAGTaGACCCTTGTGAATCTGAATGTTCCAGAAGAAGCT +
Preference number: 6 (lower is better)
Translates to: QVRLSCSLDHLE*TLVNLNVPEEA
Trigger: AGCTTCTTCTGGAACATTCAGATTCACAAGGGTCAACTCGAGATGGTCAAGGCTGCAACTGAGACGAACCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 90 bp AGTTCAACTACATGCCCATGGAGCAACGCTCTGTACAGAATGTCTTaGCGTCCATCTGGGGTTTCATCGAGCCTCCGTCTTATGAAAAAG +
Preference number: 6 (lower is better)
Translates to: SSTTCPWSNALYRMS*RPSGVSSSLRLMKK
Trigger: CTTTTTCATAAGACGGAGGCTCGATGAAACCCCAGATGGACGCAAAGACATTCTGTACAGAGCGTTGCTCCATGGGCATGTAGTTGAACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 90 bp CGTTACTGGATAGGTCTTGATGTTCATCAGCAACATCATTCGGTCTaGAAGGAAGGATCGCTGGTAACAGTGCTTGCTCCAGAGAAAGGG +
Preference number: 6 (lower is better)
Translates to: RYWIGLDVHQQHHSV*KEGSLVTVLAPEKG
Trigger: CCCTTTCTCTGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAGACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS TCA 72 bp ACTGGTGTGTTTACATCGGCCAAGGCTGTATTCCGATaGACTGGGCAGATAAGAAACGTCTATTGTGCCAAC +
Preference number: 6 (lower is better)
Translates to: TGVFTSAKAVFR*TGQIRNVYCAN
Trigger: GTTGGCACAATAGACGTTTCTTATCTGCCCAGTTCATCGGAATACAGCCTTGGCCGATGTAAACACACCAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236422.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS TCA 72 bp TCTGCTGGGTTTCTGGACTCGTTACTGGATAGGTCTTaGTGTTCATCAGCAACATCATTCGGTCTTGAAGGA +
Preference number: 6 (lower is better)
Translates to: SAGFLDSLLDRS*CSSATSFGLEG
Trigger: TCCTTCAAGACCGAATGATGTTGCTGATGAACATCAAGACCTATCCAGTAACGAGTCCAGAAACCCAGCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 72 bp TGTGTTTACATCGGCCAAGGCTGTATTCCGATGAACTaGGCAGATAAGAAACGTCTATTGTGCCAACTGTCA +
Preference number: 6 (lower is better)
Translates to: CVYIGQGCIPMN*ADKKRLLCQLS
Trigger: TGACAGTTGGCACAATAGACGTTTCTTATCTGCCCAGTTCATCGGAATACAGCCTTGGCCGATGTAAACACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236422.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 72 bp ATAGGTCTTGATGTTCATCAGCAACATCATTCGGTCTaGAAGGAAGGATCGCTGGTAACAGTGCTTGCTCCA +
Preference number: 6 (lower is better)
Translates to: IGLDVHQQHHSV*KEGSLVTVLAP
Trigger: TGGAGCAAGCACTGTTACCAGCGATCCTTCCTTCAAGACCGAATGATGTTGCTGATGAACATCAAGACCTAT
46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CAA 72 bp ATACTGGATGAACTTGCCAACTGTCTCATGACAAACTaGGTAAAAAGTCTGGCAGGGCAGAGAAATGGTACC +
Preference number: 6 (lower is better)
Translates to: ILDELANCLMTN*VKSLAGQRNGT
Trigger: GGTACCATTTCTCTGCCCTGCCAGACTTTTTACCAAGTTTGTCATGAGACAGTTGGCAAGTTCATCCAGTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236859.2
ENSMUST00000237146.2
CDS CCA 72 bp TTCATTGATATAAATAACATTCCGCAAACCCAGAGATaGGATACTGGGGTTGAAAAACCTTTCCCAGCTCTG +
Preference number: 6 (lower is better)
Translates to: FIDINNIPQTQR*DTGVEKPFPAL
Trigger: CAGAGCTGGGAAAGGTTTTTCAACCCCAGTATCCCATCTCTGGGTTTGCGGAATGTTATTTATATCAATGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000061856.6
ENSMUST00000235957.2
ENSMUST00000236422.2
ENSMUST00000236859.2
ENSMUST00000237146.2