Pregenerated sensors for GPAA1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022561Ensembl transcript IDs: ENSMUST00000164972.8, ENSMUST00000170121.8, ENSMUST00000172281.8
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGCCGTGGGGGCCGTGGGGCCGGCCAGAGGCCTGCCGCAGCACCATaGGTAGCAGTGTCTGCAAACCCTGCAACGGCCCTTCGAGTGACG | + |
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Preference number: 1 (lower is better) Translates to: GRGGRGAGQRPAAAP*VAVSANPATALRVT Trigger: CGTCACTCGAAGGGCCGTTGCAGGGTTTGCAGACACTGCTACTCATGGTGCTGCGGCAGGCCTCTGGCCGGCCCCACGGCCCCCACGGCC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR TCA 90 bp | GAGGGCCAGACCCATGGCCTGAGAGATCAGCAGGGGTGCCGTAAGTaGGGCCAGGCCCACACCCTGTGTTGGCAAGAGTGGAGTCCCGGG | + |
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Preference number: 1 (lower is better) Translates to: EGQTHGLRDQQGCRK*GQAHTLCWQEWSPG Trigger: CCCGGGACTCCACTCTTGCCAACACAGGGTGTGGGCCTGGCCTCACTTACGGCACCCCTGCTGATCTCTCAGGCCATGGGTCTGGCCCTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 90 bp | TGCGGGAGAAGCTCTGGGTGTAGACCTCCAGCCCTACGGATCGCATaGACCGTTCCAGCCAGGCTACTGGCAGAGCCCCCGGCTTCTTGC | + |
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Preference number: 1 (lower is better) Translates to: CGRSSGCRPPALRIA*TVPARLLAEPPASC Trigger: GCAAGAAGCCGGGGGCTCTGCCAGTAGCCTGGCTGGAACGGTCCATGCGATCCGTAGGGCTGGAGGTCTACACCCAGAGCTTCTCCCGCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 90 bp | AGGCTGGTGACCACGTCGCTGCTCAGCTCCAGAGCTACAGCAGCCTaGATGGCTCCAGCCCTGCCCTGCAGGGGAGATGACTGTATGCCT | + |
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Preference number: 1 (lower is better) Translates to: RLVTTSLLSSRATAA*MAPALPCRGDDCMP Trigger: AGGCATACAGTCATCTCCCCTGCAGGGCAGGGCTGGAGCCATCCAGGCTGCTGTAGCTCTGGAGCTGAGCAGCGACGTGGTCACCAGCCT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR GCA 90 bp | CCAGCGCCAGAAACCAGGCGATCCCGGCCACGTAGCTCAGCACACTaGGAGAGAGTACAGAGTGGGCTCGGAATTAGCCCGACCTGGAAC | + |
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Preference number: 1 (lower is better) Translates to: PAPETRRSRPRSSAH*ERVQSGLGISPTWN Trigger: GTTCCAGGTCGGGCTAATTCCGAGCCCACTCTGTACTCTCTCGCAGTGTGCTGAGCTACGTGGCCGGGATCGCCTGGTTTCTGGCGCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR GCA 90 bp | CTGACACCATATAGCGCTCGTGGGTCTCATCCGGGAAGGGTAGTTTaGGGGAGAAGCTCTGGGTGTAGACCTCCAGCCCTACGGATCGCA | + |
|
Preference number: 1 (lower is better) Translates to: LTPYSARGSHPGRVV*GRSSGCRPPALRIA Trigger: TGCGATCCGTAGGGCTGGAGGTCTACACCCAGAGCTTCTCCCGCAAACTACCCTTCCCGGATGAGACCCACGAGCGCTATATGGTGTCAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR GCA 90 bp | GTTCCTCCACCATGGTGGAGCCCATGGCATTCTCAGACATGTAAGTaGGCTGGGTTAACGGCGGAAAAGCCAGCGCCAGAAACCAGGCGA | + |
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Preference number: 1 (lower is better) Translates to: VPPPWWSPWHSQTCK*AGLTAEKPAPETRR Trigger: TCGCCTGGTTTCTGGCGCTGGCTTTTCCGCCGTTAACCCAGCGCACTTACATGTCTGAGAATGCCATGGGCTCCACCATGGTGGAGGAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 90 bp | TGCCCTCGGAAATGGGCAGCAAGTGCCAACAACAACCCCACAGCCTaGCTATTGGTGGCATCTGGACCACAGGGTACAGTAAGCACCAGG | + |
|
Preference number: 1 (lower is better) Translates to: CPRKWAASANNNPTA*LLVASGPQGTVSTR Trigger: CCTGGTGCTTACTGTACCCTGTGGTCCAGATGCCACCAATAGCCAGGCTGTGGGGTTGTTGTTGGCACTTGCTGCCCATTTCCGAGGGCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 90 bp | AGCTCCGAGCGCGGTCTCCACCTACAAACTGTTCCTCCACCATGGTaGAGCCCATGGCATTCTCAGACATGTAAGTGCGCTGGGTTAACG | + |
|
Preference number: 1 (lower is better) Translates to: SSERGLHLQTVPPPW*SPWHSQTCKCAGLT Trigger: CGTTAACCCAGCGCACTTACATGTCTGAGAATGCCATGGGCTCCACCATGGTGGAGGAACAGTTTGTAGGTGGAGACCGCGCTCGGAGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 90 bp | AGCAAGTGCCAACAACAACCCCACAGCCTGGCTATTGGTGGCATCTaGACCACAGGGTACAGTAAGCACCAGGGACTCGGTACTGGCAGA | + |
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Preference number: 1 (lower is better) Translates to: SKCQQQPHSLAIGGI*TTGYSKHQGLGTGR Trigger: TCTGCCAGTACCGAGTCCCTGGTGCTTACTGTACCCTGTGGTCCAGATGCCACCAATAGCCAGGCTGTGGGGTTGTTGTTGGCACTTGCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 90 bp | CGCGGTCTCCACCTACAAACTGTTCCTCCACCATGGTGGAGCCCATaGCATTCTCAGACATGTAAGTGCGCTGGGTTAACGGCGGAAAAG | + |
|
Preference number: 1 (lower is better) Translates to: RGLHLQTVPPPWWSP*HSQTCKCAGLTAEK Trigger: CTTTTCCGCCGTTAACCCAGCGCACTTACATGTCTGAGAATGCCATGGGCTCCACCATGGTGGAGGAACAGTTTGTAGGTGGAGACCGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 90 bp | CAAAGCTCCGAGCGCGGTCTCCACCTACAAACTGTTCCTCCACCATaGTGGAGCCCATGGCATTCTCAGACATGTAAGTGCGCTGGGTTA | + |
|
Preference number: 1 (lower is better) Translates to: QSSERGLHLQTVPPP*WSPWHSQTCKCAGL Trigger: TAACCCAGCGCACTTACATGTCTGAGAATGCCATGGGCTCCACCATGGTGGAGGAACAGTTTGTAGGTGGAGACCGCGCTCGGAGCTTTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR TCA 90 bp | GTGTGGAAGGGCCAGGCCGGCTACATAAATCGCGAGCAGCGTCAACACAACAGCTCGTGGCTTCCACCATaGCCCAGAGGGTCCAGCGGG | + |
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Preference number: 2 (lower is better) Translates to: VWKGQAGYINREQRQHNSSWLPP*PRGSSG Trigger: CCCGCTGGACCCTCTGGGTCATGGTGGAAGCCACGA...GCTGTTGTGTTGACGCTGCTCGCGATTTATGTAGCCGGCCTGGCCCTTCCACAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR GCA 90 bp | CTACTGGCAGAGCCCCCGGCTTCTTGCGGTGGGCAGCGAAGTCCCGGGCAAAGCGAAATGGGCAGCAAGTaGCAACAACAACCCCACAGC | + |
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Preference number: 2 (lower is better) Translates to: LLAEPPASCGGQRSPGQSEMGSK*QQQPHS Trigger: GCTGTGGGGTTGTTGTTGGCACTTGCTGCCCATTTC...GCTTTGCCCGGGACTTCGCTGCCCACCGCAAGAAGCCGGGGGCTCTGCCAGTAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR CCA 90 bp | GTGTGGAAGGGCCAGGCCGGCTACATAAATCGCGAGCAGCGTCAACACAACAGCGGTACTGGCAGAACGTaGGGCCCGCAGGATGCCATA | + |
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Preference number: 2 (lower is better) Translates to: VWKGQAGYINREQRQHNSGTGRT*GPQDAI Trigger: TATGGCATCCTGCGGGCCCCACGTTCTGCCAGTACC...GCTGTTGTGTTGACGCTGCTCGCGATTTATGTAGCCGGCCTGGCCCTTCCACAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR TCA 90 bp | CGCAGCACCATGAGTAGCAGTGTCTGCAAACCCTGCAACGGCCCTTCGAGTGACTCAAGGTTGGGCAGCTaGCCGTTGAGTCCCTCCACT | + |
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Preference number: 2 (lower is better) Translates to: RSTMSSSVCKPCNGPSSDSRLGS*PLSPST Trigger: AGTGGAGGGACTCAACGGTCAGCTGCCCAACCTTGA...GTCACTCGAAGGGCCGTTGCAGGGTTTGCAGACACTGCTACTCATGGTGCTGCG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR GCA 90 bp | TGTAAGTGCGCTGGGTTAACGGCGGAAAAGCCAGCGCCAGAAACCAGGCGATCCCGAGCCAAGCCTCGGTaGCCAGAAGATCATGGTCTG | + |
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Preference number: 2 (lower is better) Translates to: CKCAGLTAEKPAPETRRSRAKPR*PEDHGL Trigger: CAGACCATGATCTTCTGGGCACCGAGGCTTGGCTCG...GGATCGCCTGGTTTCTGGCGCTGGCTTTTCCGCCGTTAACCCAGCGCACTTACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR GCA 90 bp | CAACCCCACAGCCTGGCTATTGGTGGCATCTGGACCACAGGGTACAGTAAGCACGTGGGGCCCGCAGGATaGCATACACGTTGGTACCTG | + |
|
Preference number: 2 (lower is better) Translates to: QPHSLAIGGIWTTGYSKHVGPAG*HTRWYL Trigger: CAGGTACCAACGTGTATGGCATCCTGCGGGCCCCAC...GTGCTTACTGTACCCTGTGGTCCAGATGCCACCAATAGCCAGGCTGTGGGGTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR TCA 90 bp | CATAAATCGCGAGCAGCGTCAACACAACAGCCTCGGCTTCGGCCACTGGGAAATTCACATCGAGGCTGGTaGCCACGTCGCTGCTCAGCT | + |
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Preference number: 2 (lower is better) Translates to: HKSRAASTQQPRLRPLGNSHRGW*PRRCSA Trigger: AGCTGAGCAGCGACGTGGTCACCAGCCTCGATGTGA...ATTTCCCAGTGGCCGAAGCCGAGGCTGTTGTGTTGACGCTGCTCGCGATTTATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR GCA 90 bp | GTGTGGAAGGGCCAGGCCGGCTACATAAATCGCGAGCAGCGTCAACACAACAGCCGTAGCTCAGCACACTaGGAGAGAGTACAGAGTGGG | + |
|
Preference number: 2 (lower is better) Translates to: VWKGQAGYINREQRQHNSRSSAH*ERVQSG Trigger: CCCACTCTGTACTCTCTCGCAGTGTGCTGAGCTACG...GCTGTTGTGTTGACGCTGCTCGCGATTTATGTAGCCGGCCTGGCCCTTCCACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR CCA 90 bp | GTGTGGAAGGGCCAGGCCGGCTACATAAATCGCGAGCAGCGTCAACACAACAGCGCATGTAGAGTCCGATaGAGACAAAGCGGGAGAGGG | + |
|
Preference number: 2 (lower is better) Translates to: VWKGQAGYINREQRQHNSACRVR*RQSGRG Trigger: CCCTCTCCCGCTTTGTCTCCATCGGACTCTACATGC...GCTGTTGTGTTGACGCTGCTCGCGATTTATGTAGCCGGCCTGGCCCTTCCACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR CCA 90 bp | CGCAGCACCATGAGTAGCAGTGTCTGCAAACCCTGCAACGGCCCTTCGAGTGACCCATGGTGGAGCCCATaGCATTCTCAGACATGTAAG | + |
|
Preference number: 2 (lower is better) Translates to: RSTMSSSVCKPCNGPSSDPWWSP*HSQTCK Trigger: CTTACATGTCTGAGAATGCCATGGGCTCCACCATGG...GTCACTCGAAGGGCCGTTGCAGGGTTTGCAGACACTGCTACTCATGGTGCTGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR CCA 90 bp | CCATATAGCGCTCGTGGGTCTCATCCGGGAAGGGTAGTTTGCGGGAGAAGCTCTACTGTTCCTCCACCATaGTGGAGCCCATGGCATTCT | + |
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Preference number: 2 (lower is better) Translates to: PYSARGSHPGRVVCGRSSTVPPP*WSPWHS Trigger: AGAATGCCATGGGCTCCACCATGGTGGAGGAACAGT...AGAGCTTCTCCCGCAAACTACCCTTCCCGGATGAGACCCACGAGCGCTATATGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR CCA 90 bp | CATAAATCGCGAGCAGCGTCAACACAACAGCCTCGGCTTCGGCCACTGGGAAATAACAACCCCACAGCCTaGCTATTGGTGGCATCTGGA | + |
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Preference number: 2 (lower is better) Translates to: HKSRAASTQQPRLRPLGNNNPTA*LLVASG Trigger: TCCAGATGCCACCAATAGCCAGGCTGTGGGGTTGTT...ATTTCCCAGTGGCCGAAGCCGAGGCTGTTGTGTTGACGCTGCTCGCGATTTATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR CCA 90 bp | CGCAGCACCATGAGTAGCAGTGTCTGCAAACCCTGCAACGGCCCTTCGAGTGACGTGCCCAGAAGATCATaGTCTGTTACCAGGAAAATG | + |
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Preference number: 2 (lower is better) Translates to: RSTMSSSVCKPCNGPSSDVPRRS*SVTRKM Trigger: CATTTTCCTGGTAACAGACCATGATCTTCTGGGCAC...GTCACTCGAAGGGCCGTTGCAGGGTTTGCAGACACTGCTACTCATGGTGCTGCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR TCA 90 bp | GCCTGTAACATTAATGTCATGGTAGGCTTCGAGCCAAGCCTCGGTGCCCAGAAGCTGTTACCAGGAAAATaGTATCTTTGGCCCAGTAAA | + |
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Preference number: 2 (lower is better) Translates to: ACNINVMVGFEPSLGAQKLLPGK*YLWPSK Trigger: TTTACTGGGCCAAAGATATCATTTTCCTGGTAACAG...CTTCTGGGCACCGAGGCTTGGCTCGAAGCCTACCATGACATTAATGTTACAGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000164972.8 ENSMUST00000170121.8 |
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| 3UTR CCA 72 bp | AGCCAGGCTACTGGCAGAGCCCCCGGCTTCTTGCGGTaGGCAGCGAAGTCCCGGGCAAAGCTCCGAGCGCGG | + |
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Preference number: 3 (lower is better) Translates to: SQATGRAPGFLR*AAKSRAKLRAR Trigger: CCGCGCTCGGAGCTTTGCCCGGGACTTCGCTGCCCACCGCAAGAAGCCGGGGGCTCTGCCAGTAGCCTGGCT 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR TCA 72 bp | GGCCGTGGGGCCGGCCAGAGGCCTGCCGCAGCACCATaGGTAGCAGTGTCTGCAAACCCTGCAACGGCCCTT | + |
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Preference number: 3 (lower is better) Translates to: GRGAGQRPAAAP*VAVSANPATAL Trigger: AAGGGCCGTTGCAGGGTTTGCAGACACTGCTACTCATGGTGCTGCGGCAGGCCTCTGGCCGGCCCCACGGCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 72 bp | CCCTACGGATCGCATGGACCGTTCCAGCCAGGCTACTaGCAGAGCCCCCGGCTTCTTGCGGTGGGCAGCGAA | + |
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Preference number: 3 (lower is better) Translates to: PYGSHGPFQPGY*QSPRLLAVGSE Trigger: TTCGCTGCCCACCGCAAGAAGCCGGGGGCTCTGCCAGTAGCCTGGCTGGAACGGTCCATGCGATCCGTAGGG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 72 bp | AGCTCTGGGTGTAGACCTCCAGCCCTACGGATCGCATaGACCGTTCCAGCCAGGCTACTGGCAGAGCCCCCG | + |
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Preference number: 3 (lower is better) Translates to: SSGCRPPALRIA*TVPARLLAEPP Trigger: CGGGGGCTCTGCCAGTAGCCTGGCTGGAACGGTCCATGCGATCCGTAGGGCTGGAGGTCTACACCCAGAGCT 65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 72 bp | ACCACGTCGCTGCTCAGCTCCAGAGCTACAGCAGCCTaGATGGCTCCAGCCCTGCCCTGCAGGGGAGATGAC | + |
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Preference number: 3 (lower is better) Translates to: TTSLLSSRATAA*MAPALPCRGDD Trigger: GTCATCTCCCCTGCAGGGCAGGGCTGGAGCCATCCAGGCTGCTGTAGCTCTGGAGCTGAGCAGCGACGTGGT 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR TCA 72 bp | ACCCATGGCCTGAGAGATCAGCAGGGGTGCCGTAAGTaGGGCCAGGCCCACACCCTGTGTTGGCAAGAGTGG | + |
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Preference number: 3 (lower is better) Translates to: THGLRDQQGCRK*GQAHTLCWQEW Trigger: CCACTCTTGCCAACACAGGGTGTGGGCCTGGCCTCACTTACGGCACCCCTGCTGATCTCTCAGGCCATGGGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR GCA 72 bp | CCAGAGGCCTGCCGCAGCACCATGAGTAGCAGTGTCTaGAAACCCTGCAACGGCCCTTCGAGTGACGTCCAG | + |
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Preference number: 3 (lower is better) Translates to: PEACRSTMSSSV*KPCNGPSSDVQ Trigger: CTGGACGTCACTCGAAGGGCCGTTGCAGGGTTTGCAGACACTGCTACTCATGGTGCTGCGGCAGGCCTCTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR GCA 72 bp | GAAACCAGGCGATCCCGGCCACGTAGCTCAGCACACTaGGAGAGAGTACAGAGTGGGCTCGGAATTAGCCCG | + |
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Preference number: 3 (lower is better) Translates to: ETRRSRPRSSAH*ERVQSGLGISP Trigger: CGGGCTAATTCCGAGCCCACTCTGTACTCTCTCGCAGTGTGCTGAGCTACGTGGCCGGGATCGCCTGGTTTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR GCA 72 bp | GGGACTCGGTACTGGCAGAACGTGGGGCCCGCAGGATaGCATACACGTTGGTACCTGACACCATATAGCGCT | + |
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Preference number: 3 (lower is better) Translates to: GTRYWQNVGPAG*HTRWYLTPYSA Trigger: AGCGCTATATGGTGTCAGGTACCAACGTGTATGGCATCCTGCGGGCCCCACGTTCTGCCAGTACCGAGTCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 72 bp | TGGCAGAACGTGGGGCCCGCAGGATGCCATACACGTTaGTACCTGACACCATATAGCGCTCGTGGGTCTCAT | + |
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Preference number: 3 (lower is better) Translates to: WQNVGPAGCHTR*YLTPYSARGSH Trigger: ATGAGACCCACGAGCGCTATATGGTGTCAGGTACCAACGTGTATGGCATCCTGCGGGCCCCACGTTCTGCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR GCA 72 bp | CCATGGTGGAGCCCATGGCATTCTCAGACATGTAAGTaGGCTGGGTTAACGGCGGAAAAGCCAGCGCCAGAA | + |
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Preference number: 3 (lower is better) Translates to: PWWSPWHSQTCK*AGLTAEKPAPE Trigger: TTCTGGCGCTGGCTTTTCCGCCGTTAACCCAGCGCACTTACATGTCTGAGAATGCCATGGGCTCCACCATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR GCA 72 bp | AGAGCTACAGCAGCCTGGATGGCTCCAGCCCTGCCCTaGAGGGGAGATGACTGTATGCCTGTAACATTAATG | + |
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Preference number: 3 (lower is better) Translates to: RATAAWMAPALP*RGDDCMPVTLM Trigger: CATTAATGTTACAGGCATACAGTCATCTCCCCTGCAGGGCAGGGCTGGAGCCATCCAGGCTGCTGTAGCTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 72 bp | GAGCGCGGTCTCCACCTACAAACTGTTCCTCCACCATaGTGGAGCCCATGGCATTCTCAGACATGTAAGTGC | + |
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Preference number: 3 (lower is better) Translates to: ERGLHLQTVPPP*WSPWHSQTCKC Trigger: GCACTTACATGTCTGAGAATGCCATGGGCTCCACCATGGTGGAGGAACAGTTTGTAGGTGGAGACCGCGCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 72 bp | AAGCAGCCAGCAAGGATACAGACCCAAGGCCAGTATTaGGAAGAGGAGGGCGCCATAGGTGTAGTGTTCCAG | + |
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Preference number: 3 (lower is better) Translates to: KQPARIQTQGQY*EEEGAIGVVFQ Trigger: CTGGAACACTACACCTATGGCGCCCTCCTCTTCCCAATACTGGCCTTGGGTCTGTATCCTTGCTGGCTGCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR TCA 72 bp | AACACAACAGCCTCGGCTTCGGCCACTGGGAAATGCTaGGTAGCTAAATGTTGGCCCAGCACAGGCAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: NTTASASATGKC*VAKCWPSTGRK Trigger: TTTCCTGCCTGTGCTGGGCCAACATTTAGCTACTCAGCATTTCCCAGTGGCCGAAGCCGAGGCTGTTGTGTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 72 bp | AAATGGGCAGCAAGTGCCAACAACAACCCCACAGCCTaGCTATTGGTGGCATCTGGACCACAGGGTACAGTA | + |
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Preference number: 3 (lower is better) Translates to: KWAASANNNPTA*LLVASGPQGTV Trigger: TACTGTACCCTGTGGTCCAGATGCCACCAATAGCCAGGCTGTGGGGTTGTTGTTGGCACTTGCTGCCCATTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR CCA 72 bp | CACCTACAAACTGTTCCTCCACCATGGTGGAGCCCATaGCATTCTCAGACATGTAAGTGCGCTGGGTTAACG | + |
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Preference number: 3 (lower is better) Translates to: HLQTVPPPWWSP*HSQTCKCAGLT Trigger: CGTTAACCCAGCGCACTTACATGTCTGAGAATGCCATGGGCTCCACCATGGTGGAGGAACAGTTTGTAGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| 3UTR-3UTR CAA 90 bp | CATAAATCGCGAGCAGCGTCAACACAACAGCCTCGGCTTCGGCCACTGGGAAATGTCGCCAAATCATACTaGTATTGGCGGAAGCTATTG | + |
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Preference number: 3 (lower is better) Translates to: HKSRAASTQQPRLRPLGNVAKSY*YWRKLL Trigger: CAATAGCTTCCGCCAATACAAGTATGATTTGGCGAC...ATTTCCCAGTGGCCGAAGCCGAGGCTGTTGTGTTGACGCTGCTCGCGATTTATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| CDS-3UTR CCA 90 bp | TTCCAGCCAGGCTACTGGCAGAGCCCCCGGCTTCTTGCGGTGGGCAGCGAAGTCGCCAAAGCCGGGCAGTaGCAGCACACGCTGTTAATC | + |
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Preference number: 4 (lower is better) Translates to: FQPGYWQSPRLLAVGSEVAKAGQ*QHTLLI Trigger: GATTAACAGCGTGTGCTGCCACTGCCCGGCTTTGGC...GACTTCGCTGCCCACCGCAAGAAGCCGGGGGCTCTGCCAGTAGCCTGGCTGGAA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| CDS-3UTR CCA 90 bp | CTTTGGCCCAGTAAATCTGCCCTCGGAAATGGGCAGCAAGTGCCAACAACAACCCCCGGCTTCTTGCGGTaGGCAGCGAAGTCCCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: LWPSKSALGNGQQVPTTTPGFLR*AAKSRA Trigger: TGCCCGGGACTTCGCTGCCCACCGCAAGAAGCCGGG...GGTTGTTGTTGGCACTTGCTGCCCATTTCCGAGGGCAGATTTACTGGGCCAAAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000170121.8 |
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| CDS-3UTR GCA 90 bp | TGTAACATTAATGTCATGGTAGGCTTCGAGCCAAGCCTCGGTGCCCAGAAGATCGTGGGGCCCGCAGGATaGCATACACGTTGGTACCTG | + |
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Preference number: 4 (lower is better) Translates to: CNINVMVGFEPSLGAQKIVGPAG*HTRWYL Trigger: CAGGTACCAACGTGTATGGCATCCTGCGGGCCCCAC...GATCTTCTGGGCACCGAGGCTTGGCTCGAAGCCTACCATGACATTAATGTTACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170121.8 |
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| 3UTR CAA 72 bp | AAAGCAGCCAGCAAGGATACAGACCCAAGGCCAGTATaGGGAAGAGGAGGGCGCCATAGGTGTAGTGTTCCA | + |
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Preference number: 4 (lower is better) Translates to: KAASKDTDPRPV*GRGGRHRCSVP Trigger: TGGAACACTACACCTATGGCGCCCTCCTCTTCCCAATACTGGCCTTGGGTCTGTATCCTTGCTGGCTGCTTT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| CDS-3UTR GCA 90 bp | TGTAACATTAATGTCATGGTAGGCTTCGAGCCAAGCCTCGGTGCCCAGAAGATCCCGGGAAGGGTAGTTTaGGGGAGAAGCTCTGGGTGT | + |
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Preference number: 4 (lower is better) Translates to: CNINVMVGFEPSLGAQKIPGRVV*GRSSGC Trigger: ACACCCAGAGCTTCTCCCGCAAACTACCCTTCCCGG...GATCTTCTGGGCACCGAGGCTTGGCTCGAAGCCTACCATGACATTAATGTTACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170121.8 |
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| CDS-3UTR CCA 90 bp | GCCCAGAAGATCATGGTCTGTTACCAGGAAAATGATATCTTTGGCCCAGTAAATGGTACTGGCAGAACGTaGGGCCCGCAGGATGCCATA | + |
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Preference number: 4 (lower is better) Translates to: AQKIMVCYQENDIFGPVNGTGRT*GPQDAI Trigger: TATGGCATCCTGCGGGCCCCACGTTCTGCCAGTACC...ATTTACTGGGCCAAAGATATCATTTTCCTGGTAACAGACCATGATCTTCTGGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170121.8 |
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| CDS-3UTR GCA 90 bp | GCCCAGAAGATCATGGTCTGTTACCAGGAAAATGATATCTTTGGCCCAGTAAATCAGGACAACCAGGGCTaGACAGAGAAATCCAGAGAG | + |
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Preference number: 4 (lower is better) Translates to: AQKIMVCYQENDIFGPVNQDNQG*TEKSRE Trigger: CTCTCTGGATTTCTCTGTGCAGCCCTGGTTGTCCTG...ATTTACTGGGCCAAAGATATCATTTTCCTGGTAACAGACCATGATCTTCTGGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000164972.8 |
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| CDS CCA 90 bp | GACCTCCAGCCCTACGGATCGCATGGACCGTTCCAGCCAGGCTACTaGCAGAGCCCAGAGAGGTGTGTTAAGGCGCAAGACGATGCGGGC | + |
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Preference number: 5 (lower is better) Translates to: DLQPYGSHGPFQPGY*QSPERCVKAQDDAG Trigger: GCCCGCATCGTCTTGCGCCTTAACACACCTCTCTGGGCTCTGCCAGTAGCCTGGCTGGAACGGTCCATGCGATCCGTAGGGCTGGAGGTC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172281.8 |
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| CDS CCA 90 bp | TGCGGGAGAAGCTCTGGGTGTAGACCTCCAGCCCTACGGATCGCATaGACCGTTCCAGCCAGGCTACTGGCAGAGCCCAGAGAGGTGTGT | + |
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Preference number: 5 (lower is better) Translates to: CGRSSGCRPPALRIA*TVPARLLAEPREVC Trigger: ACACACCTCTCTGGGCTCTGCCAGTAGCCTGGCTGGAACGGTCCATGCGATCCGTAGGGCTGGAGGTCTACACCCAGAGCTTCTCCCGCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172281.8 |
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| CDS GCA 90 bp | CCCTCAATACATAGCGCTCGTGGGTCTCATCCGGGAAGGGTAGTTTaGGGGAGAAGCTCTGGGTGTAGACCTCCAGCCCTACGGATCGCA | + |
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Preference number: 5 (lower is better) Translates to: PSIHSARGSHPGRVV*GRSSGCRPPALRIA Trigger: TGCGATCCGTAGGGCTGGAGGTCTACACCCAGAGCTTCTCCCGCAAACTACCCTTCCCGGATGAGACCCACGAGCGCTATGTATTGAGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170121.8 |
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| CDS CCA 72 bp | AGCTCTGGGTGTAGACCTCCAGCCCTACGGATCGCATaGACCGTTCCAGCCAGGCTACTGGCAGAGCCCAGA | + |
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Preference number: 6 (lower is better) Translates to: SSGCRPPALRIA*TVPARLLAEPR Trigger: TCTGGGCTCTGCCAGTAGCCTGGCTGGAACGGTCCATGCGATCCGTAGGGCTGGAGGTCTACACCCAGAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172281.8 |
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| CDS GCA 72 bp | GGGACTCGGTACTGGCAGAACGTGGGGCCCGCAGGATaGCATACACGTTGGTACCTGACACCATCCCTTTCC | + |
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Preference number: 6 (lower is better) Translates to: GTRYWQNVGPAG*HTRWYLTPSLS Trigger: GGAAAGGGATGGTGTCAGGTACCAACGTGTATGGCATCCTGCGGGCCCCACGTTCTGCCAGTACCGAGTCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170121.8 |
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| CDS CCA 72 bp | CCCTACGGATCGCATGGACCGTTCCAGCCAGGCTACTaGCAGAGCCCAGAGAGGTGTGTTAAGGCGCAAGAC | + |
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Preference number: 6 (lower is better) Translates to: PYGSHGPFQPGY*QSPERCVKAQD Trigger: GTCTTGCGCCTTAACACACCTCTCTGGGCTCTGCCAGTAGCCTGGCTGGAACGGTCCATGCGATCCGTAGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172281.8 |
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| CDS CAA 90 bp | GACTCGGTACTGGCAGAACGTGGGGCCCGCAGGATGCCATACACGTaGGTACCTGACACCATCCCTTTCCCTCAATACATAGCGCTCGTG | + |
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Preference number: 6 (lower is better) Translates to: DSVLAERGARRMPYT*VPDTIPFPQYIALV Trigger: CACGAGCGCTATGTATTGAGGGAAAGGGATGGTGTCAGGTACCAACGTGTATGGCATCCTGCGGGCCCCACGTTCTGCCAGTACCGAGTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170121.8 |
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| CDS TCA 72 bp | ACGTGGGGCCCGCAGGATGCCATACACGTTGGTACCTaGCACCATCCCTTTCCCTCAATACATAGCGCTCGT | + |
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Preference number: 6 (lower is better) Translates to: TWGPQDAIHVGT*HHPFPSIHSAR Trigger: ACGAGCGCTATGTATTGAGGGAAAGGGATGGTGTCAGGTACCAACGTGTATGGCATCCTGCGGGCCCCACGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170121.8 |
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| CDS CAA 72 bp | CTGGCAGAACGTGGGGCCCGCAGGATGCCATACACGTaGGTACCTGACACCATCCCTTTCCCTCAATACATA | + |
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Preference number: 6 (lower is better) Translates to: LAERGARRMPYT*VPDTIPFPQYI Trigger: TATGTATTGAGGGAAAGGGATGGTGTCAGGTACCAACGTGTATGGCATCCTGCGGGCCCCACGTTCTGCCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170121.8 |
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