RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GOT1L1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039720

Ensembl transcript IDs: ENSMUST00000038174.8

Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR TCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGCTCTGTCGGGTGATGTaGTCCCACGACCCAGGGGTC +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGLCRVM*SHDPGV
Trigger: GACCCCTGGGTCGTGGGATCACATCACCCGACAGAG...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR TCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGGCAGGTGCTGGTTGCTaGGGGCAGCCACTACTAGGA +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGAGAGC*GQPLLG
Trigger: TCCTAGTAGTGGCTGCCCTCAGCAACCAGCACCTGC...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR GCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGAGGACACACAGCAGGTaGTGGTTGCTGAGGGCAGCC +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGRTHSR*WLLRAA
Trigger: GGCTGCCCTCAGCAACCAGCACCTGCTGTGTGTCCT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR TCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGTGCAGAGGATGGAGGTaGTTATCCGAGCACCCGTGG +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGCRGWR*LSEHPW
Trigger: CCACGGGTGCTCGGATAATCACCTCCATCCTCTGCA...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR GCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGCAGAGAGGGGTCCTCTaGAATCTGCAGGCGGGTCTT +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGQRGVL*NLQAGL
Trigger: AAGACCCGCCTGCAGATTGCAGAGGACCCCTCTCTG...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR GCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGTGCAGGCGGGTCTTGTaGACCACAAGAGAAACCCAG +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGCRRVL*TTRETQ
Trigger: CTGGGTTTCTCTTGTGGTGCACAAGACCCGCCTGCA...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR TCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGAGAAGACTGGATGAATaGTTTCAGGCCCACCAGGGG +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGRRLDE*FQAHQG
Trigger: CCCCTGGTGGGCCTGAAATCATTCATCCAGTCTTCT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGAGAGAAACCCAGGGATaGCCTTCTTCGGTCATGCAG +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGRETQG*PSSVMQ
Trigger: CTGCATGACCGAAGAAGGCCATCCCTGGGTTTCTCT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGCTTCCACGAACATGCTaGGGTCTGAGCAGAGATCAC +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGLPRTC*GLSRDH
Trigger: GTGATCTCTGCTCAGACCCCAGCATGTTCGTGGAAG...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR TCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGCCAGAGAAGACTGGATaGATGATTTCAGGCCCACCA +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGPEKTG*MISGPP
Trigger: TGGTGGGCCTGAAATCATTCATCCAGTCTTCTCTGG...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR GCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGGCAATGGCTTCGCTGTaGTTTCCAAAGAGGAGTTCC +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGAMASL*FPKRSS
Trigger: GGAACTCCTCTTTGGAAAGCACAGCGAAGCCATTGC...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGCCCTTTTCTCCGCAATaGCTTCGCTGTGCTTTCCAA +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGPFSPQ*LRCAFQ
Trigger: TTGGAAAGCACAGCGAAGCCATTGCGGAGAAAAGGG...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGCCTCGAGGTCACCAGTaGATAAACCTTGACAGGGAA +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGPRGHQ*INLDRE
Trigger: TTCCCTGTCAAGGTTTATCCACTGGTGACCTCGAGG...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR GCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGTGGACAGAGATTGGCTaGAGAAGAACTCCAAGCCTA +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGWTEIG*RRTPSL
Trigger: TAGGCTTGGAGTTCTTCTGCAGCCAATCTCTGTCCA...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR GCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGAGATCTTTAGTAAGCTaGCTTCTAGCTTCTGGGCTG +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGRSLVS*LLASGL
Trigger: CAGCCCAGAAGCTAGAAGGCAGCTTACTAAAGATCT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGAGTTCCAGAGAAGACTaGATGAATGATTTCAGGCCC +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGSSRED*MNDFRP
Trigger: GGGCCTGAAATCATTCATCCAGTCTTCTCTGGAACT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGATAAAGCCCATGTCCTaGAAGATGAGTCCACACTGT +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGIKPMS*KMSPHC
Trigger: ACAGTGTGGACTCATCTTCCAGGACATGGGCTTTAT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGTTCTTGGACAGAGATTaGCTGCAGAAGAACTCCAAG +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGFLDRD*LQKNSK
Trigger: CTTGGAGTTCTTCTGCAGCCAATCTCTGTCCAAGAA...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR TCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGCCACACTGTTCTTTTTaGCATGAGACGATACAAACG +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGPHCSF*HETIQT
Trigger: CGTTTGTATCGTCTCATGTCAAAAAGAACAGTGTGG...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR TCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGATCAGTTTCGTCCACTaGTTCTGTGTGAACTTGCAA +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGISFVH*FCVNLQ
Trigger: TTGCAAGTTCACACAGAATCAGTGGACGAAACTGAT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR TCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGCCAGTGGATAAACCTTaGCAGGGAATGTCAAAGAAT +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGPVDKP*QGMSKN
Trigger: ATTCTTTGACATTCCCTGTCAAGGTTTATCCACTGG...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR GCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGACACCTTTGAGACTCTaGTTCCATTCTCCAAACAGA +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGTPLRL*FHSPNR
Trigger: TCTGTTTGGAGAATGGAAGCAGAGTCTCAAAGGTGT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR TCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGAGATATGTTTCTTCTTaGCCAGAAACTCCACCTGTT +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGRYVSS*PETPPV
Trigger: AACAGGTGGAGTTTCTGGTCAAGAAGAAACATATCT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGAAATGCCAAAATTCTTaGACAGAGATTGGCTGCAGA +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGKCQNS*TEIGCR
Trigger: TCTGCAGCCAATCTCTGTCCAAGAATTTTGGCATTT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR GCA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGAAGAATGGGAATATCTaGTTGCTCTTAATGATGGAC +
Preference number: 4 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGKNGNI*LLLMMD
Trigger: GTCCATCATTAAGAGCAAGCAGATATTCCCATTCTT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS GCA 90 bp CAGGCCCACCAGGGGCAAGTACTCATAGTCCAGAGAGGGGTCCTCTaGAATCTGCAGGCGGGTCTTGTGCACCACAAGAGAAACCCAGGG +
Preference number: 5 (lower is better)
Translates to: QAHQGQVLIVQRGVL*NLQAGLVHHKRNPG
Trigger: CCCTGGGTTTCTCTTGTGGTGCACAAGACCCGCCTGCAGATTGCAGAGGACCCCTCTCTGGACTATGAGTACTTGCCCCTGGTGGGCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS TCA 90 bp TCTGCTTCCATTCTCCAAACAGAGCAGGGTTGCAGAGGATGGAGGTaGTTATCCGAGCACCCGTGGCAGGAGGGTTTCCCCACAGGGCCT +
Preference number: 5 (lower is better)
Translates to: SASILQTEQGCRGWR*LSEHPWQEGFPTGP
Trigger: AGGCCCTGTGGGGAAACCCTCCTGCCACGGGTGCTCGGATAATCACCTCCATCCTCTGCAACCCTGCTCTGTTTGGAGAATGGAAGCAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CCA 90 bp CACTCTCACCAACGATGTGCACACCCCCAACCCTTTTCTCCGCAATaGCTTCGCTGTGCTTTCCAAAGAGGAGTTCCAGAGAAGACTGGA +
Preference number: 5 (lower is better)
Translates to: HSHQRCAHPQPFSPQ*LRCAFQRGVPEKTG
Trigger: TCCAGTCTTCTCTGGAACTCCTCTTTGGAAAGCACAGCGAAGCCATTGCGGAGAAAAGGGTTGGGGGTGTGCACATCGTTGGTGAGAGTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CCA 90 bp TCAGTGATGTTCCCAATCACAAGGATGCTGCCGACCGGGATATGCTaGAGTACTTCCACGAACATGCTGGGGTCTGAGCAGAGATCACTG +
Preference number: 5 (lower is better)
Translates to: SVMFPITRMLPTGIC*STSTNMLGSEQRSL
Trigger: CAGTGATCTCTGCTCAGACCCCAGCATGTTCGTGGAAGTACTCCAGCATATCCCGGTCGGCAGCATCCTTGTGATTGGGAACATCACTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS GCA 90 bp CAATCAGTGATGTTCCCAATCACAAGGATGCTGCCGACCGGGATATaGTGGAGTACTTCCACGAACATGCTGGGGTCTGAGCAGAGATCA +
Preference number: 5 (lower is better)
Translates to: QSVMFPITRMLPTGI*WSTSTNMLGSEQRS
Trigger: TGATCTCTGCTCAGACCCCAGCATGTTCGTGGAAGTACTCCAGCATATCCCGGTCGGCAGCATCCTTGTGATTGGGAACATCACTGATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS GCA 90 bp TCTTGTGCACCACAAGAGAAACCCAGGGATGGCCTTCTTCGGTCATaGAGACTTTGTAGGCCAGGAACAACTTGCTGGGATAGCCATCTT +
Preference number: 5 (lower is better)
Translates to: SCAPQEKPRDGLLRS*RLCRPGTTCWDSHL
Trigger: AAGATGGCTATCCCAGCAAGTTGTTCCTGGCCTACAAAGTCTGCATGACCGAAGAAGGCCATCCCTGGGTTTCTCTTGTGGTGCACAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS TCA 90 bp ACGATACAAACGATTTTCACATTCTTTCGCCACGTCTTGAGGAACTaGGCCCCAAGCTGGAAGGCTCCACTCTCACCAACGATGTGCACA +
Preference number: 5 (lower is better)
Translates to: TIQTIFTFFRHVLRN*APSWKAPLSPTMCT
Trigger: TGTGCACATCGTTGGTGAGAGTGGAGCCTTCCAGCTTGGGGCTCAGTTCCTCAAGACGTGGCGAAAGAATGTGAAAATCGTTTGTATCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS TCA 90 bp GACATGAGACGATACAAACGATTTTCACATTCTTTCGCCACGTCTTaGGGAACTGAGCCCCAAGCTGGAAGGCTCCACTCTCACCAACGA +
Preference number: 5 (lower is better)
Translates to: DMRRYKRFSHSFATS*GTEPQAGRLHSHQR
Trigger: TCGTTGGTGAGAGTGGAGCCTTCCAGCTTGGGGCTCAGTTCCTCAAGACGTGGCGAAAGAATGTGAAAATCGTTTGTATCGTCTCATGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CAA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGCACAGCAGGTGCTGGTaGCTGAGGGCAGCCACTACT +
Preference number: 5 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGHSRCW*LRAATT
Trigger: AGTAGTGGCTGCCCTCAGCAACCAGCACCTGCTGTG...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CAA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGCCAAACAGAGCAGGGTaGCAGAGGATGGAGGTGATT +
Preference number: 5 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGPNRAG*QRMEVI
Trigger: AATCACCTCCATCCTCTGCAACCCTGCTCTGTTTGG...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CCA 90 bp TGCAGAAGAACTCCAAGCCTAGGGACACAAAGTACTGTAAGATTTTaGTATCTTCCTCGAGGTCACCAGTGGATAAACCTTGACAGGGAA +
Preference number: 5 (lower is better)
Translates to: CRRTPSLGTQSTVRF*YLPRGHQWINLDRE
Trigger: TTCCCTGTCAAGGTTTATCCACTGGTGACCTCGAGGAAGATACCAAAATCTTACAGTACTTTGTGTCCCTAGGCTTGGAGTTCTTCTGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS TCA 90 bp AAAGCCCATGTCCTGGAAGATGAGTCCACACTGTTCTTTTTGACATaGGACGATACAAACGATTTTCACATTCTTTCGCCACGTCTTGAG +
Preference number: 5 (lower is better)
Translates to: KAHVLEDESTLFFLT*DDTNDFHILSPRLE
Trigger: CTCAAGACGTGGCGAAAGAATGTGAAAATCGTTTGTATCGTCTCATGTCAAAAAGAACAGTGTGGACTCATCTTCCAGGACATGGGCTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS TCA 90 bp GGGAATATCTGCTTGCTCTTAATGATGGACATCAGTTTCGTCCACTaGTTCTGTGTGAACTTGCAATCAGTGATGTTCCCAATCACAAGG +
Preference number: 5 (lower is better)
Translates to: GNICLLLMMDISFVH*FCVNLQSVMFPITR
Trigger: CCTTGTGATTGGGAACATCACTGATTGCAAGTTCACACAGAATCAGTGGACGAAACTGATGTCCATCATTAAGAGCAAGCAGATATTCCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CAA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGATTCTTGGACAGAGATaGGCTGCAGAAGAACTCCAA +
Preference number: 5 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGILGQR*AAEELQ
Trigger: TTGGAGTTCTTCTGCAGCCAATCTCTGTCCAAGAAT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS TCA 90 bp ACTATAAAGCCCATGTCCTGGAAGATGAGTCCACACTGTTCTTTTTaGCATGAGACGATACAAACGATTTTCACATTCTTTCGCCACGTC +
Preference number: 5 (lower is better)
Translates to: TIKPMSWKMSPHCSF*HETIQTIFTFFRHV
Trigger: GACGTGGCGAAAGAATGTGAAAATCGTTTGTATCGTCTCATGTCAAAAAGAACAGTGTGGACTCATCTTCCAGGACATGGGCTTTATAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS GCA 90 bp CCACTCCTTCATCATAAATGCCAAAATTCTTGGACAGAGATTGGCTaGAGAAGAACTCCAAGCCTAGGGACACAAAGTACTGTAAGATTT +
Preference number: 5 (lower is better)
Translates to: PLLHHKCQNSWTEIG*RRTPSLGTQSTVRF
Trigger: AAATCTTACAGTACTTTGTGTCCCTAGGCTTGGAGTTCTTCTGCAGCCAATCTCTGTCCAAGAATTTTGGCATTTATGATGAAGGAGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CAA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGTCTATATTCCTGGCATaGATGCAGGTGAAGTTGATC +
Preference number: 5 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGSIFLA*MQVKLI
Trigger: GATCAACTTCACCTGCATCAATGCCAGGAATATAGA...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS TCA 90 bp TGTAAGATTTTGGTATCTTCCTCGAGGTCACCAGTGGATAAACCTTaGCAGGGAATGTCAAAGAATGGGAATATCTGCTTGCTCTTAATG +
Preference number: 5 (lower is better)
Translates to: CKILVSSSRSPVDKP*QGMSKNGNICLLLM
Trigger: CATTAAGAGCAAGCAGATATTCCCATTCTTTGACATTCCCTGTCAAGGTTTATCCACTGGTGACCTCGAGGAAGATACCAAAATCTTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CCA 90 bp ACACAAAGTACTGTAAGATTTTGGTATCTTCCTCGAGGTCACCAGTaGATAAACCTTGACAGGGAATGTCAAAGAATGGGAATATCTGCT +
Preference number: 5 (lower is better)
Translates to: TQSTVRFWYLPRGHQ*INLDRECQRMGISA
Trigger: AGCAGATATTCCCATTCTTTGACATTCCCTGTCAAGGTTTATCCACTGGTGACCTCGAGGAAGATACCAAAATCTTACAGTACTTTGTGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS-3UTR CAA 90 bp TCCTCCAGGATTTTTATTTTCAAAGACAGCGTAAAGCTTTCGTTCCAGTCAGGGAATGGGAATATCTGCTaGCTCTTAATGATGGACATC +
Preference number: 5 (lower is better)
Translates to: SSRIFIFKDSVKLSFQSGNGNIC*LLMMDI
Trigger: GATGTCCATCATTAAGAGCAAGCAGATATTCCCATT...CCCTGACTGGAACGAAAGCTTTACGCTGTCTTTGAAAATAAAAATCCTGGAGGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CAA 72 bp TCCAGAGAGGGGTCCTCTGCAATCTGCAGGCGGGTCTaGTGCACCACAAGAGAAACCCAGGGATGGCCTTCT +
Preference number: 6 (lower is better)
Translates to: SREGSSAICRRV*CTTRETQGWPS
Trigger: AGAAGGCCATCCCTGGGTTTCTCTTGTGGTGCACAAGACCCGCCTGCAGATTGCAGAGGACCCCTCTCTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS TCA 72 bp ATTCTCCAAACAGAGCAGGGTTGCAGAGGATGGAGGTaGTTATCCGAGCACCCGTGGCAGGAGGGTTTCCCC +
Preference number: 6 (lower is better)
Translates to: ILQTEQGCRGWR*LSEHPWQEGFP
Trigger: GGGGAAACCCTCCTGCCACGGGTGCTCGGATAATCACCTCCATCCTCTGCAACCCTGCTCTGTTTGGAGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS GCA 72 bp CAGGGGCAAGTACTCATAGTCCAGAGAGGGGTCCTCTaGAATCTGCAGGCGGGTCTTGTGCACCACAAGAGA +
Preference number: 6 (lower is better)
Translates to: QGQVLIVQRGVL*NLQAGLVHHKR
Trigger: TCTCTTGTGGTGCACAAGACCCGCCTGCAGATTGCAGAGGACCCCTCTCTGGACTATGAGTACTTGCCCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CAA 90 bp ACCACACCTTTGAGACTCTGCTTCCATTCTCCAAACAGAGCAGGGTaGCAGAGGATGGAGGTGATTATCCGAGCACCCGTGGCAGGAGGG +
Preference number: 6 (lower is better)
Translates to: TTPLRLCFHSPNRAG*QRMEVIIRAPVAGG
Trigger: CCCTCCTGCCACGGGTGCTCGGATAATCACCTCCATCCTCTGCAACCCTGCTCTGTTTGGAGAATGGAAGCAGAGTCTCAAAGGTGTGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CCA 72 bp TTCCCAATCACAAGGATGCTGCCGACCGGGATATGCTaGAGTACTTCCACGAACATGCTGGGGTCTGAGCAG +
Preference number: 6 (lower is better)
Translates to: FPITRMLPTGIC*STSTNMLGSEQ
Trigger: CTGCTCAGACCCCAGCATGTTCGTGGAAGTACTCCAGCATATCCCGGTCGGCAGCATCCTTGTGATTGGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS GCA 72 bp ATGTTCCCAATCACAAGGATGCTGCCGACCGGGATATaGTGGAGTACTTCCACGAACATGCTGGGGTCTGAG +
Preference number: 6 (lower is better)
Translates to: MFPITRMLPTGI*WSTSTNMLGSE
Trigger: CTCAGACCCCAGCATGTTCGTGGAAGTACTCCAGCATATCCCGGTCGGCAGCATCCTTGTGATTGGGAACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CCA 72 bp CAACGATGTGCACACCCCCAACCCTTTTCTCCGCAATaGCTTCGCTGTGCTTTCCAAAGAGGAGTTCCAGAG +
Preference number: 6 (lower is better)
Translates to: QRCAHPQPFSPQ*LRCAFQRGVPE
Trigger: CTCTGGAACTCCTCTTTGGAAAGCACAGCGAAGCCATTGCGGAGAAAAGGGTTGGGGGTGTGCACATCGTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS TCA 72 bp ACGATTTTCACATTCTTTCGCCACGTCTTGAGGAACTaGGCCCCAAGCTGGAAGGCTCCACTCTCACCAACG +
Preference number: 6 (lower is better)
Translates to: TIFTFFRHVLRN*APSWKAPLSPT
Trigger: CGTTGGTGAGAGTGGAGCCTTCCAGCTTGGGGCTCAGTTCCTCAAGACGTGGCGAAAGAATGTGAAAATCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS GCA 72 bp CCACAAGAGAAACCCAGGGATGGCCTTCTTCGGTCATaGAGACTTTGTAGGCCAGGAACAACTTGCTGGGAT +
Preference number: 6 (lower is better)
Translates to: PQEKPRDGLLRS*RLCRPGTTCWD
Trigger: ATCCCAGCAAGTTGTTCCTGGCCTACAAAGTCTGCATGACCGAAGAAGGCCATCCCTGGGTTTCTCTTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CAA 72 bp TTGAGACTCTGCTTCCATTCTCCAAACAGAGCAGGGTaGCAGAGGATGGAGGTGATTATCCGAGCACCCGTG +
Preference number: 6 (lower is better)
Translates to: LRLCFHSPNRAG*QRMEVIIRAPV
Trigger: CACGGGTGCTCGGATAATCACCTCCATCCTCTGCAACCCTGCTCTGTTTGGAGAATGGAAGCAGAGTCTCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CAA 72 bp TTCTCCTTGATCAGCATCATGTTCTCCACCACACCTTaGAGACTCTGCTTCCATTCTCCAAACAGAGCAGGG +
Preference number: 6 (lower is better)
Translates to: FSLISIMFSTTP*RLCFHSPNRAG
Trigger: CCCTGCTCTGTTTGGAGAATGGAAGCAGAGTCTCAAAGGTGTGGTGGAGAACATGATGCTGATCAAGGAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CCA 72 bp GGATCCCCACTCCTTCATCATAAATGCCAAAATTCTTaGACAGAGATTGGCTGCAGAAGAACTCCAAGCCTA +
Preference number: 6 (lower is better)
Translates to: GSPLLHHKCQNS*TEIGCRRTPSL
Trigger: TAGGCTTGGAGTTCTTCTGCAGCCAATCTCTGTCCAAGAATTTTGGCATTTATGATGAAGGAGTGGGGATCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CCA 72 bp ACTCCAAGCCTAGGGACACAAAGTACTGTAAGATTTTaGTATCTTCCTCGAGGTCACCAGTGGATAAACCTT +
Preference number: 6 (lower is better)
Translates to: TPSLGTQSTVRF*YLPRGHQWINL
Trigger: AAGGTTTATCCACTGGTGACCTCGAGGAAGATACCAAAATCTTACAGTACTTTGTGTCCCTAGGCTTGGAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CAA 72 bp AACTCCAAGCCTAGGGACACAAAGTACTGTAAGATTTaGGTATCTTCCTCGAGGTCACCAGTGGATAAACCT +
Preference number: 6 (lower is better)
Translates to: NSKPRDTKYCKI*VSSSRSPVDKP
Trigger: AGGTTTATCCACTGGTGACCTCGAGGAAGATACCAAAATCTTACAGTACTTTGTGTCCCTAGGCTTGGAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS TCA 72 bp TGCTTGCTCTTAATGATGGACATCAGTTTCGTCCACTaGTTCTGTGTGAACTTGCAATCAGTGATGTTCCCA +
Preference number: 6 (lower is better)
Translates to: CLLLMMDISFVH*FCVNLQSVMFP
Trigger: TGGGAACATCACTGATTGCAAGTTCACACAGAATCAGTGGACGAAACTGATGTCCATCATTAAGAGCAAGCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS CCA 72 bp ACTGTAAGATTTTGGTATCTTCCTCGAGGTCACCAGTaGATAAACCTTGACAGGGAATGTCAAAGAATGGGA +
Preference number: 6 (lower is better)
Translates to: TVRFWYLPRGHQ*INLDRECQRMG
Trigger: TCCCATTCTTTGACATTCCCTGTCAAGGTTTATCCACTGGTGACCTCGAGGAAGATACCAAAATCTTACAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8
CDS TCA 72 bp CCCATGTCCTGGAAGATGAGTCCACACTGTTCTTTTTaGCATGAGACGATACAAACGATTTTCACATTCTTT +
Preference number: 6 (lower is better)
Translates to: PMSWKMSPHCSF*HETIQTIFTFF
Trigger: AAAGAATGTGAAAATCGTTTGTATCGTCTCATGTCAAAAAGAACAGTGTGGACTCATCTTCCAGGACATGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038174.8