Pregenerated sensors for GORAB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040124Ensembl transcript IDs: ENSMUST00000045138.6, ENSMUST00000186402.2
Found 111 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCCACCTCGAGTTGCAAAGCCTCCTCATCAGCCTGCACGTCCAGCTaGTGCATCAGCTCCTCCAGCTTCTTGGCCTTTCGGAGCTCGTTC | + |
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Preference number: 1 (lower is better) Translates to: STSSCKASSSACTSS*CISSSSFLAFRSSF Trigger: GAACGAGCTCCGAAAGGCCAAGAAGCTGGAGGAGCTGATGCAGCAGCTGGACGTGCAGGCTGATGAGGAGGCTTTGCAACTCGAGGTGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR GCA 90 bp | TCTGCTTCCTGTTCCCGAAGCAACTGTTCAACCTCCACCTCGAGTTaGAAAGCCTCCTCATCAGCCTGCACGTCCAGCTGCTGCATCAGC | + |
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Preference number: 1 (lower is better) Translates to: SASCSRSNCSTSTSS*KASSSACTSSCCIS Trigger: GCTGATGCAGCAGCTGGACGTGCAGGCTGATGAGGAGGCTTTGCAACTCGAGGTGGAGGTTGAACAGTTGCTTCGGGAACAGGAAGCAGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR CCA 90 bp | TGCATCAGCTCCTCCAGCTTCTTGGCCTTTCGGAGCTCGTTCTGCTaGATGATGGTGCAGAGGTGTTCGGTGAGCTGCTCTTTCGTCTCG | + |
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Preference number: 1 (lower is better) Translates to: CISSSSFLAFRSSFC*MMVQRCSVSCSFVS Trigger: CGAGACGAAAGAGCAGCTCACCGAACACCTCTGCACCATCATCCAGCAGAACGAGCTCCGAAAGGCCAAGAAGCTGGAGGAGCTGATGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR TCA 90 bp | TCCGTGCGTAGGAATACTCCAGGCTGGCCTGGTCGATTCTGTTCCTaGGGATGCCAATGTCAGCTGACACCATGTCGTCTAAGGCCTGCA | + |
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Preference number: 1 (lower is better) Translates to: SVRRNTPGWPGRFCS*GCQCQLTPCRLRPA Trigger: TGCAGGCCTTAGACGACATGGTGTCAGCTGACATTGGCATCCTCAGGAACAGAATCGACCAGGCCAGCCTGGAGTATTCCTACGCACGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR GCA 90 bp | GCCATCAGGCGGACACAGCCTCTCTACAGAAGCCATTTGTTTGGCTaGCTCTGCTTCCTGTTCCCGAAGCAACTGTTCAACCTCCACCTC | + |
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Preference number: 1 (lower is better) Translates to: AIRRTQPLYRSHLFG*LCFLFPKQLFNLHL Trigger: GAGGTGGAGGTTGAACAGTTGCTTCGGGAACAGGAAGCAGAGGCAGCCAAACAAATGGCTTCTGTAGAGAGGCTGTGTCCGCCTGATGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR GCA 90 bp | AGGCGGACACAGCCTCTCTACAGAAGCCATTTGTTTGGCTGCCTCTaGTTCCTGTTCCCGAAGCAACTGTTCAACCTCCACCTCGAGTTG | + |
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Preference number: 1 (lower is better) Translates to: RRTQPLYRSHLFGCL*FLFPKQLFNLHLEL Trigger: CAACTCGAGGTGGAGGTTGAACAGTTGCTTCGGGAACAGGAAGCAGAGGCAGCCAAACAAATGGCTTCTGTAGAGAGGCTGTGTCCGCCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR GCA 90 bp | TCTTGGCTCCTGGATCTGGGCAGTCTAGTCTATGGGGAGAGCTACTaGAACATTTGCCTGGCTTGTCTGTCTCTGGGGAAGGAGCTTGCT | + |
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Preference number: 1 (lower is better) Translates to: SWLLDLGSLVYGESY*NICLACLSLGKELA Trigger: AGCAAGCTCCTTCCCCAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTCTCCCCATAGACTAGACTGCCCAGATCCAGGAGCCAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR CCA 90 bp | TCTCGCCATCAGGCGGACACAGCCTCTCTACAGAAGCCATTTGTTTaGCTGCCTCTGCTTCCTGTTCCCGAAGCAACTGTTCAACCTCCA | + |
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Preference number: 1 (lower is better) Translates to: SRHQADTASLQKPFV*LPLLPVPEATVQPP Trigger: TGGAGGTTGAACAGTTGCTTCGGGAACAGGAAGCAGAGGCAGCCAAACAAATGGCTTCTGTAGAGAGGCTGTGTCCGCCTGATGGCGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR CCA 90 bp | GCAGCTGAAAAGTTCTTGGCTCCTGGATCTGGGCAGTCTAGTCTATaGGGAGAGCTACTGCAACATTTGCCTGGCTTGTCTGTCTCTGGG | + |
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Preference number: 1 (lower is better) Translates to: AAEKFLAPGSGQSSL*GELLQHLPGLSVSG Trigger: CCCAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTCTCCCCATAGACTAGACTGCCCAGATCCAGGAGCCAAGAACTTTTCAGCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR CCA 90 bp | TCTATGGGGAGAGCTACTGCAACATTTGCCTGGCTTGTCTGTCTCTaGGGAAGGAGCTTGCTTTTGAGGCTCATTGTTCTCTTCAGCCAG | + |
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Preference number: 1 (lower is better) Translates to: SMGRATATFAWLVCL*GRSLLLRLIVLFSQ Trigger: CTGGCTGAAGAGAACAATGAGCCTCAAAAGCAAGCTCCTTCCCCAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTCTCCCCATAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR GCA 90 bp | TTCCTGAGGATGCCAATGTCAGCTGACACCATGTCGTCTAAGGCCTaGAACTCCTTCTGGATCCTCTTTAGTTTTATGGTCTCTGCTTGG | + |
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Preference number: 1 (lower is better) Translates to: FLRMPMSADTMSSKA*NSFWILFSFMVSAW Trigger: CCAAGCAGAGACCATAAAACTAAAGAGGATCCAGAAGGAGTTGCAGGCCTTAGACGACATGGTGTCAGCTGACATTGGCATCCTCAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR TCA 90 bp | AGTGCTTTAACGATTTCAATGCTTCATGACAGAAGAAGCAATACCTaGCATATAAATATCCACATTACAGAGCTTCAGCGAGAGAATACA | + |
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Preference number: 1 (lower is better) Translates to: SALTISMLHDRRSNT*HINIHITELQRENT Trigger: TGTATTCTCTCGCTGAAGCTCTGTAATGTGGATATTTATATGTCAGGTATTGCTTCTTCTGTCATGAAGCATTGAAATCGTTAAAGCACT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| 3UTR TCA 90 bp | ACAATGCACCAGTCAAGTTTTTGGGAACAGGTGATTGACAAACTATaGAAGCAATTAGAAAATGAGTGCTTTAACGATTTCAATGCTTCA | + |
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Preference number: 1 (lower is better) Translates to: TMHQSSFWEQVIDKL*KQLENECFNDFNAS Trigger: TGAAGCATTGAAATCGTTAAAGCACTCATTTTCTAATTGCTTTCATAGTTTGTCAATCACCTGTTCCCAAAAACTTGACTGGTGCATTGT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| 3UTR CAA 90 bp | CTCTGCTTCCTGTTCCCGAAGCAACTGTTCAACCTCCACCTCGAGTaGCAAAGCCTCCTCATCAGCCTGCACGTCCAGCTGCTGCATCAG | + |
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Preference number: 2 (lower is better) Translates to: LCFLFPKQLFNLHLE*QSLLISLHVQLLHQ Trigger: CTGATGCAGCAGCTGGACGTGCAGGCTGATGAGGAGGCTTTGCAACTCGAGGTGGAGGTTGAACAGTTGCTTCGGGAACAGGAAGCAGAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR CCA 90 bp | CTTGGCCTTTCGGAGCTCGTTCTGCTGGATGATGGTGCAGAGGTGTTCGGTGAGTACTCCAGGCTGGCCTaGTCGATTCTGTTCCTGAGG | + |
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Preference number: 2 (lower is better) Translates to: LGLSELVLLDDGAEVFGEYSRLA*SILFLR Trigger: CCTCAGGAACAGAATCGACCAGGCCAGCCTGGAGTA...CTCACCGAACACCTCTGCACCATCATCCAGCAGAACGAGCTCCGAAAGGCCAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR GCA 90 bp | AGAGCTACTGCAACATTTGCCTGGCTTGTCTGTCTCTGGGGAAGGAGCTTGCTTATGTCGTCTAAGGCCTaGAACTCCTTCTGGATCCTC | + |
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Preference number: 2 (lower is better) Translates to: RATATFAWLVCLWGRSLLMSSKA*NSFWIL Trigger: GAGGATCCAGAAGGAGTTGCAGGCCTTAGACGACAT...AAGCAAGCTCCTTCCCCAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR GCA 90 bp | AGAGCTACTGCAACATTTGCCTGGCTTGTCTGTCTCTGGGGAAGGAGCTTGCTTATCAAAGCGCTTCCGTaGGTAGGAATACTCCAGGCT | + |
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Preference number: 2 (lower is better) Translates to: RATATFAWLVCLWGRSLLIKALP*VGILQA Trigger: AGCCTGGAGTATTCCTACGCACGGAAGCGCTTTGAT...AAGCAAGCTCCTTCCCCAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR TCA 90 bp | CTTTCGGAGCTCGTTCTGCTGGATGATGGTGCAGAGGTGTTCGGTGAGCTGCTCAACAGTCACTACTTCTaGCTTTGGAATGATCTGACA | + |
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Preference number: 2 (lower is better) Translates to: LSELVLLDDGAEVFGELLNSHYF*LWNDLT Trigger: TGTCAGATCATTCCAAAGTCAGAAGTAGTGACTGTT...GAGCAGCTCACCGAACACCTCTGCACCATCATCCAGCAGAACGAGCTCCGAAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR TCA 90 bp | TTCCAACTTGTGTCTACTCACTCTAGTAGCATCCGGGTAGGTAAGTTAACCCGTCTTTCCGCAATGGCTTaGGCCAAAAGGGCTTTCTTA | + |
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Preference number: 2 (lower is better) Translates to: FQLVSTHSSSIRVGKLTRLSAMA*AKRAFL Trigger: TAAGAAAGCCCTTTTGGCTCAAGCCATTGCGGAAAG...ACGGGTTAACTTACCTACCCGGATGCTACTAGAGTGAGTAGACACAAGTTGGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR CCA 90 bp | GTTAAGTTTGGCCAAGGACTAAGAAGTCATGTAGTTTTTCTTCTACCACTGTGCGCTCCTCCAGCTTCTTaGCCTTTCGGAGCTCGTTCT | + |
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Preference number: 2 (lower is better) Translates to: VKFGQGLRSHVVFLLPLCAPPAS*PFGARS Trigger: AGAACGAGCTCCGAAAGGCCAAGAAGCTGGAGGAGC...GCACAGTGGTAGAAGAAAAACTACATGACTTCTTAGTCCTTGGCCAAACTTAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR CCA 90 bp | GGTAAAGCCACACATTCACAGCTTATCTATGGATGTGGATCAACTAGCCACAATCAGAAGCCATTTGTTTaGCTGCCTCTGCTTCCTGTT | + |
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Preference number: 2 (lower is better) Translates to: GKATHSQLIYGCGSTSHNQKPFV*LPLLPV Trigger: AACAGGAAGCAGAGGCAGCCAAACAAATGGCTTCTG...ATTGTGGCTAGTTGATCCACATCCATAGATAAGCTGTGAATGTGTGGCTTTACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR TCA 90 bp | GGTAAAGCCACACATTCACAGCTTATCTATGGATGTGGATCAACTAGCCACAATCGCAGAGATATTAACTaGAAAAACACTGGCCGCTCA | + |
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Preference number: 2 (lower is better) Translates to: GKATHSQLIYGCGSTSHNRRDIN*KNTGRS Trigger: TGAGCGGCCAGTGTTTTTTCAGTTAATATCTCTGCG...ATTGTGGCTAGTTGATCCACATCCATAGATAAGCTGTGAATGTGTGGCTTTACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR TCA 90 bp | TGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCATTCTCAGTGACAAGGCTTaGAGGAACCCCAACTTCGAG | + |
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Preference number: 2 (lower is better) Translates to: WIINETCHSQSHFRNIFILSDKA*RNPNFE Trigger: CTCGAAGTTGGGGTTCCTTCAAGCCTTGTCACTGAG...AATGAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| 3UTR-3UTR TCA 90 bp | GACACCATGTCGTCTAAGGCCTGCAACTCCTTCTGGATCCTCTTTAGTTTTATGATTTCGTTCTTTTCTTaGAATATAAGCCAGCCTGTG | + |
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Preference number: 2 (lower is better) Translates to: DTMSSKACNSFWILFSFMISFFS*NISQPV Trigger: CACAGGCTGGCTTATATTTCAAGAAAAGAACGAAAT...CATAAAACTAAAGAGGATCCAGAAGGAGTTGCAGGCCTTAGACGACATGGTGTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR GCA 90 bp | TGTTGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCTTGTTTGGCTGCCTCTaGTTCCTGTTCCCGAAGCAA | + |
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Preference number: 2 (lower is better) Translates to: CWIINETCHSQSHFRNIFLFGCL*FLFPKQ Trigger: TTGCTTCGGGAACAGGAAGCAGAGGCAGCCAAACAA...GAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR GCA 90 bp | GGTAAAGCCACACATTCACAGCTTATCTATGGATGTGGATCAACTAGCCACAATTCAAATCTAGCACAATaGACCAGTCAAGTTTTTGGG | + |
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Preference number: 2 (lower is better) Translates to: GKATHSQLIYGCGSTSHNSNLAQ*TSQVFG Trigger: CCCAAAAACTTGACTGGTGCATTGTGCTAGATTTGA...ATTGTGGCTAGTTGATCCACATCCATAGATAAGCTGTGAATGTGTGGCTTTACC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| 3UTR-3UTR TCA 90 bp | CAAGTTAAGTTTGGCCAAGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGGACTTTGGAATGATCTaGCATGCTAACATACTATCA | + |
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Preference number: 2 (lower is better) Translates to: QVKFGQGLRSHVVFLLPLDFGMI*HANILS Trigger: TGATAGTATGTTAGCATGTCAGATCATTCCAAAGTC...CAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCTTGGCCAAACTTAACTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| 3UTR-3UTR CCA 90 bp | CTCAGTGTTCTCTCACAAGTTAAGTTTGGCCAAGGACTAAGAAGTCATGTAGTTTCCTCTTTAGTTTTATaGTCTCTGCTTGGGTCTTCT | + |
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Preference number: 2 (lower is better) Translates to: LSVLSQVKFGQGLRSHVVSSLVL*SLLGSS Trigger: AGAAGACCCAAGCAGAGACCATAAAACTAAAGAGGA...AACTACATGACTTCTTAGTCCTTGGCCAAACTTAACTTGTGAGAGAACACTGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCTTGTTGGATAATCAATaGGACTTGCCACTCTCAGAG | + |
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Preference number: 2 (lower is better) Translates to: CWIINETCHSQSHFRNIFLLDNQ*DLPLSE Trigger: CTCTGAGAGTGGCAAGTCTCATTGATTATCCAACAA...GAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| 3UTR-3UTR TCA 90 bp | TGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCATTAACAGTCACTACTTCTaGCTTTGGAATGATCTGACA | + |
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Preference number: 2 (lower is better) Translates to: WIINETCHSQSHFRNIFINSHYF*LWNDLT Trigger: TGTCAGATCATTCCAAAGTCAGAAGTAGTGACTGTT...AATGAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| 3UTR-3UTR TCA 90 bp | TGTTGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCCTTTATTATGCTTCATaGGAAGTTGTTCTTTCCGCA | + |
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Preference number: 2 (lower is better) Translates to: CWIINETCHSQSHFRNIFLYYAS*EVVLSA Trigger: TGCGGAAAGAACAACTTCTCATGAAGCATAATAAAG...GAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCAACA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR TCA 90 bp | TGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCATTGACTTTGGAATGATCTaGCATGCTAACATACTATCA | + |
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Preference number: 2 (lower is better) Translates to: WIINETCHSQSHFRNIFIDFGMI*HANILS Trigger: TGATAGTATGTTAGCATGTCAGATCATTCCAAAGTC...AATGAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| 3UTR GCA 72 bp | AGCTCCTCCAGCTTCTTGGCCTTTCGGAGCTCGTTCTaGTGGATGATGGTGCAGAGGTGTTCGGTGAGCTGC | + |
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Preference number: 3 (lower is better) Translates to: SSSSFLAFRSSF*WMMVQRCSVSC Trigger: GCAGCTCACCGAACACCTCTGCACCATCATCCAGCAGAACGAGCTCCGAAAGGCCAAGAAGCTGGAGGAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR CCA 72 bp | TCCTCCAGCTTCTTGGCCTTTCGGAGCTCGTTCTGCTaGATGATGGTGCAGAGGTGTTCGGTGAGCTGCTCT | + |
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Preference number: 3 (lower is better) Translates to: SSSFLAFRSSFC*MMVQRCSVSCS Trigger: AGAGCAGCTCACCGAACACCTCTGCACCATCATCCAGCAGAACGAGCTCCGAAAGGCCAAGAAGCTGGAGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR CAA 90 bp | CTGAAGACACACTCTCGCCATCAGGCGGACACAGCCTCTCTACAGAAGCCATTTAGCTCCTCCAGCTTCTaGGCCTTTCGGAGCTCGTTC | + |
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Preference number: 3 (lower is better) Translates to: LKTHSRHQADTASLQKPFSSSSF*AFRSSF Trigger: GAACGAGCTCCGAAAGGCCAAGAAGCTGGAGGAGCT...AAATGGCTTCTGTAGAGAGGCTGTGTCCGCCTGATGGCGAGAGTGTGTCTTCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR GCA 72 bp | GGCAGTCTAGTCTATGGGGAGAGCTACTGCAACATTTaGCTGGCTTGTCTGTCTCTGGGGAAGGAGCTTGCT | + |
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Preference number: 3 (lower is better) Translates to: GSLVYGESYCNI*LACLSLGKELA Trigger: AGCAAGCTCCTTCCCCAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTCTCCCCATAGACTAGACTGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR GCA 72 bp | CTGGATCTGGGCAGTCTAGTCTATGGGGAGAGCTACTaGAACATTTGCCTGGCTTGTCTGTCTCTGGGGAAG | + |
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Preference number: 3 (lower is better) Translates to: LDLGSLVYGESY*NICLACLSLGK Trigger: CTTCCCCAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTCTCCCCATAGACTAGACTGCCCAGATCCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR CCA 72 bp | CAGGCGGACACAGCCTCTCTACAGAAGCCATTTGTTTaGCTGCCTCTGCTTCCTGTTCCCGAAGCAACTGTT | + |
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Preference number: 3 (lower is better) Translates to: QADTASLQKPFV*LPLLPVPEATV Trigger: AACAGTTGCTTCGGGAACAGGAAGCAGAGGCAGCCAAACAAATGGCTTCTGTAGAGAGGCTGTGTCCGCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR CAA 90 bp | TGTTCAACCTCCACCTCGAGTTGCAAAGCCTCCTCATCAGCCTGCACGTCCAGCTCTTTCCGCAATGGCTaGAGCCAAAAGGGCTTTCTT | + |
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Preference number: 3 (lower is better) Translates to: CSTSTSSCKASSSACTSSSFRNG*SQKGFL Trigger: AAGAAAGCCCTTTTGGCTCAAGCCATTGCGGAAAGA...GCTGGACGTGCAGGCTGATGAGGAGGCTTTGCAACTCGAGGTGGAGGTTGAACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR CAA 90 bp | GCCACAGCAGCTGAAAAGTTCTTGGCTCCTGGATCTGGGCAGTCTAGTCTATGGCAACATTTGCCTGGCTaGTCTGTCTCTGGGGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: ATAAEKFLAPGSGQSSLWQHLPG*SVSGEG Trigger: TCCTTCCCCAGAGACAGACAAGCCAGGCAAATGTTG...CCATAGACTAGACTGCCCAGATCCAGGAGCCAAGAACTTTTCAGCTGCTGTGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR TCA 72 bp | AGGAATACTCCAGGCTGGCCTGGTCGATTCTGTTCCTaGGGATGCCAATGTCAGCTGACACCATGTCGTCTA | + |
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Preference number: 3 (lower is better) Translates to: RNTPGWPGRFCS*GCQCQLTPCRL Trigger: TAGACGACATGGTGTCAGCTGACATTGGCATCCTCAGGAACAGAATCGACCAGGCCAGCCTGGAGTATTCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR GCA 72 bp | CAGCCTCTCTACAGAAGCCATTTGTTTGGCTGCCTCTaGTTCCTGTTCCCGAAGCAACTGTTCAACCTCCAC | + |
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Preference number: 3 (lower is better) Translates to: QPLYRSHLFGCL*FLFPKQLFNLH Trigger: GTGGAGGTTGAACAGTTGCTTCGGGAACAGGAAGCAGAGGCAGCCAAACAAATGGCTTCTGTAGAGAGGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR GCA 72 bp | CGGACACAGCCTCTCTACAGAAGCCATTTGTTTGGCTaGCTCTGCTTCCTGTTCCCGAAGCAACTGTTCAAC | + |
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Preference number: 3 (lower is better) Translates to: RTQPLYRSHLFG*LCFLFPKQLFN Trigger: GTTGAACAGTTGCTTCGGGAACAGGAAGCAGAGGCAGCCAAACAAATGGCTTCTGTAGAGAGGCTGTGTCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR-3UTR CAA 90 bp | TCGAGTTGCAAAGCCTCCTCATCAGCCTGCACGTCCAGCTGCTGCATCAGCTCCATGCTTCATGAGAAGTaGTTCTTTCCGCAATGGCTT | + |
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Preference number: 3 (lower is better) Translates to: SSCKASSSACTSSCCISSMLHEK*FFPQWL Trigger: AAGCCATTGCGGAAAGAACAACTTCTCATGAAGCAT...GGAGCTGATGCAGCAGCTGGACGTGCAGGCTGATGAGGAGGCTTTGCAACTCGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR GCA 72 bp | AATGTACTCAGCTTCAGCTCTATCAAAGCGCTTCCGTaGGTAGGAATACTCCAGGCTGGCCTGGTCGATTCT | + |
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Preference number: 3 (lower is better) Translates to: NVLSFSSIKALP*VGILQAGLVDS Trigger: AGAATCGACCAGGCCAGCCTGGAGTATTCCTACGCACGGAAGCGCTTTGATAGAGCTGAAGCTGAGTACATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR CCA 72 bp | GCTGACACCATGTCGTCTAAGGCCTGCAACTCCTTCTaGATCCTCTTTAGTTTTATGGTCTCTGCTTGGGTC | + |
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Preference number: 3 (lower is better) Translates to: ADTMSSKACNSF*ILFSFMVSAWV Trigger: GACCCAAGCAGAGACCATAAAACTAAAGAGGATCCAGAAGGAGTTGCAGGCCTTAGACGACATGGTGTCAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| 3UTR GCA 72 bp | ATGCCAATGTCAGCTGACACCATGTCGTCTAAGGCCTaGAACTCCTTCTGGATCCTCTTTAGTTTTATGGTC | + |
|
Preference number: 3 (lower is better) Translates to: MPMSADTMSSKA*NSFWILFSFMV Trigger: GACCATAAAACTAAAGAGGATCCAGAAGGAGTTGCAGGCCTTAGACGACATGGTGTCAGCTGACATTGGCAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| 3UTR-3UTR CAA 90 bp | AGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGTGCTTGTAGTGTTGAAGCTCTACAGAAGCCATTaGTTTGGCTGCCTCTGCTTC | + |
|
Preference number: 3 (lower is better) Translates to: RAKKPCSFSSTTVLVVLKLYRSH*FGCLCF Trigger: GAAGCAGAGGCAGCCAAACAAATGGCTTCTGTAGAG...CTTCAACACTACAAGCACAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| 3UTR TCA 72 bp | CAGAGACAAGCTATAATTTACCGCAGAGATATTAACTaGAAAAACACTGGCCGCTCATGTGGCCACAGCAGC | + |
|
Preference number: 3 (lower is better) Translates to: QRQAIIYRRDIN*KNTGRSCGHSS Trigger: GCTGCTGTGGCCACATGAGCGGCCAGTGTTTTTTCAGTTAATATCTCTGCGGTAAATTATAGCTTGTCTCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| 3UTR-3UTR CAA 90 bp | CAAGTTAAGTTTGGCCAAGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGAGGTTGTCTTCCAACTaGTGTCTACTCACTCTAGTA | + |
|
Preference number: 3 (lower is better) Translates to: QVKFGQGLRSHVVFLLPLRLSSN*CLLTLV Trigger: TACTAGAGTGAGTAGACACAAGTTGGAAGACAACCT...CAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCTTGGCCAAACTTAACTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| 3UTR-3UTR CAA 90 bp | TGTTGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCAGGTTGTCTTCCAACTaGTGTCTACTCACTCTAGTA | + |
|
Preference number: 3 (lower is better) Translates to: CWIINETCHSQSHFRNIFRLSSN*CLLTLV Trigger: TACTAGAGTGAGTAGACACAAGTTGGAAGACAACCT...GAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCAACA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| 3UTR-3UTR CAA 90 bp | GGAAAACAGAAGAAAGTAAAGGTAAAGCCACACATTCACAGCTTATCTATGGATTTTTATGGTCTCTGCTaGGGTCTTCTTAGATTTGTA | + |
|
Preference number: 3 (lower is better) Translates to: GKQKKVKVKPHIHSLSMDFYGLC*GLLRFV Trigger: TACAAATCTAAGAAGACCCAAGCAGAGACCATAAAA...ATCCATAGATAAGCTGTGAATGTGTGGCTTTACCTTTACTTTCTTCTGTTTTCC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| 3UTR TCA 72 bp | TATAAGCCAGCCTGTGAGTTGTATCTTTATTATGCTTaGAATATAAGCCAGCCTGTGAGTTGTATCTTTATT | + |
|
Preference number: 3 (lower is better) Translates to: YKPACELYLYYA*NISQPVSCIFI Trigger: AATAAAGATACAACTCACAGGCTGGCTTATATTTCAAGCATAATAAAGATACAACTCACAGGCTGGCTTATA 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| 3UTR GCA 72 bp | GAGAGAATACATCATTGTTGGATAATCAATGAGACTTaGCACTCTCAGAGTCACTTTAGAAACATTTTCATT | + |
|
Preference number: 3 (lower is better) Translates to: ERIHHCWIINET*HSQSHFRNIFI Trigger: AATGAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCAACAATGATGTATTCTCTC 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| 3UTR CAA 72 bp | CTGGCCGCTCATGTGGCCACAGCAGCTGAAAAGTTCTaGGCTCCTGGATCTGGGCAGTCTAGTCTATGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: LAAHVATAAEKF*APGSGQSSLWG Trigger: TCCCCATAGACTAGACTGCCCAGATCCAGGAGCCAAGAACTTTTCAGCTGCTGTGGCCACATGAGCGGCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| 3UTR CAA 72 bp | GCCATCAGGCGGACACAGCCTCTCTACAGAAGCCATTaGTTTGGCTGCCTCTGCTTCCTGTTCCCGAAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: AIRRTQPLYRSH*FGCLCFLFPKQ Trigger: TTGCTTCGGGAACAGGAAGCAGAGGCAGCCAAACAAATGGCTTCTGTAGAGAGGCTGTGTCCGCCTGATGGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| 3UTR CAA 72 bp | GGGCAGTCTAGTCTATGGGGAGAGCTACTGCAACATTaGCCTGGCTTGTCTGTCTCTGGGGAAGGAGCTTGC | + |
|
Preference number: 4 (lower is better) Translates to: GQSSLWGELLQH*PGLSVSGEGAC Trigger: GCAAGCTCCTTCCCCAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTCTCCCCATAGACTAGACTGCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| 3UTR CAA 72 bp | TCAGGCGGACACAGCCTCTCTACAGAAGCCATTTGTTaGGCTGCCTCTGCTTCCTGTTCCCGAAGCAACTGT | + |
|
Preference number: 4 (lower is better) Translates to: SGGHSLSTEAIC*AASASCSRSNC Trigger: ACAGTTGCTTCGGGAACAGGAAGCAGAGGCAGCCAAACAAATGGCTTCTGTAGAGAGGCTGTGTCCGCCTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| 3UTR CAA 72 bp | CCATGTAGTTTTTCTTCTACCACTGTGCTTGTAGTGTaGAAGGTCAAACCCAGGGCCCCGAGCACTCCCACC | + |
|
Preference number: 4 (lower is better) Translates to: PCSFSSTTVLVV*KVKPRAPSTPT Trigger: GGTGGGAGTGCTCGGGGCCCTGGGTTTGACCTTCAACACTACAAGCACAGTGGTAGAAGAAAAACTACATGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| CDS-3UTR TCA 90 bp | AGAGCTACTGCAACATTTGCCTGGCTTGTCTGTCTCTGGGGAAGGAGCTTGCTTGGAGAGCGTGGCTTTTaGCTGTTAGCTCTCTGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: RATATFAWLVCLWGRSLLGERGF*LLALCL Trigger: CAAACAGAGAGCTAACAGTCAAAAGCCACGCTCTCC...AAGCAAGCTCCTTCCCCAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| CDS-3UTR CCA 90 bp | AGAGCTACTGCAACATTTGCCTGGCTTGTCTGTCTCTGGGGAAGGAGCTTGCTTTTTGCAATCTGGCTTTaGAGCTCGAACCTCGGCACT | + |
|
Preference number: 4 (lower is better) Translates to: RATATFAWLVCLWGRSLLFAIWL*SSNLGT Trigger: AGTGCCGAGGTTCGAGCTCCAAAGCCAGATTGCAAA...AAGCAAGCTCCTTCCCCAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| CDS-3UTR GCA 90 bp | CAAAGTCTCAGTGTTCTCTCACAAGTTAAGTTTGGCCAAGGACTAAGAAGTCATGCCTGCACGTCCAGCTaGTGCATCAGCTCCTCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: QSLSVLSQVKFGQGLRSHACTSS*CISSSS Trigger: GCTGGAGGAGCTGATGCAGCAGCTGGACGTGCAGGC...ATGACTTCTTAGTCCTTGGCCAAACTTAACTTGTGAGAGAACACTGAGACTTTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR TCA 90 bp | GGAAAACAGAAGAAAGTAAAGGTAAAGCCACACATTCACAGCTTATCTATGGATAGGAAGAGGTGGGTGTaGGGGGACTGGGGGCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: GKQKKVKVKPHIHSLSMDRKRWV*GDWGPQ Trigger: CTGTGGCCCCCAGTCCCCTCACACCCACCTCTTCCT...ATCCATAGATAAGCTGTGAATGTGTGGCTTTACCTTTACTTTCTTCTGTTTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| CDS-3UTR TCA 90 bp | CAAAGTCTCAGTGTTCTCTCACAAGTTAAGTTTGGCCAAGGACTAAGAAGTCATGCTCGTTCTGCTGGATaGTGGTGCAGAGGTGTTCGG | + |
|
Preference number: 4 (lower is better) Translates to: QSLSVLSQVKFGQGLRSHARSAG*WCRGVR Trigger: CCGAACACCTCTGCACCATCATCCAGCAGAACGAGC...ATGACTTCTTAGTCCTTGGCCAAACTTAACTTGTGAGAGAACACTGAGACTTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR GCA 90 bp | GGTAAAGCCACACATTCACAGCTTATCTATGGATGTGGATCAACTAGCCACAATGGTGCAGAGAGCAGCTaGTCTGGAAGCAATGAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: GKATHSQLIYGCGSTSHNGAESS*SGSNEA Trigger: AGCCTCATTGCTTCCAGAGCAGCTGCTCTCTGCACC...ATTGTGGCTAGTTGATCCACATCCATAGATAAGCTGTGAATGTGTGGCTTTACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| CDS-3UTR CCA 90 bp | GGTAAAGCCACACATTCACAGCTTATCTATGGATGTGGATCAACTAGCCACAATGCTCCTCCAGCTTCTTaGCCTTTCGGAGCTCGTTCT | + |
|
Preference number: 4 (lower is better) Translates to: GKATHSQLIYGCGSTSHNAPPAS*PFGARS Trigger: AGAACGAGCTCCGAAAGGCCAAGAAGCTGGAGGAGC...ATTGTGGCTAGTTGATCCACATCCATAGATAAGCTGTGAATGTGTGGCTTTACC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR GCA 90 bp | CTGAAGACACACTCTCGCCATCAGGCGGACACAGCCTCTCTACAGAAGCCATTTAATGGATCTTTATTCTaGTTTAGTCTCCTCAGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LKTHSRHQADTASLQKPFNGSLF*FSLLSS Trigger: AGAGCTGAGGAGACTAAAGCAGAATAAAGATCCATT...AAATGGCTTCTGTAGAGAGGCTGTGTCCGCCTGATGGCGAGAGTGTGTCTTCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| CDS-3UTR GCA 90 bp | GGTAAAGCCACACATTCACAGCTTATCTATGGATGTGGATCAACTAGCCACAATAGCCATTTGTTTGGCTaGCTCTGCTTCCTGTTCCCG | + |
|
Preference number: 4 (lower is better) Translates to: GKATHSQLIYGCGSTSHNSHLFG*LCFLFP Trigger: CGGGAACAGGAAGCAGAGGCAGCCAAACAAATGGCT...ATTGTGGCTAGTTGATCCACATCCATAGATAAGCTGTGAATGTGTGGCTTTACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR TCA 90 bp | CAAGTTAAGTTTGGCCAAGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGGGAGAGCGTGGCTTTTaGCTGTTAGCTCTCTGTTTG | + |
|
Preference number: 4 (lower is better) Translates to: QVKFGQGLRSHVVFLLPLGERGF*LLALCL Trigger: CAAACAGAGAGCTAACAGTCAAAAGCCACGCTCTCC...CAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCTTGGCCAAACTTAACTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| CDS-3UTR TCA 90 bp | TTCCAACTTGTGTCTACTCACTCTAGTAGCATCCGGGTAGGTAAGTTAACCCGTGAAGGAGCTTGCTTTTaGGGCTCATTGTTCTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: FQLVSTHSSSIRVGKLTREGACF*GSLFSS Trigger: TGAAGAGAACAATGAGCCTCAAAAGCAAGCTCCTTC...ACGGGTTAACTTACCTACCCGGATGCTACTAGAGTGAGTAGACACAAGTTGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR GCA 90 bp | CAAGTTAAGTTTGGCCAAGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGATGTCGTCTAAGGCCTaGAACTCCTTCTGGATCCTC | + |
|
Preference number: 4 (lower is better) Translates to: QVKFGQGLRSHVVFLLPLMSSKA*NSFWIL Trigger: GAGGATCCAGAAGGAGTTGCAGGCCTTAGACGACAT...CAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCTTGGCCAAACTTAACTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR GCA 90 bp | AAGTTTGGCCAAGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGTGCTTGAGCTACTGCAACATTTaGCTGGCTTGTCTGTCTCTG | + |
|
Preference number: 4 (lower is better) Translates to: KFGQGLRSHVVFLLPLCLSYCNI*LACLSL Trigger: CAGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCT...CAAGCACAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCTTGGCCAAACTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR CCA 90 bp | AGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGTGCTTGTAGTGTTGAAGGGAATTCTCAAGTCCTaGTTCTTGGGGCTGACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: RAKKPCSFSSTTVLVVLKGILKS*FLGLTS Trigger: GGAAGTCAGCCCCAAGAACCAGGACTTGAGAATTCC...CTTCAACACTACAAGCACAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| CDS-3UTR CCA 90 bp | GGTAAAGCCACACATTCACAGCTTATCTATGGATGTGGATCAACTAGCCACAATCAGCTGAAAAGTTCTTaGCTCCTGGATCTGGGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: GKATHSQLIYGCGSTSHNQLKSS*LLDLGS Trigger: ACTGCCCAGATCCAGGAGCCAAGAACTTTTCAGCTG...ATTGTGGCTAGTTGATCCACATCCATAGATAAGCTGTGAATGTGTGGCTTTACC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR TCA 90 bp | AGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGTGCTTGTAGTGTTGAAGCTTTCCGCAATGGCTTaGGCCAAAAGGGCTTTCTTA | + |
|
Preference number: 4 (lower is better) Translates to: RAKKPCSFSSTTVLVVLKLSAMA*AKRAFL Trigger: TAAGAAAGCCCTTTTGGCTCAAGCCATTGCGGAAAG...CTTCAACACTACAAGCACAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR CCA 90 bp | GTTAAGTTTGGCCAAGGACTAAGAAGTCATGTAGTTTTTCTTCTACCACTGTGCTTTGCAATCTGGCTTTaGAGCTCGAACCTCGGCACT | + |
|
Preference number: 4 (lower is better) Translates to: VKFGQGLRSHVVFLLPLCFAIWL*SSNLGT Trigger: AGTGCCGAGGTTCGAGCTCCAAAGCCAGATTGCAAA...GCACAGTGGTAGAAGAAAAACTACATGACTTCTTAGTCCTTGGCCAAACTTAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| CDS-3UTR CCA 90 bp | TGTTGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCCGGAGCTCGTTCTGCTaGATGATGGTGCAGAGGTGT | + |
|
Preference number: 4 (lower is better) Translates to: CWIINETCHSQSHFRNIFRSSFC*MMVQRC Trigger: ACACCTCTGCACCATCATCCAGCAGAACGAGCTCCG...GAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCAACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR CCA 90 bp | AGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGTGCTTGTAGTGTTGAAGCAGAAGCCATTTGTTTaGCTGCCTCTGCTTCCTGTT | + |
|
Preference number: 4 (lower is better) Translates to: RAKKPCSFSSTTVLVVLKQKPFV*LPLLPV Trigger: AACAGGAAGCAGAGGCAGCCAAACAAATGGCTTCTG...CTTCAACACTACAAGCACAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR CCA 90 bp | GTTAAGTTTGGCCAAGGACTAAGAAGTCATGTAGTTTTTCTTCTACCACTGTGCACTGCAACATTTGCCTaGCTTGTCTGTCTCTGGGGA | + |
|
Preference number: 4 (lower is better) Translates to: VKFGQGLRSHVVFLLPLCTATFA*LVCLWG Trigger: TCCCCAGAGACAGACAAGCCAGGCAAATGTTGCAGT...GCACAGTGGTAGAAGAAAAACTACATGACTTCTTAGTCCTTGGCCAAACTTAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR GCA 90 bp | AGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGTGCTTGTAGTGTTGAAGCCAAGCTTTTGGCTCTaGTCTAGAAGGGCTTTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: RAKKPCSFSSTTVLVVLKPSFWL*SRRAFS Trigger: TGAAAAAGCCCTTCTAGAGCAGAGCCAAAAGCTTGG...CTTCAACACTACAAGCACAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| CDS-3UTR GCA 90 bp | CAAGTTAAGTTTGGCCAAGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGCCAAGCTTTTGGCTCTaGTCTAGAAGGGCTTTTTCA | + |
|
Preference number: 4 (lower is better) Translates to: QVKFGQGLRSHVVFLLPLPSFWL*SRRAFS Trigger: TGAAAAAGCCCTTCTAGAGCAGAGCCAAAAGCTTGG...CAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCTTGGCCAAACTTAACTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| CDS-3UTR CCA 90 bp | CAAAGTCTCAGTGTTCTCTCACAAGTTAAGTTTGGCCAAGGACTAAGAAGTCATAGTCGCTGTTCTTGTTaGAGGACTTCCCAACGAGAT | + |
|
Preference number: 4 (lower is better) Translates to: QSLSVLSQVKFGQGLRSHSRCSC*RTSQRD Trigger: ATCTCGTTGGGAAGTCCTCCAACAAGAACAGCGACT...ATGACTTCTTAGTCCTTGGCCAAACTTAACTTGTGAGAGAACACTGAGACTTTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| CDS-3UTR CCA 90 bp | TGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCATTTACTCCAGGCTGGCCTaGTCGATTCTGTTCCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: WIINETCHSQSHFRNIFIYSRLA*SILFLR Trigger: CCTCAGGAACAGAATCGACCAGGCCAGCCTGGAGTA...AATGAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR TCA 90 bp | TGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCATTCTCTTCAGCCAGTTCTaGAGACACACTCTCGCCATC | + |
|
Preference number: 4 (lower is better) Translates to: WIINETCHSQSHFRNIFILFSQF*RHTLAI Trigger: GATGGCGAGAGTGTGTCTTCAGAACTGGCTGAAGAG...AATGAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR GCA 90 bp | AAGCAATACCTGACATATAAATATCCACATTACAGAGCTTCAGCGAGAGAATACATCAAAGCGCTTCCGTaGGTAGGAATACTCCAGGCT | + |
|
Preference number: 4 (lower is better) Translates to: KQYLTYKYPHYRASAREYIKALP*VGILQA Trigger: AGCCTGGAGTATTCCTACGCACGGAAGCGCTTTGAT...GTATTCTCTCGCTGAAGCTCTGTAATGTGGATATTTATATGTCAGGTATTGCTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR CCA 90 bp | AAGCAATACCTGACATATAAATATCCACATTACAGAGCTTCAGCGAGAGAATACGGAATTCTCAAGTCCTaGTTCTTGGGGCTGACTTCC | + |
|
Preference number: 4 (lower is better) Translates to: KQYLTYKYPHYRASAREYGILKS*FLGLTS Trigger: GGAAGTCAGCCCCAAGAACCAGGACTTGAGAATTCC...GTATTCTCTCGCTGAAGCTCTGTAATGTGGATATTTATATGTCAGGTATTGCTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| CDS-3UTR CCA 90 bp | AAGTTTGGCCAAGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGTGCTTGTTTATGGTCTCTGCTTaGGTCTTCTTAGATCTTTCC | + |
|
Preference number: 4 (lower is better) Translates to: KFGQGLRSHVVFLLPLCLFMVSA*VFLDLS Trigger: GGAAAGATCTAAGAAGACCCAAGCAGAGACCATAAA...CAAGCACAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCTTGGCCAAACTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR CCA 90 bp | TGTTGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCGGGCAGTCTAGTCTATaGGGAGAGCTACTGCAACAT | + |
|
Preference number: 4 (lower is better) Translates to: CWIINETCHSQSHFRNIFGQSSL*GELLQH Trigger: ATGTTGCAGTAGCTCTCCCCATAGACTAGACTGCCC...GAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| 3UTR CAA 72 bp | CCTGTGAGTTGTATCTTTATTATGCTTCATGAGAAGTaGTTCTTTCCGCAATGGCTTGAGCCAAAAGGGCTT | + |
|
Preference number: 4 (lower is better) Translates to: PVSCIFIMLHEK*FFPQWLEPKGL Trigger: AAGCCCTTTTGGCTCAAGCCATTGCGGAAAGAACAACTTCTCATGAAGCATAATAAAGATACAACTCACAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
||
| CDS-3UTR GCA 90 bp | CTCAGTGTTCTCTCACAAGTTAAGTTTGGCCAAGGACTAAGAAGTCATGTAGTTAATGGATCTTTATTCTaGTTTAGTCTCCTCAGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LSVLSQVKFGQGLRSHVVNGSLF*FSLLSS Trigger: AGAGCTGAGGAGACTAAAGCAGAATAAAGATCCATT...AACTACATGACTTCTTAGTCCTTGGCCAAACTTAACTTGTGAGAGAACACTGAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
||
| CDS-3UTR CCA 90 bp | TGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCATTGCCTGCAACTCCTTCTaGATCCTCTTTAGTTTTATG | + |
|
Preference number: 4 (lower is better) Translates to: WIINETCHSQSHFRNIFIACNSF*ILFSFM Trigger: CATAAAACTAAAGAGGATCCAGAAGGAGTTGCAGGC...AATGAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR CCA 90 bp | TGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCATTTCCTCTTTAGTTTTATaGTCTCTGCTTGGGTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: WIINETCHSQSHFRNIFISSLVL*SLLGSS Trigger: AGAAGACCCAAGCAGAGACCATAAAACTAAAGAGGA...AATGAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
||
| CDS-3UTR CAA 90 bp | TCGAGTTGCAAAGCCTCCTCATCAGCCTGCACGTCCAGCTGCTGCATCAGCTCCCTGTTAGCTCTCTGTTaGGGTGCAGAGAGCAGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: SSCKASSSACTSSCCISSLLALC*GAESSC Trigger: GCAGCTGCTCTCTGCACCCAAACAGAGAGCTAACAG...GGAGCTGATGCAGCAGCTGGACGTGCAGGCTGATGAGGAGGCTTTGCAACTCGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| CDS-3UTR CAA 90 bp | CTTTCGGAGCTCGTTCTGCTGGATGATGGTGCAGAGGTGTTCGGTGAGCTGCTCCTTTGCAATCTGGCTTaGGAGCTCGAACCTCGGCAC | + |
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Preference number: 5 (lower is better) Translates to: LSELVLLDDGAEVFGELLLCNLA*ELEPRH Trigger: GTGCCGAGGTTCGAGCTCCAAAGCCAGATTGCAAAG...GAGCAGCTCACCGAACACCTCTGCACCATCATCCAGCAGAACGAGCTCCGAAAG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000186402.2 |
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| CDS CCA 90 bp | GGTGCAGAGAGCAGCTGCTCTGGAAGCAATGAGGCTGACCCATCTTaGAGGCCAAGCTTTTGGCTCTGCTCTAGAAGGGCTTTTTCACGC | + |
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Preference number: 5 (lower is better) Translates to: GAESSCSGSNEADPS*RPSFWLCSRRAFSR Trigger: GCGTGAAAAAGCCCTTCTAGAGCAGAGCCAAAAGCTTGGCCTCCAAGATGGGTCAGCCTCATTGCTTCCAGAGCAGCTGCTCTCTGCACC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| CDS-3UTR CAA 90 bp | GGTAAAGCCACACATTCACAGCTTATCTATGGATGTGGATCAACTAGCCACAATAGCTCCTCCAGCTTCTaGGCCTTTCGGAGCTCGTTC | + |
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Preference number: 5 (lower is better) Translates to: GKATHSQLIYGCGSTSHNSSSSF*AFRSSF Trigger: GAACGAGCTCCGAAAGGCCAAGAAGCTGGAGGAGCT...ATTGTGGCTAGTTGATCCACATCCATAGATAAGCTGTGAATGTGTGGCTTTACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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| CDS-3UTR CAA 90 bp | CAAAGTCTCAGTGTTCTCTCACAAGTTAAGTTTGGCCAAGGACTAAGAAGTCATCTTTGCAATCTGGCTTaGGAGCTCGAACCTCGGCAC | + |
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Preference number: 5 (lower is better) Translates to: QSLSVLSQVKFGQGLRSHLCNLA*ELEPRH Trigger: GTGCCGAGGTTCGAGCTCCAAAGCCAGATTGCAAAG...ATGACTTCTTAGTCCTTGGCCAAACTTAACTTGTGAGAGAACACTGAGACTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| CDS-3UTR CAA 90 bp | CAAAGTCTCAGTGTTCTCTCACAAGTTAAGTTTGGCCAAGGACTAAGAAGTCATAACCTCCACCTCGAGTaGCAAAGCCTCCTCATCAGC | + |
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Preference number: 5 (lower is better) Translates to: QSLSVLSQVKFGQGLRSHNLHLE*QSLLIS Trigger: GCTGATGAGGAGGCTTTGCAACTCGAGGTGGAGGTT...ATGACTTCTTAGTCCTTGGCCAAACTTAACTTGTGAGAGAACACTGAGACTTTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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| CDS-3UTR CAA 90 bp | TTCCAACTTGTGTCTACTCACTCTAGTAGCATCCGGGTAGGTAAGTTAACCCGTGGAAGGAGCTTGCTTTaGAGGCTCATTGTTCTCTTC | + |
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Preference number: 5 (lower is better) Translates to: FQLVSTHSSSIRVGKLTRGRSLL*RLIVLF Trigger: GAAGAGAACAATGAGCCTCAAAAGCAAGCTCCTTCC...ACGGGTTAACTTACCTACCCGGATGCTACTAGAGTGAGTAGACACAAGTTGGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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| CDS-3UTR CAA 90 bp | GGTAAAGCCACACATTCACAGCTTATCTATGGATGTGGATCAACTAGCCACAATCAACATTTGCCTGGCTaGTCTGTCTCTGGGGAAGGA | + |
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Preference number: 5 (lower is better) Translates to: GKATHSQLIYGCGSTSHNQHLPG*SVSGEG Trigger: TCCTTCCCCAGAGACAGACAAGCCAGGCAAATGTTG...ATTGTGGCTAGTTGATCCACATCCATAGATAAGCTGTGAATGTGTGGCTTTACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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| CDS-3UTR CAA 90 bp | CAAGTTAAGTTTGGCCAAGGGCTAAGAAGCCATGTAGTTTTTCTTCTACCACTGACAGAAGCCATTTGTTaGGCTGCCTCTGCTTCCTGT | + |
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Preference number: 5 (lower is better) Translates to: QVKFGQGLRSHVVFLLPLTEAIC*AASASC Trigger: ACAGGAAGCAGAGGCAGCCAAACAAATGGCTTCTGT...CAGTGGTAGAAGAAAAACTACATGGCTTCTTAGCCCTTGGCCAAACTTAACTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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| CDS-3UTR CAA 90 bp | GGTAAAGCCACACATTCACAGCTTATCTATGGATGTGGATCAACTAGCCACAATGAGCTACTGCAACATTaGCCTGGCTTGTCTGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: GKATHSQLIYGCGSTSHNELLQH*PGLSVS Trigger: AGAGACAGACAAGCCAGGCAAATGTTGCAGTAGCTC...ATTGTGGCTAGTTGATCCACATCCATAGATAAGCTGTGAATGTGTGGCTTTACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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| CDS-3UTR CAA 90 bp | GGAAAACAGAAGAAAGTAAAGGTAAAGCCACACATTCACAGCTTATCTATGGATCTGTTAGCTCTCTGTTaGGGTGCAGAGAGCAGCTGC | + |
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Preference number: 5 (lower is better) Translates to: GKQKKVKVKPHIHSLSMDLLALC*GAESSC Trigger: GCAGCTGCTCTCTGCACCCAAACAGAGAGCTAACAG...ATCCATAGATAAGCTGTGAATGTGTGGCTTTACCTTTACTTTCTTCTGTTTTCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| CDS-3UTR CAA 90 bp | GTTAAGTTTGGCCAAGGACTAAGAAGTCATGTAGTTTTTCTTCTACCACTGTGCTCTTTCCGCAATGGCTaGAGCCAAAAGGGCTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: VKFGQGLRSHVVFLLPLCSFRNG*SQKGFL Trigger: AAGAAAGCCCTTTTGGCTCAAGCCATTGCGGAAAGA...GCACAGTGGTAGAAGAAAAACTACATGACTTCTTAGTCCTTGGCCAAACTTAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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| CDS-3UTR CAA 90 bp | TGTTGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCCTCTACAGAAGCCATTaGTTTGGCTGCCTCTGCTTC | + |
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Preference number: 5 (lower is better) Translates to: CWIINETCHSQSHFRNIFLYRSH*FGCLCF Trigger: GAAGCAGAGGCAGCCAAACAAATGGCTTCTGTAGAG...GAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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| CDS-3UTR CAA 90 bp | TGTTGGATAATCAATGAGACTTGCCACTCTCAGAGTCACTTTAGAAACATTTTCCTCTGGGGAAGGAGCTaGCTTTTGAGGCTCATTGTT | + |
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Preference number: 5 (lower is better) Translates to: CWIINETCHSQSHFRNIFLWGRS*LLRLIV Trigger: AACAATGAGCCTCAAAAGCAAGCTCCTTCCCCAGAG...GAAAATGTTTCTAAAGTGACTCTGAGAGTGGCAAGTCTCATTGATTATCCAACA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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| CDS-3UTR CAA 90 bp | CTCAGTGTTCTCTCACAAGTTAAGTTTGGCCAAGGACTAAGAAGTCATGTAGTTTTTTATGGTCTCTGCTaGGGTCTTCTTAGATCTTTC | + |
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Preference number: 5 (lower is better) Translates to: LSVLSQVKFGQGLRSHVVFYGLC*GLLRSF Trigger: GAAAGATCTAAGAAGACCCAAGCAGAGACCATAAAA...AACTACATGACTTCTTAGTCCTTGGCCAAACTTAACTTGTGAGAGAACACTGAG 40% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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| CDS CCA 90 bp | GCTTTCTTACGTTTATTTTTCTCTTCCATTAGTCGCTGTTCTTGTTaGAGGACTTCCCAACGAGATTTCTCTTGCAATTCCATTTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: AFLRLFFSSISRCSC*RTSQRDFSCNSIFF Trigger: AAAGAAAATGGAATTGCAAGAGAAATCTCGTTGGGAAGTCCTCCAACAAGAACAGCGACTAATGGAAGAGAAAAATAAACGTAAGAAAGC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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| CDS CAA 72 bp | GGGACTGGGGGCCACAGGGGAAGGAGAGCGTGGCTTTaGACTGTTAGCTCTCTGTTTGGGTGCAGAGAGCAG | + |
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Preference number: 6 (lower is better) Translates to: GTGGHRGRRAWL*TVSSLFGCREQ Trigger: CTGCTCTCTGCACCCAAACAGAGAGCTAACAGTCAAAAGCCACGCTCTCCTTCCCCTGTGGCCCCCAGTCCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| CDS CCA 72 bp | AGCAGCTGCTCTGGAAGCAATGAGGCTGACCCATCTTaGAGGCCAAGCTTTTGGCTCTGCTCTAGAAGGGCT | + |
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Preference number: 6 (lower is better) Translates to: SSCSGSNEADPS*RPSFWLCSRRA Trigger: AGCCCTTCTAGAGCAGAGCCAAAAGCTTGGCCTCCAAGATGGGTCAGCCTCATTGCTTCCAGAGCAGCTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000045138.6 ENSMUST00000186402.2 |
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| CDS CAA 72 bp | CTCTGCTTGGGTCTTCTTAGATCTTTCCGCAATGGCTaGAGCCAAAAGGGCTTTCTTACGTTTATTTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: LCLGLLRSFRNG*SQKGFLTFIFL Trigger: GAGAAAAATAAACGTAAGAAAGCCCTTTTGGCTCAAGCCATTGCGGAAAGATCTAAGAAGACCCAAGCAGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000045138.6 |
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