Pregenerated sensors for GNRHR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000029255Ensembl transcript IDs: ENSMUST00000031172.9, ENSMUST00000094654.3, ENSMUST00000113372.2
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTGGCCATGGAGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTTaGTTAGTCTGCTTTCTTACAGAACCCAGGGCCCCCAGCCCAGGG | + |
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Preference number: 1 (lower is better) Translates to: SGHGGVLLTGLLPVV*LVCFLTEPRAPSPG Trigger: CCCTGGGCTGGGGGCCCTGGGTTCTGTAAGAAAGCAGACTAAGCAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCTCCATGGCCAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR CCA 90 bp | GGAACTCAAGTAGTACAGGAACCTGGAGGCAGGAGCCGATGCTTCTaGCCATGGAGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTTG | + |
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Preference number: 1 (lower is better) Translates to: GTQVVQEPGGRSRCF*PWRGAAYWPASCSL Trigger: CAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCATCGGCTCCTGCCTCCAGGTTCCTGTACTACTTGAGTTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR CCA 90 bp | CAAGTAGTACAGGAACCTGGAGGCAGGAGCCGATGCTTCTGGCCATaGAGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTTGCTTAGT | + |
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Preference number: 1 (lower is better) Translates to: QVVQEPGGRSRCFWP*RGAAYWPASCSLLS Trigger: ACTAAGCAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCATCGGCTCCTGCCTCCAGGTTCCTGTACTACTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR TCA 90 bp | GAGTTCTTGTGTAGTCTCCCAACTACAAAGAGAAATACCCATATATaGGTGGGTCGAAGCACGGGTTTAGGAAAGCAAAGAGAAAGAAAA | + |
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Preference number: 1 (lower is better) Translates to: EFLCSLPTTKRNTHI*VGRSTGLGKQRERK Trigger: TTTTCTTTCTCTTTGCTTTCCTAAACCCGTGCTTCGACCCACTCATATATGGGTATTTCTCTTTGTAGTTGGGAGACTACACAAGAACTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
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| 3UTR GCA 90 bp | AAGTTGAAGAAGAAAGGATTTATTCAGCTTATATTTCTACATCACTaGTCTTTACCAAAGGGAAGCCAGGTTAGGAACTCAAGTAGTACA | + |
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Preference number: 1 (lower is better) Translates to: KLKKKGFIQLIFLHH*SLPKGSQVRNSSST Trigger: TGTACTACTTGAGTTCCTAACCTGGCTTCCCTTTGGTAAAGAGCAGTGATGTAGAAATATAAGCTGAATAAATCCTTTCTTCTTCAACTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR CAA 90 bp | TTCTGGCCATGGAGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTaGCTTAGTCTGCTTTCTTACAGAACCCAGGGCCCCCAGCCCAGG | + |
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Preference number: 2 (lower is better) Translates to: FWPWRGAAYWPASCS*LSLLSYRTQGPQPR Trigger: CCTGGGCTGGGGGCCCTGGGTTCTGTAAGAAAGCAGACTAAGCAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCTCCATGGCCAGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR-3UTR TCA 90 bp | TCTGCTTTCTTACAGAACCCAGGGCCCCCAGCCCAGGGGTGGCGCCACCACAATTTCCACGGTGAAAAATaGGACCATGAGGTGTCAGTA | + |
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Preference number: 2 (lower is better) Translates to: SAFLQNPGPPAQGWRHHNFHGEK*DHEVSV Trigger: TACTGACACCTCATGGTCTCATTTTTCACCGTGGAA...ATTGTGGTGGCGCCACCCCTGGGCTGGGGGCCCTGGGTTCTGTAAGAAAGCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR-3UTR CCA 90 bp | AGGCAGGAGCCGATGCTTCTGGCCATGGAGGGGTGCTGCTTACTGGCCTGCTTCTACAGCTGGATCTCATaGAAGGATTTCCTCCACCAA | + |
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Preference number: 2 (lower is better) Translates to: RQEPMLLAMEGCCLLACFYSWIS*KDFLHQ Trigger: TTGGTGGAGGAAATCCTTCCATGAGATCCAGCTGTA...GAAGCAGGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCATCGGCTCCTGCCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR-3UTR CCA 90 bp | GGCCATGGAGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTTGCTTAGTCTGCTGGCACCTTATGAAGTaGCTACACCACTGTCGAAAA | + |
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Preference number: 2 (lower is better) Translates to: GHGGVLLTGLLPVVCLVCWHLMK*LHHCRK Trigger: TTTTCGACAGTGGTGTAGCCACTTCATAAGGTGCCA...GCAGACTAAGCAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCTCCATGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR-3UTR TCA 90 bp | AGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTTGCTTAGTCTGCTTTCTTACAGCAGTGGCACCTTATaGAGTGGCTACACCACTGTC | + |
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Preference number: 2 (lower is better) Translates to: RGAAYWPASCSLLSLLSYSSGTL*SGYTTV Trigger: GACAGTGGTGTAGCCACTTCATAAGGTGCCACTGCT...GTAAGAAAGCAGACTAAGCAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR-3UTR TCA 90 bp | GGCCATGGAGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTTGCTTAGTCTGCCCATTGATCACTAGTTaGAAAAATGCCTTACAGCTG | + |
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Preference number: 2 (lower is better) Translates to: GHGGVLLTGLLPVVCLVCPLITS*KNALQL Trigger: CAGCTGTAAGGCATTTTTTCAACTAGTGATCAATGG...GCAGACTAAGCAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCTCCATGGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR-3UTR CCA 90 bp | TGCTTCTGGCCATGGAGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTTGCTTAAAATGCCTTACAGCTaGATCTCATGGAAGGATTTC | + |
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Preference number: 2 (lower is better) Translates to: CFWPWRGAAYWPASCSLLKMPYS*ISWKDF Trigger: GAAATCCTTCCATGAGATCCAGCTGTAAGGCATTTT...AAGCAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR-3UTR CCA 90 bp | GAAAGGATTTATTCAGCTTATATTTCTACATCACTGCTCTTTACCAAAGGGAAGAGGGGTGCTGCTTACTaGCCTGCTTCCTGTAGTTTG | + |
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Preference number: 2 (lower is better) Translates to: ERIYSAYISTSLLFTKGKRGAAY*PASCSL Trigger: CAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCT...CTTCCCTTTGGTAAAGAGCAGTGATGTAGAAATATAAGCTGAATAAATCCTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR-3UTR CCA 90 bp | TGTGCTGATGTTATGAATATGTTGTGTTTTCCCAGCCTTTGTTTTTGGTACTGTTCTCAGCCGAGCTCTTaGGATATTATTCTTGGACTG | + |
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Preference number: 2 (lower is better) Translates to: CADVMNMLCFPSLCFWYCSQPSS*DIILGL Trigger: CAGTCCAAGAATAATATCCCAAGAGCTCGGCTGAGA...ACAGTACCAAAAACAAAGGCTGGGAAAACACAACATATTCATAACATCAGCACA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
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| 3UTR-3UTR TCA 90 bp | GCCTTGAGTTCCCTTAATACATCAAACCTCCTCTTTCTGTTTGTATATTTGCTTGTGTGTCAAAAGCTTTaGGTTTATTCTCAATTGGTG | + |
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Preference number: 2 (lower is better) Translates to: ALSSLNTSNLLFLFVYLLVCQKL*VYSQLV Trigger: CACCAATTGAGAATAAACTCAAAGCTTTTGACACAC...AAGCAAATATACAAACAGAAAGAGGAGGTTTGATGTATTAAGGGAACTCAAGGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
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| 3UTR CCA 72 bp | CAGGAACCTGGAGGCAGGAGCCGATGCTTCTGGCCATaGAGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGT | + |
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Preference number: 3 (lower is better) Translates to: QEPGGRSRCFWP*RGAAYWPASCS Trigger: ACTACAGGAAGCAGGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCATCGGCTCCTGCCTCCAGGTTCCTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR CCA 72 bp | GTAGTACAGGAACCTGGAGGCAGGAGCCGATGCTTCTaGCCATGGAGGGGTGCTGCTTACTGGCCTGCTTCC | + |
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Preference number: 3 (lower is better) Translates to: VVQEPGGRSRCF*PWRGAAYWPAS Trigger: GGAAGCAGGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCATCGGCTCCTGCCTCCAGGTTCCTGTACTAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR GCA 72 bp | ACTCAAGTAGTACAGGAACCTGGAGGCAGGAGCCGATaGTTCTGGCCATGGAGGGGTGCTGCTTACTGGCCT | + |
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Preference number: 3 (lower is better) Translates to: TQVVQEPGGRSR*FWPWRGAAYWP Trigger: AGGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCATCGGCTCCTGCCTCCAGGTTCCTGTACTACTTGAGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR CCA 72 bp | GGAAGCCAGGTTAGGAACTCAAGTAGTACAGGAACCTaGAGGCAGGAGCCGATGCTTCTGGCCATGGAGGGG | + |
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Preference number: 3 (lower is better) Translates to: GSQVRNSSSTGT*RQEPMLLAMEG Trigger: CCCCTCCATGGCCAGAAGCATCGGCTCCTGCCTCCAGGTTCCTGTACTACTTGAGTTCCTAACCTGGCTTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR GCA 72 bp | CTGCTTACTGGCCTGCTTCCTGTAGTTTGCTTAGTCTaGTTTCTTACAGAACCCAGGGCCCCCAGCCCAGGG | + |
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Preference number: 3 (lower is better) Translates to: LLTGLLPVVCLV*FLTEPRAPSPG Trigger: CCCTGGGCTGGGGGCCCTGGGTTCTGTAAGAAAGCAGACTAAGCAAACTACAGGAAGCAGGCCAGTAAGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR GCA 72 bp | GGAGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTTaGTTAGTCTGCTTTCTTACAGAACCCAGGGCCCCC | + |
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Preference number: 3 (lower is better) Translates to: GGVLLTGLLPVV*LVCFLTEPRAP Trigger: GGGGGCCCTGGGTTCTGTAAGAAAGCAGACTAAGCAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCTCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR CCA 72 bp | TTGGGACAACATCAACCTGTTTTTCCTGCTAACCTATaGACAGTGATACTTCTGTCTCTGGGCTTTAGGTCT | + |
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Preference number: 3 (lower is better) Translates to: LGQHQPVFPANL*TVILLSLGFRS Trigger: AGACCTAAAGCCCAGAGACAGAAGTATCACTGTCCATAGGTTAGCAGGAAAAACAGGTTGATGTTGTCCCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
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| 3UTR TCA 72 bp | GAAAGCAAAGAGAAAGAAAAAGTGATTCACTGGCTCTaGCACCCTGTTCAACATTTCTGGATCAAACCAGTA | + |
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Preference number: 3 (lower is better) Translates to: ESKEKEKVIHWL*HPVQHFWIKPV Trigger: TACTGGTTTGATCCAGAAATGTTGAACAGGGTGTCAGAGCCAGTGAATCACTTTTTCTTTCTCTTTGCTTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
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| 3UTR GCA 72 bp | AAGAAAGGATTTATTCAGCTTATATTTCTACATCACTaGTCTTTACCAAAGGGAAGCCAGGTTAGGAACTCA | + |
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Preference number: 3 (lower is better) Translates to: KKGFIQLIFLHH*SLPKGSQVRNS Trigger: TGAGTTCCTAACCTGGCTTCCCTTTGGTAAAGAGCAGTGATGTAGAAATATAAGCTGAATAAATCCTTTCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR-3UTR CAA 90 bp | GCCTTGAGTTCCCTTAATACATCAAACCTCCTCTTTCTGTTTGTATATTTGCTTGATGTTATGAATATGTaGTGTTTTCCCAGCCTTTGT | + |
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Preference number: 3 (lower is better) Translates to: ALSSLNTSNLLFLFVYLLDVMNM*CFPSLC Trigger: ACAAAGGCTGGGAAAACACAACATATTCATAACATC...AAGCAAATATACAAACAGAAAGAGGAGGTTTGATGTATTAAGGGAACTCAAGGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
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| 3UTR TCA 72 bp | CTGTCAGCTAACATAAACCCTATATACTGTACAGTATaGAATATTCTAAGGAATAGTCTAACAGTCTATGGG | + |
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Preference number: 3 (lower is better) Translates to: LSANINPIYCTV*NILRNSLTVYG Trigger: CCCATAGACTGTTAGACTATTCCTTAGAATATTTCATACTGTACAGTATATAGGGTTTATGTTAGCTGACAG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
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| CDS-3UTR TCA 90 bp | TCTGCTTTCTTACAGAACCCAGGGCCCCCAGCCCAGGGGTGGCGCCACCACAATCAGCAAGGGGCTGAGTaGTGGCCAGGGAGCGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: SAFLQNPGPPAQGWRHHNQQGAE*WPGSGP Trigger: TGGACCGCTCCCTGGCCATCACTCAGCCCCTTGCTG...ATTGTGGTGGCGCCACCCCTGGGCTGGGGGCCCTGGGTTCTGTAAGAAAGCAGA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR TCA 90 bp | CTTACAGAACCCAGGGCCCCCAGCCCAGGGGTGGCGCCACCACAATGGGCTGGCCCTTTCTTCCTCTTCTaGGTCCACTTCTGCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: LTEPRAPSPGVAPPQWAGPFFLF*VHFCSF Trigger: GAAGCTGCAGAAGTGGACTCAGAAGAGGAAGAAAGG...GCCAGCCCATTGTGGTGGCGCCACCCCTGGGCTGGGGGCCCTGGGTTCTGTAAG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR TCA 90 bp | CTGGAGGCAGGAGCCGATGCTTCTGGCCATGGAGGGGTGCTGCTTACTGGCCTGTCCCATCCAGTGGCATaGCGATCAGAGTCTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: LEAGADASGHGGVLLTGLSHPVA*RSESPA Trigger: TGCTGGAGACTCTGATCGTCATGCCACTGGATGGGA...CAGGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCATCGGCTCCTGCCTCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR CCA 90 bp | CTGGAGGCAGGAGCCGATGCTTCTGGCCATGGAGGGGTGCTGCTTACTGGCCTGCTGATGCCACCACTGTaGAAAGCTGCAGTGGGTCAC | + |
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Preference number: 4 (lower is better) Translates to: LEAGADASGHGGVLLTGLLMPPL*KAAVGH Trigger: GTGACCCACTGCAGCTTTCCACAGTGGTGGCATCAG...CAGGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCATCGGCTCCTGCCTCCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR CCA 90 bp | TCTGCTTTCTTACAGAACCCAGGGCCCCCAGCCCAGGGGTGGCGCCACCACAATCCACATCCCATCCAGTaGCATGACGATCAGAGTCTC | + |
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Preference number: 4 (lower is better) Translates to: SAFLQNPGPPAQGWRHHNPHPIQ*HDDQSL Trigger: GAGACTCTGATCGTCATGCCACTGGATGGGATGTGG...ATTGTGGTGGCGCCACCCCTGGGCTGGGGGCCCTGGGTTCTGTAAGAAAGCAGA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR TCA 90 bp | GTCCAGCAGACGACAAAGGAGGTAGCGAATGCGACTGTCATCTTTAGCGTTCTCCAGCAAGGGGCTGAGTaGTGGCCAGGGAGCGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: VQQTTKEVANATVIFSVLQQGAE*WPGSGP Trigger: TGGACCGCTCCCTGGCCATCACTCAGCCCCTTGCTG...GAGAACGCTAAAGATGACAGTCGCATTCGCTACCTCCTTTGTCGTCTGCTGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
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| CDS-3UTR GCA 90 bp | CTGGAGGCAGGAGCCGATGCTTCTGGCCATGGAGGGGTGCTGCTTACTGGCCTGGTTCAAGCTTGCTGTTaGTTTGTACAGCAAGGGGCT | + |
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Preference number: 4 (lower is better) Translates to: LEAGADASGHGGVLLTGLVQACC*FVQQGA Trigger: AGCCCCTTGCTGTACAAAGCAACAGCAAGCTTGAAC...CAGGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCATCGGCTCCTGCCTCCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR CCA 90 bp | GCTTCCTGTAGTTTGCTTAGTCTGCTTTCTTACAGAACCCAGGGCCCCCAGCCCGGCCGAGCAGTGATTTaGGTCCTGCTCAAGAGATGC | + |
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Preference number: 4 (lower is better) Translates to: ASCSLLSLLSYRTQGPQPGRAVI*VLLKRC Trigger: GCATCTCTTGAGCAGGACCCAAATCACTGCTCGGCC...GGGCTGGGGGCCCTGGGTTCTGTAAGAAAGCAGACTAAGCAAACTACAGGAAGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| 3UTR CAA 72 bp | TGGAGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTaGCTTAGTCTGCTTTCTTACAGAACCCAGGGCCCC | + |
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Preference number: 4 (lower is better) Translates to: WRGAAYWPASCS*LSLLSYRTQGP Trigger: GGGGCCCTGGGTTCTGTAAGAAAGCAGACTAAGCAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCTCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR TCA 90 bp | ACCTGGAGGCAGGAGCCGATGCTTCTGGCCATGGAGGGGTGCTGCTTACTGGCCTCCGTTTGTCTACAGTaGTTCTTAGATCTAAGGAAT | + |
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Preference number: 4 (lower is better) Translates to: TWRQEPMLLAMEGCCLLASVCLQ*FLDLRN Trigger: ATTCCTTAGATCTAAGAATCACTGTAGACAAACGGA...GGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCATCGGCTCCTGCCTCCAGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR CCA 90 bp | GCTTCCTGTAGTTTGCTTAGTCTGCTTTCTTACAGAACCCAGGGCCCCCAGCCCTGTGGAAAGCTGCAGTaGGTCACACATTGCGAGAAG | + |
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Preference number: 4 (lower is better) Translates to: ASCSLLSLLSYRTQGPQPCGKLQ*VTHCEK Trigger: CTTCTCGCAATGTGTGACCCACTGCAGCTTTCCACA...GGGCTGGGGGCCCTGGGTTCTGTAAGAAAGCAGACTAAGCAAACTACAGGAAGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR CCA 90 bp | GGCCATGGAGGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTTGCTTAGTCTGCCACCATCATGAAAGCTaGGGCATACATAGAGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: GHGGVLLTGLLPVVCLVCHHHES*GIHREE Trigger: CTCTTCTCTATGTATGCCCCAGCTTTCATGATGGTG...GCAGACTAAGCAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCCTCCATGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR CCA 90 bp | GCTTCCTGTAGTTTGCTTAGTCTGCTTTCTTACAGAACCCAGGGCCCCCAGCCCGAGTCTCCAGCAGGTTaGCTAAGGTCAAATGCTTTA | + |
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Preference number: 4 (lower is better) Translates to: ASCSLLSLLSYRTQGPQPESPAG*LRSNAL Trigger: TAAAGCATTTGACCTTAGCCAACCTGCTGGAGACTC...GGGCTGGGGGCCCTGGGTTCTGTAAGAAAGCAGACTAAGCAAACTACAGGAAGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR TCA 90 bp | CACCAAGGCTTCTTTCTCTCTGATGACTCTAGCTTGTGTCGAGTTGACACAAAAAGGGGATGCTGTTGTTaGTGGCCGAGCAGTGATTTG | + |
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Preference number: 4 (lower is better) Translates to: HQGFFLSDDSSLCRVDTKRGCCC*WPSSDL Trigger: CAAATCACTGCTCGGCCATCAACAACAGCATCCCCT...TTTTGTGTCAACTCGACACAAGCTAGAGTCATCAGAGAGAAAGAAGCCTTGGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR TCA 90 bp | AACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCCAGCAAGGGGCTGAGTaGTGGCCAGGGAGCGGTCCA | + |
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Preference number: 4 (lower is better) Translates to: NLKPCLVYKCVKSFEFILQQGAE*WPGSGP Trigger: TGGACCGCTCCCTGGCCATCACTCAGCCCCTTGCTG...GAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
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| 3UTR CAA 72 bp | CTCCACCAAGGCTTCTTTCTCTCTGATGACTCTAGCTaGTGTCGAGTTGACACAAAACCAGTCGGTACAGTT | + |
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Preference number: 4 (lower is better) Translates to: LHQGFFLSDDSS*CRVDTKPVGTV Trigger: AACTGTACCGACTGGTTTTGTGTCAACTCGACACAAGCTAGAGTCATCAGAGAGAAAGAAGCCTTGGTGGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
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| CDS-3UTR TCA 90 bp | CCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCAATTGGTGCATCCCATCCAGTGGCATaGCGATCAGAGTCTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: PALYISVSKALSLFSIGASHPVA*RSESPA Trigger: TGCTGGAGACTCTGATCGTCATGCCACTGGATGGGA...TGCACCAATTGAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
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| CDS-3UTR CCA 90 bp | CAACAAACTCTGTACAAAAACAAGGTTGATAATCTAACCTTAAACCCTGCCTTGGGCCGAGCAGTGATTTaGGTCCTGCTCAAGAGATGC | + |
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Preference number: 4 (lower is better) Translates to: QQTLYKNKVDNLTLNPALGRAVI*VLLKRC Trigger: GCATCTCTTGAGCAGGACCCAAATCACTGCTCGGCC...CAAGGCAGGGTTTAAGGTTAGATTATCAACCTTGTTTTTGTACAGAGTTTGTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
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| CDS-3UTR TCA 90 bp | GCCTTGAGTTCCCTTAATACATCAAACCTCCTCTTTCTGTTTGTATATTTGCTTAGGGGATGCTGTTGTTaGTGGCCGAGCAGTGATTTG | + |
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Preference number: 4 (lower is better) Translates to: ALSSLNTSNLLFLFVYLLRGCCC*WPSSDL Trigger: CAAATCACTGCTCGGCCATCAACAACAGCATCCCCT...AAGCAAATATACAAACAGAAAGAGGAGGTTTGATGTATTAAGGGAACTCAAGGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
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| CDS-3UTR TCA 90 bp | AACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCTCCCATCCAGTGGCATaGCGATCAGAGTCTCCAGCA | + |
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Preference number: 4 (lower is better) Translates to: NLKPCLVYKCVKSFEFILSHPVA*RSESPA Trigger: TGCTGGAGACTCTGATCGTCATGCCACTGGATGGGA...GAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
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| CDS-3UTR CCA 90 bp | ACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCAGGCCGAGCAGTGATTTaGGTCCTGCTCAAGAGATGC | + |
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Preference number: 4 (lower is better) Translates to: TLNPALYISVSKALSLFSGRAVI*VLLKRC Trigger: GCATCTCTTGAGCAGGACCCAAATCACTGCTCGGCC...TGAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
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| CDS-3UTR CCA 90 bp | TGTGCTGATGTTATGAATATGTTGTGTTTTCCCAGCCTTTGTTTTTGGTACTGTCCACATCCCATCCAGTaGCATGACGATCAGAGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: CADVMNMLCFPSLCFWYCPHPIQ*HDDQSL Trigger: GAGACTCTGATCGTCATGCCACTGGATGGGATGTGG...ACAGTACCAAAAACAAAGGCTGGGAAAACACAACATATTCATAACATCAGCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
||
| CDS-3UTR CCA 90 bp | AACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCCTGATGCCACCACTGTaGAAAGCTGCAGTGGGTCAC | + |
|
Preference number: 4 (lower is better) Translates to: NLKPCLVYKCVKSFEFILLMPPL*KAAVGH Trigger: GTGACCCACTGCAGCTTTCCACAGTGGTGGCATCAG...GAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS-3UTR TCA 90 bp | ACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCAAGGGGATGCTGTTGTTaGTGGCCGAGCAGTGATTTG | + |
|
Preference number: 4 (lower is better) Translates to: TLNPALYISVSKALSLFSRGCCC*WPSSDL Trigger: CAAATCACTGCTCGGCCATCAACAACAGCATCCCCT...TGAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
||
| CDS-3UTR CCA 90 bp | GATAATCTAACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTCCACATCCCATCCAGTaGCATGACGATCAGAGTCTC | + |
|
Preference number: 4 (lower is better) Translates to: DNLTLNPALYISVSKALSPHPIQ*HDDQSL Trigger: GAGACTCTGATCGTCATGCCACTGGATGGGATGTGG...ACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTTAGATTATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
||
| CDS-3UTR TCA 90 bp | AAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCAATTGGCCTTTCTTCCTCTTCTaGGTCCACTTCTGCAGCTTC | + |
|
Preference number: 4 (lower is better) Translates to: KPCLVYKCVKSFEFILNWPFFLF*VHFCSF Trigger: GAAGCTGCAGAAGTGGACTCAGAAGAGGAAGAAAGG...CCAATTGAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
||
| CDS-3UTR TCA 90 bp | AACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCAGAGGCAGCCGAAGGTaGAAAAGTTGTAGAAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: NLKPCLVYKCVKSFEFILRGSRR*KSCRRP Trigger: AGGCCTTCTACAACTTTTTCACCTTCGGCTGCCTCT...GAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS-3UTR TCA 90 bp | GAAAGGATTTATTCAGCTTATATTTCTACATCACTGCTCTTTACCAAAGGGAAGAGAGGCAGCCGAAGGTaGAAAAGTTGTAGAAGGCCT | + |
|
Preference number: 4 (lower is better) Translates to: ERIYSAYISTSLLFTKGKRGSRR*KSCRRP Trigger: AGGCCTTCTACAACTTTTTCACCTTCGGCTGCCTCT...CTTCCCTTTGGTAAAGAGCAGTGATGTAGAAATATAAGCTGAATAAATCCTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
||
| CDS-3UTR GCA 90 bp | CCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCAATTGGTGCAGTTCAAGCTTGCTGTTaGTTTGTACAGCAAGGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: PALYISVSKALSLFSIGAVQACC*FVQQGA Trigger: AGCCCCTTGCTGTACAAAGCAACAGCAAGCTTGAAC...TGCACCAATTGAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
||
| CDS-3UTR CCA 90 bp | AACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCTGTGGAAAGCTGCAGTaGGTCACACATTGCGAGAAG | + |
|
Preference number: 4 (lower is better) Translates to: NLKPCLVYKCVKSFEFILCGKLQ*VTHCEK Trigger: CTTCTCGCAATGTGTGACCCACTGCAGCTTTCCACA...GAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS-3UTR GCA 90 bp | AACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCGTTCAAGCTTGCTGTTaGTTTGTACAGCAAGGGGCT | + |
|
Preference number: 4 (lower is better) Translates to: NLKPCLVYKCVKSFEFILVQACC*FVQQGA Trigger: AGCCCCTTGCTGTACAAAGCAACAGCAAGCTTGAAC...GAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
||
| CDS-3UTR CCA 90 bp | GAAAATATCTATCCCTTTAAATTCCTCCACTATGTAGGGATGTGTCACAATCTGCACCATCATGAAAGCTaGGGCATACATAGAGAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: ENIYPFKFLHYVGMCHNLHHHES*GIHREE Trigger: CTCTTCTCTATGTATGCCCCAGCTTTCATGATGGTG...CAGATTGTGACACATCCCTACATAGTGGAGGAATTTAAAGGGATAGATATTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
||
| CDS-3UTR GCA 90 bp | GATAATCTAACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTGATTCAGCTGTAGTTTaGGTGGGTCTTGATGAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: DNLTLNPALYISVSKALSDSAVV*VGLDEG Trigger: TCCTTCATCAAGACCCACGCAAACTACAGCTGAATC...ACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTTAGATTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS-3UTR GCA 90 bp | ACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCACAAACCAGTACCAAATaGCTAGGACATAGTAGGGAG | + |
|
Preference number: 4 (lower is better) Translates to: TLNPALYISVSKALSLFSQTSTK*LGHSRE Trigger: CTCCCTACTATGTCCTAGGCATTTGGTACTGGTTTG...TGAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS-3UTR CCA 90 bp | GATAATCTAACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTGAGTCTCCAGCAGGTTaGCTAAGGTCAAATGCTTTA | + |
|
Preference number: 4 (lower is better) Translates to: DNLTLNPALYISVSKALSESPAG*LRSNAL Trigger: TAAAGCATTTGACCTTAGCCAACCTGCTGGAGACTC...ACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTTAGATTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
||
| CDS-3UTR CCA 90 bp | GATAATCTAACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTCACCATCATGAAAGCTaGGGCATACATAGAGAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: DNLTLNPALYISVSKALSHHHES*GIHREE Trigger: CTCTTCTCTATGTATGCCCCAGCTTTCATGATGGTG...ACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTTAGATTATC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
||
| CDS-3UTR CCA 90 bp | AACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCTCTCAGCCGAGCTCTTaGGATATTATTCTTGGACTG | + |
|
Preference number: 4 (lower is better) Translates to: NLKPCLVYKCVKSFEFILSQPSS*DIILGL Trigger: CAGTCCAAGAATAATATCCCAAGAGCTCGGCTGAGA...GAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS-3UTR CCA 90 bp | AAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCAATTGGTCAGCTGTAGTTCTGTaGTCCTGCAAAGACAATGCT | + |
|
Preference number: 4 (lower is better) Translates to: KPCLVYKCVKSFEFILNWSAVVL*SCKDNA Trigger: AGCATTGTCTTTGCAGGACCACAGAACTACAGCTGA...CCAATTGAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113372.2 |
||
| CDS-3UTR TCA 90 bp | GATAATCTAACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTAAGAGAAAGAAAAAGTaGTTCACTGGCTCTGACACC | + |
|
Preference number: 4 (lower is better) Translates to: DNLTLNPALYISVSKALSKRKKK*FTGSDT Trigger: GGTGTCAGAGCCAGTGAATCACTTTTTCTTTCTCTT...ACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTTAGATTATC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS-3UTR TCA 90 bp | AACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCAATTGGTATATTATTCTTGGACTaGTTCAGCTGTAGTTTGCGT | + |
|
Preference number: 4 (lower is better) Translates to: NPALYISVSKALSLFSIGILFLD*FSCSLR Trigger: ACGCAAACTACAGCTGAATCAGTCCAAGAATAATAT...ACCAATTGAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS-3UTR CCA 90 bp | AACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCAATTGGTTTGGGATATTATTCTTaGACTGATTCAGCTGTAGTT | + |
|
Preference number: 4 (lower is better) Translates to: NPALYISVSKALSLFSIGLGYYS*TDSAVV Trigger: AACTACAGCTGAATCAGTCCAAGAATAATATCCCAA...ACCAATTGAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTT 34% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS-3UTR CAA 90 bp | ACCTGGAGGCAGGAGCCGATGCTTCTGGCCATGGAGGGGTGCTGCTTACTGGCCAACAAGAAGGAAGCATaGAAGGCAGTAGAGAGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: TWRQEPMLLAMEGCCLLANKKEA*KAVESR Trigger: CCTACTCTCTACTGCCTTCAATGCTTCCTTCTTGTT...GGCCAGTAAGCAGCACCCCTCCATGGCCAGAAGCATCGGCTCCTGCCTCCAGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
||
| CDS CCA 90 bp | GCAGCCGAAGGTGAAAAAGTTGTAGAAGGCCTGATGCCACCACTGTaGAAAGCTGCAGTGGGTCACACATTGCGAGAAGACTGTGGGCCC | + |
|
Preference number: 5 (lower is better) Translates to: AAEGEKVVEGLMPPL*KAAVGHTLREDCGP Trigger: GGGCCCACAGTCTTCTCGCAATGTGTGACCCACTGCAGCTTTCCACAGTGGTGGCATCAGGCCTTCTACAACTTTTTCACCTTCGGCTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000094654.3 |
||
| CDS CCA 90 bp | GATGGCCAGGGAGCGGTCCAGGCTAATCACCACCATCATGAAAGCTaGGGCATACATAGAGAAGAGCTTCAGATAGCTGAGAACTTTGCA | + |
|
Preference number: 5 (lower is better) Translates to: DGQGAVQANHHHHES*GIHREELQIAENFA Trigger: TGCAAAGTTCTCAGCTATCTGAAGCTCTTCTCTATGTATGCCCCAGCTTTCATGATGGTGGTGATTAGCCTGGACCGCTCCCTGGCCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031172.9 ENSMUST00000094654.3 ENSMUST00000113372.2 |
||
| CDS CCA 90 bp | CTGTCATCTTTAGCGTTCTCAGCCGAGCTCTTGGGATATTATTCTTaGACTGATTCAGCTGTAGTTTGCGTGGGTCTTGATGAAGGACTC | + |
|
Preference number: 5 (lower is better) Translates to: LSSLAFSAELLGYYS*TDSAVVCVGLDEGL Trigger: GAGTCCTTCATCAAGACCCACGCAAACTACAGCTGAATCAGTCCAAGAATAATATCCCAAGAGCTCGGCTGAGAACGCTAAAGATGACAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS-3UTR CAA 90 bp | GGGGTGCTGCTTACTGGCCTGCTTCCTGTAGTTTGCTTAGTCTGCTTTCTTACAATAGACTGTTCAAGCTaGCTGTTGCTTTGTACAGCA | + |
|
Preference number: 5 (lower is better) Translates to: GVLLTGLLPVVCLVCFLTIDCSS*LLLCTA Trigger: TGCTGTACAAAGCAACAGCAAGCTTGAACAGTCTAT...TGTAAGAAAGCAGACTAAGCAAACTACAGGAAGCAGGCCAGTAAGCAGCACCCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
||
| CDS CCA 90 bp | CGTTTGTCTACAGTGATTCTTAGATCTAAGGAATACCGTACTGCGTaGGTCTTGATGAAGGACTCGCGTGAGAGCAAAGATGATTTTGGC | + |
|
Preference number: 5 (lower is better) Translates to: RLSTVILRSKEYRTA*VLMKDSRESKDDFG Trigger: GCCAAAATCATCTTTGCTCTCACGCGAGTCCTTCATCAAGACCCACGCAGTACGGTATTCCTTAGATCTAAGAATCACTGTAGACAAACG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
||
| CDS-3UTR CAA 90 bp | TGCCTTACAGCTGGATCTCATGGAAGGATTTCCTCCACCAAGGCTTCTTTCTCTAAGATGATTTTGGCATaGCAGATTAGCATGATGAGG | + |
|
Preference number: 5 (lower is better) Translates to: CLTAGSHGRISSTKASFSKMILA*QISMMR Trigger: CCTCATCATGCTAATCTGCAATGCCAAAATCATCTT...AGAGAAAGAAGCCTTGGTGGAGGAAATCCTTCCATGAGATCCAGCTGTAAGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
||
| CDS-3UTR CAA 90 bp | CAACAAACTCTGTACAAAAACAAGGTTGATAATCTAACCTTAAACCCTGCCTTGAACAAGAAGGAAGCATaGAAGGCAGTAGAGAGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: QQTLYKNKVDNLTLNPALNKKEA*KAVESR Trigger: CCTACTCTCTACTGCCTTCAATGCTTCCTTCTTGTT...CAAGGCAGGGTTTAAGGTTAGATTATCAACCTTGTTTTTGTACAGAGTTTGTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
||
| CDS-3UTR CAA 90 bp | ACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTTTATTCTCAAACAAGAAGGAAGCATaGAAGGCAGTAGAGAGTAGG | + |
|
Preference number: 5 (lower is better) Translates to: TLNPALYISVSKALSLFSNKKEA*KAVESR Trigger: CCTACTCTCTACTGCCTTCAATGCTTCCTTCTTGTT...TGAGAATAAACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
||
| CDS-3UTR CAA 90 bp | GATAATCTAACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTATAGACTGTTCAAGCTaGCTGTTGCTTTGTACAGCA | + |
|
Preference number: 5 (lower is better) Translates to: DNLTLNPALYISVSKALSIDCSS*LLLCTA Trigger: TGCTGTACAAAGCAACAGCAAGCTTGAACAGTCTAT...ACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTTAGATTATC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000113372.2 |
||
| CDS-3UTR CAA 90 bp | GATAATCTAACCTTAAACCCTGCCTTGTATATAAGTGTGTCAAAAGCTTTGAGTAAGATGATTTTGGCATaGCAGATTAGCATGATGAGG | + |
|
Preference number: 5 (lower is better) Translates to: DNLTLNPALYISVSKALSKMILA*QISMMR Trigger: CCTCATCATGCTAATCTGCAATGCCAAAATCATCTT...ACTCAAAGCTTTTGACACACTTATATACAAGGCAGGGTTTAAGGTTAGATTATC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS GCA 72 bp | TGCCACCACTGTGGAAAGCTGCAGTGGGTCACACATTaGGAGAAGACTGTGGGCCCAGAGCCGTCTGCTAGG | + |
|
Preference number: 6 (lower is better) Translates to: CHHCGKLQWVTH*EKTVGPEPSAR Trigger: CCTAGCAGACGGCTCTGGGCCCACAGTCTTCTCGCAATGTGTGACCCACTGCAGCTTTCCACAGTGGTGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000094654.3 |
||
| CDS CAA 90 bp | AATCCAGGCCAGGCTGATCATAGACTGTTCAAGCTTGCTGTTGCTTaGTACAGCAAGGGGCTGAGTGATGGCCAGGGAGCGGTCCAGGCT | + |
|
Preference number: 6 (lower is better) Translates to: NPGQADHRLFKLAVA*YSKGLSDGQGAVQA Trigger: AGCCTGGACCGCTCCCTGGCCATCACTCAGCCCCTTGCTGTACAAAGCAACAGCAAGCTTGAACAGTCTATGATCAGCCTGGCCTGGATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031172.9 ENSMUST00000094654.3 ENSMUST00000113372.2 |
||
| CDS CCA 72 bp | GGAGCGGTCCAGGCTAATCACCACCATCATGAAAGCTaGGGCATACATAGAGAAGAGCTTCAGATAGCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: GAVQANHHHHES*GIHREELQIAE Trigger: CTCAGCTATCTGAAGCTCTTCTCTATGTATGCCCCAGCTTTCATGATGGTGGTGATTAGCCTGGACCGCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000031172.9 ENSMUST00000094654.3 ENSMUST00000113372.2 |
||
| CDS CCA 72 bp | GGTGAAAAAGTTGTAGAAGGCCTGATGCCACCACTGTaGAAAGCTGCAGTGGGTCACACATTGCGAGAAGAC | + |
|
Preference number: 6 (lower is better) Translates to: GEKVVEGLMPPL*KAAVGHTLRED Trigger: GTCTTCTCGCAATGTGTGACCCACTGCAGCTTTCCACAGTGGTGGCATCAGGCCTTCTACAACTTTTTCACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000031172.9 ENSMUST00000094654.3 |
||
| CDS TCA 72 bp | TGTATCAAGGGGATGCTGTTGTTGATGGCCGAGCAGTaGTTTGGGTCCTGCTCAAGAGATGCATTGTTAGCC | + |
|
Preference number: 6 (lower is better) Translates to: CIKGMLLLMAEQ*FGSCSRDALLA Trigger: GGCTAACAATGCATCTCTTGAGCAGGACCCAAATCACTGCTCGGCCATCAACAACAGCATCCCCTTGATACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031172.9 ENSMUST00000094654.3 ENSMUST00000113372.2 |
||
| CDS CAA 72 bp | CCATCCAGTGGCATGACGATCAGAGTCTCCAGCAGGTaGGCTAAGGTCAAATGCTTTAAAAGCACCTTCATC | + |
|
Preference number: 6 (lower is better) Translates to: PSSGMTIRVSSR*AKVKCFKSTFI Trigger: GATGAAGGTGCTTTTAAAGCATTTGACCTTAGCCAACCTGCTGGAGACTCTGATCGTCATGCCACTGGATGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000031172.9 ENSMUST00000094654.3 ENSMUST00000113372.2 |
||
| CDS CCA 72 bp | TTAGCGTTCTCAGCCGAGCTCTTGGGATATTATTCTTaGACTGATTCAGCTGTAGTTTGCGTGGGTCTTGAT | + |
|
Preference number: 6 (lower is better) Translates to: LAFSAELLGYYS*TDSAVVCVGLD Trigger: ATCAAGACCCACGCAAACTACAGCTGAATCAGTCCAAGAATAATATCCCAAGAGCTCGGCTGAGAACGCTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS CCA 72 bp | ACAGTGATTCTTAGATCTAAGGAATACCGTACTGCGTaGGTCTTGATGAAGGACTCGCGTGAGAGCAAAGAT | + |
|
Preference number: 6 (lower is better) Translates to: TVILRSKEYRTA*VLMKDSRESKD Trigger: ATCTTTGCTCTCACGCGAGTCCTTCATCAAGACCCACGCAGTACGGTATTCCTTAGATCTAAGAATCACTGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
||
| CDS CAA 90 bp | TCTACAGTGATTCTTAGATCTAAGGAATACCGTACTGCGTGGGTCTaGATGAAGGACTCGCGTGAGAGCAAAGATGATTTTGGCATTGCA | + |
|
Preference number: 6 (lower is better) Translates to: STVILRSKEYRTAWV*MKDSRESKDDFGIA Trigger: TGCAATGCCAAAATCATCTTTGCTCTCACGCGAGTCCTTCATCAAGACCCACGCAGTACGGTATTCCTTAGATCTAAGAATCACTGTAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
||
| CDS CAA 72 bp | ATGCGACTGTCATCTTTAGCGTTCTCAGCCGAGCTCTaGGGATATTATTCTTGGACTGATTCAGCTGTAGTT | + |
|
Preference number: 6 (lower is better) Translates to: MRLSSLAFSAEL*GYYSWTDSAVV Trigger: AACTACAGCTGAATCAGTCCAAGAATAATATCCCAAGAGCTCGGCTGAGAACGCTAAAGATGACAGTCGCAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000031172.9 |
||
| CDS CAA 72 bp | ATTCTTAGATCTAAGGAATACCGTACTGCGTGGGTCTaGATGAAGGACTCGCGTGAGAGCAAAGATGATTTT | + |
|
Preference number: 6 (lower is better) Translates to: ILRSKEYRTAWV*MKDSRESKDDF Trigger: AAAATCATCTTTGCTCTCACGCGAGTCCTTCATCAAGACCCACGCAGTACGGTATTCCTTAGATCTAAGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000094654.3 |
||