Pregenerated sensors for GNG8 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000063594Ensembl transcript IDs: ENSMUST00000078182.6, ENSMUST00000205459.2, ENSMUST00000205716.2
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR GCA 90 bp | CAGGCACCACCAGGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATACTTCCAGCTTCAGCTaGTCCACGGTCTTGCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: QAPPGHQVYWIHTSAGEDTSSFS*STVLRA Trigger: GGCCCGCAAGACCGTGGAGCAGCTGAAGCTGGAAGT...ATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACCTGGTGGTGCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | AGGCACCACCAGGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAGCTCGGCTGCTGCCTaGGACACCTTCATGCGATCG | + |
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Preference number: 4 (lower is better) Translates to: RHHQVTKFIGFILLRGRISSAAA*DTFMRS Trigger: CGATCGCATGAAGGTGTCGCAGGCAGCAGCCGAGCT...TATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACCTGGTGGTGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | GGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCTTGACTTCCAGCTTCAGCTaGTCCACGGTCTTGCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: GHQVYWIHTSAGEDKAVLTSSFS*STVLRA Trigger: GGCCCGCAAGACCGTGGAGCAGCTGAAGCTGGAAGT...CAAGACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | CACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCTTGAGGACTTCCAGCTTCAGCTaGTCCACGGTCTTGCGGGCC | + |
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Preference number: 4 (lower is better) Translates to: HQVYWIHTSAGEDKAVLRTSSFS*STVLRA Trigger: GGCCCGCAAGACCGTGGAGCAGCTGAAGCTGGAAGT...CCTCAAGACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | CACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCTTGAGGAGCTCGGCTGCTGCCTaGGACACCTTCATGCGATCG | + |
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Preference number: 4 (lower is better) Translates to: HQVYWIHTSAGEDKAVLRSSAAA*DTFMRS Trigger: CGATCGCATGAAGGTGTCGCAGGCAGCAGCCGAGCT...CCTCAAGACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | CACCAGGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGAGCCAAAAGCTCGGCTaGTGCCTGCGACACCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: HQVTKFIGFILLRGRIKLSQKLG*CLRHLH Trigger: ATGAAGGTGTCGCAGGCAGCAGCCGAGCTTTTGGCT...CAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACCTGGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | CAGGCACCACCAGGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATGGGTCATCCTTAGCGTaGGTTTCGCAGAAAGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: QAPPGHQVYWIHTSAGEDGSSLA*VSQKAK Trigger: TTTGGCTTTCTGCGAAACGCACGCTAAGGATGACCC...ATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACCTGGTGGTGCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000205716.2 |
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| CDS-3UTR CCA 90 bp | CCAGGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCGACAGGAGTCACCAGTaGGTCATCCTTAGCGTGCGT | + |
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Preference number: 4 (lower is better) Translates to: PGHQVYWIHTSAGEDKAVDRSHQ*VILSVR Trigger: ACGCACGCTAAGGATGACCCACTGGTGACTCCTGTC...GACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000078182.6 ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | AGGCACCACCAGGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATACCTGCGACACCTTCATaGGATCGATGTTCACTTCCA | + |
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Preference number: 4 (lower is better) Translates to: RHHQVTKFIGFILLRGRIPATPS*DRCSLP Trigger: TGGAAGTGAACATCGATCGCATGAAGGTGTCGCAGG...TATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACCTGGTGGTGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | GGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCTTGAGCCAAAAGCTCGGCTaGTGCCTGCGACACCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: GHQVYWIHTSAGEDKAVLSQKLG*CLRHLH Trigger: ATGAAGGTGTCGCAGGCAGCAGCCGAGCTTTTGGCT...CAAGACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | CACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCTTGAGGAGCCAAAAGCTCGGCTaGTGCCTGCGACACCTTCAT | + |
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Preference number: 4 (lower is better) Translates to: HQVYWIHTSAGEDKAVLRSQKLG*CLRHLH Trigger: ATGAAGGTGTCGCAGGCAGCAGCCGAGCTTTTGGCT...CCTCAAGACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS-3UTR CCA 90 bp | CACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCTTGAGGGACAGGAGTCACCAGTaGGTCATCCTTAGCGTGCGT | + |
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Preference number: 4 (lower is better) Translates to: HQVYWIHTSAGEDKAVLRDRSHQ*VILSVR Trigger: ACGCACGCTAAGGATGACCCACTGGTGACTCCTGTC...CCTCAAGACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | GGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCTTGCCTGCGACACCTTCATaGGATCGATGTTCACTTCCA | + |
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Preference number: 4 (lower is better) Translates to: GHQVYWIHTSAGEDKAVLPATPS*DRCSLP Trigger: TGGAAGTGAACATCGATCGCATGAAGGTGTCGCAGG...CAAGACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | GGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCTTGGGGTCATCCTTAGCGTaGGTTTCGCAGAAAGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: GHQVYWIHTSAGEDKAVLGSSLA*VSQKAK Trigger: TTTGGCTTTCTGCGAAACGCACGCTAAGGATGACCC...CAAGACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS-3UTR GCA 90 bp | CACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCTTGAGGGGGTCATCCTTAGCGTaGGTTTCGCAGAAAGCCAAA | + |
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Preference number: 4 (lower is better) Translates to: HQVYWIHTSAGEDKAVLRGSSLA*VSQKAK Trigger: TTTGGCTTTCTGCGAAACGCACGCTAAGGATGACCC...CCTCAAGACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS CCA 90 bp | CTTGTCGCGGAAGGGATTCTCGGCGGCAGGGACAGGAGTCACCAGTaGGTCATCCTTAGCGTGCGTTTCGCAGAAAGCCAAAAGCTCGGC | + |
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Preference number: 5 (lower is better) Translates to: LVAEGILGGRDRSHQ*VILSVRFAESQKLG Trigger: GCCGAGCTTTTGGCTTTCTGCGAAACGCACGCTAAGGATGACCCACTGGTGACTCCTGTCCCTGCCGCCGAGAATCCCTTCCGCGACAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS GCA 90 bp | GCCTGCGACACCTTCATGCGATCGATGTTCACTTCCAGCTTCAGCTaGTCCACGGTCTTGCGGGCCTCAGCAATCTTGGCCATGTTGTTG | + |
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Preference number: 5 (lower is better) Translates to: ACDTFMRSMFTSSFS*STVLRASAILAMLL Trigger: CAACAACATGGCCAAGATTGCTGAGGCCCGCAAGACCGTGGAGCAGCTGAAGCTGGAAGTGAACATCGATCGCATGAAGGTGTCGCAGGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS-3UTR CAA 90 bp | CACCACCAGGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGGTGCAAAAGAGTCGCTaGTCGCGGAAGGGATTCTCG | + |
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Preference number: 5 (lower is better) Translates to: HHQVTKFIGFILLRGRIKVQKSR*SRKGFS Trigger: CGAGAATCCCTTCCGCGACAAGCGACTCTTTTGCAC...CTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACCTGGTGGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000205716.2 |
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| CDS-3UTR CAA 90 bp | CAGGTCACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCTGTGCAAAAGAGTCGCTaGTCGCGGAAGGGATTCTCG | + |
|
Preference number: 5 (lower is better) Translates to: QVTKFIGFILLRGRIKLSVQKSR*SRKGFS Trigger: CGAGAATCCCTTCCGCGACAAGCGACTCTTTTGCAC...AGACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTGACCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000078182.6 ENSMUST00000205716.2 |
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| CDS-3UTR CAA 90 bp | CACCAAGTTTATTGGATTCATACTTCTGCGGGGGAGGATAAAGCTGTCTTGAGGGTGCAAAAGAGTCGCTaGTCGCGGAAGGGATTCTCG | + |
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Preference number: 5 (lower is better) Translates to: HQVYWIHTSAGEDKAVLRVQKSR*SRKGFS Trigger: CGAGAATCCCTTCCGCGACAAGCGACTCTTTTGCAC...CCTCAAGACAGCTTTATCCTCCCCCGCAGAAGTATGAATCCAATAAACTTGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS GCA 72 bp | GCAGGGACAGGAGTCACCAGTGGGTCATCCTTAGCGTaGGTTTCGCAGAAAGCCAAAAGCTCGGCTGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: AGTGVTSGSSLA*VSQKAKSSAAA Trigger: GGCAGCAGCCGAGCTTTTGGCTTTCTGCGAAACGCACGCTAAGGATGACCCACTGGTGACTCCTGTCCCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS GCA 72 bp | ACCTTCATGCGATCGATGTTCACTTCCAGCTTCAGCTaGTCCACGGTCTTGCGGGCCTCAGCAATCTTGGCC | + |
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Preference number: 6 (lower is better) Translates to: TFMRSMFTSSFS*STVLRASAILA Trigger: GGCCAAGATTGCTGAGGCCCGCAAGACCGTGGAGCAGCTGAAGCTGGAAGTGAACATCGATCGCATGAAGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS GCA 72 bp | CTTAGCGTGCGTTTCGCAGAAAGCCAAAAGCTCGGCTaGTGCCTGCGACACCTTCATGCGATCGATGTTCAC | + |
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Preference number: 6 (lower is better) Translates to: LSVRFAESQKLG*CLRHLHAIDVH Trigger: GTGAACATCGATCGCATGAAGGTGTCGCAGGCAGCAGCCGAGCTTTTGGCTTTCTGCGAAACGCACGCTAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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| CDS CAA 72 bp | TCGATGTTCACTTCCAGCTTCAGCTGCTCCACGGTCTaGCGGGCCTCAGCAATCTTGGCCATGTTGTTGGAC | + |
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Preference number: 6 (lower is better) Translates to: SMFTSSFSCSTV*RASAILAMLLD Trigger: GTCCAACAACATGGCCAAGATTGCTGAGGCCCGCAAGACCGTGGAGCAGCTGAAGCTGGAAGTGAACATCGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000078182.6 ENSMUST00000205459.2 ENSMUST00000205716.2 |
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