RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GNG5 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000068523

Ensembl transcript IDs: ENSMUST00000090031.12, ENSMUST00000118280.2, ENSMUST00000119130.2

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCAAACAGTCATGCTGCTTGTGCCAGCACTCCACAAACACATGGCTaGTGGTGGCAGTGGACTCTTGAGTCTCCCGTGCTTCTAGTTACA +
Preference number: 1 (lower is better)
Translates to: PNSHAACASTPQTHG*WWQWTLESPVLLVT
Trigger: TGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGCATGACTGTTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR CCA 90 bp AACAGTCATGCTGCTTGTGCCAGCACTCCACAAACACATGGCTGCTaGTGGCAGTGGACTCTTGAGTCTCCCGTGCTTCTAGTTACAGTT +
Preference number: 1 (lower is better)
Translates to: NSHAACASTPQTHGC*WQWTLESPVLLVTV
Trigger: AACTGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGCATGACTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR CCA 90 bp GCTGCTTGTGCCAGCACTCCACAAACACATGGCTGCTGGTGGCAGTaGACTCTTGAGTCTCCCGTGCTTCTAGTTACAGTTATTACATCT +
Preference number: 1 (lower is better)
Translates to: AACASTPQTHGCWWQ*TLESPVLLVTVITS
Trigger: AGATGTAATAACTGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR CCA 90 bp AGTCATGCTGCTTGTGCCAGCACTCCACAAACACATGGCTGCTGGTaGCAGTGGACTCTTGAGTCTCCCGTGCTTCTAGTTACAGTTATT +
Preference number: 1 (lower is better)
Translates to: SHAACASTPQTHGCW*QWTLESPVLLVTVI
Trigger: AATAACTGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGCATGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR CCA 90 bp TCCCTGCCAACACAAATGGAAATCTCTCTCAATGAAAAACGGAGGTaGGGTTCCTGCGCTGTGTGTGCCTACTCAGGTACCCCAACATTG +
Preference number: 1 (lower is better)
Translates to: SLPTQMEISLNEKRR*GSCAVCAYSGTPTL
Trigger: CAATGTTGGGGTACCTGAGTAGGCACACACAGCGCAGGAACCCCACCTCCGTTTTTCATTGAGAGAGATTTCCATTTGTGTTGGCAGGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR TCA 90 bp CTAGCTCTCTGCTGTGCTACTCACACCTTGGGTCTCTTACACCAGTaGCAACAGTTTATCCACAAATCCACCAGGATACCTGTAGAGCCA +
Preference number: 1 (lower is better)
Translates to: LALCCATHTLGLLHQ*QQFIHKSTRIPVEP
Trigger: TGGCTCTACAGGTATCCTGGTGGATTTGTGGATAAACTGTTGTCACTGGTGTAAGAGACCCAAGGTGTGAGTAGCACAGCAGAGAGCTAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR GCA 90 bp GAGTTGGTGTGCTACAACACACAAGGTGTGATCAGTTTAGGGGTATaGTATACTTTCAGTCATGATGAGTTTGTTGGTATCCACCCCACC +
Preference number: 1 (lower is better)
Translates to: ELVCYNTQGVISLGV*YTFSHDEFVGIHPT
Trigger: GGTGGGGTGGATACCAACAAACTCATCATGACTGAAAGTATAGCATACCCCTAAACTGATCACACCTTGTGTGTTGTAGCACACCAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR GCA 90 bp GATACTGAGTATACTGTCAGCAGCATAAAAATGAAACCACCTGACTaGAGCCCATTAGAGGAATGGATAAAGGAAGGTCTACACATACAA +
Preference number: 1 (lower is better)
Translates to: DTEYTVSSIKMKPPD*SPLEEWIKEGLHIQ
Trigger: TTGTATGTGTAGACCTTCCTTTATCCATTCCTCTAATGGGCTGCAGTCAGGTGGTTTCATTTTTATGCTGCTGACAGTATACTCAGTATC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR CAA 90 bp AGGTGGGGTTCCTGCGCTGTGTGTGCCTACTCAGGTACCCCAACATaGCTTTCCCTAGCTCTCTGCTGTGCTACTCACACCTTGGGTCTC +
Preference number: 2 (lower is better)
Translates to: RWGSCAVCAYSGTPT*LSLALCCATHTLGL
Trigger: GAGACCCAAGGTGTGAGTAGCACAGCAGAGAGCTAGGGAAAGCAATGTTGGGGTACCTGAGTAGGCACACACAGCGCAGGAACCCCACCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR CCA 90 bp ACCCCAACATTGCTTTCCCTAGCTCTCTGCTGTGCTACTCACACCTTGGGTCTCCACTCCACAAACACATaGCTGCTGGTGGCAGTGGAC +
Preference number: 2 (lower is better)
Translates to: TPTLLSLALCCATHTLGLHSTNT*LLVAVD
Trigger: GTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTG...GAGACCCAAGGTGTGAGTAGCACAGCAGAGAGCTAGGGAAAGCAATGTTGGGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR GCA 90 bp GGAAGCAGCTTCCTGGACTTCACAAGTCAGAATGTTAGTATAAGGGTGTGCACCTTCCTGCGCTGTGTGTaGCTACTCAGGTACCCCAAC +
Preference number: 2 (lower is better)
Translates to: GSSFLDFTSQNVSIRVCTFLRCV*LLRYPN
Trigger: GTTGGGGTACCTGAGTAGGCACACACAGCGCAGGAA...GGTGCACACCCTTATACTAACATTCTGACTTGTGAAGTCCAGGAAGCTGCTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR TCA 90 bp GATACTGAGTATACTGTCAGCAGCATAAAAATGAAACCACCTGACTGCAGCCCACTAAGTGTCTTCCTTTaGATCAAAGGGGGCGGTGTG +
Preference number: 2 (lower is better)
Translates to: DTEYTVSSIKMKPPDCSPLSVFL*IKGGGV
Trigger: CACACCGCCCCCTTTGATTCAAAGGAAGACACTTAG...TGGGCTGCAGTCAGGTGGTTTCATTTTTATGCTGCTGACAGTATACTCAGTATC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR GCA 90 bp GGAAGCAGCTTCCTGGACTTCACAAGTCAGAATGTTAGTATAAGGGTGTGCACCTCAGCTCCAGTTCCCTaGCAACACAAATGGAAATCT +
Preference number: 2 (lower is better)
Translates to: GSSFLDFTSQNVSIRVCTSAPVP*QHKWKS
Trigger: AGATTTCCATTTGTGTTGGCAGGGAACTGGAGCTGA...GGTGCACACCCTTATACTAACATTCTGACTTGTGAAGTCCAGGAAGCTGCTTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR GCA 90 bp GATACTGAGTATACTGTCAGCAGCATAAAAATGAAACCACCTGACTGCAGCCCAAGCCCTATTAGAGAGTaGAGATCCTCAGCTCCAGTT +
Preference number: 2 (lower is better)
Translates to: DTEYTVSSIKMKPPDCSPSPIRE*RSSAPV
Trigger: AACTGGAGCTGAGGATCTGCACTCTCTAATAGGGCT...TGGGCTGCAGTCAGGTGGTTTCATTTTTATGCTGCTGACAGTATACTCAGTATC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR CCA 90 bp AAAATGAAACCACCTGACTGCAGCCCATTAGAGGAATGGATAAAGGAAGGTCTAAATGAAAAACGGAGGTaGGGTTCCTGCGCTGTGTGT +
Preference number: 2 (lower is better)
Translates to: KMKPPDCSPLEEWIKEGLNEKRR*GSCAVC
Trigger: ACACACAGCGCAGGAACCCCACCTCCGTTTTTCATT...TAGACCTTCCTTTATCCATTCCTCTAATGGGCTGCAGTCAGGTGGTTTCATTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR GCA 90 bp GTTATGGAAATGAGTGTGACCTGTTTTATAAAAGAAGGTGTACAAAGGGTGAAGCAGTCATGCTGCTTGTaGCAGCACTCCACAAACACA +
Preference number: 2 (lower is better)
Translates to: VMEMSVTCFIKEGVQRVKQSCCL*QHSTNT
Trigger: TGTGTTTGTGGAGTGCTGGCACAAGCAGCATGACTG...CTTCACCCTTTGTACACCTTCTTTTATAAAACAGGTCACACTCATTTCCATAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR CCA 90 bp CTAAGCCTGTTTATCTGTTTACCATCACCAAGTACTAGAGTAAGAAAGAATACAACACATGGCTGCTGGTaGCAGTGGACTCTTGAGTCT +
Preference number: 2 (lower is better)
Translates to: LSLFICLPSPSTRVRKNTTHGCW*QWTLES
Trigger: AGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGT...TGTATTCTTTCTTACTCTAGTACTTGGTGATGGTAAACAGATAAACAGGCTTAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR GCA 90 bp GTTATGGAAATGAGTGTGACCTGTTTTATAAAAGAAGGTGTACAAAGGGTGAAGACAAGGAATTTGGAATaGCAGTCAGGACCACAGGGA +
Preference number: 2 (lower is better)
Translates to: VMEMSVTCFIKEGVQRVKTRNLE*QSGPQG
Trigger: TCCCTGTGGTCCTGACTGGCATTCCAAATTCCTTGT...CTTCACCCTTTGTACACCTTCTTTTATAAAACAGGTCACACTCATTTCCATAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR CCA 90 bp GTTATGGAAATGAGTGTGACCTGTTTTATAAAAGAAGGTGTACAAAGGGTGAAGCAAAAACAAGGAATTTaGAATGCCAGTCAGGACCAC +
Preference number: 2 (lower is better)
Translates to: VMEMSVTCFIKEGVQRVKQKQGI*NASQDH
Trigger: GTGGTCCTGACTGGCATTCCAAATTCCTTGTTTTTG...CTTCACCCTTTGTACACCTTCTTTTATAAAACAGGTCACACTCATTTCCATAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR GCA 72 bp CATGCTGCTTGTGCCAGCACTCCACAAACACATGGCTaGTGGTGGCAGTGGACTCTTGAGTCTCCCGTGCTT +
Preference number: 3 (lower is better)
Translates to: HAACASTPQTHG*WWQWTLESPVL
Trigger: AAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR CCA 72 bp GCTGCTTGTGCCAGCACTCCACAAACACATGGCTGCTaGTGGCAGTGGACTCTTGAGTCTCCCGTGCTTCTA +
Preference number: 3 (lower is better)
Translates to: AACASTPQTHGC*WQWTLESPVLL
Trigger: TAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR CCA 72 bp GCTTGTGCCAGCACTCCACAAACACATGGCTGCTGGTaGCAGTGGACTCTTGAGTCTCCCGTGCTTCTAGTT +
Preference number: 3 (lower is better)
Translates to: ACASTPQTHGCW*QWTLESPVLLV
Trigger: AACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR CCA 72 bp GCCAGCACTCCACAAACACATGGCTGCTGGTGGCAGTaGACTCTTGAGTCTCCCGTGCTTCTAGTTACAGTT +
Preference number: 3 (lower is better)
Translates to: ASTPQTHGCWWQ*TLESPVLLVTV
Trigger: AACTGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR TCA 72 bp CAGTTCCCTGCCAACACAAATGGAAATCTCTCTCAATaGAAAACGGAGGTGGGGTTCCTGCGCTGTGTGTGC +
Preference number: 3 (lower is better)
Translates to: QFPANTNGNLSQ*KTEVGFLRCVC
Trigger: GCACACACAGCGCAGGAACCCCACCTCCGTTTTTCATTGAGAGAGATTTCCATTTGTGTTGGCAGGGAACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR GCA 72 bp TACTCAGGTACCCCAACATTGCTTTCCCTAGCTCTCTaGTGTGCTACTCACACCTTGGGTCTCTTACACCAG +
Preference number: 3 (lower is better)
Translates to: YSGTPTLLSLAL*CATHTLGLLHQ
Trigger: CTGGTGTAAGAGACCCAAGGTGTGAGTAGCACAGCAGAGAGCTAGGGAAAGCAATGTTGGGGTACCTGAGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR GCA 72 bp AAGCATTTTAGGATCTCCAAACAGTCATGCTGCTTGTaGCAGCACTCCACAAACACATGGCTGCTGGTGGCA +
Preference number: 3 (lower is better)
Translates to: KHFRISKQSCCL*QHSTNTWLLVA
Trigger: TGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGCATGACTGTTTGGAGATCCTAAAATGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR TCA 72 bp TCCACAAACACATGGCTGCTGGTGGCAGTGGACTCTTaGGTCTCCCGTGCTTCTAGTTACAGTTATTACATC +
Preference number: 3 (lower is better)
Translates to: STNTWLLVAVDS*VSRASSYSYYI
Trigger: GATGTAATAACTGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR TCA 72 bp CCCACCATGAATCAACCCCTCTCTAGGTGGCTCACATaGATGTTGGCTTATAAAGGGTTAAGCCTAAGCCTG +
Preference number: 3 (lower is better)
Translates to: PTMNQPLSRWLT*MLAYKGLSLSL
Trigger: CAGGCTTAGGCTTAACCCTTTATAAGCCAACATTCATGTGAGCCACCTAGAGAGGGGTTGATTCATGGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR TCA 72 bp TGCTGTGCTACTCACACCTTGGGTCTCTTACACCAGTaGCAACAGTTTATCCACAAATCCACCAGGATACCT +
Preference number: 3 (lower is better)
Translates to: CCATHTLGLLHQ*QQFIHKSTRIP
Trigger: AGGTATCCTGGTGGATTTGTGGATAAACTGTTGTCACTGGTGTAAGAGACCCAAGGTGTGAGTAGCACAGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR GCA 72 bp GACATGAATATACACTCTGATAGCCCTATTAGAGAGTaGAGATCCTCAGCTCCAGTTCCCTGCCAACACAAA +
Preference number: 3 (lower is better)
Translates to: DMNIHSDSPIRE*RSSAPVPCQHK
Trigger: TTTGTGTTGGCAGGGAACTGGAGCTGAGGATCTGCACTCTCTAATAGGGCTATCAGAGTGTATATTCATGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR CCA 72 bp AACCTAGTTTTCAGTAGCCTTCAAAAACAAGGAATTTaGAATGCCAGTCAGGACCACAGGGACAGACACTGT +
Preference number: 3 (lower is better)
Translates to: NLVFSSLQKQGI*NASQDHRDRHC
Trigger: ACAGTGTCTGTCCCTGTGGTCCTGACTGGCATTCCAAATTCCTTGTTTTTGAAGGCTACTGAAAACTAGGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR CAA 90 bp AAAATGAAACCACCTGACTGCAGCCCATTAGAGGAATGGATAAAGGAAGGTCTATCAAAAACAAGGAATTaGGAATGCCAGTCAGGACCA +
Preference number: 3 (lower is better)
Translates to: KMKPPDCSPLEEWIKEGLSKTRN*ECQSGP
Trigger: TGGTCCTGACTGGCATTCCAAATTCCTTGTTTTTGA...TAGACCTTCCTTTATCCATTCCTCTAATGGGCTGCAGTCAGGTGGTTTCATTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR GCA 72 bp TATACTGTCAGCAGCATAAAAATGAAACCACCTGACTaGAGCCCATTAGAGGAATGGATAAAGGAAGGTCTA +
Preference number: 3 (lower is better)
Translates to: YTVSSIKMKPPD*SPLEEWIKEGL
Trigger: TAGACCTTCCTTTATCCATTCCTCTAATGGGCTGCAGTCAGGTGGTTTCATTTTTATGCTGCTGACAGTATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR CAA 90 bp CTAAGCCTGTTTATCTGTTTACCATCACCAAGTACTAGAGTAAGAAAGAATACACCTAAGTGTCTTCCTTaGAATCAAAGGGGGCGGTGT +
Preference number: 3 (lower is better)
Translates to: LSLFICLPSPSTRVRKNTPKCLP*NQRGRC
Trigger: ACACCGCCCCCTTTGATTCAAAGGAAGACACTTAGG...TGTATTCTTTCTTACTCTAGTACTTGGTGATGGTAAACAGATAAACAGGCTTAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR-3UTR CAA 90 bp GTTATGGAAATGAGTGTGACCTGTTTTATAAAAGAAGGTGTACAAAGGGTGAAGTTGTATGATGCTTTATaGTATGCTACAGCCAGTGTA +
Preference number: 3 (lower is better)
Translates to: VMEMSVTCFIKEGVQRVKLYDAL*YATASV
Trigger: TACACTGGCTGTAGCATACAATAAAGCATCATACAA...CTTCACCCTTTGTACACCTTCTTTTATAAAACAGGTCACACTCATTTCCATAAC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
3UTR GCA 72 bp AATAATACATTATTATACTTTGAATCTGAGTTGGTGTaGTACAACACACAAGGTGTGATCAGTTTAGGGGTA +
Preference number: 3 (lower is better)
Translates to: NNTLLYFESELV*YNTQGVISLGV
Trigger: TACCCCTAAACTGATCACACCTTGTGTGTTGTAGCACACCAACTCAGATTCAAAGTATAATAATGTATTATT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
CDS-3UTR CCA 90 bp ACCCCAACATTGCTTTCCCTAGCTCTCTGCTGTGCTACTCACACCTTGGGTCTCTCCAGCCGGAGCTGCTaGACCACCTTCTTCATGGCG +
Preference number: 4 (lower is better)
Translates to: TPTLLSLALCCATHTLGLSSRSC*TTFFMA
Trigger: CGCCATGAAGAAGGTGGTCCAGCAGCTCCGGCTGGA...GAGACCCAAGGTGTGAGTAGCACAGCAGAGAGCTAGGGAAAGCAATGTTGGGGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000118280.2
CDS-3UTR CCA 90 bp GTAAGGAGGCCAAAGGTTTGTATGATGCTTTATTGTATGCTACAGCCAGTGTATTCCAGCCGGAGCTGCTaGACCACCTTCTTCATGGCG +
Preference number: 4 (lower is better)
Translates to: VRRPKVCMMLYCMLQPVYSSRSC*TTFFMA
Trigger: CGCCATGAAGAAGGTGGTCCAGCAGCTCCGGCTGGA...ATACACTGGCTGTAGCATACAATAAAGCATCATACAAACCTTTGGCCTCCTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000090031.12
CDS CCA 72 bp GTCTGCAGCTGCCTGGGAAACCTCTTTGTTCGAGGCTaGACCCCCACAAAGGTGGAGTCCGGAGACTCCCGG +
Preference number: 6 (lower is better)
Translates to: VCSCLGNLFVRG*TPTKVESGDSR
Trigger: CCGGGAGTCTCCGGACTCCACCTTTGTGGGGGTCCAGCCTCGAACAAAGAGGTTTCCCAGGCAGCTGCAGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000119130.2