Pregenerated sensors for GNG5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000068523Ensembl transcript IDs: ENSMUST00000090031.12, ENSMUST00000118280.2, ENSMUST00000119130.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
Type | Sensor | Details |
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3UTR GCA 90 bp | CCAAACAGTCATGCTGCTTGTGCCAGCACTCCACAAACACATGGCTaGTGGTGGCAGTGGACTCTTGAGTCTCCCGTGCTTCTAGTTACA | + |
Preference number: 1 (lower is better) Translates to: PNSHAACASTPQTHG*WWQWTLESPVLLVT Trigger: TGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGCATGACTGTTTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR CCA 90 bp | AACAGTCATGCTGCTTGTGCCAGCACTCCACAAACACATGGCTGCTaGTGGCAGTGGACTCTTGAGTCTCCCGTGCTTCTAGTTACAGTT | + |
Preference number: 1 (lower is better) Translates to: NSHAACASTPQTHGC*WQWTLESPVLLVTV Trigger: AACTGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGCATGACTGTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR CCA 90 bp | GCTGCTTGTGCCAGCACTCCACAAACACATGGCTGCTGGTGGCAGTaGACTCTTGAGTCTCCCGTGCTTCTAGTTACAGTTATTACATCT | + |
Preference number: 1 (lower is better) Translates to: AACASTPQTHGCWWQ*TLESPVLLVTVITS Trigger: AGATGTAATAACTGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR CCA 90 bp | AGTCATGCTGCTTGTGCCAGCACTCCACAAACACATGGCTGCTGGTaGCAGTGGACTCTTGAGTCTCCCGTGCTTCTAGTTACAGTTATT | + |
Preference number: 1 (lower is better) Translates to: SHAACASTPQTHGCW*QWTLESPVLLVTVI Trigger: AATAACTGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGCATGACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR CCA 90 bp | TCCCTGCCAACACAAATGGAAATCTCTCTCAATGAAAAACGGAGGTaGGGTTCCTGCGCTGTGTGTGCCTACTCAGGTACCCCAACATTG | + |
Preference number: 1 (lower is better) Translates to: SLPTQMEISLNEKRR*GSCAVCAYSGTPTL Trigger: CAATGTTGGGGTACCTGAGTAGGCACACACAGCGCAGGAACCCCACCTCCGTTTTTCATTGAGAGAGATTTCCATTTGTGTTGGCAGGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR TCA 90 bp | CTAGCTCTCTGCTGTGCTACTCACACCTTGGGTCTCTTACACCAGTaGCAACAGTTTATCCACAAATCCACCAGGATACCTGTAGAGCCA | + |
Preference number: 1 (lower is better) Translates to: LALCCATHTLGLLHQ*QQFIHKSTRIPVEP Trigger: TGGCTCTACAGGTATCCTGGTGGATTTGTGGATAAACTGTTGTCACTGGTGTAAGAGACCCAAGGTGTGAGTAGCACAGCAGAGAGCTAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR GCA 90 bp | GAGTTGGTGTGCTACAACACACAAGGTGTGATCAGTTTAGGGGTATaGTATACTTTCAGTCATGATGAGTTTGTTGGTATCCACCCCACC | + |
Preference number: 1 (lower is better) Translates to: ELVCYNTQGVISLGV*YTFSHDEFVGIHPT Trigger: GGTGGGGTGGATACCAACAAACTCATCATGACTGAAAGTATAGCATACCCCTAAACTGATCACACCTTGTGTGTTGTAGCACACCAACTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR GCA 90 bp | GATACTGAGTATACTGTCAGCAGCATAAAAATGAAACCACCTGACTaGAGCCCATTAGAGGAATGGATAAAGGAAGGTCTACACATACAA | + |
Preference number: 1 (lower is better) Translates to: DTEYTVSSIKMKPPD*SPLEEWIKEGLHIQ Trigger: TTGTATGTGTAGACCTTCCTTTATCCATTCCTCTAATGGGCTGCAGTCAGGTGGTTTCATTTTTATGCTGCTGACAGTATACTCAGTATC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR CAA 90 bp | AGGTGGGGTTCCTGCGCTGTGTGTGCCTACTCAGGTACCCCAACATaGCTTTCCCTAGCTCTCTGCTGTGCTACTCACACCTTGGGTCTC | + |
Preference number: 2 (lower is better) Translates to: RWGSCAVCAYSGTPT*LSLALCCATHTLGL Trigger: GAGACCCAAGGTGTGAGTAGCACAGCAGAGAGCTAGGGAAAGCAATGTTGGGGTACCTGAGTAGGCACACACAGCGCAGGAACCCCACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR CCA 90 bp | ACCCCAACATTGCTTTCCCTAGCTCTCTGCTGTGCTACTCACACCTTGGGTCTCCACTCCACAAACACATaGCTGCTGGTGGCAGTGGAC | + |
Preference number: 2 (lower is better) Translates to: TPTLLSLALCCATHTLGLHSTNT*LLVAVD Trigger: GTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTG...GAGACCCAAGGTGTGAGTAGCACAGCAGAGAGCTAGGGAAAGCAATGTTGGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR GCA 90 bp | GGAAGCAGCTTCCTGGACTTCACAAGTCAGAATGTTAGTATAAGGGTGTGCACCTTCCTGCGCTGTGTGTaGCTACTCAGGTACCCCAAC | + |
Preference number: 2 (lower is better) Translates to: GSSFLDFTSQNVSIRVCTFLRCV*LLRYPN Trigger: GTTGGGGTACCTGAGTAGGCACACACAGCGCAGGAA...GGTGCACACCCTTATACTAACATTCTGACTTGTGAAGTCCAGGAAGCTGCTTCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR TCA 90 bp | GATACTGAGTATACTGTCAGCAGCATAAAAATGAAACCACCTGACTGCAGCCCACTAAGTGTCTTCCTTTaGATCAAAGGGGGCGGTGTG | + |
Preference number: 2 (lower is better) Translates to: DTEYTVSSIKMKPPDCSPLSVFL*IKGGGV Trigger: CACACCGCCCCCTTTGATTCAAAGGAAGACACTTAG...TGGGCTGCAGTCAGGTGGTTTCATTTTTATGCTGCTGACAGTATACTCAGTATC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR GCA 90 bp | GGAAGCAGCTTCCTGGACTTCACAAGTCAGAATGTTAGTATAAGGGTGTGCACCTCAGCTCCAGTTCCCTaGCAACACAAATGGAAATCT | + |
Preference number: 2 (lower is better) Translates to: GSSFLDFTSQNVSIRVCTSAPVP*QHKWKS Trigger: AGATTTCCATTTGTGTTGGCAGGGAACTGGAGCTGA...GGTGCACACCCTTATACTAACATTCTGACTTGTGAAGTCCAGGAAGCTGCTTCC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR GCA 90 bp | GATACTGAGTATACTGTCAGCAGCATAAAAATGAAACCACCTGACTGCAGCCCAAGCCCTATTAGAGAGTaGAGATCCTCAGCTCCAGTT | + |
Preference number: 2 (lower is better) Translates to: DTEYTVSSIKMKPPDCSPSPIRE*RSSAPV Trigger: AACTGGAGCTGAGGATCTGCACTCTCTAATAGGGCT...TGGGCTGCAGTCAGGTGGTTTCATTTTTATGCTGCTGACAGTATACTCAGTATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR CCA 90 bp | AAAATGAAACCACCTGACTGCAGCCCATTAGAGGAATGGATAAAGGAAGGTCTAAATGAAAAACGGAGGTaGGGTTCCTGCGCTGTGTGT | + |
Preference number: 2 (lower is better) Translates to: KMKPPDCSPLEEWIKEGLNEKRR*GSCAVC Trigger: ACACACAGCGCAGGAACCCCACCTCCGTTTTTCATT...TAGACCTTCCTTTATCCATTCCTCTAATGGGCTGCAGTCAGGTGGTTTCATTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR GCA 90 bp | GTTATGGAAATGAGTGTGACCTGTTTTATAAAAGAAGGTGTACAAAGGGTGAAGCAGTCATGCTGCTTGTaGCAGCACTCCACAAACACA | + |
Preference number: 2 (lower is better) Translates to: VMEMSVTCFIKEGVQRVKQSCCL*QHSTNT Trigger: TGTGTTTGTGGAGTGCTGGCACAAGCAGCATGACTG...CTTCACCCTTTGTACACCTTCTTTTATAAAACAGGTCACACTCATTTCCATAAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR CCA 90 bp | CTAAGCCTGTTTATCTGTTTACCATCACCAAGTACTAGAGTAAGAAAGAATACAACACATGGCTGCTGGTaGCAGTGGACTCTTGAGTCT | + |
Preference number: 2 (lower is better) Translates to: LSLFICLPSPSTRVRKNTTHGCW*QWTLES Trigger: AGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGT...TGTATTCTTTCTTACTCTAGTACTTGGTGATGGTAAACAGATAAACAGGCTTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR GCA 90 bp | GTTATGGAAATGAGTGTGACCTGTTTTATAAAAGAAGGTGTACAAAGGGTGAAGACAAGGAATTTGGAATaGCAGTCAGGACCACAGGGA | + |
Preference number: 2 (lower is better) Translates to: VMEMSVTCFIKEGVQRVKTRNLE*QSGPQG Trigger: TCCCTGTGGTCCTGACTGGCATTCCAAATTCCTTGT...CTTCACCCTTTGTACACCTTCTTTTATAAAACAGGTCACACTCATTTCCATAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR CCA 90 bp | GTTATGGAAATGAGTGTGACCTGTTTTATAAAAGAAGGTGTACAAAGGGTGAAGCAAAAACAAGGAATTTaGAATGCCAGTCAGGACCAC | + |
Preference number: 2 (lower is better) Translates to: VMEMSVTCFIKEGVQRVKQKQGI*NASQDH Trigger: GTGGTCCTGACTGGCATTCCAAATTCCTTGTTTTTG...CTTCACCCTTTGTACACCTTCTTTTATAAAACAGGTCACACTCATTTCCATAAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR GCA 72 bp | CATGCTGCTTGTGCCAGCACTCCACAAACACATGGCTaGTGGTGGCAGTGGACTCTTGAGTCTCCCGTGCTT | + |
Preference number: 3 (lower is better) Translates to: HAACASTPQTHG*WWQWTLESPVL Trigger: AAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGCATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR CCA 72 bp | GCTGCTTGTGCCAGCACTCCACAAACACATGGCTGCTaGTGGCAGTGGACTCTTGAGTCTCCCGTGCTTCTA | + |
Preference number: 3 (lower is better) Translates to: AACASTPQTHGC*WQWTLESPVLL Trigger: TAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR CCA 72 bp | GCTTGTGCCAGCACTCCACAAACACATGGCTGCTGGTaGCAGTGGACTCTTGAGTCTCCCGTGCTTCTAGTT | + |
Preference number: 3 (lower is better) Translates to: ACASTPQTHGCW*QWTLESPVLLV Trigger: AACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR CCA 72 bp | GCCAGCACTCCACAAACACATGGCTGCTGGTGGCAGTaGACTCTTGAGTCTCCCGTGCTTCTAGTTACAGTT | + |
Preference number: 3 (lower is better) Translates to: ASTPQTHGCWWQ*TLESPVLLVTV Trigger: AACTGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR TCA 72 bp | CAGTTCCCTGCCAACACAAATGGAAATCTCTCTCAATaGAAAACGGAGGTGGGGTTCCTGCGCTGTGTGTGC | + |
Preference number: 3 (lower is better) Translates to: QFPANTNGNLSQ*KTEVGFLRCVC Trigger: GCACACACAGCGCAGGAACCCCACCTCCGTTTTTCATTGAGAGAGATTTCCATTTGTGTTGGCAGGGAACTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR GCA 72 bp | TACTCAGGTACCCCAACATTGCTTTCCCTAGCTCTCTaGTGTGCTACTCACACCTTGGGTCTCTTACACCAG | + |
Preference number: 3 (lower is better) Translates to: YSGTPTLLSLAL*CATHTLGLLHQ Trigger: CTGGTGTAAGAGACCCAAGGTGTGAGTAGCACAGCAGAGAGCTAGGGAAAGCAATGTTGGGGTACCTGAGTA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR GCA 72 bp | AAGCATTTTAGGATCTCCAAACAGTCATGCTGCTTGTaGCAGCACTCCACAAACACATGGCTGCTGGTGGCA | + |
Preference number: 3 (lower is better) Translates to: KHFRISKQSCCL*QHSTNTWLLVA Trigger: TGCCACCAGCAGCCATGTGTTTGTGGAGTGCTGGCACAAGCAGCATGACTGTTTGGAGATCCTAAAATGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR TCA 72 bp | TCCACAAACACATGGCTGCTGGTGGCAGTGGACTCTTaGGTCTCCCGTGCTTCTAGTTACAGTTATTACATC | + |
Preference number: 3 (lower is better) Translates to: STNTWLLVAVDS*VSRASSYSYYI Trigger: GATGTAATAACTGTAACTAGAAGCACGGGAGACTCAAGAGTCCACTGCCACCAGCAGCCATGTGTTTGTGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR TCA 72 bp | CCCACCATGAATCAACCCCTCTCTAGGTGGCTCACATaGATGTTGGCTTATAAAGGGTTAAGCCTAAGCCTG | + |
Preference number: 3 (lower is better) Translates to: PTMNQPLSRWLT*MLAYKGLSLSL Trigger: CAGGCTTAGGCTTAACCCTTTATAAGCCAACATTCATGTGAGCCACCTAGAGAGGGGTTGATTCATGGTGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR TCA 72 bp | TGCTGTGCTACTCACACCTTGGGTCTCTTACACCAGTaGCAACAGTTTATCCACAAATCCACCAGGATACCT | + |
Preference number: 3 (lower is better) Translates to: CCATHTLGLLHQ*QQFIHKSTRIP Trigger: AGGTATCCTGGTGGATTTGTGGATAAACTGTTGTCACTGGTGTAAGAGACCCAAGGTGTGAGTAGCACAGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR GCA 72 bp | GACATGAATATACACTCTGATAGCCCTATTAGAGAGTaGAGATCCTCAGCTCCAGTTCCCTGCCAACACAAA | + |
Preference number: 3 (lower is better) Translates to: DMNIHSDSPIRE*RSSAPVPCQHK Trigger: TTTGTGTTGGCAGGGAACTGGAGCTGAGGATCTGCACTCTCTAATAGGGCTATCAGAGTGTATATTCATGTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR CCA 72 bp | AACCTAGTTTTCAGTAGCCTTCAAAAACAAGGAATTTaGAATGCCAGTCAGGACCACAGGGACAGACACTGT | + |
Preference number: 3 (lower is better) Translates to: NLVFSSLQKQGI*NASQDHRDRHC Trigger: ACAGTGTCTGTCCCTGTGGTCCTGACTGGCATTCCAAATTCCTTGTTTTTGAAGGCTACTGAAAACTAGGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR CAA 90 bp | AAAATGAAACCACCTGACTGCAGCCCATTAGAGGAATGGATAAAGGAAGGTCTATCAAAAACAAGGAATTaGGAATGCCAGTCAGGACCA | + |
Preference number: 3 (lower is better) Translates to: KMKPPDCSPLEEWIKEGLSKTRN*ECQSGP Trigger: TGGTCCTGACTGGCATTCCAAATTCCTTGTTTTTGA...TAGACCTTCCTTTATCCATTCCTCTAATGGGCTGCAGTCAGGTGGTTTCATTTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR GCA 72 bp | TATACTGTCAGCAGCATAAAAATGAAACCACCTGACTaGAGCCCATTAGAGGAATGGATAAAGGAAGGTCTA | + |
Preference number: 3 (lower is better) Translates to: YTVSSIKMKPPD*SPLEEWIKEGL Trigger: TAGACCTTCCTTTATCCATTCCTCTAATGGGCTGCAGTCAGGTGGTTTCATTTTTATGCTGCTGACAGTATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR CAA 90 bp | CTAAGCCTGTTTATCTGTTTACCATCACCAAGTACTAGAGTAAGAAAGAATACACCTAAGTGTCTTCCTTaGAATCAAAGGGGGCGGTGT | + |
Preference number: 3 (lower is better) Translates to: LSLFICLPSPSTRVRKNTPKCLP*NQRGRC Trigger: ACACCGCCCCCTTTGATTCAAAGGAAGACACTTAGG...TGTATTCTTTCTTACTCTAGTACTTGGTGATGGTAAACAGATAAACAGGCTTAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR-3UTR CAA 90 bp | GTTATGGAAATGAGTGTGACCTGTTTTATAAAAGAAGGTGTACAAAGGGTGAAGTTGTATGATGCTTTATaGTATGCTACAGCCAGTGTA | + |
Preference number: 3 (lower is better) Translates to: VMEMSVTCFIKEGVQRVKLYDAL*YATASV Trigger: TACACTGGCTGTAGCATACAATAAAGCATCATACAA...CTTCACCCTTTGTACACCTTCTTTTATAAAACAGGTCACACTCATTTCCATAAC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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3UTR GCA 72 bp | AATAATACATTATTATACTTTGAATCTGAGTTGGTGTaGTACAACACACAAGGTGTGATCAGTTTAGGGGTA | + |
Preference number: 3 (lower is better) Translates to: NNTLLYFESELV*YNTQGVISLGV Trigger: TACCCCTAAACTGATCACACCTTGTGTGTTGTAGCACACCAACTCAGATTCAAAGTATAATAATGTATTATT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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CDS-3UTR CCA 90 bp | ACCCCAACATTGCTTTCCCTAGCTCTCTGCTGTGCTACTCACACCTTGGGTCTCTCCAGCCGGAGCTGCTaGACCACCTTCTTCATGGCG | + |
Preference number: 4 (lower is better) Translates to: TPTLLSLALCCATHTLGLSSRSC*TTFFMA Trigger: CGCCATGAAGAAGGTGGTCCAGCAGCTCCGGCTGGA...GAGACCCAAGGTGTGAGTAGCACAGCAGAGAGCTAGGGAAAGCAATGTTGGGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000118280.2 |
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CDS-3UTR CCA 90 bp | GTAAGGAGGCCAAAGGTTTGTATGATGCTTTATTGTATGCTACAGCCAGTGTATTCCAGCCGGAGCTGCTaGACCACCTTCTTCATGGCG | + |
Preference number: 4 (lower is better) Translates to: VRRPKVCMMLYCMLQPVYSSRSC*TTFFMA Trigger: CGCCATGAAGAAGGTGGTCCAGCAGCTCCGGCTGGA...ATACACTGGCTGTAGCATACAATAAAGCATCATACAAACCTTTGGCCTCCTTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000090031.12 |
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CDS CCA 72 bp | GTCTGCAGCTGCCTGGGAAACCTCTTTGTTCGAGGCTaGACCCCCACAAAGGTGGAGTCCGGAGACTCCCGG | + |
Preference number: 6 (lower is better) Translates to: VCSCLGNLFVRG*TPTKVESGDSR Trigger: CCGGGAGTCTCCGGACTCCACCTTTGTGGGGGTCCAGCCTCGAACAAAGAGGTTTCCCAGGCAGCTGCAGAC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000119130.2 |