Pregenerated sensors for GNG13 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000025739Ensembl transcript IDs: ENSMUST00000115108.4, ENSMUST00000172002.8
Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCGGACGAGTGGCGCATGGGTGTGGCAGTGGGCAGGAGTGAGGTGTaGTTCCGGTTCAACGAGGGCGTCTCAAATGCTGTTCGGCGCAGC | + |
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Preference number: 1 (lower is better) Translates to: ADEWRMGVAVGRSEV*FRFNEGVSNAVRRS Trigger: GCTGCGCCGAACAGCATTTGAGACGCCCTCGTTGAACCGGAACCACACCTCACTCCTGCCCACTGCCACACCCATGCGCCACTCGTCCGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| 3UTR GCA 90 bp | AGGGCGTCTCAAATGCTGTTCGGCGCAGCCTGTACATCAGGGACCTaGTGTAGCCCCACTGCCCCAGGACATCAGATCGCACTGGCTCCC | + |
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Preference number: 1 (lower is better) Translates to: RASQMLFGAACTSGT*CSPTAPGHQIALAP Trigger: GGGAGCCAGTGCGATCTGATGTCCTGGGGCAGTGGGGCTACAGCAGGTCCCTGATGTACAGGCTGCGCCGAACAGCATTTGAGACGCCCT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| 3UTR-3UTR CCA 90 bp | AAAGTGGCAGTCCCGAGCAGAGGTGTGTATGGGTCACAGAAGGAAGGGAGGGGGGCATGGGTGTGGCAGTaGGCAGGAGTGAGGTGTGGT | + |
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Preference number: 2 (lower is better) Translates to: KVAVPSRGVYGSQKEGRGAWVWQ*AGVRCG Trigger: ACCACACCTCACTCCTGCCCACTGCCACACCCATGC...CCCCCTCCCTTCCTTCTGTGACCCATACACACCTCTGCTCGGGACTGCCACTTT 60% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| 3UTR-3UTR CCA 90 bp | GTGGTCATCAGGAAAGTGGCAGTCCCGAGCAGAGGTGTGTATGGGTCACAGAAGGGTGGAGACATAGGCTaGGGTCTGCTGAGGTGCAAA | + |
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Preference number: 2 (lower is better) Translates to: VVIRKVAVPSRGVYGSQKGGDIG*GLLRCK Trigger: TTTGCACCTCAGCAGACCCCAGCCTATGTCTCCACC...CTTCTGTGACCCATACACACCTCTGCTCGGGACTGCCACTTTCCTGATGACCAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| 3UTR CCA 72 bp | AGAAGGACGCGGACGAGTGGCGCATGGGTGTGGCAGTaGGCAGGAGTGAGGTGTGGTTCCGGTTCAACGAGG | + |
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Preference number: 3 (lower is better) Translates to: RRTRTSGAWVWQ*AGVRCGSGSTR Trigger: CCTCGTTGAACCGGAACCACACCTCACTCCTGCCCACTGCCACACCCATGCGCCACTCGTCCGCGTCCTTCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| 3UTR CCA 72 bp | TGGCGCATGGGTGTGGCAGTGGGCAGGAGTGAGGTGTaGTTCCGGTTCAACGAGGGCGTCTCAAATGCTGTT | + |
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Preference number: 3 (lower is better) Translates to: WRMGVAVGRSEV*FRFNEGVSNAV Trigger: AACAGCATTTGAGACGCCCTCGTTGAACCGGAACCACACCTCACTCCTGCCCACTGCCACACCCATGCGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| 3UTR CCA 72 bp | GGTCACAGAAGGAAGGGAGGGGGTGGAGACATAGGCTaGGGTCTGCTGAGGTGCAAACCTTTTGGTCCCTGC | + |
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Preference number: 3 (lower is better) Translates to: GHRRKGGGGDIG*GLLRCKPFGPC Trigger: GCAGGGACCAAAAGGTTTGCACCTCAGCAGACCCCAGCCTATGTCTCCACCCCCTCCCTTCCTTCTGTGACC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| 3UTR CCA 72 bp | AGAGGTGTGTATGGGTCACAGAAGGAAGGGAGGGGGTaGAGACATAGGCTGGGGTCTGCTGAGGTGCAAACC | + |
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Preference number: 3 (lower is better) Translates to: RGVYGSQKEGRG*RHRLGSAEVQT Trigger: GGTTTGCACCTCAGCAGACCCCAGCCTATGTCTCCACCCCCTCCCTTCCTTCTGTGACCCATACACACCTCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| 3UTR CCA 72 bp | CCCAGGACATCAGATCGCACTGGCTCCCACAGGGAATaGACTAAAGCAGAGACACCCGGAGAAGTCTATTTA | + |
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Preference number: 3 (lower is better) Translates to: PRTSDRTGSHRE*TKAETPGEVYL Trigger: TAAATAGACTTCTCCGGGTGTCTCTGCTTTAGTCCATTCCCTGTGGGAGCCAGTGCGATCTGATGTCCTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| CDS-3UTR CCA 90 bp | ATGCTGTTCGGCGCAGCCTGTACATCAGGGACCTGCTGTAGCCCCACTGCCCCACTCTTGAAGGCCAGTTaGTACTTGAGGCTCTCTACC | + |
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Preference number: 4 (lower is better) Translates to: MLFGAACTSGTCCSPTAPLLKAS*YLRLST Trigger: GGTAGAGAGCCTCAAGTACCAACTGGCCTTCAAGAG...TGGGGCAGTGGGGCTACAGCAGGTCCCTGATGTACAGGCTGCGCCGAACAGCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| CDS-3UTR CCA 90 bp | GTGTGGCAGTGGGCAGGAGTGAGGTGTGGTTCCGGTTCAACGAGGGCGTCTCAAGTTCTTCATCAGGTCTaGGTTCAGGAAGGGGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: VWQWAGVRCGSGSTRASQVLHQV*VQEGVL Trigger: AAGGACCCCTTCCTGAACCCAGACCTGATGAAGAAC...TTGAGACGCCCTCGTTGAACCGGAACCACACCTCACTCCTGCCCACTGCCACAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| CDS-3UTR CCA 90 bp | ATCAGGAAAGTGGCAGTCCCGAGCAGAGGTGTGTATGGGTCACAGAAGGAAGGGACCTCCTTCTTCATCTaGGGCACATCCCACTCCTCC | + |
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Preference number: 4 (lower is better) Translates to: IRKVAVPSRGVYGSQKEGTSFFI*GTSHSS Trigger: GGAGGAGTGGGATGTGCCCCAGATGAAGAAGGAGGT...CCCTTCCTTCTGTGACCCATACACACCTCTGCTCGGGACTGCCACTTTCCTGAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| CDS-3UTR CCA 90 bp | GGTGTGGTTCCGGTTCAACGAGGGCGTCTCAAATGCTGTTCGGCGCAGCCTGTAATAGGATGGTGCACTTaGCCTTCTCTACCCAAGGGT | + |
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Preference number: 4 (lower is better) Translates to: GVVPVQRGRLKCCSAQPVIGWCT*PSLPKG Trigger: ACCCTTGGGTAGAGAAGGCCAAGTGCACCATCCTAT...TACAGGCTGCGCCGAACAGCATTTGAGACGCCCTCGTTGAACCGGAACCACACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| CDS-3UTR CAA 90 bp | GTGGCAGTCCCGAGCAGAGGTGTGTATGGGTCACAGAAGGAAGGGAGGGGGTGGAGCTCGGGGATGGTCTaGGACGACATCTCCCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: VAVPSRGVYGSQKEGRGWSSGMV*DDISLL Trigger: CAAGAGGGAGATGTCGTCCAAGACCATCCCCGAGCT...CCACCCCCTCCCTTCCTTCTGTGACCCATACACACCTCTGCTCGGGACTGCCAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| CDS-3UTR CAA 90 bp | AGGAAAGTGGCAGTCCCGAGCAGAGGTGTGTATGGGTCACAGAAGGAAGGGAGGCATAGGATGGTGCACTaGGCCTTCTCTACCCAAGGG | + |
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Preference number: 5 (lower is better) Translates to: RKVAVPSRGVYGSQKEGRHRMVH*AFSTQG Trigger: CCCTTGGGTAGAGAAGGCCAAGTGCACCATCCTATG...CCTCCCTTCCTTCTGTGACCCATACACACCTCTGCTCGGGACTGCCACTTTCCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| CDS CCA 90 bp | AGCTCGGGGATGGTCTTGGACGACATCTCCCTCTTGAAGGCCAGTTaGTACTTGAGGCTCTCTACCTCCTTCTTCATCTGGGGCACATCC | + |
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Preference number: 5 (lower is better) Translates to: SSGMVLDDISLLKAS*YLRLSTSFFIWGTS Trigger: GGATGTGCCCCAGATGAAGAAGGAGGTAGAGAGCCTCAAGTACCAACTGGCCTTCAAGAGGGAGATGTCGTCCAAGACCATCCCCGAGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS-3UTR CAA 90 bp | AGGAAAGTGGCAGTCCCGAGCAGAGGTGTGTATGGGTCACAGAAGGAAGGGAGGCCTCTTGAAGGCCAGTaGGTACTTGAGGCTCTCTAC | + |
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Preference number: 5 (lower is better) Translates to: RKVAVPSRGVYGSQKEGRPLEGQ*VLEALY Trigger: GTAGAGAGCCTCAAGTACCAACTGGCCTTCAAGAGG...CCTCCCTTCCTTCTGTGACCCATACACACCTCTGCTCGGGACTGCCACTTTCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| CDS-3UTR CAA 90 bp | ACGTGTGGTCATCAGGAAAGTGGCAGTCCCGAGCAGAGGTGTGTATGGGTCACAGACGACATCTCCCTCTaGAAGGCCAGTTGGTACTTG | + |
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Preference number: 5 (lower is better) Translates to: TCGHQESGSPEQRCVWVTDDISL*KASWYL Trigger: CAAGTACCAACTGGCCTTCAAGAGGGAGATGTCGTC...TGTGACCCATACACACCTCTGCTCGGGACTGCCACTTTCCTGATGACCACACGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| CDS-3UTR CAA 90 bp | AGGAAGGGAGGGGGTGGAGACATAGGCTGGGGTCTGCTGAGGTGCAAACCTTTTTTCTCTACCCAAGGGTaGTTCTTCATCAGGTCTGGG | + |
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Preference number: 5 (lower is better) Translates to: RKGGGGDIGWGLLRCKPFFSTQG*FFIRSG Trigger: CCCAGACCTGATGAAGAACAACCCTTGGGTAGAGAA...AAAAGGTTTGCACCTCAGCAGACCCCAGCCTATGTCTCCACCCCCTCCCTTCCT 54% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000172002.8 |
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| CDS CCA 90 bp | GGTGCACTTGGCCTTCTCTACCCAAGGGTTGTTCTTCATCAGGTCTaGGTTCAGGAAGGGGTCCTTGGGGATTCCATCCTCAATCCACTT | + |
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Preference number: 5 (lower is better) Translates to: GALGLLYPRVVLHQV*VQEGVLGDSILNPL Trigger: AAGTGGATTGAGGATGGAATCCCCAAGGACCCCTTCCTGAACCCAGACCTGATGAAGAACAACCCTTGGGTAGAGAAGGCCAAGTGCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS CAA 90 bp | GGGATGGTCTTGGACGACATCTCCCTCTTGAAGGCCAGTTGGTACTaGAGGCTCTCTACCTCCTTCTTCATCTGGGGCACATCCCACTCC | + |
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Preference number: 6 (lower is better) Translates to: GMVLDDISLLKASWY*RLSTSFFIWGTSHS Trigger: GGAGTGGGATGTGCCCCAGATGAAGAAGGAGGTAGAGAGCCTCAAGTACCAACTGGCCTTCAAGAGGGAGATGTCGTCCAAGACCATCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS CCA 72 bp | GGCCTTCTCTACCCAAGGGTTGTTCTTCATCAGGTCTaGGTTCAGGAAGGGGTCCTTGGGGATTCCATCCTC | + |
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Preference number: 6 (lower is better) Translates to: GLLYPRVVLHQV*VQEGVLGDSIL Trigger: GAGGATGGAATCCCCAAGGACCCCTTCCTGAACCCAGACCTGATGAAGAACAACCCTTGGGTAGAGAAGGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS CAA 72 bp | AGAAGCTCGGGGATGGTCTTGGACGACATCTCCCTCTaGAAGGCCAGTTGGTACTTGAGGCTCTCTACCTCC | + |
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Preference number: 6 (lower is better) Translates to: RSSGMVLDDISL*KASWYLRLSTS Trigger: GGAGGTAGAGAGCCTCAAGTACCAACTGGCCTTCAAGAGGGAGATGTCGTCCAAGACCATCCCCGAGCTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS CAA 90 bp | AAGCTCGGGGATGGTCTTGGACGACATCTCCCTCTTGAAGGCCAGTaGGTACTTGAGGCTCTCTACCTCCTTCTTCATCTGGGGCACATC | + |
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Preference number: 6 (lower is better) Translates to: KLGDGLGRHLPLEGQ*VLEALYLLLHLGHI Trigger: GATGTGCCCCAGATGAAGAAGGAGGTAGAGAGCCTCAAGTACCAACTGGCCTTCAAGAGGGAGATGTCGTCCAAGACCATCCCCGAGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS CAA 72 bp | CCATCCTCAATCCACTTGAGAAGCTCGGGGATGGTCTaGGACGACATCTCCCTCTTGAAGGCCAGTTGGTAC | + |
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Preference number: 6 (lower is better) Translates to: PSSIHLRSSGMV*DDISLLKASWY Trigger: GTACCAACTGGCCTTCAAGAGGGAGATGTCGTCCAAGACCATCCCCGAGCTTCTCAAGTGGATTGAGGATGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS CAA 72 bp | CATAGGATGGTGCACTTGGCCTTCTCTACCCAAGGGTaGTTCTTCATCAGGTCTGGGTTCAGGAAGGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: HRMVHLAFSTQG*FFIRSGFRKGS Trigger: GGACCCCTTCCTGAACCCAGACCTGATGAAGAACAACCCTTGGGTAGAGAAGGCCAAGTGCACCATCCTATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS CAA 72 bp | TTGGACGACATCTCCCTCTTGAAGGCCAGTTGGTACTaGAGGCTCTCTACCTCCTTCTTCATCTGGGGCACA | + |
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Preference number: 6 (lower is better) Translates to: LDDISLLKASWY*RLSTSFFIWGT Trigger: TGTGCCCCAGATGAAGAAGGAGGTAGAGAGCCTCAAGTACCAACTGGCCTTCAAGAGGGAGATGTCGTCCAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS CAA 90 bp | ATCCACTTGAGAAGCTCGGGGATGGTCTTGGACGACATCTCCCTCTaGAAGGCCAGTTGGTACTTGAGGCTCTCTACCTCCTTCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: IHLRSSGMVLDDISL*KASWYLRLSTSFFI Trigger: GATGAAGAAGGAGGTAGAGAGCCTCAAGTACCAACTGGCCTTCAAGAGGGAGATGTCGTCCAAGACCATCCCCGAGCTTCTCAAGTGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS CCA 72 bp | ATGGTCTTGGACGACATCTCCCTCTTGAAGGCCAGTTaGTACTTGAGGCTCTCTACCTCCTTCTTCATCTGG | + |
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Preference number: 6 (lower is better) Translates to: MVLDDISLLKAS*YLRLSTSFFIW Trigger: CCAGATGAAGAAGGAGGTAGAGAGCCTCAAGTACCAACTGGCCTTCAAGAGGGAGATGTCGTCCAAGACCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS CAA 72 bp | GATGGTCTTGGACGACATCTCCCTCTTGAAGGCCAGTaGGTACTTGAGGCTCTCTACCTCCTTCTTCATCTG | + |
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Preference number: 6 (lower is better) Translates to: DGLGRHLPLEGQ*VLEALYLLLHL Trigger: CAGATGAAGAAGGAGGTAGAGAGCCTCAAGTACCAACTGGCCTTCAAGAGGGAGATGTCGTCCAAGACCATC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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| CDS CAA 72 bp | TTGTTCTTCATCAGGTCTGGGTTCAGGAAGGGGTCCTaGGGGATTCCATCCTCAATCCACTTGAGAAGCTCG | + |
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Preference number: 6 (lower is better) Translates to: LFFIRSGFRKGS*GIPSSIHLRSS Trigger: CGAGCTTCTCAAGTGGATTGAGGATGGAATCCCCAAGGACCCCTTCCTGAACCCAGACCTGATGAAGAACAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000115108.4 ENSMUST00000172002.8 |
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