RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GNG12 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000036402

Ensembl transcript IDs: ENSMUST00000043148.13, ENSMUST00000114222.4, ENSMUST00000114224.8, ENSMUST00000114225.8, ENSMUST00000114226.8, ENSMUST00000114227.8, ENSMUST00000114228.8, ENSMUST00000204511.3, ENSMUST00000204862.2

Found 123 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CTGAGGTGGCCACCCCCAATCCAGCAGAGATCAAGAGCCCTGGAGTaGAAGCTGCCTCCTGAGGGTCTCTTCCCCTTTCTTAGCCTCAGG +
Preference number: 1 (lower is better)
Translates to: LRWPPPIQQRSRALE*KLPPEGLFPFLSLR
Trigger: CCTGAGGCTAAGAAAGGGGAAGAGACCCTCAGGAGGCAGCTTCCACTCCAGGGCTCTTGATCTCTGCTGGATTGGGGGTGGCCACCTCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR TCA 90 bp CTGGGAATAGGGAGGCTCTCAGCTTCTTCTGCTTCTATTCCCTTGTaGCAACAAGGGAAGGGGAGGCTCAGAGAGCTGACGTGCCTGGTC +
Preference number: 1 (lower is better)
Translates to: LGIGRLSASSASIPL*QQGKGRLRELTCLV
Trigger: GACCAGGCACGTCAGCTCTCTGAGCCTCCCCTTCCCTTGTTGTCACAAGGGAATAGAAGCAGAAGAAGCTGAGAGCCTCCCTATTCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 90 bp CTCCCGCCTGAGCAGGTGTCTTTAATCCAGCTGGGAGCTAAGCAGTaGGAACAGGTTGTGGGCAGTGCTATGGATTTCACACGCTCAGTT +
Preference number: 1 (lower is better)
Translates to: LPPEQVSLIQLGAKQ*EQVVGSAMDFTRSV
Trigger: AACTGAGCGTGTGAAATCCATAGCACTGCCCACAACCTGTTCTCACTGCTTAGCTCCCAGCTGGATTAAAGACACCTGCTCAGGCGGGAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR GCA 90 bp CATTCCACCAGGGCATCTGGGAATAGGGAGGCTCTCAGCTTCTTCTaGTTCTATTCCCTTGTGACAACAAGGGAAGGGGAGGCTCAGAGA +
Preference number: 1 (lower is better)
Translates to: HSTRASGNREALSFF*FYSLVTTREGEAQR
Trigger: TCTCTGAGCCTCCCCTTCCCTTGTTGTCACAAGGGAATAGAAGCAGAAGAAGCTGAGAGCCTCCCTATTCCCAGATGCCCTGGTGGAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 90 bp CGAGAGAAGGGTGTTTTAGTTACTAGCTGTGGTTACCAGGTAAGCTaGAGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGC +
Preference number: 1 (lower is better)
Translates to: REKGVLVTSCGYQVS*RNPFRLLLWFALRG
Trigger: GCCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCTTCAGCTTACCTGGTAACCACAGCTAGTAACTAAAACACCCTTCTCTCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
3UTR GCA 90 bp AGCCAAGTTGTCAGTGTGGGAAAAACACTCCACATGGGACTTCTGTaGATCATGACATCACCAACATACTGCTGCAGTTACCGGCTTCAT +
Preference number: 1 (lower is better)
Translates to: SQVVSVGKTLHMGLL*IMTSPTYCCSYRLH
Trigger: ATGAAGCCGGTAACTGCAGCAGTATGTTGGTGATGTCATGATGCACAGAAGTCCCATGTGGAGTGTTTTTCCCACACTGACAACTTGGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR GCA 90 bp AAGTCACCCGGCACAGGACTGACCAGGCCATCGACCACTGGTAAATaGTCTATTCTATCTGATTTGACGTATTTTTCCTGCTTACAGGCT +
Preference number: 1 (lower is better)
Translates to: KSPGTGLTRPSTTGK*SILSDLTYFSCLQA
Trigger: AGCCTGTAAGCAGGAAAAATACGTCAAATCAGATAGAATAGAGCATTTACCAGTGGTCGATGGCCTGGTCAGTCCTGTGCCGGGTGACTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 90 bp TTGTCAGTGTGGGAAAAACACTCCACATGGGACTTCTGTGCATCATaGCATCACCAACATACTGCTGCAGTTACCGGCTTCATAAGTGAA +
Preference number: 1 (lower is better)
Translates to: LSVWEKHSTWDFCAS*HHQHTAAVTGFISE
Trigger: TTCACTTATGAAGCCGGTAACTGCAGCAGTATGTTGGTGATGTCATGATGCACAGAAGTCCCATGTGGAGTGTTTTTCCCACACTGACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 90 bp ATAAAGAGTATAGTGCTCGCGGGAGTGTTAGTTCAGACAACAGACTaGACACACAGAAAGGAAGCCAAGTTGTCAGTGTGGGAAAAACAC +
Preference number: 1 (lower is better)
Translates to: IKSIVLAGVLVQTTD*THRKEAKLSVWEKH
Trigger: GTGTTTTTCCCACACTGACAACTTGGCTTCCTTTCTGTGTGTTCAGTCTGTTGTCTGAACTAACACTCCCGCGAGCACTATACTCTTTAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 90 bp CAAACATCATGGCATACTTCAGTATTACATTTATTTCATTGGAGGTaGCTCTTGGGCCTGTGCATGGACACCCCTTTAAGACAAATTCAG +
Preference number: 1 (lower is better)
Translates to: QTSWHTSVLHLFHWR*LLGLCMDTPLRQIQ
Trigger: CTGAATTTGTCTTAAAGGGGTGTCCATGCACAGGCCCAAGAGTCACCTCCAATGAAATAAATGTAATACTGAAGTATGCCATGATGTTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 90 bp GAAATAGTTAAGTCCATAAACCTAGAACAGGCACTGGATAACAAGTaGTTAGGTGAGTACACACTACAGACAAACTGGTATTTGAAGCAG +
Preference number: 1 (lower is better)
Translates to: EIVKSINLEQALDNK*LGEYTLQTNWYLKQ
Trigger: CTGCTTCAAATACCAGTTTGTCTGTAGTGTGTACTCACCTAATCACTTGTTATCCAGTGCCTGTTCTAGGTTTATGGACTTAACTATTTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 90 bp CAGATCTGGTTAGGAAGTTACAAGATATTTATTGTCTCTAATCAATaGAAAGGCAACAAAACCTCCTGGGACCTCAAGTTCATTTCTTAC +
Preference number: 1 (lower is better)
Translates to: QIWLGSYKIFIVSNQ*KGNKTSWDLKFISY
Trigger: GTAAGAAATGAACTTGAGGTCCCAGGAGGTTTTGTTGCCTTTTCATTGATTAGAGACAATAAATATCTTGTAACTTCCTAACCAGATCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR GCA 90 bp ACCACTGGTAAATGCTCTATTCTATCTGATTTGACGTATTTTTCCTaGTTACAGGCTTACGATGAAAGAAAACAACAAACATCATGGCAT +
Preference number: 1 (lower is better)
Translates to: TTGKCSILSDLTYFS*LQAYDERKQQTSWH
Trigger: ATGCCATGATGTTTGTTGTTTTCTTTCATCGTAAGCCTGTAAGCAGGAAAAATACGTCAAATCAGATAGAATAGAGCATTTACCAGTGGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 90 bp CATGATTTCAAAGAAATGGAATATTTAGCTACAACCCGCAGCTTGTaGACTATCTGCTACATTTCCCCTCTTTCAAAATATGTATGTTTC +
Preference number: 1 (lower is better)
Translates to: HDFKEMEYLATTRSL*TICYISPLSKYVCF
Trigger: GAAACATACATATTTTGAAAGAGGGGAAATGTAGCAGATAGTTCACAAGCTGCGGGTTGTAGCTAAATATTCCATTTCTTTGAAATCATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR-3UTR GCA 90 bp GACGTGCCTGGTCCTAAGTCACCCGGCACAGGACTGACCAGGCCATCGACCACTCCCTGGAGTGGAAGCTaGCTCCTGAGGGTCTCTTCC +
Preference number: 2 (lower is better)
Translates to: DVPGPKSPGTGLTRPSTTPWSGS*LLRVSS
Trigger: GGAAGAGACCCTCAGGAGGCAGCTTCCACTCCAGGG...AGTGGTCGATGGCCTGGTCAGTCCTGTGCCGGGTGACTTAGGACCAGGCACGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR-3UTR CCA 90 bp GCTGCTCTAGCAGTAAGGGCAGGTACCATGCTGGTGAGGAGAAAGGGGCAGGGCTCAAGAGCCCTGGAGTaGAAGCTGCCTCCTGAGGGT +
Preference number: 2 (lower is better)
Translates to: AALAVRAGTMLVRRKGQGSRALE*KLPPEG
Trigger: ACCCTCAGGAGGCAGCTTCCACTCCAGGGCTCTTGA...GCCCTGCCCCTTTCTCCTCACCAGCATGGTACCTGCCCTTACTGCTAGAGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR-3UTR GCA 90 bp CTCTCGGTCCCCTCTTCCATTCCAGTCATGAGGGTGGAAGTTTCTGAGGTGGCCCCCTGGAGTGGAAGCTaGCTCCTGAGGGTCTCTTCC +
Preference number: 2 (lower is better)
Translates to: LSVPSSIPVMRVEVSEVAPWSGS*LLRVSS
Trigger: GGAAGAGACCCTCAGGAGGCAGCTTCCACTCCAGGG...GGCCACCTCAGAAACTTCCACCCTCATGACTGGAATGGAAGAGGGGACCGAGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR-3UTR CCA 90 bp ACTAGCAAGCCTCCCTTTGGAAGGGCCCTCCCCCAGGGTGGTTTGTGGACATGGCAGGAAGTTTCAGGGTaGTTAGTGCCCATAGTGCAA +
Preference number: 2 (lower is better)
Translates to: TSKPPFGRALPQGGLWTWQEVSG*LVPIVQ
Trigger: TTGCACTATGGGCACTAACCACCCTGAAACTTCCTG...CCATGTCCACAAACCACCCTGGGGGAGGGCCCTTCCAAAGGGAGGCTTGCTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR-3UTR GCA 90 bp ACTAGCAAGCCTCCCTTTGGAAGGGCCCTCCCCCAGGGTGGTTTGTGGACATGGGGAAGTATAGGCATCTaGAAAGAGCCCAAGTGTCTT +
Preference number: 2 (lower is better)
Translates to: TSKPPFGRALPQGGLWTWGSIGI*KEPKCL
Trigger: AAGACACTTGGGCTCTTTGCAGATGCCTATACTTCC...CCATGTCCACAAACCACCCTGGGGGAGGGCCCTTCCAAAGGGAGGCTTGCTAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR-3UTR GCA 90 bp TGGGATCCCTACTGGACACTGCGAGGGTACGTGGGCTATTTTCACAATTGGAGTGTTGCTGCTGTGGTTTaGGTTAAGAGGCAAGGGGCG +
Preference number: 2 (lower is better)
Translates to: WDPYWTLRGYVGYFHNWSVAAVV*VKRQGA
Trigger: CGCCCCTTGCCTCTTAACGCAAACCACAGCAGCAAC...ACTCCAATTGTGAAAATAGCCCACGTACCCTCGCAGTGTCCAGTAGGGATCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR-3UTR CCA 90 bp GCCTCTGAGTCACTTAGGAACAGGACTGCATGTTTACCACCAAGAAGCATGACGTCAAGAGCCCTGGAGTaGAAGCTGCCTCCTGAGGGT +
Preference number: 2 (lower is better)
Translates to: ASESLRNRTACLPPRSMTSRALE*KLPPEG
Trigger: ACCCTCAGGAGGCAGCTTCCACTCCAGGGCTCTTGA...CGTCATGCTTCTTGGTGGTAAACATGCAGTCCTGTTCCTAAGTGACTCAGAGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR-3UTR TCA 90 bp GACGTGCCTGGTCCTAAGTCACCCGGCACAGGACTGACCAGGCCATCGACCACTTCATTATTATTATTGTaGGCACAGCTCAGATCTGGT +
Preference number: 2 (lower is better)
Translates to: DVPGPKSPGTGLTRPSTTSLLLL*AQLRSG
Trigger: ACCAGATCTGAGCTGTGCTCACAATAATAATAATGA...AGTGGTCGATGGCCTGGTCAGTCCTGTGCCGGGTGACTTAGGACCAGGCACGTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR-3UTR GCA 90 bp GCTGCTCTAGCAGTAAGGGCAGGTACCATGCTGGTGAGGAGAAAGGGGCAGGGCATTTTAATTTGCCGGTaGTTAGACAATGTAGGTCTT +
Preference number: 2 (lower is better)
Translates to: AALAVRAGTMLVRRKGQGILICR*LDNVGL
Trigger: AAGACCTACATTGTCTAAGCACCGGCAAATTAAAAT...GCCCTGCCCCTTTCTCCTCACCAGCATGGTACCTGCCCTTACTGCTAGAGCAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR-3UTR TCA 90 bp ATCCTTTCTTGGTTATGTGCCTCTGGGATCCCTACTGGACACTGCGAGGGTACGAGAAGCCCAAATGACTaGTATGAGTTAAGACCCCAT +
Preference number: 2 (lower is better)
Translates to: ILSWLCASGIPTGHCEGTRSPND*YELRPH
Trigger: ATGGGGTCTTAACTCATATCAGTCATTTGGGCTTCT...CGTACCCTCGCAGTGTCCAGTAGGGATCCCAGAGGCACATAACCAAGAAAGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR-3UTR GCA 90 bp AAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATATGTTGCTGCTGTGGTTTaGGTTAAGAGGCAAGGGGCG +
Preference number: 2 (lower is better)
Translates to: KTSFPQLPCHFPYTVTQYVAAVV*VKRQGA
Trigger: CGCCCCTTGCCTCTTAACGCAAACCACAGCAGCAAC...ATATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
3UTR-3UTR GCA 90 bp GGAAGCCAAGTTGTCAGTGTGGGAAAAACACTCCACATGGGACTTCTGTGCATCGGAAGTATAGGCATCTaGAAAGAGCCCAAGTGTCTT +
Preference number: 2 (lower is better)
Translates to: GSQVVSVGKTLHMGLLCIGSIGI*KEPKCL
Trigger: AAGACACTTGGGCTCTTTGCAGATGCCTATACTTCC...GATGCACAGAAGTCCCATGTGGAGTGTTTTTCCCACACTGACAACTTGGCTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR-3UTR CCA 90 bp GGAAGCCAAGTTGTCAGTGTGGGAAAAACACTCCACATGGGACTTCTGTGCATCAGCAGATGGGTAACGTaGAGAAATTCTGATGCCTCT +
Preference number: 2 (lower is better)
Translates to: GSQVVSVGKTLHMGLLCISRWVT*RNSDAS
Trigger: AGAGGCATCAGAATTTCTCCACGTTACCCATCTGCT...GATGCACAGAAGTCCCATGTGGAGTGTTTTTCCCACACTGACAACTTGGCTTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR-3UTR GCA 90 bp GAAGTGATTCTCGACATTTTAATTTGCCGGTGCTTAGACAATGTAGGTCTTGACGTTGCTGCTGTGGTTTaGGTTAAGAGGCAAGGGGCG +
Preference number: 2 (lower is better)
Translates to: EVILDILICRCLDNVGLDVAAVV*VKRQGA
Trigger: CGCCCCTTGCCTCTTAACGCAAACCACAGCAGCAAC...GTCAAGACCTACATTGTCTAAGCACCGGCAAATTAAAATGTCGAGAATCACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
3UTR-3UTR GCA 90 bp AGGGGCCAGCACAATTCCAAGAGAGGAGTGAGAACAGCATCAACTCATTATAATATGGTTGTAGACACATaGCTCCTCCCCAGATCCCTT +
Preference number: 2 (lower is better)
Translates to: RGQHNSKRGVRTASTHYNMVVDT*LLPRSL
Trigger: AAGGGATCTGGGGAGGAGGCATGTGTCTACAACCAT...ATTATAATGAGTTGATGCTGTTCTCACTCCTCTCTTGGAATTGTGCTGGCCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
3UTR-3UTR TCA 90 bp ATTGTGAGCACAGCTCAGATCTGGTTAGGAAGTTACAAGATATTTATTGTCTCTGTGGAAGCTGCCTCCTaGGGGTCTCTTCCCCTTTCT +
Preference number: 2 (lower is better)
Translates to: IVSTAQIWLGSYKIFIVSVEAAS*GSLPLS
Trigger: AGAAAGGGGAAGAGACCCTCAGGAGGCAGCTTCCAC...AGAGACAATAAATATCTTGTAACTTCCTAACCAGATCTGAGCTGTGCTCACAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR-3UTR GCA 90 bp GGCAGTGCTATGGATTTCACACGCTCAGTTCCGAGTGCCAAGCAGATGGGTAACAATGCAGATGATCTTTaGAACGTTCTTTCATTACCT +
Preference number: 2 (lower is better)
Translates to: GSAMDFTRSVPSAKQMGNNADDL*NVLSLP
Trigger: AGGTAATGAAAGAACGTTGCAAAGATCATCTGCATT...GTTACCCATCTGCTTGGCACTCGGAACTGAGCGTGTGAAATCCATAGCACTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR-3UTR GCA 90 bp GCCTCTGAGTCACTTAGGAACAGGACTGCATGTTTACCACCAAGAAGCATGACGCTCGACATTTTAATTTaGCGGTGCTTAGACAATGTA +
Preference number: 2 (lower is better)
Translates to: ASESLRNRTACLPPRSMTLDILI*RCLDNV
Trigger: TACATTGTCTAAGCACCGGCAAATTAAAATGTCGAG...CGTCATGCTTCTTGGTGGTAAACATGCAGTCCTGTTCCTAAGTGACTCAGAGGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR-3UTR GCA 90 bp TTACCACCAAGAAGCATGACGCTCAGAGCCCAGGCATTAGATATTAAAATACATATGGTTGTAGACACATaGCTCCTCCCCAGATCCCTT +
Preference number: 2 (lower is better)
Translates to: LPPRSMTLRAQALDIKIHMVVDT*LLPRSL
Trigger: AAGGGATCTGGGGAGGAGGCATGTGTCTACAACCAT...ATGTATTTTAATATCTAATGCCTGGGCTCTGAGCGTCATGCTTCTTGGTGGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR-3UTR GCA 90 bp GAAGTGATTCTCGACATTTTAATTTGCCGGTGCTTAGACAATGTAGGTCTTGACTTCCCACAACTCCCCTaGCATTTTCCTTATACAGTA +
Preference number: 2 (lower is better)
Translates to: EVILDILICRCLDNVGLDFPQLP*HFPYTV
Trigger: TACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAA...GTCAAGACCTACATTGTCTAAGCACCGGCAAATTAAAATGTCGAGAATCACTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
3UTR-3UTR GCA 90 bp CAGCATCAACTCATTATAATGCAGATGATCTTTGCAACGTTCTTTCATTACCTTATGGTTGTAGACACATaGCTCCTCCCCAGATCCCTT +
Preference number: 2 (lower is better)
Translates to: QHQLIIMQMIFATFFHYLMVVDT*LLPRSL
Trigger: AAGGGATCTGGGGAGGAGGCATGTGTCTACAACCAT...AAGGTAATGAAAGAACGTTGCAAAGATCATCTGCATTATAATGAGTTGATGCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
3UTR-3UTR CCA 90 bp CAGCATCAACTCATTATAATGCAGATGATCTTTGCAACGTTCTTTCATTACCTTCAGGAAGTTTCAGGGTaGTTAGTGCCCATAGTGCAA +
Preference number: 2 (lower is better)
Translates to: QHQLIIMQMIFATFFHYLQEVSG*LVPIVQ
Trigger: TTGCACTATGGGCACTAACCACCCTGAAACTTCCTG...AAGGTAATGAAAGAACGTTGCAAAGATCATCTGCATTATAATGAGTTGATGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
3UTR CCA 72 bp GGTGGCCACCCCCAATCCAGCAGAGATCAAGAGCCCTaGAGTGGAAGCTGCCTCCTGAGGGTCTCTTCCCCT +
Preference number: 3 (lower is better)
Translates to: GGHPQSSRDQEP*SGSCLLRVSSP
Trigger: AGGGGAAGAGACCCTCAGGAGGCAGCTTCCACTCCAGGGCTCTTGATCTCTGCTGGATTGGGGGTGGCCACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR CCA 72 bp CCACCCCCAATCCAGCAGAGATCAAGAGCCCTGGAGTaGAAGCTGCCTCCTGAGGGTCTCTTCCCCTTTCTT +
Preference number: 3 (lower is better)
Translates to: PPPIQQRSRALE*KLPPEGLFPFL
Trigger: AAGAAAGGGGAAGAGACCCTCAGGAGGCAGCTTCCACTCCAGGGCTCTTGATCTCTGCTGGATTGGGGGTGG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR TCA 72 bp CTGACGTGCCTGGTCCTAAGTCACCCGGCACAGGACTaGCCAGGCCATCGACCACTGGTAAATGCTCTATTC +
Preference number: 3 (lower is better)
Translates to: LTCLVLSHPAQD*PGHRPLVNALF
Trigger: GAATAGAGCATTTACCAGTGGTCGATGGCCTGGTCAGTCCTGTGCCGGGTGACTTAGGACCAGGCACGTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR GCA 72 bp CAATCCAGCAGAGATCAAGAGCCCTGGAGTGGAAGCTaGCTCCTGAGGGTCTCTTCCCCTTTCTTAGCCTCA +
Preference number: 3 (lower is better)
Translates to: QSSRDQEPWSGS*LLRVSSPFLAS
Trigger: TGAGGCTAAGAAAGGGGAAGAGACCCTCAGGAGGCAGCTTCCACTCCAGGGCTCTTGATCTCTGCTGGATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR GCA 72 bp AAACTGGGAAGGAGGGAATGTCCCTCTACAAGCAGCTaGTCTAGCAGTAAGGGCAGGTACCATGCTGGTGAG +
Preference number: 3 (lower is better)
Translates to: KLGRRECPSTSS*SSSKGRYHAGE
Trigger: CTCACCAGCATGGTACCTGCCCTTACTGCTAGAGCAGCTGCTTGTAGAGGGACATTCCCTCCTTCCCAGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR GCA 72 bp AGGGCATCTGGGAATAGGGAGGCTCTCAGCTTCTTCTaGTTCTATTCCCTTGTGACAACAAGGGAAGGGGAG +
Preference number: 3 (lower is better)
Translates to: RASGNREALSFF*FYSLVTTREGE
Trigger: CTCCCCTTCCCTTGTTGTCACAAGGGAATAGAAGCAGAAGAAGCTGAGAGCCTCCCTATTCCCAGATGCCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR CCA 72 bp GCCTCTGGGATCCCTACTGGACACTGCGAGGGTACGTaGGCTATTTTCACAATTGGAGTAAAAGTGAGGACC +
Preference number: 3 (lower is better)
Translates to: ASGIPTGHCEGT*AIFTIGVKVRT
Trigger: GGTCCTCACTTTTACTCCAATTGTGAAAATAGCCCACGTACCCTCGCAGTGTCCAGTAGGGATCCCAGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR CCA 72 bp GAGCTAAGCAGTGAGAACAGGTTGTGGGCAGTGCTATaGATTTCACACGCTCAGTTCCGAGTGCCAAGCAGA +
Preference number: 3 (lower is better)
Translates to: ELSSENRLWAVL*ISHAQFRVPSR
Trigger: TCTGCTTGGCACTCGGAACTGAGCGTGTGAAATCCATAGCACTGCCCACAACCTGTTCTCACTGCTTAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR CCA 72 bp CACGCTCAGTTCCGAGTGCCAAGCAGATGGGTAACGTaGAGAAATTCTGATGCCTCTGAGTCACTTAGGAAC +
Preference number: 3 (lower is better)
Translates to: HAQFRVPSRWVT*RNSDASESLRN
Trigger: GTTCCTAAGTGACTCAGAGGCATCAGAATTTCTCCACGTTACCCATCTGCTTGGCACTCGGAACTGAGCGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 72 bp GAGCAGGTGTCTTTAATCCAGCTGGGAGCTAAGCAGTaGGAACAGGTTGTGGGCAGTGCTATGGATTTCACA +
Preference number: 3 (lower is better)
Translates to: EQVSLIQLGAKQ*EQVVGSAMDFT
Trigger: TGTGAAATCCATAGCACTGCCCACAACCTGTTCTCACTGCTTAGCTCCCAGCTGGATTAAAGACACCTGCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR GCA 72 bp TCTTGGTTATGTGCCTCTGGGATCCCTACTGGACACTaGGAGGGTACGTGGGCTATTTTCACAATTGGAGTA +
Preference number: 3 (lower is better)
Translates to: SWLCASGIPTGH*EGTWAIFTIGV
Trigger: TACTCCAATTGTGAAAATAGCCCACGTACCCTCGCAGTGTCCAGTAGGGATCCCAGAGGCACATAACCAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR TCA 72 bp GGTGTTTTAGTTACTAGCTGTGGTTACCAGGTAAGCTaGAGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCG +
Preference number: 3 (lower is better)
Translates to: GVLVTSCGYQVS*RNPFRLLLWFA
Trigger: CGCAAACCACAGCAGCAACCTGAAGGGATTCCTTCAGCTTACCTGGTAACCACAGCTAGTAACTAAAACACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
3UTR TCA 72 bp TGGGAAAAACACTCCACATGGGACTTCTGTGCATCATaGCATCACCAACATACTGCTGCAGTTACCGGCTTC +
Preference number: 3 (lower is better)
Translates to: WEKHSTWDFCAS*HHQHTAAVTGF
Trigger: GAAGCCGGTAACTGCAGCAGTATGTTGGTGATGTCATGATGCACAGAAGTCCCATGTGGAGTGTTTTTCCCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR CCA 72 bp AATCCTTTCTTGGTTATGTGCCTCTGGGATCCCTACTaGACACTGCGAGGGTACGTGGGCTATTTTCACAAT +
Preference number: 3 (lower is better)
Translates to: NPFLVMCLWDPY*TLRGYVGYFHN
Trigger: ATTGTGAAAATAGCCCACGTACCCTCGCAGTGTCCAGTAGGGATCCCAGAGGCACATAACCAAGAAAGGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
3UTR-3UTR CAA 90 bp AGGGGCCAGCACAATTCCAAGAGAGGAGTGAGAACAGCATCAACTCATTATAATAGGAATCCCTTCAGGTaGCTGCTGTGGTTTGCGTTA +
Preference number: 3 (lower is better)
Translates to: RGQHNSKRGVRTASTHYNRNPFR*LLWFAL
Trigger: TAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT...ATTATAATGAGTTGATGCTGTTCTCACTCCTCTCTTGGAATTGTGCTGGCCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
3UTR-3UTR CAA 90 bp AAAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATAAGGAATCCCTTCAGGTaGCTGCTGTGGTTTGCGTTA +
Preference number: 3 (lower is better)
Translates to: KDKLPTTPLPFSLYSNPIRNPFR*LLWFAL
Trigger: TAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT...TATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
3UTR-3UTR CAA 90 bp GAGAGACTTCAGGGTCTATTATTCCGAGAGAAGGGTGTTTTAGTTACTAGCTGTAGGAATCCCTTCAGGTaGCTGCTGTGGTTTGCGTTA +
Preference number: 3 (lower is better)
Translates to: ERLQGLLFREKGVLVTSCRNPFR*LLWFAL
Trigger: TAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT...ACAGCTAGTAACTAAAACACCCTTCTCTCGGAATAATAGACCCTGAAGTCTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
3UTR-3UTR CAA 90 bp TTACCACCAAGAAGCATGACGCTCAGAGCCCAGGCATTAGATATTAAAATACATAGGAATCCCTTCAGGTaGCTGCTGTGGTTTGCGTTA +
Preference number: 3 (lower is better)
Translates to: LPPRSMTLRAQALDIKIHRNPFR*LLWFAL
Trigger: TAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT...ATGTATTTTAATATCTAATGCCTGGGCTCTGAGCGTCATGCTTCTTGGTGGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR CCA 72 bp AAAATATGTATGTTTCTTCAAGATGCTCTGGAGTCATaGAATCTTGTGTACGCTATCTTGCCAGGGCCACGG +
Preference number: 3 (lower is better)
Translates to: KICMFLQDALES*NLVYAILPGPR
Trigger: CCGTGGCCCTGGCAAGATAGCGTACACAAGATTCCATGACTCCAGAGCATCTTGAAGAAACATACATATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 72 bp TGGCATACTTCAGTATTACATTTATTTCATTGGAGGTaGCTCTTGGGCCTGTGCATGGACACCCCTTTAAGA +
Preference number: 3 (lower is better)
Translates to: WHTSVLHLFHWR*LLGLCMDTPLR
Trigger: TCTTAAAGGGGTGTCCATGCACAGGCCCAAGAGTCACCTCCAATGAAATAAATGTAATACTGAAGTATGCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 72 bp AATCCAAACACAGAAAACGCAGACCAAGCCTTCCCTTaGAAGTGTATGACACTCCTTTTCTTTCTGATGGTA +
Preference number: 3 (lower is better)
Translates to: NPNTENADQAFP*KCMTLLFFLMV
Trigger: TACCATCAGAAAGAAAAGGAGTGTCATACACTTTCAAGGGAAGGCTTGGTCTGCGTTTTCTGTGTTTGGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR-3UTR CAA 90 bp CAGCATCAACTCATTATAATGCAGATGATCTTTGCAACGTTCTTTCATTACCTTAGGAATCCCTTCAGGTaGCTGCTGTGGTTTGCGTTA +
Preference number: 3 (lower is better)
Translates to: QHQLIIMQMIFATFFHYLRNPFR*LLWFAL
Trigger: TAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT...AAGGTAATGAAAGAACGTTGCAAAGATCATCTGCATTATAATGAGTTGATGCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
3UTR TCA 72 bp CATCGACCACTGGTAAATGCTCTATTCTATCTGATTTaGCGTATTTTTCCTGCTTACAGGCTTACGATGAAA +
Preference number: 3 (lower is better)
Translates to: HRPLVNALFYLI*RIFPAYRLTMK
Trigger: TTTCATCGTAAGCCTGTAAGCAGGAAAAATACGTCAAATCAGATAGAATAGAGCATTTACCAGTGGTCGATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR GCA 72 bp AGGTTTTTGACTGAAGTGATTCTCGACATTTTAATTTaGCGGTGCTTAGACAATGTAGGTCTTGACATATCT +
Preference number: 3 (lower is better)
Translates to: RFLTEVILDILI*RCLDNVGLDIS
Trigger: AGATATGTCAAGACCTACATTGTCTAAGCACCGGCAAATTAAAATGTCGAGAATCACTTCAGTCAAAAACCT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
3UTR TCA 72 bp TTAGGAAGTTACAAGATATTTATTGTCTCTAATCAATaGAAAGGCAACAAAACCTCCTGGGACCTCAAGTTC +
Preference number: 3 (lower is better)
Translates to: LGSYKIFIVSNQ*KGNKTSWDLKF
Trigger: GAACTTGAGGTCCCAGGAGGTTTTGTTGCCTTTTCATTGATTAGAGACAATAAATATCTTGTAACTTCCTAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
3UTR TCA 72 bp AAAGAAATGGAATATTTAGCTACAACCCGCAGCTTGTaGACTATCTGCTACATTTCCCCTCTTTCAAAATAT +
Preference number: 3 (lower is better)
Translates to: KEMEYLATTRSL*TICYISPLSKY
Trigger: ATATTTTGAAAGAGGGGAAATGTAGCAGATAGTTCACAAGCTGCGGGTTGTAGCTAAATATTCCATTTCTTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
CDS-3UTR GCA 90 bp CTAGCAAGCCTCCCTTTGGAAGGGCCCTCCCCCAGGGTGGTTTGTGGACATGGTGCTTCCAATCTCAGCTaGTGCACAGTTCTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: LASLPLEGPSPRVVCGHGASNLS*CTVLLA
Trigger: AGCCAGGAGAACTGTGCAGCAGCTGAGATTGGAAGC...ACCATGTCCACAAACCACCCTGGGGGAGGGCCCTTCCAAAGGGAGGCTTGCTAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
CDS-3UTR GCA 90 bp AGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGCAAGGGGCGCTTCGGGTCGCTCCGGGCATaGTCCTCACAGTATGACATC +
Preference number: 4 (lower is better)
Translates to: RNPFRLLLWFALRGKGRFGSLRA*SSQYDI
Trigger: GATGTCATACTGTGAGGAGCATGCCCGGAGCGACCC...GAAGCGCCCCTTGCCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CCA 90 bp CTCCTCCCTCTCCGAGATTGTGAGGCTCTCGGTCCCCTCTTCCATTCCAGTCATGCTGCACAGTTCTCCTaGCTTGGGCTATGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: LLPLRDCEALGPLFHSSHAAQFS*LGLCCW
Trigger: CCAACAGCATAGCCCAAGCCAGGAGAACTGTGCAGC...ATGACTGGAATGGAAGAGGGGACCGAGAGCCTCACAATCTCGGAGAGGGAGGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
CDS-3UTR TCA 90 bp ACTAGCAAGCCTCCCTTTGGAAGGGCCCTCCCCCAGGGTGGTTTGTGGACATGGAGGTCTTCTTATCCTTaGACGGGTTTTCTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: TSKPPFGRALPQGGLWTWRSSYP*TGFLRS
Trigger: CGACCTCAGAAAACCCGTTCAAGGATAAGAAGACCT...CCATGTCCACAAACCACCCTGGGGGAGGGCCCTTCCAAAGGGAGGCTTGCTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
CDS-3UTR TCA 90 bp CCCCAATCCAGCAGAGATCAAGAGCCCTGGAGTGGAAGCTGCCTCCTGAGGGTCAGGTCTTCTTATCCTTaGACGGGTTTTCTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: PQSSRDQEPWSGSCLLRVRSSYP*TGFLRS
Trigger: CGACCTCAGAAAACCCGTTCAAGGATAAGAAGACCT...GACCCTCAGGAGGCAGCTTCCACTCCAGGGCTCTTGATCTCTGCTGGATTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
CDS-3UTR GCA 90 bp AGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGCAAGGGGCGCTTCTCCTGGCTTGGGCTATaGTGTTGGTGCTTGCCGTCT +
Preference number: 4 (lower is better)
Translates to: RNPFRLLLWFALRGKGRFSWLGL*CWCLPS
Trigger: AGACGGCAAGCACCAACAGCATAGCCCAAGCCAGGA...GAAGCGCCCCTTGCCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CCA 90 bp AGCCTCCCTTTGGAAGGGCCCTCCCCCAGGGTGGTTTGTGGACATGGTAGTGTTACAGTTCTCCTGGCTTaGGCTATGCTGTTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: SLPLEGPSPRVVCGHGSVTVLLA*AMLLVL
Trigger: AAGCACCAACAGCATAGCCCAAGCCAGGAGAACTGT...AACACTACCATGTCCACAAACCACCCTGGGGGAGGGCCCTTCCAAAGGGAGGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
CDS-3UTR CCA 90 bp AGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGCAAGGGGCGCTTCGCTGCACAGTTCTCCTaGCTTGGGCTATGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: RNPFRLLLWFALRGKGRFAAQFS*LGLCCW
Trigger: CCAACAGCATAGCCCAAGCCAGGAGAACTGTGCAGC...GAAGCGCCCCTTGCCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp AGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGCAAGGGGCGCTTCGCTTCCAATCTCAGCTaGTGCACAGTTCTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: RNPFRLLLWFALRGKGRFASNLS*CTVLLA
Trigger: AGCCAGGAGAACTGTGCAGCAGCTGAGATTGGAAGC...GAAGCGCCCCTTGCCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp CCAGGTAAGCTGAAGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGGGGTCGCTCCGGGCATaGTCCTCACAGTATGACATC +
Preference number: 4 (lower is better)
Translates to: PGKLKESLQVAAVVCVKRGSLRA*SSQYDI
Trigger: GATGTCATACTGTGAGGAGCATGCCCGGAGCGACCC...CCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCTTCAGCTTACCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CCA 90 bp CTCCTCCCTCTCCGAGATTGTGAGGCTCTCGGTCCCCTCTTCCATTCCAGTCATACAGTTCTCCTGGCTTaGGCTATGCTGTTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: LLPLRDCEALGPLFHSSHTVLLA*AMLLVL
Trigger: AAGCACCAACAGCATAGCCCAAGCCAGGAGAACTGT...ATGACTGGAATGGAAGAGGGGACCGAGAGCCTCACAATCTCGGAGAGGGAGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
CDS-3UTR CCA 90 bp AGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGCAAGGGGCGCTTCACAGTTCTCCTGGCTTaGGCTATGCTGTTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: RNPFRLLLWFALRGKGRFTVLLA*AMLLVL
Trigger: AAGCACCAACAGCATAGCCCAAGCCAGGAGAACTGT...GAAGCGCCCCTTGCCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR TCA 90 bp AGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGCAAGGGGCGCTTCAGGTCTTCTTATCCTTaGACGGGTTTTCTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: RNPFRLLLWFALRGKGRFRSSYP*TGFLRS
Trigger: CGACCTCAGAAAACCCGTTCAAGGATAAGAAGACCT...GAAGCGCCCCTTGCCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp CCAGGTAAGCTGAAGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGGCTTCCAATCTCAGCTaGTGCACAGTTCTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: PGKLKESLQVAAVVCVKRASNLS*CTVLLA
Trigger: AGCCAGGAGAACTGTGCAGCAGCTGAGATTGGAAGC...CCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCTTCAGCTTACCTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CCA 90 bp TGGTTACCAGGTAAGCTGAAGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTGCTGCACAGTTCTCCTaGCTTGGGCTATGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: WLPGKLKESLQVAAVVCVAAQFS*LGLCCW
Trigger: CCAACAGCATAGCCCAAGCCAGGAGAACTGTGCAGC...AACGCAAACCACAGCAGCAACCTGAAGGGATTCCTTCAGCTTACCTGGTAACCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR TCA 90 bp CCAGGTAAGCTGAAGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGAGGTCTTCTTATCCTTaGACGGGTTTTCTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: PGKLKESLQVAAVVCVKRRSSYP*TGFLRS
Trigger: CGACCTCAGAAAACCCGTTCAAGGATAAGAAGACCT...CCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCTTCAGCTTACCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp AGGGGCCAGCACAATTCCAAGAGAGGAGTGAGAACAGCATCAACTCATTATAATGGGTCGCTCCGGGCATaGTCCTCACAGTATGACATC +
Preference number: 4 (lower is better)
Translates to: RGQHNSKRGVRTASTHYNGSLRA*SSQYDI
Trigger: GATGTCATACTGTGAGGAGCATGCCCGGAGCGACCC...ATTATAATGAGTTGATGCTGTTCTCACTCCTCTCTTGGAATTGTGCTGGCCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS-3UTR CCA 90 bp AGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGCAAGGGGCGCTTCCCTTTATTCTTTCGATaGAGGCTTCCAATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: RNPFRLLLWFALRGKGRFPLFFR*RLPISA
Trigger: AGCTGAGATTGGAAGCCTCCATCGAAAGAATAAAGG...GAAGCGCCCCTTGCCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp GAGAGACTTCAGGGTCTATTATTCCGAGAGAAGGGTGTTTTAGTTACTAGCTGTGGGTCGCTCCGGGCATaGTCCTCACAGTATGACATC +
Preference number: 4 (lower is better)
Translates to: ERLQGLLFREKGVLVTSCGSLRA*SSQYDI
Trigger: GATGTCATACTGTGAGGAGCATGCCCGGAGCGACCC...ACAGCTAGTAACTAAAACACCCTTCTCTCGGAATAATAGACCCTGAAGTCTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp GGACAACTTGAAAAAGAGAGACTTCAGGGTCTATTATTCCGAGAGAAGGGTGTTGGGTCGCTCCGGGCATaGTCCTCACAGTATGACATC +
Preference number: 4 (lower is better)
Translates to: GQLEKERLQGLLFREKGVGSLRA*SSQYDI
Trigger: GATGTCATACTGTGAGGAGCATGCCCGGAGCGACCC...AACACCCTTCTCTCGGAATAATAGACCCTGAAGTCTCTCTTTTTCAAGTTGTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CCA 90 bp TGGGCTATTTTCACAATTGGAGTAAAAGTGAGGACCCAACTGCTAGACGCTGAAGCTGCACAGTTCTCCTaGCTTGGGCTATGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: WAIFTIGVKVRTQLLDAEAAQFS*LGLCCW
Trigger: CCAACAGCATAGCCCAAGCCAGGAGAACTGTGCAGC...TTCAGCGTCTAGCAGTTGGGTCCTCACTTTTACTCCAATTGTGAAAATAGCCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
CDS-3UTR GCA 90 bp AAAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATATCCTGGCTTGGGCTATaGTGTTGGTGCTTGCCGTCT +
Preference number: 4 (lower is better)
Translates to: KDKLPTTPLPFSLYSNPISWLGL*CWCLPS
Trigger: AGACGGCAAGCACCAACAGCATAGCCCAAGCCAGGA...TATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp AAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATATTCCTGGCTTGGGCTATaGTGTTGGTGCTTGCCGTCT +
Preference number: 4 (lower is better)
Translates to: KTSFPQLPCHFPYTVTQYSWLGL*CWCLPS
Trigger: AGACGGCAAGCACCAACAGCATAGCCCAAGCCAGGA...ATATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp GAAGTGATTCTCGACATTTTAATTTGCCGGTGCTTAGACAATGTAGGTCTTGACGGGTCGCTCCGGGCATaGTCCTCACAGTATGACATC +
Preference number: 4 (lower is better)
Translates to: EVILDILICRCLDNVGLDGSLRA*SSQYDI
Trigger: GATGTCATACTGTGAGGAGCATGCCCGGAGCGACCC...GTCAAGACCTACATTGTCTAAGCACCGGCAAATTAAAATGTCGAGAATCACTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS-3UTR CCA 90 bp GAGAGACTTCAGGGTCTATTATTCCGAGAGAAGGGTGTTTTAGTTACTAGCTGTGCTGCACAGTTCTCCTaGCTTGGGCTATGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: ERLQGLLFREKGVLVTSCAAQFS*LGLCCW
Trigger: CCAACAGCATAGCCCAAGCCAGGAGAACTGTGCAGC...ACAGCTAGTAACTAAAACACCCTTCTCTCGGAATAATAGACCCTGAAGTCTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp GAAGTGATTCTCGACATTTTAATTTGCCGGTGCTTAGACAATGTAGGTCTTGACTCCTGGCTTGGGCTATaGTGTTGGTGCTTGCCGTCT +
Preference number: 4 (lower is better)
Translates to: EVILDILICRCLDNVGLDSWLGL*CWCLPS
Trigger: AGACGGCAAGCACCAACAGCATAGCCCAAGCCAGGA...GTCAAGACCTACATTGTCTAAGCACCGGCAAATTAAAATGTCGAGAATCACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS-3UTR GCA 90 bp AAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATATGCTTCCAATCTCAGCTaGTGCACAGTTCTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: KTSFPQLPCHFPYTVTQYASNLS*CTVLLA
Trigger: AGCCAGGAGAACTGTGCAGCAGCTGAGATTGGAAGC...ATATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CCA 90 bp GAAGTGATTCTCGACATTTTAATTTGCCGGTGCTTAGACAATGTAGGTCTTGACGCTGCACAGTTCTCCTaGCTTGGGCTATGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: EVILDILICRCLDNVGLDAAQFS*LGLCCW
Trigger: CCAACAGCATAGCCCAAGCCAGGAGAACTGTGCAGC...GTCAAGACCTACATTGTCTAAGCACCGGCAAATTAAAATGTCGAGAATCACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS-3UTR CCA 90 bp GGAAGCCAAGTTGTCAGTGTGGGAAAAACACTCCACATGGGACTTCTGTGCATCCCTTTATTCTTTCGATaGAGGCTTCCAATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: GSQVVSVGKTLHMGLLCIPLFFR*RLPISA
Trigger: AGCTGAGATTGGAAGCCTCCATCGAAAGAATAAAGG...GATGCACAGAAGTCCCATGTGGAGTGTTTTTCCCACACTGACAACTTGGCTTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043148.13
CDS-3UTR CCA 90 bp TGGTTACCAGGTAAGCTGAAGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTCCTTTATTCTTTCGATaGAGGCTTCCAATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: WLPGKLKESLQVAAVVCVPLFFR*RLPISA
Trigger: AGCTGAGATTGGAAGCCTCCATCGAAAGAATAAAGG...AACGCAAACCACAGCAGCAACCTGAAGGGATTCCTTCAGCTTACCTGGTAACCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR TCA 90 bp GAGAGACTTCAGGGTCTATTATTCCGAGAGAAGGGTGTTTTAGTTACTAGCTGTAGGTCTTCTTATCCTTaGACGGGTTTTCTGAGGTCG +
Preference number: 4 (lower is better)
Translates to: ERLQGLLFREKGVLVTSCRSSYP*TGFLRS
Trigger: CGACCTCAGAAAACCCGTTCAAGGATAAGAAGACCT...ACAGCTAGTAACTAAAACACCCTTCTCTCGGAATAATAGACCCTGAAGTCTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp CAGCATCAACTCATTATAATGCAGATGATCTTTGCAACGTTCTTTCATTACCTTGGGTCGCTCCGGGCATaGTCCTCACAGTATGACATC +
Preference number: 4 (lower is better)
Translates to: QHQLIIMQMIFATFFHYLGSLRA*SSQYDI
Trigger: GATGTCATACTGTGAGGAGCATGCCCGGAGCGACCC...AAGGTAATGAAAGAACGTTGCAAAGATCATCTGCATTATAATGAGTTGATGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS-3UTR CCA 90 bp GAAGTGATTCTCGACATTTTAATTTGCCGGTGCTTAGACAATGTAGGTCTTGACACAGTTCTCCTGGCTTaGGCTATGCTGTTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: EVILDILICRCLDNVGLDTVLLA*AMLLVL
Trigger: AAGCACCAACAGCATAGCCCAAGCCAGGAGAACTGT...GTCAAGACCTACATTGTCTAAGCACCGGCAAATTAAAATGTCGAGAATCACTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS-3UTR TCA 90 bp AAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATATGAGACCTTAACCAAGTaGTCAGAGGAGGACATCTTT +
Preference number: 4 (lower is better)
Translates to: KTSFPQLPCHFPYTVTQYETLTK*SEEDIF
Trigger: AAAGATGTCCTCCTCTGATCACTTGGTTAAGGTCTC...ATATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp CAGCATCAACTCATTATAATGCAGATGATCTTTGCAACGTTCTTTCATTACCTTTCCTGGCTTGGGCTATaGTGTTGGTGCTTGCCGTCT +
Preference number: 4 (lower is better)
Translates to: QHQLIIMQMIFATFFHYLSWLGL*CWCLPS
Trigger: AGACGGCAAGCACCAACAGCATAGCCCAAGCCAGGA...AAGGTAATGAAAGAACGTTGCAAAGATCATCTGCATTATAATGAGTTGATGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS-3UTR CCA 90 bp CAAAAATTTCACGGAAATTTACCTACACAGAGTCAGGATAATGATGTAACTCTGGCTGCACAGTTCTCCTaGCTTGGGCTATGCTGTTGG +
Preference number: 4 (lower is better)
Translates to: QKFHGNLPTQSQDNDVTLAAQFS*LGLCCW
Trigger: CCAACAGCATAGCCCAAGCCAGGAGAACTGTGCAGC...CAGAGTTACATCATTATCCTGACTCTGTGTAGGTAAATTTCCGTGAAATTTTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS-3UTR CCA 90 bp AGGGGCCAGCACAATTCCAAGAGAGGAGTGAGAACAGCATCAACTCATTATAATCCTTTATTCTTTCGATaGAGGCTTCCAATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: RGQHNSKRGVRTASTHYNPLFFR*RLPISA
Trigger: AGCTGAGATTGGAAGCCTCCATCGAAAGAATAAAGG...ATTATAATGAGTTGATGCTGTTCTCACTCCTCTCTTGGAATTGTGCTGGCCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS-3UTR GCA 90 bp CAGCATCAACTCATTATAATGCAGATGATCTTTGCAACGTTCTTTCATTACCTTGCTTCCAATCTCAGCTaGTGCACAGTTCTCCTGGCT +
Preference number: 4 (lower is better)
Translates to: QHQLIIMQMIFATFFHYLASNLS*CTVLLA
Trigger: AGCCAGGAGAACTGTGCAGCAGCTGAGATTGGAAGC...AAGGTAATGAAAGAACGTTGCAAAGATCATCTGCATTATAATGAGTTGATGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS-3UTR CCA 90 bp GGACAACTTGAAAAAGAGAGACTTCAGGGTCTATTATTCCGAGAGAAGGGTGTTCCTTTATTCTTTCGATaGAGGCTTCCAATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: GQLEKERLQGLLFREKGVPLFFR*RLPISA
Trigger: AGCTGAGATTGGAAGCCTCCATCGAAAGAATAAAGG...AACACCCTTCTCTCGGAATAATAGACCCTGAAGTCTCTCTTTTTCAAGTTGTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CCA 90 bp AAAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATACCTTTATTCTTTCGATaGAGGCTTCCAATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: KDKLPTTPLPFSLYSNPIPLFFR*RLPISA
Trigger: AGCTGAGATTGGAAGCCTCCATCGAAAGAATAAAGG...TATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CCA 90 bp AAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATATCCTTTATTCTTTCGATaGAGGCTTCCAATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: KTSFPQLPCHFPYTVTQYPLFFR*RLPISA
Trigger: AGCTGAGATTGGAAGCCTCCATCGAAAGAATAAAGG...ATATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR GCA 90 bp GGACAACTTGAAAAAGAGAGACTTCAGGGTCTATTATTCCGAGAGAAGGGTGTTAGAGGAGGACATCTTTaGCTTTATTCTTTCGATGGA +
Preference number: 4 (lower is better)
Translates to: GQLEKERLQGLLFREKGVRGGHL*LYSFDG
Trigger: TCCATCGAAAGAATAAAGGCAAAGATGTCCTCCTCT...AACACCCTTCTCTCGGAATAATAGACCCTGAAGTCTCTCTTTTTCAAGTTGTCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000204511.3
CDS-3UTR CCA 90 bp CAAAAATTTCACGGAAATTTACCTACACAGAGTCAGGATAATGATGTAACTCTGACAGTTCTCCTGGCTTaGGCTATGCTGTTGGTGCTT +
Preference number: 4 (lower is better)
Translates to: QKFHGNLPTQSQDNDVTLTVLLA*AMLLVL
Trigger: AAGCACCAACAGCATAGCCCAAGCCAGGAGAACTGT...CAGAGTTACATCATTATCCTGACTCTGTGTAGGTAAATTTCCGTGAAATTTTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS-3UTR CAA 90 bp CCCCCAATCCAGCAGAGATCAAGAGCCCTGGAGTGGAAGCTGCCTCCTGAGGGTCAGGTCTTCTTATCCTaGAACGGGTTTTCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: PPIQQRSRALEWKLPPEGQVFLS*NGFSEV
Trigger: GACCTCAGAAAACCCGTTCAAGGATAAGAAGACCTG...ACCCTCAGGAGGCAGCTTCCACTCCAGGGCTCTTGATCTCTGCTGGATTGGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000043148.13
ENSMUST00000114225.8
CDS-3UTR CAA 90 bp CCAGGTAAGCTGAAGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGCACAGTTCTCCTGGCTaGGGCTATGCTGTTGGTGCT +
Preference number: 5 (lower is better)
Translates to: PGKLKESLQVAAVVCVKRHSSPG*GYAVGA
Trigger: AGCACCAACAGCATAGCCCAAGCCAGGAGAACTGTG...CCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCTTCAGCTTACCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CAA 90 bp AGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGCAAGGGGCGCTTCCAGGTCTTCTTATCCTaGAACGGGTTTTCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: RNPFRLLLWFALRGKGRFQVFLS*NGFSEV
Trigger: GACCTCAGAAAACCCGTTCAAGGATAAGAAGACCTG...GAAGCGCCCCTTGCCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CAA 90 bp CCAGGTAAGCTGAAGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTAAGAGGCAGGTCTTCTTATCCTaGAACGGGTTTTCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: PGKLKESLQVAAVVCVKRQVFLS*NGFSEV
Trigger: GACCTCAGAAAACCCGTTCAAGGATAAGAAGACCTG...CCTCTTAACGCAAACCACAGCAGCAACCTGAAGGGATTCCTTCAGCTTACCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CAA 90 bp TGGTTACCAGGTAAGCTGAAGGAATCCCTTCAGGTTGCTGCTGTGGTTTGCGTTCAGGTCTTCTTATCCTaGAACGGGTTTTCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: WLPGKLKESLQVAAVVCVQVFLS*NGFSEV
Trigger: GACCTCAGAAAACCCGTTCAAGGATAAGAAGACCTG...AACGCAAACCACAGCAGCAACCTGAAGGGATTCCTTCAGCTTACCTGGTAACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CAA 90 bp AAAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATACACAGTTCTCCTGGCTaGGGCTATGCTGTTGGTGCT +
Preference number: 5 (lower is better)
Translates to: KDKLPTTPLPFSLYSNPIHSSPG*GYAVGA
Trigger: AGCACCAACAGCATAGCCCAAGCCAGGAGAACTGTG...TATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CAA 90 bp AAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATATCACAGTTCTCCTGGCTaGGGCTATGCTGTTGGTGCT +
Preference number: 5 (lower is better)
Translates to: KTSFPQLPCHFPYTVTQYHSSPG*GYAVGA
Trigger: AGCACCAACAGCATAGCCCAAGCCAGGAGAACTGTG...ATATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CAA 90 bp GAAGTGATTCTCGACATTTTAATTTGCCGGTGCTTAGACAATGTAGGTCTTGACCACAGTTCTCCTGGCTaGGGCTATGCTGTTGGTGCT +
Preference number: 5 (lower is better)
Translates to: EVILDILICRCLDNVGLDHSSPG*GYAVGA
Trigger: AGCACCAACAGCATAGCCCAAGCCAGGAGAACTGTG...GTCAAGACCTACATTGTCTAAGCACCGGCAAATTAAAATGTCGAGAATCACTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS TCA 90 bp CAGTATGACATCAGGTCTGCTGATGCTTTTGAGACCTTAACCAAGTaGTCAGAGGAGGACATCTTTGCCTTTATTCTTTCGATGGAGGCT +
Preference number: 5 (lower is better)
Translates to: QYDIRSADAFETLTK*SEEDIFAFILSMEA
Trigger: AGCCTCCATCGAAAGAATAAAGGCAAAGATGTCCTCCTCTGATCACTTGGTTAAGGTCTCAAAAGCATCAGCAGACCTGATGTCATACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204511.3
CDS-3UTR CAA 90 bp AAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATATCAGGTCTTCTTATCCTaGAACGGGTTTTCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: KTSFPQLPCHFPYTVTQYQVFLS*NGFSEV
Trigger: GACCTCAGAAAACCCGTTCAAGGATAAGAAGACCTG...ATATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CAA 90 bp GGACAACTTGAAAAAGAGAGACTTCAGGGTCTATTATTCCGAGAGAAGGGTGTTCAGGTCTTCTTATCCTaGAACGGGTTTTCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: GQLEKERLQGLLFREKGVQVFLS*NGFSEV
Trigger: GACCTCAGAAAACCCGTTCAAGGATAAGAAGACCTG...AACACCCTTCTCTCGGAATAATAGACCCTGAAGTCTCTCTTTTTCAAGTTGTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
CDS-3UTR CAA 90 bp AAAGACAAGCTTCCCACAACTCCCCTGCCATTTTCCTTATACAGTAACCCAATAGGTCTGCTGATGCTTTaGAGACCTTTATTCTTTCGA +
Preference number: 5 (lower is better)
Translates to: KDKLPTTPLPFSLYSNPIGLLML*RPLFFR
Trigger: TCGAAAGAATAAAGGTCTCAAAAGCATCAGCAGACC...TATTGGGTTACTGTATAAGGAAAATGGCAGGGGAGTTGTGGGAAGCTTGTCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
CDS-3UTR CAA 90 bp CAAAAATTTCACGGAAATTTACCTACACAGAGTCAGGATAATGATGTAACTCTGCAGGTCTTCTTATCCTaGAACGGGTTTTCTGAGGTC +
Preference number: 5 (lower is better)
Translates to: QKFHGNLPTQSQDNDVTLQVFLS*NGFSEV
Trigger: GACCTCAGAAAACCCGTTCAAGGATAAGAAGACCTG...CAGAGTTACATCATTATCCTGACTCTGTGTAGGTAAATTTCCGTGAAATTTTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
CDS CCA 72 bp GCTTCCAATCTCAGCTGCTGCACAGTTCTCCTGGCTTaGGCTATGCTGTTGGTGCTTGCCGTCTTGCTGGAC +
Preference number: 6 (lower is better)
Translates to: ASNLSCCTVLLA*AMLLVLAVLLD
Trigger: GTCCAGCAAGACGGCAAGCACCAACAGCATAGCCCAAGCCAGGAGAACTGTGCAGCAGCTGAGATTGGAAGC
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
ENSMUST00000204862.2
CDS CCA 72 bp TGGAGGCTTCCAATCTCAGCTGCTGCACAGTTCTCCTaGCTTGGGCTATGCTGTTGGTGCTTGCCGTCTTGC +
Preference number: 6 (lower is better)
Translates to: WRLPISAAAQFS*LGLCCWCLPSC
Trigger: GCAAGACGGCAAGCACCAACAGCATAGCCCAAGCCAGGAGAACTGTGCAGCAGCTGAGATTGGAAGCCTCCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
ENSMUST00000204862.2
CDS CAA 72 bp GGCTTCCAATCTCAGCTGCTGCACAGTTCTCCTGGCTaGGGCTATGCTGTTGGTGCTTGCCGTCTTGCTGGA +
Preference number: 6 (lower is better)
Translates to: GFQSQLLHSSPG*GYAVGACRLAG
Trigger: TCCAGCAAGACGGCAAGCACCAACAGCATAGCCCAAGCCAGGAGAACTGTGCAGCAGCTGAGATTGGAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204511.3
ENSMUST00000204862.2
CDS CCA 72 bp GGTCTGCTGATGCTTTTGAGACCTTTATTCTTTCGATaGAGGCTTCCAATCTCAGCTGCTGCACAGTTCTCC +
Preference number: 6 (lower is better)
Translates to: GLLMLLRPLFFR*RLPISAAAQFS
Trigger: GGAGAACTGTGCAGCAGCTGAGATTGGAAGCCTCCATCGAAAGAATAAAGGTCTCAAAAGCATCAGCAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000043148.13
ENSMUST00000114222.4
ENSMUST00000114224.8
ENSMUST00000114225.8
ENSMUST00000114226.8
ENSMUST00000114227.8
ENSMUST00000114228.8
ENSMUST00000204862.2
CDS TCA 72 bp ATCAGGTCTGCTGATGCTTTTGAGACCTTAACCAAGTaGTCAGAGGAGGACATCTTTGCCTTTATTCTTTCG +
Preference number: 6 (lower is better)
Translates to: IRSADAFETLTK*SEEDIFAFILS
Trigger: CGAAAGAATAAAGGCAAAGATGTCCTCCTCTGATCACTTGGTTAAGGTCTCAAAAGCATCAGCAGACCTGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000204511.3