Pregenerated sensors for GNG10 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038607Ensembl transcript IDs: ENSMUST00000041160.13
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GAGAGAATGACTTGGCTCTTGAAAGCTGTTTTCTTGGGACTTGGCTaGAGTCATCCATCACCATGTGCACACAAGGCTTCCTCAGCGAGC | + |
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Preference number: 1 (lower is better) Translates to: ERMTWLLKAVFLGLG*SHPSPCAHKASSAS Trigger: GCTCGCTGAGGAAGCCTTGTGTGCACATGGTGATGGATGACTGCAGCCAAGTCCCAAGAAAACAGCTTTCAAGAGCCAAGTCATTCTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR CCA 90 bp | GACAGAGAGAATGACTTGGCTCTTGAAAGCTGTTTTCTTGGGACTTaGCTGCAGTCATCCATCACCATGTGCACACAAGGCTTCCTCAGC | + |
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Preference number: 1 (lower is better) Translates to: DRENDLALESCFLGT*LQSSITMCTQGFLS Trigger: GCTGAGGAAGCCTTGTGTGCACATGGTGATGGATGACTGCAGCCAAGTCCCAAGAAAACAGCTTTCAAGAGCCAAGTCATTCTCTCTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR GCA 90 bp | TTGCCAAGGAGCAGCGCCCAACCTTACTGTTCAAGTCAGACCATTTaGTCATTGGGAAATGAAAAAGCTTTCCTTTACAAAATCAAGGTA | + |
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Preference number: 1 (lower is better) Translates to: LPRSSAQPYCSSQTI*SLGNEKAFLYKIKV Trigger: TACCTTGATTTTGTAAAGGAAAGCTTTTTCATTTCCCAATGAGCAAATGGTCTGACTTGAACAGTAAGGTTGGGCGCTGCTCCTTGGCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR CCA 90 bp | GGAGCAGCGCCCAACCTTACTGTTCAAGTCAGACCATTTGCTCATTaGGAAATGAAAAAGCTTTCCTTTACAAAATCAAGGTATCAATTA | + |
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Preference number: 1 (lower is better) Translates to: GAAPNLTVQVRPFAH*EMKKLSFTKSRYQL Trigger: TAATTGATACCTTGATTTTGTAAAGGAAAGCTTTTTCATTTCCCAATGAGCAAATGGTCTGACTTGAACAGTAAGGTTGGGCGCTGCTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR-3UTR CCA 90 bp | GGGCTACACAGGCTCCATGGTGAAAGAGGCGCATCCAGCAAGTTTGGTAGTGAGTGTTTTCTTGGGACTTaGCTGCAGTCATCCATCACC | + |
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Preference number: 2 (lower is better) Translates to: GLHRLHGERGASSKFGSECFLGT*LQSSIT Trigger: GGTGATGGATGACTGCAGCCAAGTCCCAAGAAAACA...CTCACTACCAAACTTGCTGGATGCGCCTCTTTCACCATGGAGCCTGTGTAGCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR CAA 90 bp | CCTAGGACCAGGCCATTTTCTAGGACAGAGAGAATGACTTGGCTCTaGAAAGCTGTTTTCTTGGGACTTGGCTGCAGTCATCCATCACCA | + |
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Preference number: 2 (lower is better) Translates to: PRTRPFSRTERMTWL*KAVFLGLGCSHPSP Trigger: TGGTGATGGATGACTGCAGCCAAGTCCCAAGAAAACAGCTTTCAAGAGCCAAGTCATTCTCTCTGTCCTAGAAAATGGCCTGGTCCTAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR CAA 90 bp | TTTTCTAGGACAGAGAGAATGACTTGGCTCTTGAAAGCTGTTTTCTaGGGACTTGGCTGCAGTCATCCATCACCATGTGCACACAAGGCT | + |
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Preference number: 2 (lower is better) Translates to: FSRTERMTWLLKAVF*GLGCSHPSPCAHKA Trigger: AGCCTTGTGTGCACATGGTGATGGATGACTGCAGCCAAGTCCCAAGAAAACAGCTTTCAAGAGCCAAGTCATTCTCTCTGTCCTAGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR-3UTR CCA 90 bp | TCACACAGGATGGGCAACCTAACAATACATCAATCTTTCCATTTGCCAAGGAGCAGACCATTTGCTCATTaGGAAATGAAAAAGCTTTCC | + |
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Preference number: 2 (lower is better) Translates to: SHRMGNLTIHQSFHLPRSRPFAH*EMKKLS Trigger: GGAAAGCTTTTTCATTTCCCAATGAGCAAATGGTCT...GCTCCTTGGCAAATGGAAAGATTGATGTATTGTTAGGTTGCCCATCCTGTGTGA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR-3UTR GCA 90 bp | AGTCAGACCATTTGCTCATTGGGAAATGAAAAAGCTTTCCTTTACAAAATCAAGCCAGTAAATAAAACATaGCTCTATCCCACACAGGGC | + |
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Preference number: 2 (lower is better) Translates to: SQTICSLGNEKAFLYKIKPVNKT*LYPTQG Trigger: GCCCTGTGTGGGATAGAGGCATGTTTTATTTACTGG...CTTGATTTTGTAAAGGAAAGCTTTTTCATTTCCCAATGAGCAAATGGTCTGACT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR-3UTR GCA 90 bp | CCTTACTGTTCAAGTCAGACCATTTGCTCATTGGGAAATGAAAAAGCTTTCCTTCTCAGTTTTTGGAAATaGAACCTTTCTGTCCTGAAA | + |
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Preference number: 2 (lower is better) Translates to: PYCSSQTICSLGNEKAFLLSFWK*NLSVLK Trigger: TTTCAGGACAGAAAGGTTGCATTTCCAAAAACTGAG...AAGGAAAGCTTTTTCATTTCCCAATGAGCAAATGGTCTGACTTGAACAGTAAGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR-3UTR CCA 90 bp | TTACAAATACTCAGTTTTTGGAAATGCAACCTTTCTGTCCTGAAATGCAAAACCACAGAGAGAATGACTTaGCTCTTGAAAGCTGTTTTC | + |
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Preference number: 2 (lower is better) Translates to: LQILSFWKCNLSVLKCKTTERMT*LLKAVF Trigger: GAAAACAGCTTTCAAGAGCCAAGTCATTCTCTCTGT...GGTTTTGCATTTCAGGACAGAAAGGTTGCATTTCCAAAAACTGAGTATTTGTAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR CCA 72 bp | AATGACTTGGCTCTTGAAAGCTGTTTTCTTGGGACTTaGCTGCAGTCATCCATCACCATGTGCACACAAGGC | + |
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Preference number: 3 (lower is better) Translates to: NDLALESCFLGT*LQSSITMCTQG Trigger: GCCTTGTGTGCACATGGTGATGGATGACTGCAGCCAAGTCCCAAGAAAACAGCTTTCAAGAGCCAAGTCATT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR CCA 72 bp | AGGACCAGGCCATTTTCTAGGACAGAGAGAATGACTTaGCTCTTGAAAGCTGTTTTCTTGGGACTTGGCTGC | + |
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Preference number: 3 (lower is better) Translates to: RTRPFSRTERMT*LLKAVFLGLGC Trigger: GCAGCCAAGTCCCAAGAAAACAGCTTTCAAGAGCCAAGTCATTCTCTCTGTCCTAGAAAATGGCCTGGTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR-3UTR CAA 90 bp | TCACACAGGATGGGCAACCTAACAATACATCAATCTTTCCATTTGCCAAGGAGCGCGCATCCAGCAAGTTaGGTAGTGAGGTTAGAAGGA | + |
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Preference number: 3 (lower is better) Translates to: SHRMGNLTIHQSFHLPRSAHPAS*VVRLEG Trigger: TCCTTCTAACCTCACTACCAAACTTGCTGGATGCGC...GCTCCTTGGCAAATGGAAAGATTGATGTATTGTTAGGTTGCCCATCCTGTGTGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR-3UTR CAA 90 bp | CCTAACAATACATCAATCTTTCCATTTGCCAAGGAGCAGCGCCCAACCTTACTGTTGAAAGCTGTTTTCTaGGGACTTGGCTGCAGTCAT | + |
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Preference number: 3 (lower is better) Translates to: PNNTSIFPFAKEQRPTLLLKAVF*GLGCSH Trigger: ATGACTGCAGCCAAGTCCCAAGAAAACAGCTTTCAA...CAGTAAGGTTGGGCGCTGCTCCTTGGCAAATGGAAAGATTGATGTATTGTTAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR GCA 72 bp | AGCAGCGCCCAACCTTACTGTTCAAGTCAGACCATTTaGTCATTGGGAAATGAAAAAGCTTTCCTTTACAAA | + |
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Preference number: 3 (lower is better) Translates to: SSAQPYCSSQTI*SLGNEKAFLYK Trigger: TTTGTAAAGGAAAGCTTTTTCATTTCCCAATGAGCAAATGGTCTGACTTGAACAGTAAGGTTGGGCGCTGCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR CCA 72 bp | CCCAACCTTACTGTTCAAGTCAGACCATTTGCTCATTaGGAAATGAAAAAGCTTTCCTTTACAAAATCAAGG | + |
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Preference number: 3 (lower is better) Translates to: PNLTVQVRPFAH*EMKKLSFTKSR Trigger: CCTTGATTTTGTAAAGGAAAGCTTTTTCATTTCCCAATGAGCAAATGGTCTGACTTGAACAGTAAGGTTGGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| 3UTR CAA 72 bp | ACAGAGAGAATGACTTGGCTCTTGAAAGCTGTTTTCTaGGGACTTGGCTGCAGTCATCCATCACCATGTGCA | + |
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Preference number: 4 (lower is better) Translates to: TERMTWLLKAVF*GLGCSHPSPCA Trigger: TGCACATGGTGATGGATGACTGCAGCCAAGTCCCAAGAAAACAGCTTTCAAGAGCCAAGTCATTCTCTCTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| CDS-3UTR GCA 90 bp | TTACAAATACTCAGTTTTTGGAAATGCAACCTTTCTGTCCTGAAATGCAAAACCCAGGGCGTCCTTGCATaGATTCTGTATGCAGTACTG | + |
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Preference number: 4 (lower is better) Translates to: LQILSFWKCNLSVLKCKTQGVLA*ILYAVL Trigger: CAGTACTGCATACAGAATGCATGCAAGGACGCCCTG...GGTTTTGCATTTCAGGACAGAAAGGTTGCATTTCCAAAAACTGAGTATTTGTAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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| CDS GCA 72 bp | TGCTTCCAGCCGGAACACCGAGCAGCAGGGCGTCCTTaGATGCATTCTGTATGCAGTACTGCTGAAGCTCTG | + |
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Preference number: 6 (lower is better) Translates to: CFQPEHRAAGRP*MHSVCSTAEAL Trigger: CAGAGCTTCAGCAGTACTGCATACAGAATGCATGCAAGGACGCCCTGCTGCTCGGTGTTCCGGCTGGAAGCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041160.13 |
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