Pregenerated sensors for GNB3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023439Ensembl transcript IDs: ENSMUST00000024206.6
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGAAGGAAGCCAGGAGACTAGGAGCCACATCCATAGTCATGGGCTaGGCACTCTGGCCATTCCCCATCTGGACAAAGGCTACTGGTAAC | + |
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Preference number: 1 (lower is better) Translates to: GKEARRLGATSIVMG*ALWPFPIWTKATGN Trigger: GTTACCAGTAGCCTTTGTCCAGATGGGGAATGGCCAGAGTGCTCAGCCCATGACTATGGATGTGGCTCCTAGTCTCCTGGCTTCCTTCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| 3UTR-3UTR TCA 90 bp | AGAACAAAAGGGCAGAAAAGGAGAAAGCGGCGGGAAGGAAGCCAGGAGACTAGGTCCATAGTCATGGGCTaGGCACTCTGGCCATTCCCC | + |
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Preference number: 2 (lower is better) Translates to: RTKGQKRRKRREGSQETRSIVMG*ALWPFP Trigger: GGGGAATGGCCAGAGTGCTCAGCCCATGACTATGGA...CCTAGTCTCCTGGCTTCCTTCCCGCCGCTTTCTCCTTTTCTGCCCTTTTGTTCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| 3UTR TCA 72 bp | CTGACCCTAAGGAGACGGGGCATAGGAGGAGCCTGCTaGGAACCTTCGTGGCTTCCCACCTCTTCCTCTAGC | + |
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Preference number: 3 (lower is better) Translates to: LTLRRRGIGGAC*EPSWLPTSSSS Trigger: GCTAGAGGAAGAGGTGGGAAGCCACGAAGGTTCTCAGCAGGCTCCTCCTATGCCCCGTCTCCTTAGGGTCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| 3UTR TCA 72 bp | GCCAGGAGACTAGGAGCCACATCCATAGTCATGGGCTaGGCACTCTGGCCATTCCCCATCTGGACAAAGGCT | + |
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Preference number: 3 (lower is better) Translates to: ARRLGATSIVMG*ALWPFPIWTKA Trigger: AGCCTTTGTCCAGATGGGGAATGGCCAGAGTGCTCAGCCCATGACTATGGATGTGGCTCCTAGTCTCCTGGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR CCA 90 bp | GGAAGCCAGGAGACTAGGAGCCACATCCATAGTCATGGGCTGAGCACTCTGGCCCTCCGTGTCCGCATCTaGACTCGGCCCACCACCTCC | + |
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Preference number: 4 (lower is better) Translates to: GSQETRSHIHSHGLSTLALRVRI*TRPTTS Trigger: GGAGGTGGTGGGCCGAGTCCAGATGCGGACACGGAG...GGCCAGAGTGCTCAGCCCATGACTATGGATGTGGCTCCTAGTCTCCTGGCTTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR TCA 90 bp | AGAACAAAAGGGCAGAAAAGGAGAAAGCGGCGGGAAGGAAGCCAGGAGACTAGGGCAGGAGGCGTCATCTaGGCCAGTGCAGATGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: RTKGQKRRKRREGSQETRAGGVI*ASADGL Trigger: GAGGCCATCTGCACTGGCTCAGATGACGCCTCCTGC...CCTAGTCTCCTGGCTTCCTTCCCGCCGCTTTCTCCTTTTCTGCCCTTTTGTTCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR GCA 90 bp | AGAACAAAAGGGCAGAAAAGGAGAAAGCGGCGGGAAGGAAGCCAGGAGACTAGGAGTTGCTCCGCCTCCTaGCTCAGCTGCTCCATCTCC | + |
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Preference number: 4 (lower is better) Translates to: RTKGQKRRKRREGSQETRSCSAS*LSCSIS Trigger: GGAGATGGAGCAGCTGAGGCAGGAGGCGGAGCAACT...CCTAGTCTCCTGGCTTCCTTCCCGCCGCTTTCTCCTTTTCTGCCCTTTTGTTCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR CCA 90 bp | TCATGGGCTGAGCACTCTGGCCATTCCCCATCTGGACAAAGGCTACTGGTAACCCTGAGCCAGTGCAGATaGCCTCCCCGTTGGGAAAGA | + |
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Preference number: 4 (lower is better) Translates to: SWAEHSGHSPSGQRLLVTLSQCR*PPRWER Trigger: TCTTTCCCAACGGGGAGGCCATCTGCACTGGCTCAG...GGTTACCAGTAGCCTTTGTCCAGATGGGGAATGGCCAGAGTGCTCAGCCCATGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR GCA 90 bp | GCTGAGCACTCTGGCCATTCCCCATCTGGACAAAGGCTACTGGTAACCCAGGAGCTGGCATCAGCAATCTaGTTCTTGAGTTGCTCCGCC | + |
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Preference number: 4 (lower is better) Translates to: AEHSGHSPSGQRLLVTQELASAI*FLSCSA Trigger: GGCGGAGCAACTCAAGAAGCAGATTGCTGATGCCAG...CTCCTGGGTTACCAGTAGCCTTTGTCCAGATGGGGAATGGCCAGAGTGCTCAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR TCA 90 bp | GGGGCAGTTCTTGCCCTTAAGTCCCTGATGCTTCCAAAGGCACACTCCCATAATCAAGCTCAGCCAGAGTaGTGTCCGCACAGGCTTTCC | + |
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Preference number: 4 (lower is better) Translates to: GAVLALKSLMLPKAHSHNQAQPE*CPHRLS Trigger: GGAAAGCCTGTGCGGACATCACTCTGGCTGAGCTTG...ATTATGGGAGTGTGCCTTTGGAAGCATCAGGGACTTAAGGGCAAGAACTGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR CCA 90 bp | CTTGCCCTTAAGTCCCTGATGCTTCCAAAGGCACACTCCCATAATCCCACCTGCGAAGAGTTTGTAGTCTaGGGACACAGCCAGGCTCAT | + |
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Preference number: 4 (lower is better) Translates to: LALKSLMLPKAHSHNPTCEEFVV*GHSQAH Trigger: ATGAGCCTGGCTGTGTCCCCAGACTACAAACTCTTC...GCAGGTGGGATTATGGGAGTGTGCCTTTGGAAGCATCAGGGACTTAAGGGCAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR TCA 90 bp | GAACAAAAGGGCAGAAAAGGAGAAAGCGGCGGGAAGGAAGCCAGGAGACTAGGAAGAAACAGATGGCATTaGTGTCTGACTCATGGCCAG | + |
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Preference number: 4 (lower is better) Translates to: EQKGRKGESGGKEARRLGRNRWH*CLTHGQ Trigger: CTGGCCATGAGTCAGACATCAATGCCATCTGTTTCT...TCCTAGTCTCCTGGCTTCCTTCCCGCCGCTTTCTCCTTTTCTGCCCTTTTGTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR TCA 90 bp | TTCCAAAGGCACACTCCCATAATCCCACCTGCTCTTAAAAGGAAGTTTACTAGGCAGCAATCTGCTTCTTaGGTTGCTCCGCCTCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: FQRHTPIIPPALKRKFTRQQSAS*VAPPPA Trigger: GGCAGGAGGCGGAGCAACTCAAGAAGCAGATTGCTG...CCTAGTAAACTTCCTTTTAAGAGCAGGTGGGATTATGGGAGTGTGCCTTTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR TCA 90 bp | GAACAAAAGGGCAGAAAAGGAGAAAGCGGCGGGAAGGAAGCCAGGAGACTAGGATTTGAGGTTGTAGATTaGACACATGTTGTCCAGCCC | + |
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Preference number: 4 (lower is better) Translates to: EQKGRKGESGGKEARRLGFEVVD*THVVQP Trigger: GGGCTGGACAACATGTGTTCAATCTACAACCTCAAA...TCCTAGTCTCCTGGCTTCCTTCCCGCCGCTTTCTCCTTTTCTGCCCTTTTGTTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR TCA 90 bp | TTCCAAAGGCACACTCCCATAATCCCACCTGCTCTTAAAAGGAAGTTTACTAGGTGGCCAGTGAAAGTCTaGCGACAGGTCCCTTCCCTC | + |
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Preference number: 4 (lower is better) Translates to: FQRHTPIIPPALKRKFTRWPVKV*RQVPSL Trigger: GAGGGAAGGGACCTGTCGTCAGACTTTCACTGGCCA...CCTAGTAAACTTCCTTTTAAGAGCAGGTGGGATTATGGGAGTGTGCCTTTGGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR CCA 90 bp | GGGGCAGTTCTTGCCCTTAAGTCCCTGATGCTTCCAAAGGCACACTCCCATAATCTGACTCTGTTGTCATaGCCAGAGAGTATGCCTACA | + |
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Preference number: 4 (lower is better) Translates to: GAVLALKSLMLPKAHSHNLTLLS*PESMPT Trigger: TGTAGGCATACTCTCTGGCCATGACAACAGAGTCAG...ATTATGGGAGTGTGCCTTTGGAAGCATCAGGGACTTAAGGGCAAGAACTGCCCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR GCA 90 bp | TTCCAAAGGCACACTCCCATAATCCCACCTGCTCTTAAAAGGAAGTTTACTAGGATCTGCTTCTTGAGTTaGTCCGCCTCCTGCCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: FQRHTPIIPPALKRKFTRICFLS*SASCLS Trigger: GCTGAGGCAGGAGGCGGAGCAACTCAAGAAGCAGAT...CCTAGTAAACTTCCTTTTAAGAGCAGGTGGGATTATGGGAGTGTGCCTTTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR CCA 90 bp | GGGGCAGTTCTTGCCCTTAAGTCCCTGATGCTTCCAAAGGCACACTCCCATAATCATGCACCTTATTGGTaGTATAAGTGTCCCACACGA | + |
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Preference number: 4 (lower is better) Translates to: GAVLALKSLMLPKAHSHNHAPYW*YKCPTR Trigger: TCGTGTGGGACACTTATACCACCAATAAGGTGCATG...ATTATGGGAGTGTGCCTTTGGAAGCATCAGGGACTTAAGGGCAAGAACTGCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR GCA 90 bp | TTCCAAAGGCACACTCCCATAATCCCACCTGCTCTTAAAAGGAAGTTTACTAGGGAAGTCATCATAGCCTaGAAAGAGCAGGCGCCCACT | + |
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Preference number: 4 (lower is better) Translates to: FQRHTPIIPPALKRKFTREVIIA*KEQAPT Trigger: AGTGGGCGCCTGCTCTTTGCAGGCTATGATGACTTC...CCTAGTAAACTTCCTTTTAAGAGCAGGTGGGATTATGGGAGTGTGCCTTTGGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR CAA 90 bp | CACTCTGGCCATTCCCCATCTGGACAAAGGCTACTGGTAACCCAGGAGGACTCTCAGATGGCCTCCCCGTaGGGAAAGAAACAGATGGCA | + |
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Preference number: 5 (lower is better) Translates to: HSGHSPSGQRLLVTQEDSQMASP*GKKQMA Trigger: TGCCATCTGTTTCTTTCCCAACGGGGAGGCCATCTG...AGAGTCCTCCTGGGTTACCAGTAGCCTTTGTCCAGATGGGGAATGGCCAGAGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR CAA 90 bp | CTAGGGTGGGGAAGGGGTCCATTCTTGTTTATTAAGGGAGAGGCTGTGAGGGCTAATCTGCTTCTTGAGTaGCTCCGCCTCCTGCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LGWGRGPFLFIKGEAVRANLLLE*LRLLPQ Trigger: CTGAGGCAGGAGGCGGAGCAACTCAAGAAGCAGATT...AGCCCTCACAGCCTCTCCCTTAATAAACAAGAATGGACCCCTTCCCCACCCTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR CAA 90 bp | CTTGCCCTTAAGTCCCTGATGCTTCCAAAGGCACACTCCCATAATCCCACCTGCTCAGCAATCTGCTTCTaGAGTTGCTCCGCCTCCTGC | + |
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Preference number: 5 (lower is better) Translates to: LALKSLMLPKAHSHNPTCSAICF*SCSASC Trigger: GCAGGAGGCGGAGCAACTCAAGAAGCAGATTGCTGA...GCAGGTGGGATTATGGGAGTGTGCCTTTGGAAGCATCAGGGACTTAAGGGCAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS-3UTR CAA 90 bp | CTTGCCCTTAAGTCCCTGATGCTTCCAAAGGCACACTCCCATAATCCCACCTGCAGGCAGCTGACTCTGTaGTCATGGCCAGAGAGTATG | + |
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Preference number: 5 (lower is better) Translates to: LALKSLMLPKAHSHNPTCRQLTL*SWPESM Trigger: CATACTCTCTGGCCATGACAACAGAGTCAGCTGCCT...GCAGGTGGGATTATGGGAGTGTGCCTTTGGAAGCATCAGGGACTTAAGGGCAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS CCA 72 bp | GCCAGATGTCCCCTTAATGTCCTCCGTGTCCGCATCTaGACTCGGCCCACCACCTCCAGGCCAGACACAAGC | + |
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Preference number: 6 (lower is better) Translates to: ARCPLNVLRVRI*TRPTTSRPDTS Trigger: GCTTGTGTCTGGCCTGGAGGTGGTGGGCCGAGTCCAGATGCGGACACGGAGGACATTAAGGGGACATCTGGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS GCA 72 bp | CAGGCTTTCCTGGCATCAGCAATCTGCTTCTTGAGTTaGTCCGCCTCCTGCCTCAGCTGCTCCATCTCCCCC | + |
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Preference number: 6 (lower is better) Translates to: QAFLASAICFLS*SASCLSCSISP Trigger: GGGGGAGATGGAGCAGCTGAGGCAGGAGGCGGAGCAACTCAAGAAGCAGATTGCTGATGCCAGGAAAGCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS GCA 72 bp | GATGCTCTCCTGGGAATAGGCAGTCAGTTCCTGGTCTaGCCTCAGGTCAAAGAGGCGGCAGGAGGCGTCATC | + |
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Preference number: 6 (lower is better) Translates to: DALLGIGSQFLV*PQVKEAAGGVI Trigger: GATGACGCCTCCTGCCGCCTCTTTGACCTGAGGGCAGACCAGGAACTGACTGCCTATTCCCAGGAGAGCATC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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| CDS GCA 72 bp | GTGATGTCCGCACAGGCTTTCCTGGCATCAGCAATCTaGTTCTTGAGTTGCTCCGCCTCCTGCCTCAGCTGC | + |
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Preference number: 6 (lower is better) Translates to: VMSAQAFLASAI*FLSCSASCLSC Trigger: GCAGCTGAGGCAGGAGGCGGAGCAACTCAAGAAGCAGATTGCTGATGCCAGGAAAGCCTGTGCGGACATCAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000024206.6 |
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