RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GNAI3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000000001

Ensembl transcript IDs: ENSMUST00000000001.5

Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGCGACTGGACCTCAAAAGGCACTGATCAAACTACTGATCTGAAATaGTCCAAATGCATTGTTTGCTGTCCCTCAGTGTCCACTCAGTGT +
Preference number: 1 (lower is better)
Translates to: SDWTSKGTDQTTDLK*SKCIVCCPSVSTQC
Trigger: ACACTGAGTGGACACTGAGGGACAGCAAACAATGCATTTGGAGCATTTCAGATCAGTAGTTTGATCAGTGCCTTTTGAGGTCCAGTCGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR GCA 90 bp ACCTCAAAAGGCACTGATCAAACTACTGATCTGAAATGCTCCAAATaGATTGTTTGCTGTCCCTCAGTGTCCACTCAGTGTTTAATGACA +
Preference number: 1 (lower is better)
Translates to: TSKGTDQTTDLKCSK*IVCCPSVSTQCLMT
Trigger: TGTCATTAAACACTGAGTGGACACTGAGGGACAGCAAACAATGCATTTGGAGCATTTCAGATCAGTAGTTTGATCAGTGCCTTTTGAGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR TCA 90 bp AAACACGTAAGAATTAAAAATTGTAAAAGCTGCCAACAAAGGCACTaGTCACCGTGGCTTGCTTCTGAAGCAGTTCTGACCATCAACCTT +
Preference number: 1 (lower is better)
Translates to: KHVRIKNCKSCQQRH*SPWLASEAVLTINL
Trigger: AAGGTTGATGGTCAGAACTGCTTCAGAAGCAAGCCACGGTGATCAGTGCCTTTGTTGGCAGCTTTTACAATTTTTAATTCTTACGTGTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR-3UTR GCA 90 bp GGGCATCTTATTCAAAACCTCCCCATGACCGAGACAAACAGGCAAGATTCCATGTCCTTGGTCCTGTCATaGGTGCTGCTGACCCAAGAG +
Preference number: 2 (lower is better)
Translates to: GHLIQNLPMTETNRQDSMSLVLS*VLLTQE
Trigger: CTCTTGGGTCAGCAGCACGCATGACAGGACCAAGGA...CATGGAATCTTGCCTGTTTGTCTCGGTCATGGGGAGGTTTTGAATAAGATGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR-3UTR TCA 90 bp ATGGATCCGAGCCACAGCGACTGGACCTCAAAAGGCACTGATCAAACTACTGATTTCAAAACCTCCCCATaGCCGAGACAAACAGGCAAG +
Preference number: 2 (lower is better)
Translates to: MDPSHSDWTSKGTDQTTDFKTSP*PRQTGK
Trigger: CTTGCCTGTTTGTCTCGGTCATGGGGAGGTTTTGAA...ATCAGTAGTTTGATCAGTGCCTTTTGAGGTCCAGTCGCTGTGGCTCGGATCCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR-3UTR CCA 90 bp GATGAATGGATCCGAGCCACAGCGACTGGACCTCAAAAGGCACTGATCAAACTATACATGTTTAAGTTCTaGAAGGCAGCACCTCAACTT +
Preference number: 2 (lower is better)
Translates to: DEWIRATATGPQKALIKLYMFKF*KAAPQL
Trigger: AAGTTGAGGTGCTGCCTTCCAGAACTTAAACATGTA...TAGTTTGATCAGTGCCTTTTGAGGTCCAGTCGCTGTGGCTCGGATCCATTCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR-3UTR TCA 90 bp ACAGTTAACATTGCTACAGTAAAAACGATGGCAAACAGGGATTTGGCACCACATCCAAGAGACAGTAGATaGCATCTGGTCTCAACACTC +
Preference number: 2 (lower is better)
Translates to: TVNIATVKTMANRDLAPHPRDSR*HLVSTL
Trigger: GAGTGTTGAGACCAGATGTCATCTACTGTCTCTTGG...ATGTGGTGCCAAATCCCTGTTTGCCATCGTTTTTACTGTAGCAATGTTAACTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR-3UTR GCA 90 bp GCAACCGTAGGCTCTTCACTCACCGTTTGTTTTAATACTGCTGCCAACTGTAACTCTCAATTTAGCATCTaGATCTCATTGACGGCTATC +
Preference number: 2 (lower is better)
Translates to: ATVGSSLTVCFNTAANCNSQFSI*ISLTAI
Trigger: GATAGCCGTCAATGAGATGCAGATGCTAAATTGAGA...GTTACAGTTGGCAGCAGTATTAAAACAAACGGTGAGTGAAGAGCCTACGGTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR-3UTR GCA 90 bp CATCAGTATTCATCTAGTAATTTGGTAATCAGCACAAACAAGGTTAACCCCGACTCTGGTGACATTGTGTaGATAGTTAAGACTCAGTCC +
Preference number: 2 (lower is better)
Translates to: HQYSSSNLVISTNKVNPDSGDIV*IVKTQS
Trigger: GGACTGAGTCTTAACTATGCACACAATGTCACCAGA...GTCGGGGTTAACCTTGTTTGTGCTGATTACCAAATTACTAGATGAATACTGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR-3UTR TCA 90 bp CATCAGTATTCATCTAGTAATTTGGTAATCAGCACAAACAAGGTTAACCCCGACAAAGATGGGGGAAAGTaGGCTACATGTTTAAGTTCT +
Preference number: 2 (lower is better)
Translates to: HQYSSSNLVISTNKVNPDKDGGK*ATCLSS
Trigger: AGAACTTAAACATGTAGCTCACTTTCCCCCATCTTT...GTCGGGGTTAACCTTGTTTGTGCTGATTACCAAATTACTAGATGAATACTGATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR CAA 90 bp TCCAAGAAGCAGTTTAACACACTACATCAGTATTCATCTAGTAATTaGGTAATCAGCACAAACAAGGTTAACCCCGACAAATACAACTTC +
Preference number: 2 (lower is better)
Translates to: SKKQFNTLHQYSSSN*VISTNKVNPDKYNF
Trigger: GAAGTTGTATTTGTCGGGGTTAACCTTGTTTGTGCTGATTACCAAATTACTAGATGAATACTGATGTAGTGTGTTAAACTGCTTCTTGGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR GCA 72 bp GATTCTGCGTGTTGCTGCCATTCCTTGGTCCTGTCATaGGTGCTGCTGACCCAAGAGACAGTAGATGACATC +
Preference number: 3 (lower is better)
Translates to: DSACCCHSLVLS*VLLTQETVDDI
Trigger: GATGTCATCTACTGTCTCTTGGGTCAGCAGCACGCATGACAGGACCAAGGAATGGCAGCAACACGCAGAATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR TCA 72 bp CCTGTCATGCGTGCTGCTGACCCAAGAGACAGTAGATaGCATCTGGTCTCAACACTCCTCCCTGTAATAGCT +
Preference number: 3 (lower is better)
Translates to: PVMRAADPRDSR*HLVSTLLPVIA
Trigger: AGCTATTACAGGGAGGAGTGTTGAGACCAGATGTCATCTACTGTCTCTTGGGTCAGCAGCACGCATGACAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR TCA 72 bp CTGCCAACAAAGGCACTGATCACCGTGGCTTGCTTCTaGAGCAGTTCTGACCATCAACCTTCTTTCAAACGA +
Preference number: 3 (lower is better)
Translates to: LPTKALITVACF*SSSDHQPSFKR
Trigger: TCGTTTGAAAGAAGGTTGATGGTCAGAACTGCTTCAGAAGCAAGCCACGGTGATCAGTGCCTTTGTTGGCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR-3UTR CAA 90 bp GATGAATGGATCCGAGCCACAGCGACTGGACCTCAAAAGGCACTGATCAAACTAAATGCTCCAAATGCATaGTTTGCTGTCCCTCAGTGT +
Preference number: 3 (lower is better)
Translates to: DEWIRATATGPQKALIKLNAPNA*FAVPQC
Trigger: ACACTGAGGGACAGCAAACAATGCATTTGGAGCATT...TAGTTTGATCAGTGCCTTTTGAGGTCCAGTCGCTGTGGCTCGGATCCATTCATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR GCA 72 bp GGCACTGATCAAACTACTGATCTGAAATGCTCCAAATaGATTGTTTGCTGTCCCTCAGTGTCCACTCAGTGT +
Preference number: 3 (lower is better)
Translates to: GTDQTTDLKCSK*IVCCPSVSTQC
Trigger: ACACTGAGTGGACACTGAGGGACAGCAAACAATGCATTTGGAGCATTTCAGATCAGTAGTTTGATCAGTGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR TCA 72 bp AGAATTAAAAATTGTAAAAGCTGCCAACAAAGGCACTaGTCACCGTGGCTTGCTTCTGAAGCAGTTCTGACC +
Preference number: 3 (lower is better)
Translates to: RIKNCKSCQQRH*SPWLASEAVLT
Trigger: GGTCAGAACTGCTTCAGAAGCAAGCCACGGTGATCAGTGCCTTTGTTGGCAGCTTTTACAATTTTTAATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR GCA 72 bp CAAACTACTGATCTGAAATGCTCCAAATGCATTGTTTaGTGTCCCTCAGTGTCCACTCAGTGTTTAATGACA +
Preference number: 3 (lower is better)
Translates to: QTTDLKCSKCIV*CPSVSTQCLMT
Trigger: TGTCATTAAACACTGAGTGGACACTGAGGGACAGCAAACAATGCATTTGGAGCATTTCAGATCAGTAGTTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR-3UTR CAA 90 bp ACAGTTAACATTGCTACAGTAAAAACGATGGCAAACAGGGATTTGGCACCACATAATCCCAGGTCTGATTaGAACATCTCATGCCAATTA +
Preference number: 3 (lower is better)
Translates to: TVNIATVKTMANRDLAPHNPRSD*NISCQL
Trigger: TAATTGGCATGAGATGTTCAAATCAGACCTGGGATT...ATGTGGTGCCAAATCCCTGTTTGCCATCGTTTTTACTGTAGCAATGTTAACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR TCA 72 bp ATCCAGTCATACTTTACAGTTGTCCAATCCCAGGTCTaGTTTGAACATCTCATGCCAATTAGACATTCCCTA +
Preference number: 3 (lower is better)
Translates to: IQSYFTVVQSQV*FEHLMPIRHSL
Trigger: TAGGGAATGTCTAATTGGCATGAGATGTTCAAATCAGACCTGGGATTGGACAACTGTAAAGTATGACTGGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR GCA 72 bp AAGAGGAATAGTTTCAAGATGTCTGGTGACATTGTGTaGATAGTTAAGACTCAGTCCTCAGAAGTTTCTTTT +
Preference number: 3 (lower is better)
Translates to: KRNSFKMSGDIV*IVKTQSSEVSF
Trigger: AAAAGAAACTTCTGAGGACTGAGTCTTAACTATGCACACAATGTCACCAGACATCTTGAAACTATTCCTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR TCA 90 bp ATGGATCCGAGCCACAGCGACTGGACCTCAAAAGGCACTGATCAAACTACTGATTGTCTGTGGCACAGGTaGAGTGAGTGTAGACCTCCT +
Preference number: 4 (lower is better)
Translates to: MDPSHSDWTSKGTDQTTDCLWHR*SECRPP
Trigger: AGGAGGTCTACACTCACTTCACCTGTGCCACAGACA...ATCAGTAGTTTGATCAGTGCCTTTTGAGGTCCAGTCGCTGTGGCTCGGATCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR TCA 90 bp GGGCATCTTATTCAAAACCTCCCCATGACCGAGACAAACAGGCAAGATTCCATGGCAGAATCATTGAGCTaGTATTCCCTGGACCTGCTA +
Preference number: 4 (lower is better)
Translates to: GHLIQNLPMTETNRQDSMAESLS*YSLDLL
Trigger: TAGCAGGTCCAGGGAATATCAGCTCAATGATTCTGC...CATGGAATCTTGCCTGTTTGTCTCGGTCATGGGGAGGTTTTGAATAAGATGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR TCA 90 bp GGGCATCTTATTCAAAACCTCCCCATGACCGAGACAAACAGGCAAGATTCCATGATGAAGCAGAATCATTaGGCTGATATTCCCTGGACC +
Preference number: 4 (lower is better)
Translates to: GHLIQNLPMTETNRQDSMMKQNH*ADIPWT
Trigger: GGTCCAGGGAATATCAGCTCAATGATTCTGCTTCAT...CATGGAATCTTGCCTGTTTGTCTCGGTCATGGGGAGGTTTTGAATAAGATGCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR GCA 90 bp CTGTCATGCGTGCTGCTGACCCAAGAGACAGTAGATGACATCTGGTCTCAACACCATGGCTCGTATGATTaGAATGATGGACTGAATAGT +
Preference number: 4 (lower is better)
Translates to: LSCVLLTQETVDDIWSQHHGSYD*NDGLNS
Trigger: ACTATTCAGTCCATCATTGCAATCATACGAGCCATG...GTGTTGAGACCAGATGTCATCTACTGTCTCTTGGGTCAGCAGCACGCATGACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR GCA 90 bp CTGTCATGCGTGCTGCTGACCCAAGAGACAGTAGATGACATCTGGTCTCAACACCACACAAAAGATAATTaGTGTCACTCCCTCAAAACA +
Preference number: 4 (lower is better)
Translates to: LSCVLLTQETVDDIWSQHHTKDN*CHSLKT
Trigger: TGTTTTGAGGGAGTGACAGCAATTATCTTTTGTGTG...GTGTTGAGACCAGATGTCATCTACTGTCTCTTGGGTCAGCAGCACGCATGACAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR CCA 90 bp GATGAATGGATCCGAGCCACAGCGACTGGACCTCAAAAGGCACTGATCAAACTACCTCTTCGTATGTATTaGAACCTGTGTATTCTGGAT +
Preference number: 4 (lower is better)
Translates to: DEWIRATATGPQKALIKLPLRMY*NLCILD
Trigger: ATCCAGAATACACAGGTTCCAATACATACGAAGAGG...TAGTTTGATCAGTGCCTTTTGAGGTCCAGTCGCTGTGGCTCGGATCCATTCATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR CCA 90 bp GGGCATCTTATTCAAAACCTCCCCATGACCGAGACAAACAGGCAAGATTCCATGGAGTGTAGACCTCCTTaGTATCTTTTCTTCGGTTCA +
Preference number: 4 (lower is better)
Translates to: GHLIQNLPMTETNRQDSMECRPP*YLFFGS
Trigger: TGAACCGAAGAAAAGATACCAAGGAGGTCTACACTC...CATGGAATCTTGCCTGTTTGTCTCGGTCATGGGGAGGTTTTGAATAAGATGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR GCA 90 bp GCAACCGTAGGCTCTTCACTCACCGTTTGTTTTAATACTGCTGCCAACTGTAACCTGAATGTAAGCAGCTaGCTCTTCGTATGTATTGGA +
Preference number: 4 (lower is better)
Translates to: ATVGSSLTVCFNTAANCNLNVSS*LFVCIG
Trigger: TCCAATACATACGAAGAGGCAGCTGCTTACATTCAG...GTTACAGTTGGCAGCAGTATTAAAACAAACGGTGAGTGAAGAGCCTACGGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR CCA 90 bp CATCTTATTCAAAACCTCCCCATGACCGAGACAAACAGGCAAGATTCCATGTGGAACATCTTGCTGAGTTaGAATGTAGTTGGTCTGGGA +
Preference number: 4 (lower is better)
Translates to: HLIQNLPMTETNRQDSMWNILLS*NVVGLG
Trigger: TCCCAGACCAACTACATTCCAACTCAGCAAGATGTT...CCACATGGAATCTTGCCTGTTTGTCTCGGTCATGGGGAGGTTTTGAATAAGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR TCA 90 bp ACAGTTAACATTGCTACAGTAAAAACGATGGCAAACAGGGATTTGGCACCACATTTTACATTCGTCCTCTaGATAGCCGTCCTCATGAAT +
Preference number: 4 (lower is better)
Translates to: TVNIATVKTMANRDLAPHFTFVL*IAVLMN
Trigger: ATTCATGAGGACGGCTATTCAGAGGACGAATGTAAA...ATGTGGTGCCAAATCCCTGTTTGCCATCGTTTTTACTGTAGCAATGTTAACTGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR GCA 90 bp CATCTTATTCAAAACCTCCCCATGACCGAGACAAACAGGCAAGATTCCATGTGGAATTTCATGCTTTCATaGATTCGGTTCATTTCCTCA +
Preference number: 4 (lower is better)
Translates to: HLIQNLPMTETNRQDSMWNFMLS*IRFISS
Trigger: TGAGGAAATGAACCGAATGCATGAAAGCATGAAATT...CCACATGGAATCTTGCCTGTTTGTCTCGGTCATGGGGAGGTTTTGAATAAGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR TCA 90 bp CATCAGTATTCATCTAGTAATTTGGTAATCAGCACAAACAAGGTTAACCCCGACAGCCGTCCTCATGAATaGTTTTCATCTGTTTCACGA +
Preference number: 4 (lower is better)
Translates to: HQYSSSNLVISTNKVNPDSRPHE*FSSVSR
Trigger: TCGTGAAACAGATGAAAATCATTCATGAGGACGGCT...GTCGGGGTTAACCTTGTTTGTGCTGATTACCAAATTACTAGATGAATACTGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
3UTR CAA 72 bp AACATTGCTACAGTAAAAACGATGGCAAACAGGGATTaGGCACCACATTTACAAAGGAAAAGCATGCACTGT +
Preference number: 4 (lower is better)
Translates to: NIATVKTMANRD*APHLQRKSMHC
Trigger: ACAGTGCATGCTTTTCCTTTGTAAATGTGGTGCCAAATCCCTGTTTGCCATCGTTTTTACTGTAGCAATGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR CAA 90 bp GCAACCGTAGGCTCTTCACTCACCGTTTGTTTTAATACTGCTGCCAACTGTAACAGCAGCTTCACTTCTTaGGCCGCTTTCTCCCCGTCC +
Preference number: 5 (lower is better)
Translates to: ATVGSSLTVCFNTAANCNSSFTS*AAFSPS
Trigger: GGACGGGGAGAAAGCGGCCAAAGAAGTGAAGCTGCT...GTTACAGTTGGCAGCAGTATTAAAACAAACGGTGAGTGAAGAGCCTACGGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR CAA 90 bp GCAACCGTAGGCTCTTCACTCACCGTTTGTTTTAATACTGCTGCCAACTGTAACGAACATCTTGCTGAGTaGGAATGTAGTTGGTCTGGG +
Preference number: 5 (lower is better)
Translates to: ATVGSSLTVCFNTAANCNEHLAE*ECSWSG
Trigger: CCCAGACCAACTACATTCCAACTCAGCAAGATGTTC...GTTACAGTTGGCAGCAGTATTAAAACAAACGGTGAGTGAAGAGCCTACGGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS-3UTR CAA 90 bp CATCAGTATTCATCTAGTAATTTGGTAATCAGCACAAACAAGGTTAACCCCGACTGTCCGAAGAACATCTaGCTGAGTTGGAATGTAGTT +
Preference number: 5 (lower is better)
Translates to: HQYSSSNLVISTNKVNPDCPKNI*LSWNVV
Trigger: AACTACATTCCAACTCAGCAAGATGTTCTTCGGACA...GTCGGGGTTAACCTTGTTTGTGCTGATTACCAAATTACTAGATGAATACTGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS CAA 90 bp GGTCTCCACAATGCCTGTAGTCTTCACTCTTGTCCGAAGAACATCTaGCTGAGTTGGAATGTAGTTGGTCTGGGATATTCTATCCAAATC +
Preference number: 6 (lower is better)
Translates to: GLHNACSLHSCPKNI*LSWNVVGLGYSIQI
Trigger: GATTTGGATAGAATATCCCAGACCAACTACATTCCAACTCAGCAAGATGTTCTTCGGACAAGAGTGAAGACTACAGGCATTGTGGAGACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5
CDS CAA 72 bp AATGCCTGTAGTCTTCACTCTTGTCCGAAGAACATCTaGCTGAGTTGGAATGTAGTTGGTCTGGGATATTCT +
Preference number: 6 (lower is better)
Translates to: NACSLHSCPKNI*LSWNVVGLGYS
Trigger: AGAATATCCCAGACCAACTACATTCCAACTCAGCAAGATGTTCTTCGGACAAGAGTGAAGACTACAGGCATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000000001.5