RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GNA15 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000034792

Ensembl transcript IDs: ENSMUST00000043709.8

Found 71 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGGGACTCTCTCCCTGTGGGCTGGCTTCCCCACTTGGCAGCTCCTaGACCTGCAGTTCCACGCGCGGCCACCAGGGGGAGGTATGTCCT +
Preference number: 1 (lower is better)
Translates to: QGLSPCGLASPLGSS*TCSSTRGHQGEVCP
Trigger: AGGACATACCTCCCCCTGGTGGCCGCGCGTGGAACTGCAGGTCCAGGAGCTGCCAAGTGGGGAAGCCAGCCCACAGGGAGAGAGTCCCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR CCA 90 bp CAACTAGAAGAAGGGCGAGGGAATAAATTACAGGGGAGCTGGGCTTaGGGGCCCAGTAGGAAGCAGGGACTCTCTCCCTGTGGGCTGGCT +
Preference number: 1 (lower is better)
Translates to: QLEEGRGNKLQGSWA*GPSRKQGLSPCGLA
Trigger: AGCCAGCCCACAGGGAGAGAGTCCCTGCTTCCTACTGGGCCCCCAAGCCCAGCTCCCCTGTAATTTATTCCCTCGCCCTTCTTCTAGTTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR CCA 90 bp CTCCAACAACTAGAAGAAGGGCGAGGGAATAAATTACAGGGGAGCTaGGCTTGGGGGCCCAGTAGGAAGCAGGGACTCTCTCCCTGTGGG +
Preference number: 1 (lower is better)
Translates to: LQQLEEGRGNKLQGS*AWGPSRKQGLSPCG
Trigger: CCCACAGGGAGAGAGTCCCTGCTTCCTACTGGGCCCCCAAGCCCAGCTCCCCTGTAATTTATTCCCTCGCCCTTCTTCTAGTTGTTGGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR TCA 90 bp CATTTATTTATCTGTGTGGGTAGGTGTGTCACCACCATGCACGCCTaGGGAGATAGAGAACTTCTCCTAGGACTCCGCTCCCTCTCTCTG +
Preference number: 1 (lower is better)
Translates to: HLFICVGRCVTTMHA*GDRELLLGLRSLSL
Trigger: CAGAGAGAGGGAGCGGAGTCCTAGGAGAAGTTCTCTATCTCCTCAGGCGTGCATGGTGGTGACACACCTACCCACACAGATAAATAAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR TCA 90 bp GAAGTCACAAGGTCCCGGACAGTTCTATCCGGTTTTGTTTGTTTTTaGAAACATGGTCCTGGAACTCACAGAAATCCTCCTGCCTCTGCC +
Preference number: 1 (lower is better)
Translates to: EVTRSRTVLSGFVCF*KHGPGTHRNPPASA
Trigger: GGCAGAGGCAGGAGGATTTCTGTGAGTTCCAGGACCATGTTTTCAAAAACAAACAAAACCGGATAGAACTGTCCGGGACCTTGTGACTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR CAA 90 bp CCAGTAGGAAGCAGGGACTCTCTCCCTGTGGGCTGGCTTCCCCACTaGGCAGCTCCTGGACCTGCAGTTCCACGCGCGGCCACCAGGGGG +
Preference number: 2 (lower is better)
Translates to: PVGSRDSLPVGWLPH*AAPGPAVPRAATRG
Trigger: CCCCCTGGTGGCCGCGCGTGGAACTGCAGGTCCAGGAGCTGCCAAGTGGGGAAGCCAGCCCACAGGGAGAGAGTCCCTGCTTCCTACTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR-3UTR CCA 90 bp TTGGTGGCAAGGCACTCTCACCAGCCATCTTGCCGACCTCGGTTTCCCCTTTGGCAGGGGAGCTGGGCTTaGGGGCCCAGTAGGAAGCAG +
Preference number: 2 (lower is better)
Translates to: LVARHSHQPSCRPRFPLWQGSWA*GPSRKQ
Trigger: CTGCTTCCTACTGGGCCCCCAAGCCCAGCTCCCCTG...CCAAAGGGGAAACCGAGGTCGGCAAGATGGCTGGTGAGAGTGCCTTGCCACCAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR-3UTR CCA 90 bp TTGGTGGCAAGGCACTCTCACCAGCCATCTTGCCGACCTCGGTTTCCCCTTTGGGCTGGCTTCCCCACTTaGCAGCTCCTGGACCTGCAG +
Preference number: 2 (lower is better)
Translates to: LVARHSHQPSCRPRFPLWAGFPT*QLLDLQ
Trigger: CTGCAGGTCCAGGAGCTGCCAAGTGGGGAAGCCAGC...CCAAAGGGGAAACCGAGGTCGGCAAGATGGCTGGTGAGAGTGCCTTGCCACCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR-3UTR CCA 90 bp CCTGGAACTCACAGAAATCCTCCTGCCTCTGCCTCCGGAGCGCTGGGGTTAAAGAAATTACAGGGGAGCTaGGCTTGGGGGCCCAGTAGG +
Preference number: 2 (lower is better)
Translates to: PGTHRNPPASASGALGLKKLQGS*AWGPSR
Trigger: CCTACTGGGCCCCCAAGCCCAGCTCCCCTGTAATTT...CTTTAACCCCAGCGCTCCGGAGGCAGAGGCAGGAGGATTTCTGTGAGTTCCAGG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR-3UTR GCA 90 bp CTCATGTCCTTTCTCCAACAACTAGAAGAAGGGCGAGGGAATAAATTACAGGGGGGCAGCTCCTGGACCTaGAGTTCCACGCGCGGCCAC +
Preference number: 2 (lower is better)
Translates to: LMSFLQQLEEGRGNKLQGGSSWT*SSTRGH
Trigger: GTGGCCGCGCGTGGAACTGCAGGTCCAGGAGCTGCC...CCCCTGTAATTTATTCCCTCGCCCTTCTTCTAGTTGTTGGAGAAAGGACATGAG
56% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR-3UTR CCA 90 bp TTGGTGGCAAGGCACTCTCACCAGCCATCTTGCCGACCTCGGTTTCCCCTTTGGTTGTTTTTGAAAACATaGTCCTGGAACTCACAGAAA +
Preference number: 2 (lower is better)
Translates to: LVARHSHQPSCRPRFPLWLFLKT*SWNSQK
Trigger: TTTCTGTGAGTTCCAGGACCATGTTTTCAAAAACAA...CCAAAGGGGAAACCGAGGTCGGCAAGATGGCTGGTGAGAGTGCCTTGCCACCAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR CCA 72 bp GCAGGGACTCTCTCCCTGTGGGCTGGCTTCCCCACTTaGCAGCTCCTGGACCTGCAGTTCCACGCGCGGCCA +
Preference number: 3 (lower is better)
Translates to: AGTLSLWAGFPT*QLLDLQFHARP
Trigger: TGGCCGCGCGTGGAACTGCAGGTCCAGGAGCTGCCAAGTGGGGAAGCCAGCCCACAGGGAGAGAGTCCCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR GCA 72 bp TGTGGGCTGGCTTCCCCACTTGGCAGCTCCTGGACCTaGAGTTCCACGCGCGGCCACCAGGGGGAGGTATGT +
Preference number: 3 (lower is better)
Translates to: CGLASPLGSSWT*SSTRGHQGEVC
Trigger: ACATACCTCCCCCTGGTGGCCGCGCGTGGAACTGCAGGTCCAGGAGCTGCCAAGTGGGGAAGCCAGCCCACA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR CCA 72 bp GGCCCAGTAGGAAGCAGGGACTCTCTCCCTGTGGGCTaGCTTCCCCACTTGGCAGCTCCTGGACCTGCAGTT +
Preference number: 3 (lower is better)
Translates to: GPVGSRDSLPVG*LPHLAAPGPAV
Trigger: AACTGCAGGTCCAGGAGCTGCCAAGTGGGGAAGCCAGCCCACAGGGAGAGAGTCCCTGCTTCCTACTGGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR TCA 72 bp GACTCCGCTCCCTCTCTCTGTCCACTGAACAGGTCCTaGAGTCCAGTTGTCAGGCTTGGTGGCAAGGCACTC +
Preference number: 3 (lower is better)
Translates to: DSAPSLCPLNRS*SPVVRLGGKAL
Trigger: GAGTGCCTTGCCACCAAGCCTGACAACTGGACTTCAGGACCTGTTCAGTGGACAGAGAGAGGGAGCGGAGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR CCA 72 bp GAAATGGTCCCCACAGGAAGATGTGAACAGGGCCCCTaGGAAGTCACAAGGTCCCGGACAGTTCTATCCGGT +
Preference number: 3 (lower is better)
Translates to: EMVPTGRCEQGP*EVTRSRTVLSG
Trigger: ACCGGATAGAACTGTCCGGGACCTTGTGACTTCCCAGGGGCCCTGTTCACATCTTCCTGTGGGGACCATTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR CCA 72 bp TCCACTGAACAGGTCCTGAAGTCCAGTTGTCAGGCTTaGTGGCAAGGCACTCTCACCAGCCATCTTGCCGAC +
Preference number: 3 (lower is better)
Translates to: STEQVLKSSCQA*WQGTLTSHLAD
Trigger: GTCGGCAAGATGGCTGGTGAGAGTGCCTTGCCACCAAGCCTGACAACTGGACTTCAGGACCTGTTCAGTGGA
57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR TCA 72 bp ATCTGTGTGGGTAGGTGTGTCACCACCATGCACGCCTaGGGAGATAGAGAACTTCTCCTAGGACTCCGCTCC +
Preference number: 3 (lower is better)
Translates to: ICVGRCVTTMHA*GDRELLLGLRS
Trigger: GGAGCGGAGTCCTAGGAGAAGTTCTCTATCTCCTCAGGCGTGCATGGTGGTGACACACCTACCCACACAGAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR GCA 72 bp TTGAAAACATGGTCCTGGAACTCACAGAAATCCTCCTaGCTCTGCCTCCGGAGCGCTGGGGTTAAAGACCCG +
Preference number: 3 (lower is better)
Translates to: LKTWSWNSQKSS*LCLRSAGVKDP
Trigger: CGGGTCTTTAACCCCAGCGCTCCGGAGGCAGAGGCAGGAGGATTTCTGTGAGTTCCAGGACCATGTTTTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR TCA 72 bp AGGTCCCGGACAGTTCTATCCGGTTTTGTTTGTTTTTaGAAACATGGTCCTGGAACTCACAGAAATCCTCCT +
Preference number: 3 (lower is better)
Translates to: RSRTVLSGFVCF*KHGPGTHRNPP
Trigger: AGGAGGATTTCTGTGAGTTCCAGGACCATGTTTTCAAAAACAAACAAAACCGGATAGAACTGTCCGGGACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR CAA 72 bp AGCAGGGACTCTCTCCCTGTGGGCTGGCTTCCCCACTaGGCAGCTCCTGGACCTGCAGTTCCACGCGCGGCC +
Preference number: 4 (lower is better)
Translates to: SRDSLPVGWLPH*AAPGPAVPRAA
Trigger: GGCCGCGCGTGGAACTGCAGGTCCAGGAGCTGCCAAGTGGGGAAGCCAGCCCACAGGGAGAGAGTCCCTGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR TCA 90 bp ACCTGCAGTTCCACGCGCGGCCACCAGGGGGAGGTATGTCCTCGCCACGACCGCGGGAGGCCAGGTAGATaGGGGCAATCACGTTCTCGA +
Preference number: 4 (lower is better)
Translates to: TCSSTRGHQGEVCPRHDRGRPGR*GQSRSR
Trigger: TCGAGAACGTGATTGCCCTCATCTACCTGGCCTCCC...GCGGTCGTGGCGAGGACATACCTCCCCCTGGTGGCCGCGCGTGGAACTGCAGGT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR GCA 90 bp AGCTGGGCTTGGGGGCCCAGTAGGAAGCAGGGACTCTCTCCCTGTGGGCTGGCTTGGTGGGCATGCGACTaGGCAGCACGTCTTGCGCAG +
Preference number: 4 (lower is better)
Translates to: SWAWGPSRKQGLSPCGLAWWACD*AARLAQ
Trigger: CTGCGCAAGACGTGCTGCGCAGTCGCATGCCCACCA...AGCCAGCCCACAGGGAGAGAGTCCCTGCTTCCTACTGGGCCCCCAAGCCCAGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR GCA 90 bp CTCCTGGACCTGCAGTTCCACGCGCGGCCACCAGGGGGAGGTATGTCCTCGCCATCCCGCCACAGGTACTaGATGGCCACTGCATATGGC +
Preference number: 4 (lower is better)
Translates to: LLDLQFHARPPGGGMSSPSRHRY*MATAYG
Trigger: GCCATATGCAGTGGCCATGCAGTACCTGTGGCGGGA...TGGCGAGGACATACCTCCCCCTGGTGGCCGCGCGTGGAACTGCAGGTCCAGGAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR GCA 90 bp TCCCTGTGGGCTGGCTTCCCCACTTGGCAGCTCCTGGACCTGCAGTTCCACGCGTGCCTGTGGTGGGCATaGGACTGCGCAGCACGTCTT +
Preference number: 4 (lower is better)
Translates to: SLWAGFPTWQLLDLQFHACLWWA*DCAARL
Trigger: AAGACGTGCTGCGCAGTCGCATGCCCACCACAGGCA...CGCGTGGAACTGCAGGTCCAGGAGCTGCCAAGTGGGGAAGCCAGCCCACAGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR TCA 90 bp AATCCTCCTGCCTCTGCCTCCGGAGCGCTGGGGTTAAAGACCCGGCTCATGTCCTGCTGTCAGGCCTGCTaGAGGGGATCTGCAGCCGGT +
Preference number: 4 (lower is better)
Translates to: NPPASASGALGLKTRLMSCCQAC*RGSAAG
Trigger: ACCGGCTGCAGATCCCCTTCAGCAGGCCTGACAGCA...GGACATGAGCCGGGTCTTTAACCCCAGCGCTCCGGAGGCAGAGGCAGGAGGATT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CCA 90 bp AATCCTCCTGCCTCTGCCTCCGGAGCGCTGGGGTTAAAGACCCGGCTCATGTCCGGGGTCCCTGGAAGCTaGGGAAGTATGTGGCCAGGT +
Preference number: 4 (lower is better)
Translates to: NPPASASGALGLKTRLMSGVPGS*GSMWPG
Trigger: ACCTGGCCACATACTTCCCCAGCTTCCAGGGACCCC...GGACATGAGCCGGGTCTTTAACCCCAGCGCTCCGGAGGCAGAGGCAGGAGGATT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CCA 90 bp TGGAACTCACAGAAATCCTCCTGCCTCTGCCTCCGGAGCGCTGGGGTTAAAGACTTCCTGCCACCGTCCTaGGGCTCTGCGCAGCTCGCG +
Preference number: 4 (lower is better)
Translates to: WNSQKSSCLCLRSAGVKDFLPPS*GSAQLA
Trigger: CGCGAGCTGCGCAGAGCCCCAGGACGGTGGCAGGAA...GTCTTTAACCCCAGCGCTCCGGAGGCAGAGGCAGGAGGATTTCTGTGAGTTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR TCA 90 bp TGGGCTTGGGGGCCCAGTAGGAAGCAGGGACTCTCTCCCTGTGGGCTGGCTTCCGCCAGGTGGGAGGTGTaGATCTTATCTTCCAGGATG +
Preference number: 4 (lower is better)
Translates to: WAWGPSRKQGLSPCGLASARWEV*ILSSRM
Trigger: CATCCTGGAAGATAAGATTCACACCTCCCACCTGGC...GGAAGCCAGCCCACAGGGAGAGAGTCCCTGCTTCCTACTGGGCCCCCAAGCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR GCA 90 bp GAACAGGGCCCCTGGGAAGTCACAAGGTCCCGGACAGTTCTATCCGGTTTTGTTGCAGCCGGAAGGCTCTaGGGTCCTCCTCCGAGTAGC +
Preference number: 4 (lower is better)
Translates to: EQGPWEVTRSRTVLSGFVAAGRL*GPPPSS
Trigger: GCTACTCGGAGGAGGACCGCAGAGCCTTCCGGCTGC...AACAAAACCGGATAGAACTGTCCGGGACCTTGTGACTTCCCAGGGGCCCTGTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR GCA 90 bp TTTGAAAACATGGTCCTGGAACTCACAGAAATCCTCCTGCCTCTGCCTCCGGAGACCGTCCTGGGGCTCTaGGCAGCTCGCGTACACGCG +
Preference number: 4 (lower is better)
Translates to: FENMVLELTEILLPLPPETVLGL*AARVHA
Trigger: CGCGTGTACGCGAGCTGCGCAGAGCCCCAGGACGGT...CTCCGGAGGCAGAGGCAGGAGGATTTCTGTGAGTTCCAGGACCATGTTTTCAAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CCA 90 bp TGGTCCCCACAGGAAGATGTGAACAGGGCCCCTGGGAAGTCACAAGGTCCCGGAAGCTGGGGAAGTATGTaGCCAGGTGGGAGGTGTGAA +
Preference number: 4 (lower is better)
Translates to: WSPQEDVNRAPGKSQGPGSWGSM*PGGRCE
Trigger: TTCACACCTCCCACCTGGCCACATACTTCCCCAGCT...TCCGGGACCTTGTGACTTCCCAGGGGCCCTGTTCACATCTTCCTGTGGGGACCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR TCA 90 bp TTGGTGGCAAGGCACTCTCACCAGCCATCTTGCCGACCTCGGTTTCCCCTTTGGCCATTTCCTACGCTCTaGCCTCTGGCCACCAACATC +
Preference number: 4 (lower is better)
Translates to: LVARHSHQPSCRPRFPLWPFPTL*PLATNI
Trigger: GATGTTGGTGGCCAGAGGTCAGAGCGTAGGAAATGG...CCAAAGGGGAAACCGAGGTCGGCAAGATGGCTGGTGAGAGTGCCTTGCCACCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR GCA 90 bp AGCTGGGCTTGGGGGCCCAGTAGGAAGCAGGGACTCTCTCCCTGTGGGCTGGCTATGGCTTCTCGAATGTaGTCACTTTATAGGGGTCCT +
Preference number: 4 (lower is better)
Translates to: SWAWGPSRKQGLSPCGLAMASRM*SLYRGP
Trigger: AGGACCCCTATAAAGTGAGCACATTCGAGAAGCCAT...AGCCAGCCCACAGGGAGAGAGTCCCTGCTTCCTACTGGGCCCCCAAGCCCAGCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR TCA 90 bp CAACTAGAAGAAGGGCGAGGGAATAAATTACAGGGGAGCTGGGCTTGGGGGCCCTATGCGCTCCAGGTGTaGCAGGTAATACACCGCGGA +
Preference number: 4 (lower is better)
Translates to: QLEEGRGNKLQGSWAWGPYALQV*QVIHRG
Trigger: TCCGCGGTGTATTACCTGTCACACCTGGAGCGCATA...GGGCCCCCAAGCCCAGCTCCCCTGTAATTTATTCCCTCGCCCTTCTTCTAGTTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR TCA 90 bp TTGGTGGCAAGGCACTCTCACCAGCCATCTTGCCGACCTCGGTTTCCCCTTTGGAGAAGCAGTACTCATTaGTGCCTGTGGTGGGCATGC +
Preference number: 4 (lower is better)
Translates to: LVARHSHQPSCRPRFPLWRSSTH*CLWWAC
Trigger: GCATGCCCACCACAGGCATCAATGAGTACTGCTTCT...CCAAAGGGGAAACCGAGGTCGGCAAGATGGCTGGTGAGAGTGCCTTGCCACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CCA 90 bp TTGGTGGCAAGGCACTCTCACCAGCCATCTTGCCGACCTCGGTTTCCCCTTTGGATCCTGTTGATCTCCTaGTCGATTCTGGCGGCAGTC +
Preference number: 4 (lower is better)
Translates to: LVARHSHQPSCRPRFPLWILLIS*SILAAV
Trigger: GACTGCCGCCAGAATCGACCAGGAGATCAACAGGAT...CCAAAGGGGAAACCGAGGTCGGCAAGATGGCTGGTGAGAGTGCCTTGCCACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CCA 90 bp TTGGTGGCAAGGCACTCTCACCAGCCATCTTGCCGACCTCGGTTTCCCCTTTGGCCACGATGCGCAGTTTaGTTTTCTTCACGGAGAAGC +
Preference number: 4 (lower is better)
Translates to: LVARHSHQPSCRPRFPLWPRCAV*FSSRRS
Trigger: GCTTCTCCGTGAAGAAAACCAAACTGCGCATCGTGG...CCAAAGGGGAAACCGAGGTCGGCAAGATGGCTGGTGAGAGTGCCTTGCCACCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR TCA 90 bp CCTGGAACTCACAGAAATCCTCCTGCCTCTGCCTCCGGAGCGCTGGGGTTAAAGACGTTCTCGAAACAGTaGATCCATTTCCTACGCTCT +
Preference number: 4 (lower is better)
Translates to: PGTHRNPPASASGALGLKTFSKQ*IHFLRS
Trigger: AGAGCGTAGGAAATGGATTCACTGTTTCGAGAACGT...CTTTAACCCCAGCGCTCCGGAGGCAGAGGCAGGAGGATTTCTGTGAGTTCCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CCA 90 bp TTTGAAAACATGGTCCTGGAACTCACAGAAATCCTCCTGCCTCTGCCTCCGGAGCATGGCCACTGCATATaGCTTCTCGAATGTGCTCAC +
Preference number: 4 (lower is better)
Translates to: FENMVLELTEILLPLPPEHGHCI*LLECAH
Trigger: GTGAGCACATTCGAGAAGCCATATGCAGTGGCCATG...CTCCGGAGGCAGAGGCAGGAGGATTTCTGTGAGTTCCAGGACCATGTTTTCAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CCA 90 bp CTCATGTCCTTTCTCCAACAACTAGAAGAAGGGCGAGGGAATAAATTACAGGGGCTACGCTCTGACCTCTaGCCACCAACATCCACGATG +
Preference number: 4 (lower is better)
Translates to: LMSFLQQLEEGRGNKLQGLRSDL*PPTSTM
Trigger: CATCGTGGATGTTGGTGGCCAGAGGTCAGAGCGTAG...CCCCTGTAATTTATTCCCTCGCCCTTCTTCTAGTTGTTGGAGAAAGGACATGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
3UTR CAA 72 bp GGGAAGTCACAAGGTCCCGGACAGTTCTATCCGGTTTaGTTTGTTTTTGAAAACATGGTCCTGGAACTCACA +
Preference number: 4 (lower is better)
Translates to: GKSQGPGQFYPV*FVFENMVLELT
Trigger: TGTGAGTTCCAGGACCATGTTTTCAAAAACAAACAAAACCGGATAGAACTGTCCGGGACCTTGTGACTTCCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 90 bp GAACACGCTGCGGACGCTTTGCGTGTCCGTGGCACAGGTGAAGTGTaGGAAGAAGCGGCGCGCGCGGGAGCCTTTCCTGCCACCGTCCTG +
Preference number: 5 (lower is better)
Translates to: EHAADALRVRGTGEV*EEAARAGAFPATVL
Trigger: CAGGACGGTGGCAGGAAAGGCTCCCGCGCGCGCCGCTTCTTCGCACACTTCACCTGTGCCACGGACACGCAAAGCGTCCGCAGCGTGTTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 90 bp GCCAGCACCGAGTCCCGCACGTCCTTGAACACGCTGCGGACGCTTTaGGTGTCCGTGGCACAGGTGAAGTGTGCGAAGAAGCGGCGCGCG +
Preference number: 5 (lower is better)
Translates to: ASTESRTSLNTLRTL*VSVAQVKCAKKRRA
Trigger: CGCGCGCCGCTTCTTCGCACACTTCACCTGTGCCACGGACACGCAAAGCGTCCGCAGCGTGTTCAAGGACGTGCGGGACTCGGTGCTGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CAA 90 bp AGCTGGGCTTGGGGGCCCAGTAGGAAGCAGGGACTCTCTCCCTGTGGGCTGGCTGAGTCCCGCACGTCCTaGAACACGCTGCGGACGCTT +
Preference number: 5 (lower is better)
Translates to: SWAWGPSRKQGLSPCGLAESRTS*NTLRTL
Trigger: AAGCGTCCGCAGCGTGTTCAAGGACGTGCGGGACTC...AGCCAGCCCACAGGGAGAGAGTCCCTGCTTCCTACTGGGCCCCCAAGCCCAGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 90 bp CACCGCGGAGTCCAGAAGGTGGAATTCACGCCTTCGCTCGTAGCATaGACGGATGCCCGCGTCCCGCCACAGGTACTGCATGGCCACTGC +
Preference number: 5 (lower is better)
Translates to: HRGVQKVEFTPSLVA*TDARVPPQVLHGHC
Trigger: GCAGTGGCCATGCAGTACCTGTGGCGGGACGCGGGCATCCGTGCATGCTACGAGCGAAGGCGTGAATTCCACCTTCTGGACTCCGCGGTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CAA 90 bp TGGCAGCTCCTGGACCTGCAGTTCCACGCGCGGCCACCAGGGGGAGGTATGTCCGAGAAGCAGTACTCATaGATGCCTGTGGTGGGCATG +
Preference number: 5 (lower is better)
Translates to: WQLLDLQFHARPPGGGMSEKQYS*MPVVGM
Trigger: CATGCCCACCACAGGCATCAATGAGTACTGCTTCTC...GGACATACCTCCCCCTGGTGGCCGCGCGTGGAACTGCAGGTCCAGGAGCTGCCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS CCA 90 bp CGGCCTCTGCGTCTCGCCGGGGTCCCTGGAAGCTGGGGAAGTATGTaGCCAGGTGGGAGGTGTGAATCTTATCTTCCAGGATGTCCGTCT +
Preference number: 5 (lower is better)
Translates to: RPLRLAGVPGSWGSM*PGGRCESYLPGCPS
Trigger: AGACGGACATCCTGGAAGATAAGATTCACACCTCCCACCTGGCCACATACTTCCCCAGCTTCCAGGGACCCCGGCGAGACGCAGAGGCCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 90 bp AGTCCAGAAGGTGGAATTCACGCCTTCGCTCGTAGCATGCACGGATaGCCGCGTCCCGCCACAGGTACTGCATGGCCACTGCATATGGCT +
Preference number: 5 (lower is better)
Translates to: SPEGGIHAFARSMHG*PRPATGTAWPLHMA
Trigger: AGCCATATGCAGTGGCCATGCAGTACCTGTGGCGGGACGCGGGCATCCGTGCATGCTACGAGCGAAGGCGTGAATTCCACCTTCTGGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CAA 90 bp CCTGGAACTCACAGAAATCCTCCTGCCTCTGCCTCCGGAGCGCTGGGGTTAAAGTCCAAGATGAAGCTCTaGGCGGCCTCTGCGTCTCGC +
Preference number: 5 (lower is better)
Translates to: PGTHRNPPASASGALGLKSKMKL*AASASR
Trigger: GCGAGACGCAGAGGCCGCCAAGAGCTTCATCTTGGA...CTTTAACCCCAGCGCTCCGGAGGCAGAGGCAGGAGGATTTCTGTGAGTTCCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 90 bp GCATGCACGGATGCCCGCGTCCCGCCACAGGTACTGCATGGCCACTaGATATGGCTTCTCGAATGTGCTCACTTTATAGGGGTCCTGGGT +
Preference number: 5 (lower is better)
Translates to: ACTDARVPPQVLHGH*IWLLECAHFIGVLG
Trigger: ACCCAGGACCCCTATAAAGTGAGCACATTCGAGAAGCCATATGCAGTGGCCATGCAGTACCTGTGGCGGGACGCGGGCATCCGTGCATGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CAA 90 bp TTGGTGGCAAGGCACTCTCACCAGCCATCTTGCCGACCTCGGTTTCCCCTTTGGATGACCGAGGTGCTCTaGAACCAGGGCAGCTCTAGG +
Preference number: 5 (lower is better)
Translates to: LVARHSHQPSCRPRFPLWMTEVL*NQGSSR
Trigger: CCTAGAGCTGCCCTGGTTCAAGAGCACCTCGGTCAT...CCAAAGGGGAAACCGAGGTCGGCAAGATGGCTGGTGAGAGTGCCTTGCCACCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS CCA 90 bp ACGGATGCCCGCGTCCCGCCACAGGTACTGCATGGCCACTGCATATaGCTTCTCGAATGTGCTCACTTTATAGGGGTCCTGGGTCATCAC +
Preference number: 5 (lower is better)
Translates to: TDARVPPQVLHGHCI*LLECAHFIGVLGHH
Trigger: GTGATGACCCAGGACCCCTATAAAGTGAGCACATTCGAGAAGCCATATGCAGTGGCCATGCAGTACCTGTGGCGGGACGCGGGCATCCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS CCA 90 bp GCTCGTAGCATGCACGGATGCCCGCGTCCCGCCACAGGTACTGCATaGCCACTGCATATGGCTTCTCGAATGTGCTCACTTTATAGGGGT +
Preference number: 5 (lower is better)
Translates to: ARSMHGCPRPATGTA*PLHMASRMCSLYRG
Trigger: ACCCCTATAAAGTGAGCACATTCGAGAAGCCATATGCAGTGGCCATGCAGTACCTGTGGCGGGACGCGGGCATCCGTGCATGCTACGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 90 bp CCCGCCACAGGTACTGCATGGCCACTGCATATGGCTTCTCGAATGTaGTCACTTTATAGGGGTCCTGGGTCATCACTAGGCTGGCGTGCT +
Preference number: 5 (lower is better)
Translates to: PATGTAWPLHMASRM*SLYRGPGSSLGWRA
Trigger: AGCACGCCAGCCTAGTGATGACCCAGGACCCCTATAAAGTGAGCACATTCGAGAAGCCATATGCAGTGGCCATGCAGTACCTGTGGCGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS-3UTR CAA 90 bp GACTCTCTCCCTGTGGGCTGGCTTCCCCACTTGGCAGCTCCTGGACCTGCAGTTTCCAACAAAATCCTGTaGATCTCCTGGTCGATTCTG +
Preference number: 5 (lower is better)
Translates to: DSLPVGWLPHLAAPGPAVSNKIL*ISWSIL
Trigger: CAGAATCGACCAGGAGATCAACAGGATTTTGTTGGA...AACTGCAGGTCCAGGAGCTGCCAAGTGGGGAAGCCAGCCCACAGGGAGAGAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 72 bp GCGGACGCTTTGCGTGTCCGTGGCACAGGTGAAGTGTaGGAAGAAGCGGCGCGCGCGGGAGCCTTTCCTGCC +
Preference number: 6 (lower is better)
Translates to: ADALRVRGTGEV*EEAARAGAFPA
Trigger: GGCAGGAAAGGCTCCCGCGCGCGCCGCTTCTTCGCACACTTCACCTGTGCCACGGACACGCAAAGCGTCCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS CAA 90 bp GGCCAGCACCGAGTCCCGCACGTCCTTGAACACGCTGCGGACGCTTaGCGTGTCCGTGGCACAGGTGAAGTGTGCGAAGAAGCGGCGCGC +
Preference number: 6 (lower is better)
Translates to: GQHRVPHVLEHAADA*RVRGTGEVCEEAAR
Trigger: GCGCGCCGCTTCTTCGCACACTTCACCTGTGCCACGGACACGCAAAGCGTCCGCAGCGTGTTCAAGGACGTGCGGGACTCGGTGCTGGCC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 72 bp GGTGGAATTCACGCCTTCGCTCGTAGCATGCACGGATaGCCGCGTCCCGCCACAGGTACTGCATGGCCACTG +
Preference number: 6 (lower is better)
Translates to: GGIHAFARSMHG*PRPATGTAWPL
Trigger: CAGTGGCCATGCAGTACCTGTGGCGGGACGCGGGCATCCGTGCATGCTACGAGCGAAGGCGTGAATTCCACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 72 bp GTCCAGAAGGTGGAATTCACGCCTTCGCTCGTAGCATaGACGGATGCCCGCGTCCCGCCACAGGTACTGCAT +
Preference number: 6 (lower is better)
Translates to: VQKVEFTPSLVA*TDARVPPQVLH
Trigger: ATGCAGTACCTGTGGCGGGACGCGGGCATCCGTGCATGCTACGAGCGAAGGCGTGAATTCCACCTTCTGGAC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 72 bp CGCATACATGTCCAAGATGAAGCTCTTGGCGGCCTCTaGGTCTCGCCGGGGTCCCTGGAAGCTGGGGAAGTA +
Preference number: 6 (lower is better)
Translates to: RIHVQDEALGGL*VSPGSLEAGEV
Trigger: TACTTCCCCAGCTTCCAGGGACCCCGGCGAGACGCAGAGGCCGCCAAGAGCTTCATCTTGGACATGTATGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 72 bp GAGTCCCGCACGTCCTTGAACACGCTGCGGACGCTTTaGGTGTCCGTGGCACAGGTGAAGTGTGCGAAGAAG +
Preference number: 6 (lower is better)
Translates to: ESRTSLNTLRTL*VSVAQVKCAKK
Trigger: CTTCTTCGCACACTTCACCTGTGCCACGGACACGCAAAGCGTCCGCAGCGTGTTCAAGGACGTGCGGGACTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS CCA 72 bp TGGTGGGCATGCGACTGCGCAGCACGTCTTGCGCAGTaGGGATGTAGCTGTCCTCTGATATGCGCTCCAGGT +
Preference number: 6 (lower is better)
Translates to: WWACDCAARLAQ*GCSCPLICAPG
Trigger: ACCTGGAGCGCATATCAGAGGACAGCTACATCCCCACTGCGCAAGACGTGCTGCGCAGTCGCATGCCCACCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS CAA 72 bp CGAGTCCCGCACGTCCTTGAACACGCTGCGGACGCTTaGCGTGTCCGTGGCACAGGTGAAGTGTGCGAAGAA +
Preference number: 6 (lower is better)
Translates to: RVPHVLEHAADA*RVRGTGEVCEE
Trigger: TTCTTCGCACACTTCACCTGTGCCACGGACACGCAAAGCGTCCGCAGCGTGTTCAAGGACGTGCGGGACTCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS CCA 72 bp CGTCTCGCCGGGGTCCCTGGAAGCTGGGGAAGTATGTaGCCAGGTGGGAGGTGTGAATCTTATCTTCCAGGA +
Preference number: 6 (lower is better)
Translates to: RLAGVPGSWGSM*PGGRCESYLPG
Trigger: TCCTGGAAGATAAGATTCACACCTCCCACCTGGCCACATACTTCCCCAGCTTCCAGGGACCCCGGCGAGACG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 72 bp GATGCCCGCGTCCCGCCACAGGTACTGCATGGCCACTaGATATGGCTTCTCGAATGTGCTCACTTTATAGGG +
Preference number: 6 (lower is better)
Translates to: DARVPPQVLHGH*IWLLECAHFIG
Trigger: CCCTATAAAGTGAGCACATTCGAGAAGCCATATGCAGTGGCCATGCAGTACCTGTGGCGGGACGCGGGCATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS CAA 72 bp CGCAGTTTGGTTTTCTTCACGGAGAAGCAGTACTCATaGATGCCTGTGGTGGGCATGCGACTGCGCAGCACG +
Preference number: 6 (lower is better)
Translates to: RSLVFFTEKQYS*MPVVGMRLRST
Trigger: CGTGCTGCGCAGTCGCATGCCCACCACAGGCATCAATGAGTACTGCTTCTCCGTGAAGAAAACCAAACTGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS TCA 72 bp GCAGTTTGGTTTTCTTCACGGAGAAGCAGTACTCATTaGTGCCTGTGGTGGGCATGCGACTGCGCAGCACGT +
Preference number: 6 (lower is better)
Translates to: AVWFSSRRSSTH*CLWWACDCAAR
Trigger: ACGTGCTGCGCAGTCGCATGCCCACCACAGGCATCAATGAGTACTGCTTCTCCGTGAAGAAAACCAAACTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS TCA 72 bp GGCACTGGTCATACTCGCTCAGGGAGGCCAGGTAGATaGGGGCAATCACGTTCTCGAAACAGTGAATCCATT +
Preference number: 6 (lower is better)
Translates to: GTGHTRSGRPGR*GQSRSRNSESI
Trigger: AATGGATTCACTGTTTCGAGAACGTGATTGCCCTCATCTACCTGGCCTCCCTGAGCGAGTATGACCAGTGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS GCA 72 bp GGTACTGCATGGCCACTGCATATGGCTTCTCGAATGTaGTCACTTTATAGGGGTCCTGGGTCATCACTAGGC +
Preference number: 6 (lower is better)
Translates to: GTAWPLHMASRM*SLYRGPGSSLG
Trigger: GCCTAGTGATGACCCAGGACCCCTATAAAGTGAGCACATTCGAGAAGCCATATGCAGTGGCCATGCAGTACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8
CDS CAA 72 bp TCTGACCTCTGGCCACCAACATCCACGATGCGCAGTTaGGTTTTCTTCACGGAGAAGCAGTACTCATTGATG +
Preference number: 6 (lower is better)
Translates to: SDLWPPTSTMRS*VFFTEKQYSLM
Trigger: CATCAATGAGTACTGCTTCTCCGTGAAGAAAACCAAACTGCGCATCGTGGATGTTGGTGGCCAGAGGTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000043709.8