Pregenerated sensors for GMFG (Mus musculus)

Ensembl gene IDs: ENSMUSG00000060791

Ensembl transcript IDs: ENSMUST00000078845.13, ENSMUST00000108289.8, ENSMUST00000108292.9, ENSMUST00000135686.2

Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TCTTCTGGGGAGATGTTCTGGAGTTCATCCTCCAGCACCACCATCTaGCGGTCTTTGTCCACTTTCATTATGATGGCGGCATTGTTGGTC	+
Preference number: 5 (lower is better) Translates to: SSGEMFWSSSSSTTI*RSLSTFIMMAALLV Trigger: GACCAACAATGCCGCCATCATAATGAAAGTGGACAAAGACCGGCAGATGGTGGTGCTGGAGGATGAACTCCAGAACATCTCCCCAGAAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078845.13 ENSMUST00000108292.9
CDS CCA 90 bp	TGTCTCTCTGGCAATTCCAACTTAAGTTCTTCTGGGGAGATGTTCTaGAGTTCATCCTCCAGCACCACCATCTGCCGGTCTTTGTCCACT	+
Preference number: 5 (lower is better) Translates to: CLSGNSNLSSSGEMF*SSSSSTTICRSLST Trigger: AGTGGACAAAGACCGGCAGATGGTGGTGCTGGAGGATGAACTCCAGAACATCTCCCCAGAAGAACTTAAGTTGGAATTGCCAGAGAGACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000078845.13 ENSMUST00000108292.9 ENSMUST00000135686.2
CDS GCA 72 bp	GAGATGTTCTGGAGTTCATCCTCCAGCACCACCATCTaGCGGTCTTTGTCCACTTTCATTATGATGGCGGCA	+
Preference number: 6 (lower is better) Translates to: EMFWSSSSSTTI*RSLSTFIMMAA Trigger: TGCCGCCATCATAATGAAAGTGGACAAAGACCGGCAGATGGTGGTGCTGGAGGATGAACTCCAGAACATCTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078845.13 ENSMUST00000108292.9
CDS GCA 72 bp	GTGCGGATTTCAAACACCTTGGTAAGCTCCGCCGTCTaGACCAGCCTGTTTTTACTTCCTGCGTACATCATC	+
Preference number: 6 (lower is better) Translates to: VRISNTLVSSAV*TSLFLLPAYII Trigger: GATGATGTACGCAGGAAGTAAAAACAGGCTGGTGCAGACGGCGGAGCTTACCAAGGTGTTTGAAATCCGCAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000078845.13 ENSMUST00000108289.8 ENSMUST00000108292.9
CDS CAA 72 bp	TGGAGTTCATCCTCCAGCACCACCATCTGCCGGTCTTaGTCCACTTTCATTATGATGGCGGCATTGTTGGTC	+
Preference number: 6 (lower is better) Translates to: WSSSSSTTICRS*STFIMMAALLV Trigger: GACCAACAATGCCGCCATCATAATGAAAGTGGACAAAGACCGGCAGATGGTGGTGCTGGAGGATGAACTCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000078845.13 ENSMUST00000108292.9
CDS CAA 72 bp	TGCCGGTCTTTGTCCACTTTCATTATGATGGCGGCATaGTTGGTCTCTTTTCGGAAACGAAATTTCCTCAAT	+
Preference number: 6 (lower is better) Translates to: CRSLSTFIMMAA*LVSFRKRNFLN Trigger: ATTGAGGAAATTTCGTTTCCGAAAAGAGACCAACAATGCCGCCATCATAATGAAAGTGGACAAAGACCGGCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000078845.13 ENSMUST00000108292.9

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