Pregenerated sensors for GMFB (Mus musculus)
Ensembl gene IDs: ENSMUSG00000062014Ensembl transcript IDs: ENSMUST00000079314.12, ENSMUST00000111817.8, ENSMUST00000226333.2, ENSMUST00000226937.2
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AGCCTTGGTTACCCTGGAACTTGCTTCTGCAGACCAGGCTGGTCTTaGACTCAGAGATCTGCCTGTCTCTGCCTCCCAAATGCCAGGATT | + |
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Preference number: 1 (lower is better) Translates to: SLGYPGTCFCRPGWS*TQRSACLCLPNARI Trigger: AATCCTGGCATTTGGGAGGCAGAGACAGGCAGATCTCTGAGTTCAAGACCAGCCTGGTCTGCAGAAGCAAGTTCCAGGGTAACCAAGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR GCA 90 bp | CGCAATGATGTGACAGGTGATAAAATGCTACTTGCACTTATAAACTaGCAGTACCCAGGAGTGGTCAGAGGAGGAACTGTTGTCTATCAC | + |
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Preference number: 1 (lower is better) Translates to: RNDVTGDKMLLALIN*QYPGVVRGGTVVYH Trigger: GTGATAGACAACAGTTCCTCCTCTGACCACTCCTGGGTACTGGCAGTTTATAAGTGCAAGTAGCATTTTATCACCTGTCACATCATTGCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR TCA 90 bp | TTTTCTTGCTCTCTGGACACTGAAATAAAGGGACTTTTCCATTCATaGACCAATATGATCACCTCCTCTAGCACTTGCAATTGCTTCCTG | + |
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Preference number: 1 (lower is better) Translates to: FSCSLDTEIKGLFHS*TNMITSSSTCNCFL Trigger: CAGGAAGCAATTGCAAGTGCTAGAGGAGGTGATCATATTGGTTCATGAATGGAAAAGTCCCTTTATTTCAGTGTCCAGAGAGCAAGAAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR GCA 90 bp | TGCTATGCACAACTTAGTAAGATCAGAAATTTCCAAAGCAATGCTTaGTTAAAAGGTTCCCGGGAAGAGTGGCTTCCAAAAAGGAAAGAT | + |
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Preference number: 1 (lower is better) Translates to: CYAQLSKIRNFQSNA*LKGSREEWLPKRKD Trigger: ATCTTTCCTTTTTGGAAGCCACTCTTCCCGGGAACCTTTTAAGCAAGCATTGCTTTGGAAATTTCTGATCTTACTAAGTTGTGCATAGCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR GCA 90 bp | TCTCCTACAAGAGAATGTTTCTCTCACAGGACGAGAATGTTTAACTaGGCTAAGCATCCAGTAAACTCCTCAGACAATTCAAACATAGTT | + |
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Preference number: 1 (lower is better) Translates to: SPTRECFSHRTRMFN*AKHPVNSSDNSNIV Trigger: AACTATGTTTGAATTGTCTGAGGAGTTTACTGGATGCTTAGCGCAGTTAAACATTCTCGTCCTGTGAGAGAAACATTCTCTTGTAGGAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR TCA 90 bp | GAAGTCCTAAACTTCTTAGATGAAGTTTTCTTGCTCTCTGGACACTaGAATAAAGGGACTTTTCCATTCATGAACCAATATGATCACCTC | + |
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Preference number: 1 (lower is better) Translates to: EVLNFLDEVFLLSGH*NKGTFPFMNQYDHL Trigger: GAGGTGATCATATTGGTTCATGAATGGAAAAGTCCCTTTATTTCAGTGTCCAGAGAGCAAGAAAACTTCATCTAAGAAGTTTAGGACTTC 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR TCA 90 bp | GGATGTGTCTGCTCACTAGTTTACATACAGATTAATGTAGTCACTTaGGTTTTACAAGTGTCCAAACATTTCTTATGTGCAGCTTTCTTA | + |
|
Preference number: 1 (lower is better) Translates to: GCVCSLVYIQINVVT*VLQVSKHFLCAAFL Trigger: TAAGAAAGCTGCACATAAGAAATGTTTGGACACTTGTAAAACTCAAGTGACTACATTAATCTGTATGTAAACTAGTGAGCAGACACATCC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR GCA 90 bp | CAAGAAATATTCAGCTCAGAACCATCAGCACGAGGAGGCCTAGGAGACATCTACGGTTACCCTGGAACTTaGTTCTGCAGACCAGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: QEIFSSEPSARGGLGDIYGYPGT*FCRPGW Trigger: CCAGCCTGGTCTGCAGAAGCAAGTTCCAGGGTAACC...GTAGATGTCTCCTAGGCCTCCTCGTGCTGATGGTTCTGAGCTGAATATTTCTTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR GCA 90 bp | GAAATATTCAGCTCAGAACCATCAGCACGAGGAGGCCTAGGAGACATCTACATTGGTTACCCTGGAACTTaGTTCTGCAGACCAGGCTGG | + |
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Preference number: 2 (lower is better) Translates to: EIFSSEPSARGGLGDIYIGYPGT*FCRPGW Trigger: CCAGCCTGGTCTGCAGAAGCAAGTTCCAGGGTAACC...AATGTAGATGTCTCCTAGGCCTCCTCGTGCTGATGGTTCTGAGCTGAATATTTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR TCA 90 bp | CAAGAAATATTCAGCTCAGAACCATCAGCACGAGGAGGCCTAGGAGACATCTACAGAGTCAGACAAGCTTaGAAAGGAAAGCTGCTCACC | + |
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Preference number: 2 (lower is better) Translates to: QEIFSSEPSARGGLGDIYRVRQA*KGKLLT Trigger: GGTGAGCAGCTTTCCTTTTCAAGCTTGTCTGACTCT...GTAGATGTCTCCTAGGCCTCCTCGTGCTGATGGTTCTGAGCTGAATATTTCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR GCA 90 bp | GAAAGCTGCTCACCACTGGTGTTGCTGCTTGAACTAGAGACTAAGAGTCCTGTGACCTCCTCTAGCACTTaGAATTGCTTCCTGACATAC | + |
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Preference number: 2 (lower is better) Translates to: ESCSPLVLLLELETKSPVTSSST*NCFLTY Trigger: GTATGTCAGGAAGCAATTGCAAGTGCTAGAGGAGGT...CACAGGACTCTTAGTCTCTAGTTCAAGCAGCAACACCAGTGGTGAGCAGCTTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CCA 90 bp | ATCAGAAATTTCCAAAGCAATGCTTGCTTAAAAGGTTCCCGGGAAGAGTGGCTTGCCAGTACCCAGGAGTaGTCAGAGGAGGAACTGTTG | + |
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Preference number: 2 (lower is better) Translates to: IRNFQSNACLKGSREEWLASTQE*SEEELL Trigger: CAACAGTTCCTCCTCTGACCACTCCTGGGTACTGGC...AAGCCACTCTTCCCGGGAACCTTTTAAGCAAGCATTGCTTTGGAAATTTCTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR TCA 90 bp | TTCTCTCACAGGACGAGAATGTTTAACTGCGCTAAGCATCCAGTAAACTCCTCATTGCTCTCTGGACACTaGAATAAAGGGACTTTTCCA | + |
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Preference number: 2 (lower is better) Translates to: FSHRTRMFNCAKHPVNSSLLSGH*NKGTFP Trigger: TGGAAAAGTCCCTTTATTTCAGTGTCCAGAGAGCAA...TGAGGAGTTTACTGGATGCTTAGCGCAGTTAAACATTCTCGTCCTGTGAGAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR TCA 90 bp | GAAATATTCAGCTCAGAACCATCAGCACGAGGAGGCCTAGGAGACATCTACATTGTCACCAAAACCACATaGCATATACATTGTGATTCC | + |
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Preference number: 2 (lower is better) Translates to: EIFSSEPSARGGLGDIYIVTKTT*HIHCDS Trigger: GGAATCACAATGTATATGTCATGTGGTTTTGGTGAC...AATGTAGATGTCTCCTAGGCCTCCTCGTGCTGATGGTTCTGAGCTGAATATTTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CCA 90 bp | GAAAGCTGCTCACCACTGGTGTTGCTGCTTGAACTAGAGACTAAGAGTCCTGTGTCATCTGCATTCCTGTaGGATTATAAGCAAGTTATT | + |
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Preference number: 2 (lower is better) Translates to: ESCSPLVLLLELETKSPVSSAFL*DYKQVI Trigger: AATAACTTGCTTATAATCCCACAGGAATGCAGATGA...CACAGGACTCTTAGTCTCTAGTTCAAGCAGCAACACCAGTGGTGAGCAGCTTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR GCA 90 bp | TTCTTTTTAGGGGAGCAGGGTGTTCATCTGTTTAGCCTTGGTTACCCTGGAACTGATTCTACACTTGATTaGAAAGATACAGGAACCCAA | + |
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Preference number: 2 (lower is better) Translates to: FFLGEQGVHLFSLGYPGTDSTLD*KDTGTQ Trigger: TTGGGTTCCTGTATCTTTGCAATCAAGTGTAGAATC...AGTTCCAGGGTAACCAAGGCTAAACAGATGAACACCCTGCTCCCCTAAAAAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR GCA 90 bp | GAAATATTCAGCTCAGAACCATCAGCACGAGGAGGCCTAGGAGACATCTACATTGGATTAAATGTTATGTaGCACCAATGCCCAATCAAA | + |
|
Preference number: 2 (lower is better) Translates to: EIFSSEPSARGGLGDIYIGLNVM*HQCPIK Trigger: TTTGATTGGGCATTGGTGGCACATAACATTTAATCC...AATGTAGATGTCTCCTAGGCCTCCTCGTGCTGATGGTTCTGAGCTGAATATTTC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR GCA 90 bp | TTCTTTTTAGGGGAGCAGGGTGTTCATCTGTTTAGCCTTGGTTACCCTGGAACTGGATTAAATGTTATGTaGCACCAATGCCCAATCAAA | + |
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Preference number: 2 (lower is better) Translates to: FFLGEQGVHLFSLGYPGTGLNVM*HQCPIK Trigger: TTTGATTGGGCATTGGTGGCACATAACATTTAATCC...AGTTCCAGGGTAACCAAGGCTAAACAGATGAACACCCTGCTCCCCTAAAAAGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR GCA 90 bp | TGGCAGGTCAGGGCCATTCACTCTATGAAAGACTTGGAAATTTCAAAAACTGATACCTCCTCTAGCACTTaGAATTGCTTCCTGACATAC | + |
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Preference number: 2 (lower is better) Translates to: WQVRAIHSMKDLEISKTDTSSST*NCFLTY Trigger: GTATGTCAGGAAGCAATTGCAAGTGCTAGAGGAGGT...ATCAGTTTTTGAAATTTCCAAGTCTTTCATAGAGTGAATGGCCCTGACCTGCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR GCA 90 bp | TTCTCTCACAGGACGAGAATGTTTAACTGCGCTAAGCATCCAGTAAACTCCTCAAAACGAACCCTTATGTaGATCAGTCAGAGACATCAA | + |
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Preference number: 2 (lower is better) Translates to: FSHRTRMFNCAKHPVNSSKRTLM*ISQRHQ Trigger: TTGATGTCTCTGACTGATGCACATAAGGGTTCGTTT...TGAGGAGTTTACTGGATGCTTAGCGCAGTTAAACATTCTCGTCCTGTGAGAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CCA 90 bp | CAAGAAATATTCAGCTCAGAACCATCAGCACGAGGAGGCCTAGGAGACATCTACTCATCTGCATTCCTGTaGGATTATAAGCAAGTTATT | + |
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Preference number: 2 (lower is better) Translates to: QEIFSSEPSARGGLGDIYSSAFL*DYKQVI Trigger: AATAACTTGCTTATAATCCCACAGGAATGCAGATGA...GTAGATGTCTCCTAGGCCTCCTCGTGCTGATGGTTCTGAGCTGAATATTTCTTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR GCA 90 bp | ATCAGAAATTTCCAAAGCAATGCTTGCTTAAAAGGTTCCCGGGAAGAGTGGCTTAAACGAACCCTTATGTaGATCAGTCAGAGACATCAA | + |
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Preference number: 2 (lower is better) Translates to: IRNFQSNACLKGSREEWLKRTLM*ISQRHQ Trigger: TTGATGTCTCTGACTGATGCACATAAGGGTTCGTTT...AAGCCACTCTTCCCGGGAACCTTTTAAGCAAGCATTGCTTTGGAAATTTCTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR CAA 90 bp | GAGTCCTGTGTGTGGCAGGTCAGGGCCATTCACTCTATGAAAGACTaGGAAATTTCAAAAACTGATTTAAATATGCAAGCCAAAATAAAG | + |
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Preference number: 2 (lower is better) Translates to: ESCVWQVRAIHSMKD*EISKTDLNMQAKIK Trigger: CTTTATTTTGGCTTGCATATTTAAATCAGTTTTTGAAATTTCCAAGTCTTTCATAGAGTGAATGGCCCTGACCTGCCACACACAGGACTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CCA 90 bp | ATCAGAAATTTCCAAAGCAATGCTTGCTTAAAAGGTTCCCGGGAAGAGTGGCTTTGGAATTATGAAATCTaGACATACTCTTTACGGAAC | + |
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Preference number: 2 (lower is better) Translates to: IRNFQSNACLKGSREEWLWNYEI*TYSLRN Trigger: GTTCCGTAAAGAGTATGTCCAGATTTCATAATTCCA...AAGCCACTCTTCCCGGGAACCTTTTAAGCAAGCATTGCTTTGGAAATTTCTGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CCA 90 bp | ACATTTCTTATGTGCAGCTTTCTTAGTTTCTATCTAAGTGGGAAAAGAGCCAAGACTGGAAACCATTTGTaGAAGTGTCAGACCAGGATT | + |
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Preference number: 2 (lower is better) Translates to: TFLMCSFLSFYLSGKRAKTGNHL*KCQTRI Trigger: AATCCTGGTCTGACACTTCCACAAATGGTTTCCAGT...CTTGGCTCTTTTCCCACTTAGATAGAAACTAAGAAAGCTGCACATAAGAAATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR TCA 90 bp | ACATTTCTTATGTGCAGCTTTCTTAGTTTCTATCTAAGTGGGAAAAGAGCCAAGGTCACCAAAACCACATaGCATATACATTGTGATTCC | + |
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Preference number: 2 (lower is better) Translates to: TFLMCSFLSFYLSGKRAKVTKTT*HIHCDS Trigger: GGAATCACAATGTATATGTCATGTGGTTTTGGTGAC...CTTGGCTCTTTTCCCACTTAGATAGAAACTAAGAAAGCTGCACATAAGAAATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CCA 90 bp | ACATTTCTTATGTGCAGCTTTCTTAGTTTCTATCTAAGTGGGAAAAGAGCCAAGCCAGGATTCAGTTTATaGCTAAGTTTGTCTCCTGAA | + |
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Preference number: 2 (lower is better) Translates to: TFLMCSFLSFYLSGKRAKPGFSL*LSLSPE Trigger: TTCAGGAGACAAACTTAGCCATAAACTGAATCCTGG...CTTGGCTCTTTTCCCACTTAGATAGAAACTAAGAAAGCTGCACATAAGAAATGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR TCA 72 bp | TACCCTGGAACTTGCTTCTGCAGACCAGGCTGGTCTTaGACTCAGAGATCTGCCTGTCTCTGCCTCCCAAAT | + |
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Preference number: 3 (lower is better) Translates to: YPGTCFCRPGWS*TQRSACLCLPN Trigger: ATTTGGGAGGCAGAGACAGGCAGATCTCTGAGTTCAAGACCAGCCTGGTCTGCAGAAGCAAGTTCCAGGGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CAA 90 bp | GAAAGCTGCTCACCACTGGTGTTGCTGCTTGAACTAGAGACTAAGAGTCCTGTGCTAGTGAGCACACAGTaGGGAATACAACACACTCCA | + |
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Preference number: 3 (lower is better) Translates to: ESCSPLVLLLELETKSPVLVSTQ*GIQHTP Trigger: TGGAGTGTGTTGTATTCCCAACTGTGTGCTCACTAG...CACAGGACTCTTAGTCTCTAGTTCAAGCAGCAACACCAGTGGTGAGCAGCTTTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR CCA 72 bp | TTGCAAAGATACAGGAACCCAAGAGAGGAGGAAAACTaGCGGAGAGTTCAACAGAGGTCCCACTACATCTCT | + |
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Preference number: 3 (lower is better) Translates to: LQRYRNPREEEN*RRVQQRSHYIS Trigger: AGAGATGTAGTGGGACCTCTGTTGAACTCTCCGCCAGTTTTCCTCCTCTCTTGGGTTCCTGTATCTTTGCAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CAA 90 bp | TGGCAGGTCAGGGCCATTCACTCTATGAAAGACTTGGAAATTTCAAAAACTGATCAGACCAGGCTGGTCTaGAACTCAGAGATCTGCCTG | + |
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Preference number: 3 (lower is better) Translates to: WQVRAIHSMKDLEISKTDQTRLV*NSEICL Trigger: CAGGCAGATCTCTGAGTTCAAGACCAGCCTGGTCTG...ATCAGTTTTTGAAATTTCCAAGTCTTTCATAGAGTGAATGGCCCTGACCTGCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR GCA 72 bp | GTGACAGGTGATAAAATGCTACTTGCACTTATAAACTaGCAGTACCCAGGAGTGGTCAGAGGAGGAACTGTT | + |
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Preference number: 3 (lower is better) Translates to: VTGDKMLLALIN*QYPGVVRGGTV Trigger: AACAGTTCCTCCTCTGACCACTCCTGGGTACTGGCAGTTTATAAGTGCAAGTAGCATTTTATCACCTGTCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR CCA 72 bp | GTGCATCAGTCAGAGACATCAAAGTCCCCCTTTACTTaGGTCTCATCTGCATTCCTGTGGGATTATAAGCAA | + |
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Preference number: 3 (lower is better) Translates to: VHQSETSKSPFT*VSSAFLWDYKQ Trigger: TTGCTTATAATCCCACAGGAATGCAGATGAGACCCAAGTAAAGGGGGACTTTGATGTCTCTGACTGATGCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CAA 90 bp | ACATTTCTTATGTGCAGCTTTCTTAGTTTCTATCTAAGTGGGAAAAGAGCCAAGCAGACCAGGCTGGTCTaGAACTCAGAGATCTGCCTG | + |
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Preference number: 3 (lower is better) Translates to: TFLMCSFLSFYLSGKRAKQTRLV*NSEICL Trigger: CAGGCAGATCTCTGAGTTCAAGACCAGCCTGGTCTG...CTTGGCTCTTTTCCCACTTAGATAGAAACTAAGAAAGCTGCACATAAGAAATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CAA 90 bp | TTCTTTTTAGGGGAGCAGGGTGTTCATCTGTTTAGCCTTGGTTACCCTGGAACTAGTAGATTAGAAATCTaGCTTCCTGATGATGGTGTC | + |
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Preference number: 3 (lower is better) Translates to: FFLGEQGVHLFSLGYPGTSRLEI*LPDDGV Trigger: GACACCATCATCAGGAAGCAAGATTTCTAATCTACT...AGTTCCAGGGTAACCAAGGCTAAACAGATGAACACCCTGCTCCCCTAAAAAGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CAA 90 bp | TTCTCTCACAGGACGAGAATGTTTAACTGCGCTAAGCATCCAGTAAACTCCTCAAGTAGATTAGAAATCTaGCTTCCTGATGATGGTGTC | + |
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Preference number: 3 (lower is better) Translates to: FSHRTRMFNCAKHPVNSSSRLEI*LPDDGV Trigger: GACACCATCATCAGGAAGCAAGATTTCTAATCTACT...TGAGGAGTTTACTGGATGCTTAGCGCAGTTAAACATTCTCGTCCTGTGAGAGAA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR GCA 72 bp | AGAGAATGTTTCTCTCACAGGACGAGAATGTTTAACTaGGCTAAGCATCCAGTAAACTCCTCAGACAATTCA | + |
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Preference number: 3 (lower is better) Translates to: RECFSHRTRMFN*AKHPVNSSDNS Trigger: TGAATTGTCTGAGGAGTTTACTGGATGCTTAGCGCAGTTAAACATTCTCGTCCTGTGAGAGAAACATTCTCT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CAA 90 bp | ACATTTCTTATGTGCAGCTTTCTTAGTTTCTATCTAAGTGGGAAAAGAGCCAAGCCAAGAACGAAGCCCTaGATTATAGAGCTCCCAGTT | + |
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Preference number: 3 (lower is better) Translates to: TFLMCSFLSFYLSGKRAKPRTKP*IIELPV Trigger: AACTGGGAGCTCTATAATCAAGGGCTTCGTTCTTGG...CTTGGCTCTTTTCCCACTTAGATAGAAACTAAGAAAGCTGCACATAAGAAATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CAA 90 bp | ATCAGAAATTTCCAAAGCAATGCTTGCTTAAAAGGTTCCCGGGAAGAGTGGCTTACAGGACTTACAAACTaGTCTAAGGACAGACAGAAT | + |
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Preference number: 3 (lower is better) Translates to: IRNFQSNACLKGSREEWLTGLTN*SKDRQN Trigger: ATTCTGTCTGTCCTTAGACAAGTTTGTAAGTCCTGT...AAGCCACTCTTCCCGGGAACCTTTTAAGCAAGCATTGCTTTGGAAATTTCTGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR-3UTR CAA 90 bp | ACATTTCTTATGTGCAGCTTTCTTAGTTTCTATCTAAGTGGGAAAAGAGCCAAGCATGTGTCACTCATGTaGTCACCAAAACCACATGAC | + |
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Preference number: 3 (lower is better) Translates to: TFLMCSFLSFYLSGKRAKHVSLM*SPKPHD Trigger: GTCATGTGGTTTTGGTGACAACATGAGTGACACATG...CTTGGCTCTTTTCCCACTTAGATAGAAACTAAGAAAGCTGCACATAAGAAATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR TCA 72 bp | AATTGTCCTAACATTACAGGAGTAGGATCACTGATCTaGAGTGTCACATGGCCTACCAAGAAATATTCAGCT | + |
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Preference number: 3 (lower is better) Translates to: NCPNITGVGSLI*SVTWPTKKYSA Trigger: AGCTGAATATTTCTTGGTAGGCCATGTGACACTTCAGATCAGTGATCCTACTCCTGTAATGTTAGGACAATT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR GCA 72 bp | CAACTTAGTAAGATCAGAAATTTCCAAAGCAATGCTTaGTTAAAAGGTTCCCGGGAAGAGTGGCTTCCAAAA | + |
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Preference number: 3 (lower is better) Translates to: QLSKIRNFQSNA*LKGSREEWLPK Trigger: TTTTGGAAGCCACTCTTCCCGGGAACCTTTTAAGCAAGCATTGCTTTGGAAATTTCTGATCTTACTAAGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR TCA 72 bp | TCATGTTGTCACCAAAACCACATGACATATACATTGTaGTTCCTAGTCGGTTCTGACATTAGATGCTATGCA | + |
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Preference number: 3 (lower is better) Translates to: SCCHQNHMTYTL*FLVGSDIRCYA Trigger: TGCATAGCATCTAATGTCAGAACCGACTAGGAATCACAATGTATATGTCATGTGGTTTTGGTGACAACATGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR TCA 72 bp | TACCATAAAAATCAACTTCCGGACCTTAAGGAGGAGTaGTTGATGAAGATTCTACACTTGATTGCAAAGATA | + |
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Preference number: 3 (lower is better) Translates to: YHKNQLPDLKEE*LMKILHLIAKI Trigger: TATCTTTGCAATCAAGTGTAGAATCTTCATCAATCACTCCTCCTTAAGGTCCGGAAGTTGATTTTTATGGTA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR TCA 72 bp | AACTTCTTAGATGAAGTTTTCTTGCTCTCTGGACACTaGAATAAAGGGACTTTTCCATTCATGAACCAATAT | + |
|
Preference number: 3 (lower is better) Translates to: NFLDEVFLLSGH*NKGTFPFMNQY Trigger: ATATTGGTTCATGAATGGAAAAGTCCCTTTATTTCAGTGTCCAGAGAGCAAGAAAACTTCATCTAAGAAGTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR GCA 72 bp | CCCAAATATTGGCATTTCAATTCTTATGGATGTGTCTaGTCACTAGTTTACATACAGATTAATGTAGTCACT | + |
|
Preference number: 3 (lower is better) Translates to: PKYWHFNSYGCV*SLVYIQINVVT Trigger: AGTGACTACATTAATCTGTATGTAAACTAGTGAGCAGACACATCCATAAGAATTGAAATGCCAATATTTGGG 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| 3UTR CAA 72 bp | TTACCCTGGAACTTGCTTCTGCAGACCAGGCTGGTCTaGAACTCAGAGATCTGCCTGTCTCTGCCTCCCAAA | + |
|
Preference number: 4 (lower is better) Translates to: LPWNLLLQTRLV*NSEICLSLPPK Trigger: TTTGGGAGGCAGAGACAGGCAGATCTCTGAGTTCAAGACCAGCCTGGTCTGCAGAAGCAAGTTCCAGGGTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| CDS-3UTR GCA 90 bp | GAAAGCTGCTCACCACTGGTGTTGCTGCTTGAACTAGAGACTAAGAGTCCTGTGGCGTACATCATCTGCTaGTCAGGCTTACACCCGACA | + |
|
Preference number: 4 (lower is better) Translates to: ESCSPLVLLLELETKSPVAYIIC*SGLHPT Trigger: TGTCGGGTGTAAGCCTGAGCAGCAGATGATGTACGC...CACAGGACTCTTAGTCTCTAGTTCAAGCAGCAACACCAGTGGTGAGCAGCTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| CDS-3UTR GCA 90 bp | TGCAAAGCATCCCTGGAGAAAAGTAGTCCCCCTAACAATGACAGATGCAGGAACCCAGCGTACATCATCTaGTGCTCAGGCTTACACCCG | + |
|
Preference number: 4 (lower is better) Translates to: CKASLEKSSPPNNDRCRNPAYII*CSGLHP Trigger: CGGGTGTAAGCCTGAGCAGCAGATGATGTACGCTGG...GTTCCTGCATCTGTCATTGTTAGGGGGACTACTTTTCTCCAGGGATGCTTTGCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 ENSMUST00000226333.2 ENSMUST00000226937.2 |
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| CDS-3UTR GCA 90 bp | CCAAGAGAGGAGGAAAACTGGCGGAGAGTTCAACAGAGGTCCCACTACATCTCTGCGGGTACGAGACTCTaGCATCATCATGTTGGTATT | + |
|
Preference number: 4 (lower is better) Translates to: PREEENWRRVQQRSHYISAGTRL*HHHVGI Trigger: AATACCAACATGATGATGGCAGAGTCTCGTACCCGC...AGAGATGTAGTGGGACCTCTGTTGAACTCTCCGCCAGTTTTCCTCCTCTCTTGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| CDS-3UTR GCA 90 bp | GCAAAGCATCCCTGGAGAAAAGTAGTCCCCCTAACAATGACAGATGCAGGAACAAAAGGATATCGAGGCTaGCGCTCGGGTAGTTCGTCT | + |
|
Preference number: 4 (lower is better) Translates to: AKHPWRKVVPLTMTDAGTKGYRG*RSGSSS Trigger: AGACGAACTACCCGAGCGGCAGCCTCGATATCCTTT...TGTTCCTGCATCTGTCATTGTTAGGGGGACTACTTTTCTCCAGGGATGCTTTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000226333.2 |
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| CDS-3UTR TCA 90 bp | ACTTGCACTTATAAACTGCCAGTACCCAGGAGTGGTCAGAGGAGGAACTGTTGTTATAACTATACACAATaGAGCGAGGCTGCCGCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: TCTYKLPVPRSGQRRNCCYNYTQ*SEAAAR Trigger: CCGAGCGGCAGCCTCGCTTCATTGTGTATAGTTATA...ACAACAGTTCCTCCTCTGACCACTCCTGGGTACTGGCAGTTTATAAGTGCAAGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111817.8 |
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| CDS-3UTR TCA 90 bp | GCAAAGCATCCCTGGAGAAAAGTAGTCCCCCTAACAATGACAGATGCAGGAACATATAACTATACACAATaGAGCGAGGCTGCCGCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: AKHPWRKVVPLTMTDAGTYNYTQ*SEAAAR Trigger: CCGAGCGGCAGCCTCGCTTCATTGTGTATAGTTATA...TGTTCCTGCATCTGTCATTGTTAGGGGGACTACTTTTCTCCAGGGATGCTTTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000111817.8 ENSMUST00000226937.2 |
||
| CDS-3UTR GCA 90 bp | TTCTTTTTAGGGGAGCAGGGTGTTCATCTGTTTAGCCTTGGTTACCCTGGAACTGCGTACATCATCTGCTaGTCAGGCTTACACCCGACA | + |
|
Preference number: 4 (lower is better) Translates to: FFLGEQGVHLFSLGYPGTAYIIC*SGLHPT Trigger: TGTCGGGTGTAAGCCTGAGCAGCAGATGATGTACGC...AGTTCCAGGGTAACCAAGGCTAAACAGATGAACACCCTGCTCCCCTAAAAAGAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
||
| CDS-3UTR GCA 90 bp | CCCCCTAACAATGACAGATGCAGGAACACTTCACAACGTCTCATTACTATGAAGCCAGCGTACATCATCTaGTGCTCAGGCTTACACCCG | + |
|
Preference number: 4 (lower is better) Translates to: PPNNDRCRNTSQRLITMKPAYII*CSGLHP Trigger: CGGGTGTAAGCCTGAGCAGCAGATGATGTACGCTGG...CTTCATAGTAATGAGACGTTGTGAAGTGTTCCTGCATCTGTCATTGTTAGGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 ENSMUST00000226333.2 ENSMUST00000226937.2 |
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| 3UTR CAA 72 bp | ACAAACGACCCATCTACAGGTAAGAGTCAGACAAGCTaGAAAAGGAAAGCTGCTCACCACTGGTGTTGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: TNDPSTGKSQTS*KRKAAHHWCCC Trigger: GCAGCAACACCAGTGGTGAGCAGCTTTCCTTTTCAAGCTTGTCTGACTCTTACCTGTAGATGGGTCGTTTGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
||
| CDS-3UTR TCA 90 bp | CAAGAAATATTCAGCTCAGAACCATCAGCACGAGGAGGCCTAGGAGACATCTACTATAACTATACACAATaGATCGAGGCTGCCGCTCGG | + |
|
Preference number: 4 (lower is better) Translates to: QEIFSSEPSARGGLGDIYYNYTQ*IEAAAR Trigger: CCGAGCGGCAGCCTCGATTCATTGTGTATAGTTATA...GTAGATGTCTCCTAGGCCTCCTCGTGCTGATGGTTCTGAGCTGAATATTTCTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079314.12 |
||
| CDS-3UTR GCA 90 bp | GCAAAGCATCCCTGGAGAAAAGTAGTCCCCCTAACAATGACAGATGCAGGAACAGCGGGTACGAGACTCTaGCATCATCATGTTGGTATT | + |
|
Preference number: 4 (lower is better) Translates to: AKHPWRKVVPLTMTDAGTAGTRL*HHHVGI Trigger: AATACCAACATGATGATGGCAGAGTCTCGTACCCGC...TGTTCCTGCATCTGTCATTGTTAGGGGGACTACTTTTCTCCAGGGATGCTTTGC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 ENSMUST00000226333.2 ENSMUST00000226937.2 |
||
| CDS-3UTR GCA 90 bp | AAAAGTAGTCCCCCTAACAATGACAGATGCAGGAACACTTCACAACGTCTCATTCCAGCGTACATCATCTaGTGCTCAGGCTTACACCCG | + |
|
Preference number: 4 (lower is better) Translates to: KSSPPNNDRCRNTSQRLIPAYII*CSGLHP Trigger: CGGGTGTAAGCCTGAGCAGCAGATGATGTACGCTGG...AATGAGACGTTGTGAAGTGTTCCTGCATCTGTCATTGTTAGGGGGACTACTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 ENSMUST00000226333.2 ENSMUST00000226937.2 |
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| CDS-3UTR CCA 90 bp | ACTTGCACTTATAAACTGCCAGTACCCAGGAGTGGTCAGAGGAGGAACTGTTGTGTCTTTAAGTTCATCTaGAGAGACACCCTCGAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: TCTYKLPVPRSGQRRNCCVFKFI*RDTLEL Trigger: GAGCTCGAGGGTGTCTCTCCAGATGAACTTAAAGAC...ACAACAGTTCCTCCTCTGACCACTCCTGGGTACTGGCAGTTTATAAGTGCAAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
||
| CDS-3UTR GCA 90 bp | ATCAGAAATTTCCAAAGCAATGCTTGCTTAAAAGGTTCCCGGGAAGAGTGGCTTGCGGGTACGAGACTCTaGCATCATCATGTTGGTATT | + |
|
Preference number: 4 (lower is better) Translates to: IRNFQSNACLKGSREEWLAGTRL*HHHVGI Trigger: AATACCAACATGATGATGGCAGAGTCTCGTACCCGC...AAGCCACTCTTCCCGGGAACCTTTTAAGCAAGCATTGCTTTGGAAATTTCTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| CDS-3UTR CCA 90 bp | ACTTGCACTTATAAACTGCCAGTACCCAGGAGTGGTCAGAGGAGGAACTGTTGTTTATTTCAAATACCTTaGTTAGCTCGGCAGTCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: TCTYKLPVPRSGQRRNCCLFQIP*LARQSG Trigger: TCCAGACTGCCGAGCTAACCAAGGTATTTGAAATAA...ACAACAGTTCCTCCTCTGACCACTCCTGGGTACTGGCAGTTTATAAGTGCAAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
||
| CDS-3UTR CCA 90 bp | CAAAGATACAGGAACCCAAGAGAGGAGGAAAACTGGCGGAGAGTTCAACAGAGGATAATAGCAGCATTGTaGGTTTCTTTTCGAAAACGA | + |
|
Preference number: 4 (lower is better) Translates to: QRYRNPREEENWRRVQQRIIAAL*VSFRKR Trigger: TCGTTTTCGAAAAGAAACCCACAATGCTGCTATTAT...CCTCTGTTGAACTCTCCGCCAGTTTTCCTCCTCTCTTGGGTTCCTGTATCTTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
||
| CDS-3UTR CCA 90 bp | TGGCAGGTCAGGGCCATTCACTCTATGAAAGACTTGGAAATTTCAAAAACTGATGTCTTTAAGTTCATCTaGAGAGACACCCTCGAGCTC | + |
|
Preference number: 4 (lower is better) Translates to: WQVRAIHSMKDLEISKTDVFKFI*RDTLEL Trigger: GAGCTCGAGGGTGTCTCTCCAGATGAACTTAAAGAC...ATCAGTTTTTGAAATTTCCAAGTCTTTCATAGAGTGAATGGCCCTGACCTGCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
||
| CDS-3UTR CCA 90 bp | TTCTTTTTAGGGGAGCAGGGTGTTCATCTGTTTAGCCTTGGTTACCCTGGAACTATAATAGCAGCATTGTaGGTTTCTTTTCGAAAACGA | + |
|
Preference number: 4 (lower is better) Translates to: FFLGEQGVHLFSLGYPGTIIAAL*VSFRKR Trigger: TCGTTTTCGAAAAGAAACCCACAATGCTGCTATTAT...AGTTCCAGGGTAACCAAGGCTAAACAGATGAACACCCTGCTCCCCTAAAAAGAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| CDS-3UTR CCA 90 bp | GAGAAAAGTAGTCCCCCTAACAATGACAGATGCAGGAACACTTCACAACGTCTCATAATAGCAGCATTGTaGGTTTCTTTTCGAAAACGA | + |
|
Preference number: 4 (lower is better) Translates to: EKSSPPNNDRCRNTSQRLIIAAL*VSFRKR Trigger: TCGTTTTCGAAAAGAAACCCACAATGCTGCTATTAT...GAGACGTTGTGAAGTGTTCCTGCATCTGTCATTGTTAGGGGGACTACTTTTCTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 ENSMUST00000226333.2 |
||
| CDS-3UTR CCA 90 bp | AAAAGTAGTCCCCCTAACAATGACAGATGCAGGAACACTTCACAACGTCTCATTTTATTTCAAATACCTTaGTTAGCTCGGCAGTCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: KSSPPNNDRCRNTSQRLILFQIP*LARQSG Trigger: TCCAGACTGCCGAGCTAACCAAGGTATTTGAAATAA...AATGAGACGTTGTGAAGTGTTCCTGCATCTGTCATTGTTAGGGGGACTACTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 ENSMUST00000226333.2 ENSMUST00000226937.2 |
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| CDS-3UTR CCA 90 bp | TGGCAGGTCAGGGCCATTCACTCTATGAAAGACTTGGAAATTTCAAAAACTGATTTATTTCAAATACCTTaGTTAGCTCGGCAGTCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: WQVRAIHSMKDLEISKTDLFQIP*LARQSG Trigger: TCCAGACTGCCGAGCTAACCAAGGTATTTGAAATAA...ATCAGTTTTTGAAATTTCCAAGTCTTTCATAGAGTGAATGGCCCTGACCTGCCA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| CDS-3UTR CCA 90 bp | AACAATGACAGATGCAGGAACACTTCACAACGTCTCATTACTATGAAGATGATTTTATTTCAAATACCTTaGTTAGCTCGGCAGTCTGGA | + |
|
Preference number: 4 (lower is better) Translates to: NNDRCRNTSQRLITMKMILFQIP*LARQSG Trigger: TCCAGACTGCCGAGCTAACCAAGGTATTTGAAATAA...AATCATCTTCATAGTAATGAGACGTTGTGAAGTGTTCCTGCATCTGTCATTGTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 ENSMUST00000226333.2 ENSMUST00000226937.2 |
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| CDS GCA 90 bp | GTCAATCTTCACATTTTCCTTCCGGTCGTCAGCGGCCCGTTGCCGTaGGATCTCTTGGGCCCCTTTAAGAATGGCTCGGCAGCCAACTCC | + |
|
Preference number: 5 (lower is better) Translates to: VNLHIFLPVVSGPLP*DLLGPFKNGSAANS Trigger: GGAGTTGGCTGCCGAGCCATTCTTAAAGGGGCCCAAGAGATCGCACGGCAACGGGCCGCTGACGACCGGAAGGAAAATGTGAAGATTGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226937.2 |
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| CDS GCA 90 bp | TCCTTGTCAATCTTCACATTTTCCTTCCGGTCGTCAGCGGCCCGTTaGCGTGCGATCTCTTGGGCCCCTTTAAGAATGGCTCGGCAGCCA | + |
|
Preference number: 5 (lower is better) Translates to: SLSIFTFSFRSSAAR*RAISWAPLRMARQP Trigger: TGGCTGCCGAGCCATTCTTAAAGGGGCCCAAGAGATCGCACGGCAACGGGCCGCTGACGACCGGAAGGAAAATGTGAAGATTGACAAGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226937.2 |
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| CDS-3UTR CAA 90 bp | CCAAGAGAGGAGGAAAACTGGCGGAGAGTTCAACAGAGGTCCCACTACATCTCTCTTATTTCAAATACCTaGGTTAGCTCGGCAGTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PREEENWRRVQQRSHYISLISNT*VSSAVW Trigger: CCAGACTGCCGAGCTAACCAAGGTATTTGAAATAAG...AGAGATGTAGTGGGACCTCTGTTGAACTCTCCGCCAGTTTTCCTCCTCTCTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 |
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| CDS-3UTR CAA 90 bp | TGCAAAGCATCCCTGGAGAAAAGTAGTCCCCCTAACAATGACAGATGCAGGAACCTTATTTCAAATACCTaGGTTAGCTCGGCAGTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: CKASLEKSSPPNNDRCRNLISNT*VSSAVW Trigger: CCAGACTGCCGAGCTAACCAAGGTATTTGAAATAAG...GTTCCTGCATCTGTCATTGTTAGGGGGACTACTTTTCTCCAGGGATGCTTTGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 ENSMUST00000226333.2 ENSMUST00000226937.2 |
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| CDS-3UTR CAA 90 bp | TGCAAAGCATCCCTGGAGAAAAGTAGTCCCCCTAACAATGACAGATGCAGGAACACCAGGCGTTCATCCTaGTCAATCTTCACATTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: CKASLEKSSPPNNDRCRNTRRSS*SIFTFS Trigger: GGAAAATGTGAAGATTGACAAGGATGAACGCCTGGT...GTTCCTGCATCTGTCATTGTTAGGGGGACTACTTTTCTCCAGGGATGCTTTGCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000226937.2 |
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| CDS-3UTR CAA 90 bp | CCCCCTAACAATGACAGATGCAGGAACACTTCACAACGTCTCATTACTATGAAGCTTATTTCAAATACCTaGGTTAGCTCGGCAGTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PPNNDRCRNTSQRLITMKLISNT*VSSAVW Trigger: CCAGACTGCCGAGCTAACCAAGGTATTTGAAATAAG...CTTCATAGTAATGAGACGTTGTGAAGTGTTCCTGCATCTGTCATTGTTAGGGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000079314.12 ENSMUST00000111817.8 ENSMUST00000226333.2 ENSMUST00000226937.2 |
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| CDS CCA 72 bp | TTCCGGTCGTCAGCGGCCCGTTGCCGTGCGATCTCTTaGGCCCCTTTAAGAATGGCTCGGCAGCCAACTCCC | + |
|
Preference number: 6 (lower is better) Translates to: FRSSAARCRAIS*APLRMARQPTP Trigger: GGGAGTTGGCTGCCGAGCCATTCTTAAAGGGGCCCAAGAGATCGCACGGCAACGGGCCGCTGACGACCGGAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226937.2 |
||
| CDS CAA 72 bp | CTTCCGGTCGTCAGCGGCCCGTTGCCGTGCGATCTCTaGGGCCCCTTTAAGAATGGCTCGGCAGCCAACTCC | + |
|
Preference number: 6 (lower is better) Translates to: LPVVSGPLPCDL*GPFKNGSAANS Trigger: GGAGTTGGCTGCCGAGCCATTCTTAAAGGGGCCCAAGAGATCGCACGGCAACGGGCCGCTGACGACCGGAAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000226937.2 |
||
| CDS GCA 72 bp | CACATTTTCCTTCCGGTCGTCAGCGGCCCGTTGCCGTaGGATCTCTTGGGCCCCTTTAAGAATGGCTCGGCA | + |
|
Preference number: 6 (lower is better) Translates to: HIFLPVVSGPLP*DLLGPFKNGSA Trigger: TGCCGAGCCATTCTTAAAGGGGCCCAAGAGATCGCACGGCAACGGGCCGCTGACGACCGGAAGGAAAATGTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226937.2 |
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| CDS CAA 90 bp | ATCCTTGTCAATCTTCACATTTTCCTTCCGGTCGTCAGCGGCCCGTaGCCGTGCGATCTCTTGGGCCCCTTTAAGAATGGCTCGGCAGCC | + |
|
Preference number: 6 (lower is better) Translates to: ILVNLHIFLPVVSGP*PCDLLGPFKNGSAA Trigger: GGCTGCCGAGCCATTCTTAAAGGGGCCCAAGAGATCGCACGGCAACGGGCCGCTGACGACCGGAAGGAAAATGTGAAGATTGACAAGGAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226937.2 |
||
| CDS GCA 72 bp | ATCTTCACATTTTCCTTCCGGTCGTCAGCGGCCCGTTaGCGTGCGATCTCTTGGGCCCCTTTAAGAATGGCT | + |
|
Preference number: 6 (lower is better) Translates to: IFTFSFRSSAAR*RAISWAPLRMA Trigger: AGCCATTCTTAAAGGGGCCCAAGAGATCGCACGGCAACGGGCCGCTGACGACCGGAAGGAAAATGTGAAGAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226937.2 |
||
| CDS CAA 72 bp | AATCTTCACATTTTCCTTCCGGTCGTCAGCGGCCCGTaGCCGTGCGATCTCTTGGGCCCCTTTAAGAATGGC | + |
|
Preference number: 6 (lower is better) Translates to: NLHIFLPVVSGP*PCDLLGPFKNG Trigger: GCCATTCTTAAAGGGGCCCAAGAGATCGCACGGCAACGGGCCGCTGACGACCGGAAGGAAAATGTGAAGATT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000226937.2 |
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