Pregenerated sensors for GMDS (Mus musculus)
Ensembl gene IDs: ENSMUSG00000038372Ensembl transcript IDs: ENSMUST00000041859.9, ENSMUST00000179717.2
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTACTGGACTCTaGTTCCCTGGCTCTGCACTGTCACCATGCCCCTCGAGTCTCTGC | + |
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Preference number: 1 (lower is better) Translates to: AQEVEGPWLAGVTGL*FPGSALSPCPSSLC Trigger: GCAGAGACTCGAGGGGCATGGTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CCA 90 bp | AGGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTACTaGACTCTGGTTCCCTGGCTCTGCACTGTCACCATGCCCCTCGAG | + |
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Preference number: 1 (lower is better) Translates to: RDSTGGRGSMVGRSY*TLVPWLCTVTMPLE Trigger: CTCGAGGGGCATGGTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CCA 90 bp | GGCCCAGCTCTGGATACAGGGACAGCACAGGAGGTCGAGGGTCCATaGTTGGCAGGAGTTACTGGACTCTGGTTCCCTGGCTCTGCACTG | + |
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Preference number: 1 (lower is better) Translates to: GPALDTGTAQEVEGP*LAGVTGLWFPGSAL Trigger: CAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTGTATCCAGAGCTGGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CCA 90 bp | GGCCTTAGCTCTGGTGTGTCCTGTCCCAGGCTCTACAAACCTCTGTaGCCCAGCTCTGGATACAGGGACAGCACAGGAGGTCGAGGGTCC | + |
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Preference number: 1 (lower is better) Translates to: GLSSGVSCPRLYKPL*PSSGYRDSTGGRGS Trigger: GGACCCTCGACCTCCTGTGCTGTCCCTGTATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTGGGACAGGACACACCAGAGCTAAGGCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CCA 90 bp | TGGTGTGTCCTGTCCCAGGCTCTACAAACCTCTGTGGCCCAGCTCTaGATACAGGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAG | + |
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Preference number: 1 (lower is better) Translates to: WCVLSQALQTSVAQL*IQGQHRRSRVHGWQ Trigger: CTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTGTATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTGGGACAGGACACACCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CCA 90 bp | CAGCTCTGGATACAGGGACAGCACAGGAGGTCGAGGGTCCATGGTTaGCAGGAGTTACTGGACTCTGGTTCCCTGGCTCTGCACTGTCAC | + |
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Preference number: 1 (lower is better) Translates to: QLWIQGQHRRSRVHG*QELLDSGSLALHCH Trigger: GTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTGTATCCAGAGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CAA 90 bp | CCAGCTCTGGATACAGGGACAGCACAGGAGGTCGAGGGTCCATGGTaGGCAGGAGTTACTGGACTCTGGTTCCCTGGCTCTGCACTGTCA | + |
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Preference number: 2 (lower is better) Translates to: PALDTGTAQEVEGPW*AGVTGLWFPGSALS Trigger: TGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTGTATCCAGAGCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR-3UTR GCA 90 bp | GGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTACTGGACTCTGGTCTGCACTGTCACCATaGCCCTCGAGTCTCTGCAGA | + |
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Preference number: 2 (lower is better) Translates to: GTAQEVEGPWLAGVTGLWSALSP*PSSLCR Trigger: TCTGCAGAGACTCGAGGGGCATGGTGACAGTGCAGA...CCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR-3UTR CCA 90 bp | CAGGCTCTACAAACCTCTGTGGCCCAGCTCTGGATACAGGGACAGCACAGGAGGTGGACTCTGGTTCCCTaGCTCTGCACTGTCACCATG | + |
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Preference number: 2 (lower is better) Translates to: QALQTSVAQLWIQGQHRRWTLVP*LCTVTM Trigger: CATGGTGACAGTGCAGAGCCAGGGAACCAGAGTCCA...CCTCCTGTGCTGTCCCTGTATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CCA 72 bp | GTCGAGGGTCCATGGTTGGCAGGAGTTACTGGACTCTaGTTCCCTGGCTCTGCACTGTCACCATGCCCCTCG | + |
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Preference number: 3 (lower is better) Translates to: VEGPWLAGVTGL*FPGSALSPCPS Trigger: CGAGGGGCATGGTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR GCA 72 bp | GTTGGCAGGAGTTACTGGACTCTGGTTCCCTGGCTCTaGACTGTCACCATGCCCCTCGAGTCTCTGCAGAGG | + |
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Preference number: 3 (lower is better) Translates to: VGRSYWTLVPWL*TVTMPLESLQR Trigger: CCTCTGCAGAGACTCGAGGGGCATGGTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAAC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CCA 72 bp | CTGTCCCAGGCTCTACAAACCTCTGTGGCCCAGCTCTaGATACAGGGACAGCACAGGAGGTCGAGGGTCCAT | + |
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Preference number: 3 (lower is better) Translates to: LSQALQTSVAQL*IQGQHRRSRVH Trigger: ATGGACCCTCGACCTCCTGTGCTGTCCCTGTATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTGGGACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CCA 72 bp | ACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTACTaGACTCTGGTTCCCTGGCTCTGCACTGTCACCATG | + |
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Preference number: 3 (lower is better) Translates to: TGGRGSMVGRSY*TLVPWLCTVTM Trigger: CATGGTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CCA 72 bp | ATACAGGGACAGCACAGGAGGTCGAGGGTCCATGGTTaGCAGGAGTTACTGGACTCTGGTTCCCTGGCTCTG | + |
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Preference number: 3 (lower is better) Translates to: IQGQHRRSRVHG*QELLDSGSLAL Trigger: CAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTGTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CCA 72 bp | TCTGGTGTGTCCTGTCCCAGGCTCTACAAACCTCTGTaGCCCAGCTCTGGATACAGGGACAGCACAGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: SGVSCPRLYKPL*PSSGYRDSTGG Trigger: ACCTCCTGTGCTGTCCCTGTATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTGGGACAGGACACACCAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR TCA 90 bp | GTGTCCTGTCCCAGGCTCTACAAACCTCTGTGGCCCAGCTCTGGATACAGGGACTGGGGTTGGTCCTCATaGGCTCCACGTCGGCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: VSCPRLYKPLWPSSGYRDWGWSS*APRRPA Trigger: TGCAGGCCGACGTGGAGCTCATGAGGACCAACCCCA...GTCCCTGTATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTGGGACAGGACAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR GCA 90 bp | CTCTGGTGTGTCCTGTCCCAGGCTCTACAAACCTCTGTGGCCCAGCTCTGGATAAGCTCCACGTCGGCCTaGACCATCTCCCTCACCAGC | + |
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Preference number: 4 (lower is better) Translates to: LWCVLSQALQTSVAQLWISSTSA*TISLTS Trigger: GCTGGTGAGGGAGATGGTGCAGGCCGACGTGGAGCT...TATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTGGGACAGGACACACCAGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CCA 90 bp | GGAGTTACTGGACTCTGGTTCCCTGGCTCTGCACTGTCACCATGCCCCTCGAGTGGCCCCAGTCTCGTTTaGCATCCAGATTTCCCAAGC | + |
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Preference number: 4 (lower is better) Translates to: GVTGLWFPGSALSPCPSSGPSLV*HPDFPS Trigger: GCTTGGGAAATCTGGATGCCAAACGAGACTGGGGCC...ACTCGAGGGGCATGGTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CCA 90 bp | GTGTCCTGTCCCAGGCTCTACAAACCTCTGTGGCCCAGCTCTGGATACAGGGACGCTTCTGCTGAGCCTTaGAGCAGTCTCCCTGCAGAA | + |
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Preference number: 4 (lower is better) Translates to: VSCPRLYKPLWPSSGYRDASAEP*SSLPAE Trigger: TTCTGCAGGGAGACTGCTCCAAGGCTCAGCAGAAGC...GTCCCTGTATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTGGGACAGGACAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| 3UTR CAA 72 bp | GATACAGGGACAGCACAGGAGGTCGAGGGTCCATGGTaGGCAGGAGTTACTGGACTCTGGTTCCCTGGCTCT | + |
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Preference number: 4 (lower is better) Translates to: DTGTAQEVEGPW*AGVTGLWFPGS Trigger: AGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTGTATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR TCA 90 bp | TCCATGGTTGGCAGGAGTTACTGGACTCTGGTTCCCTGGCTCTGCACTGTCACCGGCAGGTGCTGTCAGTaGGGTCACCATAGTGCAACT | + |
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Preference number: 4 (lower is better) Translates to: SMVGRSYWTLVPWLCTVTGRCCQ*GHHSAT Trigger: AGTTGCACTATGGTGACCTCACTGACAGCACCTGCC...GGTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAACCATGGA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR TCA 90 bp | GGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTACTGGACTCTGGAGTCAAAGGAGATCTTaGCATGGCTCTGGGCTCCAA | + |
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Preference number: 4 (lower is better) Translates to: GTAQEVEGPWLAGVTGLWSQRRS*HGSGLQ Trigger: TTGGAGCCCAGAGCCATGTCAAGATCTCCTTTGACT...CCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CCA 90 bp | GTGTCCTGTCCCAGGCTCTACAAACCTCTGTGGCCCAGCTCTGGATACAGGGACCGCCGTACTATTCCATaGACCTCGTACCCTTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: VSCPRLYKPLWPSSGYRDRRTIP*TSYPFS Trigger: GGAGAAAGGGTACGAGGTCCATGGAATAGTACGGCG...GTCCCTGTATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTGGGACAGGACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR TCA 90 bp | GGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTACTGGACTCTGGAGATCCACAGTCACGTaGACTTTGCCGGTCTCTTTA | + |
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Preference number: 4 (lower is better) Translates to: GTAQEVEGPWLAGVTGLWRSTVT*TLPVSL Trigger: TAAAGAGACCGGCAAAGTTCACGTGACTGTGGATCT...CCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR GCA 90 bp | ACAAACCTCTGTGGCCCAGCTCTGGATACAGGGACAGCACAGGAGGTCGAGGGTTTGGAGCAGTCTCCCTaGAGAAAGTCCACTTCAGTC | + |
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Preference number: 4 (lower is better) Translates to: TNLCGPALDTGTAQEVEGLEQSP*RKSTSV Trigger: GACTGAAGTGGACTTTCTGCAGGGAGACTGCTCCAA...ACCCTCGACCTCCTGTGCTGTCCCTGTATCCAGAGCTGGGCCACAGAGGTTTGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CCA 90 bp | CAGCTCTGGATACAGGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGAATAGGCATAGAGTTTaGCTGCTCCATAGGGTGACC | + |
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Preference number: 4 (lower is better) Translates to: QLWIQGQHRRSRVHGWQENRHRV*LLHRVT Trigger: GGTCACCCTATGGAGCAGCCAAACTCTATGCCTATT...CTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTGTATCCAGAGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR GCA 90 bp | TTGGCAGGAGTTACTGGACTCTGGTTCCCTGGCTCTGCACTGTCACCATGCCCCTCTGGCTCATCATTCTaGAACATGAGCCACATAGCC | + |
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Preference number: 4 (lower is better) Translates to: LAGVTGLWFPGSALSPCPSGSSF*NMSHIA Trigger: GGCTATGTGGCTCATGTTGCAGAATGATGAGCCAGA...GGGGCATGGTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR GCA 90 bp | CAGGCTCTACAAACCTCTGTGGCCCAGCTCTGGATACAGGGACAGCACAGGAGGCAGTCACGTGAACTTTaGCGGTCTCTTTACATCTGC | + |
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Preference number: 4 (lower is better) Translates to: QALQTSVAQLWIQGQHRRQSREL*RSLYIC Trigger: GCAGATGTAAAGAGACCGGCAAAGTTCACGTGACTG...CCTCCTGTGCTGTCCCTGTATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CCA 90 bp | CAGGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTACTGGACTCTGGTGTGGTCTCCTTCTaGGGTATTTCCTGCACTTTT | + |
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Preference number: 4 (lower is better) Translates to: QGQHRRSRVHGWQELLDSGVVSF*GISCTF Trigger: AAAAGTGCAGGAAATACCCCAGAAGGAGACCACACC...AGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR TCA 90 bp | TCTGGTGTGTCCTGTCCCAGGCTCTACAAACCTCTGTGGCCCAGCTCTGGATACAATTCACGGACACTGTaGACTTCCCCAGTAGCTATG | + |
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Preference number: 4 (lower is better) Translates to: SGVSCPRLYKPLWPSSGYNSRTL*TSPVAM Trigger: CATAGCTACTGGGGAAGTTCACAGTGTCCGTGAATT...GTATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTGGGACAGGACACACCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR GCA 90 bp | GCTCTGGATACAGGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTGCCACAAGTTTTAATTaGATCCAGAAGCCGCAAGGT | + |
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Preference number: 4 (lower is better) Translates to: ALDTGTAQEVEGPWLAGVATSFN*IQKPQG Trigger: ACCTTGCGGCTTCTGGATGCAATTAAAACTTGTGGC...AACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTGTATCCAGAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR TCA 90 bp | ACAGGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTACTGGACTCCTTCTGGGACTCTCATaGTTGAAGAGAATTCCATTC | + |
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Preference number: 4 (lower is better) Translates to: TGTAQEVEGPWLAGVTGLLLGLS*LKRIPF Trigger: GAATGGAATTCTCTTCAATCATGAGAGTCCCAGAAG...GAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR TCA 90 bp | ACTGGACTCTGGTTCCCTGGCTCTGCACTGTCACCATGCCCCTCGAGTCTCTGCTCCGATGTGCATGAATaGCTTTTCAACAAATTCACG | + |
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Preference number: 4 (lower is better) Translates to: TGLWFPGSALSPCPSSLCSDVHE*LFNKFT Trigger: CGTGAATTTGTTGAAAAGTCATTCATGCACATCGGA...GCAGAGACTCGAGGGGCATGGTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CCA 90 bp | TCCATGGTTGGCAGGAGTTACTGGACTCTGGTTCCCTGGCTCTGCACTGTCACCTCGGATAGAAAGGTGTaGTCTCCTTCTGGGGTATTT | + |
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Preference number: 4 (lower is better) Translates to: SMVGRSYWTLVPWLCTVTSDRKV*SPSGVF Trigger: AAATACCCCAGAAGGAGACCACACCTTTCTATCCGA...GGTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAACCATGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR TCA 90 bp | CTCTGGTGTGTCCTGTCCCAGGCTCTACAAACCTCTGTGGCCCAGCTCTGGATAATAAAGTTCACTTGTTaGGGCCTGGTAGAACTTCAC | + |
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Preference number: 4 (lower is better) Translates to: LWCVLSQALQTSVAQLWIIKFTC*GLVELH Trigger: GTGAAGTTCTACCAGGCCTCAACAAGTGAACTTTAT...TATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTGGGACAGGACACACCAGAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR TCA 90 bp | TGGATACAGGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTACTGGTAAATCTTAGCTACTaGCCGGCTAATTTTTCGAGT | + |
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Preference number: 4 (lower is better) Translates to: WIQGQHRRSRVHGWQELLVNLSY*PANFSS Trigger: ACTCGAAAAATTAGCCGGTCAGTAGCTAAGATTTAC...CAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTGTATCCA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR GCA 90 bp | CAGGCTCTACAAACCTCTGTGGCCCAGCTCTGGATACAGGGACAGCACAGGAGGATGGTTTTTCCGATGTaGATGAATGACTTTTCAACA | + |
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Preference number: 4 (lower is better) Translates to: QALQTSVAQLWIQGQHRRMVFPM*MNDFST Trigger: TGTTGAAAAGTCATTCATGCACATCGGAAAAACCAT...CCTCCTGTGCTGTCCCTGTATCCAGAGCTGGGCCACAGAGGTTTGTAGAGCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CCA 90 bp | CCAGTCAGAGGAGGAGACTTTGACAAAAGCAATGCGGCCTTAGCTCTGGTGTGTAAGGAGATCTTGACATaGCTCTGGGCTCCAAGATTA | + |
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Preference number: 4 (lower is better) Translates to: PVRGGDFDKSNAALALVCKEILT*LWAPRL Trigger: TAATCTTGGAGCCCAGAGCCATGTCAAGATCTCCTT...ACACACCAGAGCTAAGGCCGCATTGCTTTTGTCAAAGTCTCCTCCTCTGACTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CCA 90 bp | GATTTCCTGAAACCAGTCAGAGGAGGAGACTTTGACAAAAGCAATGCGGCCTTACCTCTACATAGTCCTTaGCATGGCCCCAGTCTCGTT | + |
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Preference number: 4 (lower is better) Translates to: DFLKPVRGGDFDKSNAALPLHSP*HGPSLV Trigger: AACGAGACTGGGGCCATGCCAAGGACTATGTAGAGG...TAAGGCCGCATTGCTTTTGTCAAAGTCTCCTCCTCTGACTGGTTTCAGGAAATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CAA 90 bp | GTTGGCAGGAGTTACTGGACTCTGGTTCCCTGGCTCTGCACTGTCACCATGCCCGCCACCTTCCTGAGCTaGCCCATCTCGCCATCCCCG | + |
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Preference number: 5 (lower is better) Translates to: VGRSYWTLVPWLCTVTMPATFLS*PISPSP Trigger: CGGGGATGGCGAGATGGGCAAGCTCAGGAAGGTGGC...GGGCATGGTGACAGTGCAGAGCCAGGGAACCAGAGTCCAGTAACTCCTGCCAAC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CAA 90 bp | CAGCTCTGGATACAGGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTGGCCCCAGTCTCGTTaGGCATCCAGATTTCCCAAG | + |
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Preference number: 5 (lower is better) Translates to: QLWIQGQHRRSRVHGWQEWPQSR*ASRFPK Trigger: CTTGGGAAATCTGGATGCCAAACGAGACTGGGGCCA...CTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTGTATCCAGAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS TCA 90 bp | ACCAGCTCGTCAAAGGCAACGCGGGGCTTCCAGTTTAGCTTCTGCTaGGCCTTGGAGCAGTCTCCCTGCAGAAAGTCCACTTCAGTCGGT | + |
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Preference number: 5 (lower is better) Translates to: TSSSKATRGFQFSFC*ALEQSPCRKSTSVG Trigger: ACCGACTGAAGTGGACTTTCTGCAGGGAGACTGCTCCAAGGCTCAGCAGAAGCTAAACTGGAAGCCCCGCGTTGCCTTTGACGAGCTGGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS CCA 90 bp | CGTCAAAGGCAACGCGGGGCTTCCAGTTTAGCTTCTGCTGAGCCTTaGAGCAGTCTCCCTGCAGAAAGTCCACTTCAGTCGGTCGGTAGT | + |
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Preference number: 5 (lower is better) Translates to: RQRQRGASSLASAEP*SSLPAESPLQSVGS Trigger: ACTACCGACCGACTGAAGTGGACTTTCTGCAGGGAGACTGCTCCAAGGCTCAGCAGAAGCTAAACTGGAAGCCCCGCGTTGCCTTTGACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CAA 90 bp | GGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTACTGGACTCTGGTAAGTCAAAGGAGATCTaGACATGGCTCTGGGCTCCA | + |
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Preference number: 5 (lower is better) Translates to: GQHRRSRVHGWQELLDSGKSKEI*TWLWAP Trigger: TGGAGCCCAGAGCCATGTCAAGATCTCCTTTGACTT...ACCAGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS GCA 90 bp | CCGTACTATTCCATGGACCTCGTACCCTTTCTCCAACAGGAATTCTaGCAAGTACGAACCATCCTGTCCGGTGATGCCAGTGATGAGAGC | + |
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Preference number: 5 (lower is better) Translates to: PYYSMDLVPFLQQEF*QVRTILSGDASDES Trigger: GCTCTCATCACTGGCATCACCGGACAGGATGGTTCGTACTTGGCAGAATTCCTGTTGGAGAAAGGGTACGAGGTCCATGGAATAGTACGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CAA 90 bp | CAGGGACAGCACAGGAGGTCGAGGGTCCATGGTTGGCAGGAGTTACTGGACTCTGTAGGCTTGACTTCATaGATGATTTTCACTAGGCAG | + |
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Preference number: 5 (lower is better) Translates to: QGQHRRSRVHGWQELLDSVGLTS*MIFTRQ Trigger: CTGCCTAGTGAAAATCATCAATGAAGTCAAGCCTAC...AGAGTCCAGTAACTCCTGCCAACCATGGACCCTCGACCTCCTGTGCTGTCCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS GCA 90 bp | GGCCTGGTAGAACTTCACAGAATTTATAAGGCCACAAGTTTTAATTaGATCCAGAAGCCGCAAGGTGCCAACGCCATCAACATCTGCGGT | + |
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Preference number: 5 (lower is better) Translates to: GLVELHRIYKATSFN*IQKPQGANAINICG Trigger: ACCGCAGATGTTGATGGCGTTGGCACCTTGCGGCTTCTGGATGCAATTAAAACTTGTGGCCTTATAAATTCTGTGAAGTTCTACCAGGCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS CCA 90 bp | CATAGAGTTTGGCTGCTCCATAGGGTGACCTCGGATAGAAAGGTGTaGTCTCCTTCTGGGGTATTTCCTGCACTTTTCCATAAAGTTCAC | + |
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Preference number: 5 (lower is better) Translates to: HRVWLLHRVTSDRKV*SPSGVFPALFHKVH Trigger: GTGAACTTTATGGAAAAGTGCAGGAAATACCCCAGAAGGAGACCACACCTTTCTATCCGAGGTCACCCTATGGAGCAGCCAAACTCTATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS CCA 90 bp | TTCACGGACACTGTGAACTTCCCCAGTAGCTATGACAAAGTCCTCTaGCTCATCATTCTGCAACATGAGCCACATAGCCTCTACATAGTC | + |
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Preference number: 5 (lower is better) Translates to: FTDTVNFPSSYDKVL*LIILQHEPHSLYIV Trigger: GACTATGTAGAGGCTATGTGGCTCATGTTGCAGAATGATGAGCCAGAGGACTTTGTCATAGCTACTGGGGAAGTTCACAGTGTCCGTGAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS-3UTR CAA 90 bp | TGTTTCCTTCAATATGAGCCTGAGGATTCTTATATAAATGTTCAATTCGACCTGGCCACCTTCCTGAGCTaGCCCATCTCGCCATCCCCG | + |
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Preference number: 5 (lower is better) Translates to: CFLQYEPEDSYINVQFDLATFLS*PISPSP Trigger: CGGGGATGGCGAGATGGGCAAGCTCAGGAAGGTGGC...CAGGTCGAATTGAACATTTATATAAGAATCCTCAGGCTCATATTGAAGGAAACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000179717.2 |
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| CDS-3UTR CAA 90 bp | CCAGTCAGAGGAGGAGACTTTGACAAAAGCAATGCGGCCTTAGCTCTGGTGTGTTTCCATAAAGTTCACTaGTTGAGGCCTGGTAGAACT | + |
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Preference number: 5 (lower is better) Translates to: PVRGGDFDKSNAALALVCFHKVH*LRPGRT Trigger: AGTTCTACCAGGCCTCAACAAGTGAACTTTATGGAA...ACACACCAGAGCTAAGGCCGCATTGCTTTTGTCAAAGTCTCCTCCTCTGACTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS GCA 90 bp | CTTCAGTCGGTCGGTAGTATTTCAGATCCACAGTCACGTGAACTTTaGCGGTCTCTTTACATCTGCCCACTTCATTTTCATTCTTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: LQSVGSISDPQSREL*RSLYICPLHFHSFL Trigger: AAGGAAAGAATGAAAATGAAGTGGGCAGATGTAAAGAGACCGGCAAAGTTCACGTGACTGTGGATCTGAAATACTACCGACCGACTGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS TCA 90 bp | TTTCCGATGTGCATGAATGACTTTTCAACAAATTCACGGACACTGTaGACTTCCCCAGTAGCTATGACAAAGTCCTCTGGCTCATCATTC | + |
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Preference number: 5 (lower is better) Translates to: FPMCMNDFSTNSRTL*TSPVAMTKSSGSSF Trigger: GAATGATGAGCCAGAGGACTTTGTCATAGCTACTGGGGAAGTTCACAGTGTCCGTGAATTTGTTGAAAAGTCATTCATGCACATCGGAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS CCA 90 bp | TCAATTCGACCTGTATTAAATGAACTAGATCGCCGTACTATTCCATaGACCTCGTACCCTTTCTCCAACAGGAATTCTGCCAAGTACGAA | + |
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Preference number: 5 (lower is better) Translates to: SIRPVLNELDRRTIP*TSYPFSNRNSAKYE Trigger: TTCGTACTTGGCAGAATTCCTGTTGGAGAAAGGGTACGAGGTCCATGGAATAGTACGGCGATCTAGTTCATTTAATACAGGTCGAATTGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS GCA 90 bp | ATTTCAGATCCACAGTCACGTGAACTTTGCCGGTCTCTTTACATCTaGCCACTTCATTTTCATTCTTTCCTTCCCACACAATGGTTTTTC | + |
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Preference number: 5 (lower is better) Translates to: ISDPQSRELCRSLYI*PLHFHSFLPTQWFF Trigger: GAAAAACCATTGTGTGGGAAGGAAAGAATGAAAATGAAGTGGGCAGATGTAAAGAGACCGGCAAAGTTCACGTGACTGTGGATCTGAAAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS TCA 90 bp | CTCCTTCTGGGGTATTTCCTGCACTTTTCCATAAAGTTCACTTGTTaGGGCCTGGTAGAACTTCACAGAATTTATAAGGCCACAAGTTTT | + |
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Preference number: 5 (lower is better) Translates to: LLLGYFLHFSIKFTC*GLVELHRIYKATSF Trigger: AAAACTTGTGGCCTTATAAATTCTGTGAAGTTCTACCAGGCCTCAACAAGTGAACTTTATGGAAAAGTGCAGGAAATACCCCAGAAGGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS GCA 72 bp | GCGTTGGGGTTGGTCCTCATGAGCTCCACGTCGGCCTaGACCATCTCCCTCACCAGCTCGTCAAAGGCAACG | + |
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Preference number: 6 (lower is better) Translates to: ALGLVLMSSTSA*TISLTSSSKAT Trigger: CGTTGCCTTTGACGAGCTGGTGAGGGAGATGGTGCAGGCCGACGTGGAGCTCATGAGGACCAACCCCAACGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS CCA 72 bp | CAACGCGGGGCTTCCAGTTTAGCTTCTGCTGAGCCTTaGAGCAGTCTCCCTGCAGAAAGTCCACTTCAGTCG | + |
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Preference number: 6 (lower is better) Translates to: QRGASSLASAEP*SSLPAESPLQS Trigger: CGACTGAAGTGGACTTTCTGCAGGGAGACTGCTCCAAGGCTCAGCAGAAGCTAAACTGGAAGCCCCGCGTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS TCA 72 bp | TCAAAGGCAACGCGGGGCTTCCAGTTTAGCTTCTGCTaGGCCTTGGAGCAGTCTCCCTGCAGAAAGTCCACT | + |
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Preference number: 6 (lower is better) Translates to: SKATRGFQFSFC*ALEQSPCRKST Trigger: AGTGGACTTTCTGCAGGGAGACTGCTCCAAGGCTCAGCAGAAGCTAAACTGGAAGCCCCGCGTTGCCTTTGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS GCA 72 bp | TCCATGGACCTCGTACCCTTTCTCCAACAGGAATTCTaGCAAGTACGAACCATCCTGTCCGGTGATGCCAGT | + |
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Preference number: 6 (lower is better) Translates to: SMDLVPFLQQEF*QVRTILSGDAS Trigger: ACTGGCATCACCGGACAGGATGGTTCGTACTTGGCAGAATTCCTGTTGGAGAAAGGGTACGAGGTCCATGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS CCA 72 bp | TGGCTGCTCCATAGGGTGACCTCGGATAGAAAGGTGTaGTCTCCTTCTGGGGTATTTCCTGCACTTTTCCAT | + |
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Preference number: 6 (lower is better) Translates to: WLLHRVTSDRKV*SPSGVFPALFH Trigger: ATGGAAAAGTGCAGGAAATACCCCAGAAGGAGACCACACCTTTCTATCCGAGGTCACCCTATGGAGCAGCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS CCA 72 bp | CACGGAAATTCACCACAATCCAATAGGCATAGAGTTTaGCTGCTCCATAGGGTGACCTCGGATAGAAAGGTG | + |
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Preference number: 6 (lower is better) Translates to: HGNSPQSNRHRV*LLHRVTSDRKV Trigger: CACCTTTCTATCCGAGGTCACCCTATGGAGCAGCCAAACTCTATGCCTATTGGATTGTGGTGAATTTCCGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS CCA 72 bp | CCTGTATTAAATGAACTAGATCGCCGTACTATTCCATaGACCTCGTACCCTTTCTCCAACAGGAATTCTGCC | + |
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Preference number: 6 (lower is better) Translates to: PVLNELDRRTIP*TSYPFSNRNSA Trigger: GGCAGAATTCCTGTTGGAGAAAGGGTACGAGGTCCATGGAATAGTACGGCGATCTAGTTCATTTAATACAGG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS TCA 72 bp | TGCATGAATGACTTTTCAACAAATTCACGGACACTGTaGACTTCCCCAGTAGCTATGACAAAGTCCTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: CMNDFSTNSRTL*TSPVAMTKSSG Trigger: GCCAGAGGACTTTGTCATAGCTACTGGGGAAGTTCACAGTGTCCGTGAATTTGTTGAAAAGTCATTCATGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS GCA 72 bp | GTCGGTAGTATTTCAGATCCACAGTCACGTGAACTTTaGCGGTCTCTTTACATCTGCCCACTTCATTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: VGSISDPQSREL*RSLYICPLHFH Trigger: ATGAAAATGAAGTGGGCAGATGTAAAGAGACCGGCAAAGTTCACGTGACTGTGGATCTGAAATACTACCGAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS TCA 72 bp | GGGTATTTCCTGCACTTTTCCATAAAGTTCACTTGTTaGGGCCTGGTAGAACTTCACAGAATTTATAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: GYFLHFSIKFTC*GLVELHRIYKA Trigger: GGCCTTATAAATTCTGTGAAGTTCTACCAGGCCTCAACAAGTGAACTTTATGGAAAAGTGCAGGAAATACCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS TCA 72 bp | TCCTTCCCACACAATGGTTTTTCCGATGTGCATGAATaGCTTTTCAACAAATTCACGGACACTGTGAACTTC | + |
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Preference number: 6 (lower is better) Translates to: SFPHNGFSDVHE*LFNKFTDTVNF Trigger: GAAGTTCACAGTGTCCGTGAATTTGTTGAAAAGTCATTCATGCACATCGGAAAAACCATTGTGTGGGAAGGA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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| CDS GCA 72 bp | TCTGGGACTCTCATGATTGAAGAGAATTCCATTCACTaGAAAGAGATTATAAGCTTCACGGAAATTCACCAC | + |
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Preference number: 6 (lower is better) Translates to: SGTLMIEENSIH*KEIISFTEIHH Trigger: GTGGTGAATTTCCGTGAAGCTTATAATCTCTTTGCAGTGAATGGAATTCTCTTCAATCATGAGAGTCCCAGA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041859.9 |
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