Pregenerated sensors for GMCL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000001157Ensembl transcript IDs: ENSMUST00000001185.14, ENSMUST00000113679.2
Found 46 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGTTGTACACCTTCACAGCATGCATGTATTGACCAAAGGAAAACTTaGAGGAAGTCAGTTCTCTCCTTTGACCATGTGTGTCCTGGGGAT | + |
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Preference number: 1 (lower is better) Translates to: CCTPSQHACIDQRKT*RKSVLSFDHVCPGD Trigger: ATCCCCAGGACACACATGGTCAAAGGAGAGAACTGACTTCCTCCAAGTTTTCCTTTGGTCAATACATGCATGCTGTGAAGGTGTACAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| 3UTR TCA 90 bp | TCTAACACGACTGTTTTGTTCCCAGCTCCCCCTGTACATTCACCATaGAATCTACTTATGTATGTGACTCAAAGGCACTCAGTTCAGAGG | + |
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Preference number: 1 (lower is better) Translates to: SNTTVLFPAPPVHSP*NLLMYVTQRHSVQR Trigger: CCTCTGAACTGAGTGCCTTTGAGTCACATACATAAGTAGATTTCATGGTGAATGTACAGGGGGAGCTGGGAACAAAACAGTCGTGTTAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| 3UTR TCA 90 bp | ATTCTGGAAAGGATCTCAACTGAACACAAGACTTCACCAGGTGGCTaGACAAATGAAAGGACAGCTTTAAAGGCACCAATTGAAAGAGCA | + |
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Preference number: 1 (lower is better) Translates to: ILERISTEHKTSPGG*TNERTALKAPIERA Trigger: TGCTCTTTCAATTGGTGCCTTTAAAGCTGTCCTTTCATTTGTTCAGCCACCTGGTGAAGTCTTGTGTTCAGTTGAGATCCTTTCCAGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| 3UTR TCA 90 bp | TCCGTCCTTAGCATTCTCTTAACAAAACAGGAACACATTTACAGATaGGTAAACTCACTAACATTAGATAGGATCGAAATTCAAGCTCAA | + |
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Preference number: 1 (lower is better) Translates to: SVLSILLTKQEHIYR*VNSLTLDRIEIQAQ Trigger: TTGAGCTTGAATTTCGATCCTATCTAATGTTAGTGAGTTTACTCATCTGTAAATGTGTTCCTGTTTTGTTAAGAGAATGCTAAGGACGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| 3UTR CAA 90 bp | CCTTTGACCATGTGTGTCCTGGGGATGCAACCCAAACTGTCAGGCTaGATGGCAGGCATCTTTAAAGGCTCAGTCATCTTGCCAGTCCCC | + |
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Preference number: 2 (lower is better) Translates to: PLTMCVLGMQPKLSG*MAGIFKGSVILPVP Trigger: GGGGACTGGCAAGATGACTGAGCCTTTAAAGATGCCTGCCATCAAGCCTGACAGTTTGGGTTGCATCCCCAGGACACACATGGTCAAAGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| 3UTR-3UTR GCA 90 bp | CTTGGAGGAAGTCAGTTCTCTCCTTTGACCATGTGTGTCCTGGGGATGCAACCCAAGGCTCAGTCATCTTaGCAGTCCCCCAATTCAATT | + |
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Preference number: 2 (lower is better) Translates to: LGGSQFSPLTMCVLGMQPKAQSS*QSPNSI Trigger: AATTGAATTGGGGGACTGGCAAGATGACTGAGCCTT...GGGTTGCATCCCCAGGACACACATGGTCAAAGGAGAGAACTGACTTCCTCCAAG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| 3UTR-3UTR CCA 90 bp | GGCTTGATGGCAGGCATCTTTAAAGGCTCAGTCATCTTGCCAGTCCCCCAATTCTCCATCCTCTGTTCCTaGTCAGAAATGCTGTTTTGC | + |
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Preference number: 2 (lower is better) Translates to: GLMAGIFKGSVILPVPQFSILCS*SEMLFC Trigger: GCAAAACAGCATTTCTGACCAGGAACAGAGGATGGA...GAATTGGGGGACTGGCAAGATGACTGAGCCTTTAAAGATGCCTGCCATCAAGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| 3UTR-3UTR GCA 90 bp | GACCAAAGGAAAACTTGGAGGAAGTCAGTTCTCTCCTTTGACCATGTGTGTCCTGTTCCTGGTCAGAAATaGTGTTTTGCACCTTTTCAC | + |
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Preference number: 2 (lower is better) Translates to: DQRKTWRKSVLSFDHVCPVPGQK*CFAPFH Trigger: GTGAAAAGGTGCAAAACAGCATTTCTGACCAGGAAC...AGGACACACATGGTCAAAGGAGAGAACTGACTTCCTCCAAGTTTTCCTTTGGTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| 3UTR-3UTR TCA 90 bp | ACAAGGGACCAACACATACAGATCGGGATGAGCATACATCTTATTCTTGACAAGCCTGTACATTCACCATaGAATCTACTTATGTATGTG | + |
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Preference number: 2 (lower is better) Translates to: TRDQHIQIGMSIHLILDKPVHSP*NLLMYV Trigger: CACATACATAAGTAGATTTCATGGTGAATGTACAGG...CTTGTCAAGAATAAGATGTATGCTCATCCCGATCTGTATGTGTTGGTCCCTTGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| 3UTR-3UTR TCA 90 bp | TGGAGGACAATGATCCAGGCTATTTTCAATAGCAATAAACACAAGGGACCAACACCTTTTAACATGGTTTaGCAGATGCTTTCTCAGTTT | + |
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Preference number: 2 (lower is better) Translates to: WRTMIQAIFNSNKHKGPTPFNMV*QMLSQF Trigger: AAACTGAGAAAGCATCTGTCAAACCATGTTAAAAGG...TGTTGGTCCCTTGTGTTTATTGCTATTGAAAATAGCCTGGATCATTGTCCTCCA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| 3UTR-3UTR CCA 90 bp | ACAAGGGACCAACACATACAGATCGGGATGAGCATACATCTTATTCTTGACAAGGATATCCTTTTAACATaGTTTGACAGATGCTTTCTC | + |
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Preference number: 2 (lower is better) Translates to: TRDQHIQIGMSIHLILDKDILLT*FDRCFL Trigger: GAGAAAGCATCTGTCAAACCATGTTAAAAGGATATC...CTTGTCAAGAATAAGATGTATGCTCATCCCGATCTGTATGTGTTGGTCCCTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| 3UTR CAA 90 bp | AAATGTTTATTTATTTGTGTTGTACACCTTCACAGCATGCATGTATaGACCAAAGGAAAACTTGGAGGAAGTCAGTTCTCTCCTTTGACC | + |
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Preference number: 2 (lower is better) Translates to: KCLFICVVHLHSMHV*TKGKLGGSQFSPLT Trigger: GGTCAAAGGAGAGAACTGACTTCCTCCAAGTTTTCCTTTGGTCAATACATGCATGCTGTGAAGGTGTACAACACAAATAAATAAACATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| 3UTR-3UTR CCA 90 bp | TGTACATTCACCATGAAATCTACTTATGTATGTGACTCAAAGGCACTCAGTTCAAAGAGCATTTATGATTaGCCACTTAAACTCCGTCCT | + |
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Preference number: 2 (lower is better) Translates to: CTFTMKSTYVCDSKALSSKSIYD*PLKLRP Trigger: AGGACGGAGTTTAAGTGGCCAATCATAAATGCTCTT...TGAACTGAGTGCCTTTGAGTCACATACATAAGTAGATTTCATGGTGAATGTACA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| 3UTR-3UTR CAA 90 bp | CAGCATGCATGTATTGACCAAAGGAAAACTTGGAGGAAGTCAGTTCTCTCCTTTCCCAAACTGTCAGGCTaGATGGCAGGCATCTTTAAA | + |
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Preference number: 3 (lower is better) Translates to: QHACIDQRKTWRKSVLSFPKLSG*MAGIFK Trigger: TTTAAAGATGCCTGCCATCAAGCCTGACAGTTTGGG...AAAGGAGAGAACTGACTTCCTCCAAGTTTTCCTTTGGTCAATACATGCATGCTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| 3UTR TCA 72 bp | ACTGTTTTGTTCCCAGCTCCCCCTGTACATTCACCATaGAATCTACTTATGTATGTGACTCAAAGGCACTCA | + |
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Preference number: 3 (lower is better) Translates to: TVLFPAPPVHSP*NLLMYVTQRHS Trigger: TGAGTGCCTTTGAGTCACATACATAAGTAGATTTCATGGTGAATGTACAGGGGGAGCTGGGAACAAAACAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| 3UTR TCA 72 bp | TTATTTGTGTTGTACACCTTCACAGCATGCATGTATTaGCCAAAGGAAAACTTGGAGGAAGTCAGTTCTCTC | + |
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Preference number: 3 (lower is better) Translates to: LFVLYTFTACMY*PKENLEEVSSL Trigger: GAGAGAACTGACTTCCTCCAAGTTTTCCTTTGGTCAATACATGCATGCTGTGAAGGTGTACAACACAAATAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| 3UTR TCA 72 bp | TCAACCACAAAAACACTTACTCTGACTGGAGGACAATaGTCCAGGCTATTTTCAATAGCAATAAACACAAGG | + |
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Preference number: 3 (lower is better) Translates to: STTKTLTLTGGQ*SRLFSIAINTR Trigger: CCTTGTGTTTATTGCTATTGAAAATAGCCTGGATCATTGTCCTCCAGTCAGAGTAAGTGTTTTTGTGGTTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR GCA 90 bp | TTCTCTAATCTTCCATCCTCTGTTCCTGGTCAGAAATGCTGTTTTGCACCTTTTCTGCTCTGTGCGCCCTaGGGGCCGCAGCACCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: FSNLPSSVPGQKCCFAPFLLCAP*GPQHPA Trigger: AGCCGGGTGCTGCGGCCCGCAGGGCGCACAGAGCAG...AAAAGGTGCAAAACAGCATTTCTGACCAGGAACAGAGGATGGAAGATTAGAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| CDS-3UTR GCA 90 bp | TTTGTTCCCAGCTCCCCCTGTACATTCACCATGAAATCTACTTATGTATGTGACGTTCGGGCTGCTCTGTaGGCCCTGCGGGCCGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: FVPSSPCTFTMKSTYVCDVRAAL*ALRAAA Trigger: TGCTGCGGCCCGCAGGGCGCACAGAGCAGCCCGAAC...GTCACATACATAAGTAGATTTCATGGTGAATGTACAGGGGGAGCTGGGAACAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR GCA 90 bp | AGCATGCATGTATTGACCAAAGGAAAACTTGGAGGAAGTCAGTTCTCTCCTTTGGTTCGGGCTGCTCTGTaGGCCCTGCGGGCCGCAGCA | + |
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Preference number: 4 (lower is better) Translates to: SMHVLTKGKLGGSQFSPLVRAAL*ALRAAA Trigger: TGCTGCGGCCCGCAGGGCGCACAGAGCAGCCCGAAC...CAAAGGAGAGAACTGACTTCCTCCAAGTTTTCCTTTGGTCAATACATGCATGCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| CDS-3UTR GCA 90 bp | TGTACATTCACCATGAAATCTACTTATGTATGTGACTCAAAGGCACTCAGTTCACTGCTCTGTGCGCCCTaGGGGCCGCAGCACCCGGCT | + |
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Preference number: 4 (lower is better) Translates to: CTFTMKSTYVCDSKALSSLLCAP*GPQHPA Trigger: AGCCGGGTGCTGCGGCCCGCAGGGCGCACAGAGCAG...TGAACTGAGTGCCTTTGAGTCACATACATAAGTAGATTTCATGGTGAATGTACA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| 3UTR CAA 72 bp | ATGTGTGTCCTGGGGATGCAACCCAAACTGTCAGGCTaGATGGCAGGCATCTTTAAAGGCTCAGTCATCTTG | + |
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Preference number: 4 (lower is better) Translates to: MCVLGMQPKLSG*MAGIFKGSVIL Trigger: CAAGATGACTGAGCCTTTAAAGATGCCTGCCATCAAGCCTGACAGTTTGGGTTGCATCCCCAGGACACACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| CDS-3UTR GCA 90 bp | ACAAGGGACCAACACATACAGATCGGGATGAGCATACATCTTATTCTTGACAAGGACAGTAGCAGAATGTaGCGCTGCTGCGCTTGCGCT | + |
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Preference number: 4 (lower is better) Translates to: TRDQHIQIGMSIHLILDKDSSRM*RCCACA Trigger: AGCGCAAGCGCAGCAGCGGCACATTCTGCTACTGTC...CTTGTCAAGAATAAGATGTATGCTCATCCCGATCTGTATGTGTTGGTCCCTTGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR TCA 90 bp | AGCTTAATCTCCCAAACCATGACAAGGGATCTGATGGCTAAAACGAAGAAGATTGGTCAAAGCCGAAATTaGAGCCTGTCCAGCGCCAGC | + |
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Preference number: 4 (lower is better) Translates to: SLISQTMTRDLMAKTKKIGQSRN*SLSSAS Trigger: GCTGGCGCTGGACAGGCTTCAATTTCGGCTTTGACC...AATCTTCTTCGTTTTAGCCATCAGATCCCTTGTCATGGTTTGGGAGATTAAGCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR TCA 90 bp | ACAAGGGACCAACACATACAGATCGGGATGAGCATACATCTTATTCTTGACAAGCACTCTGGTGAGTCATaGGGTTGTTCAGCAGCCACT | + |
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Preference number: 4 (lower is better) Translates to: TRDQHIQIGMSIHLILDKHSGES*GCSAAT Trigger: AGTGGCTGCTGAACAACCTCATGACTCACCAGAGTG...CTTGTCAAGAATAAGATGTATGCTCATCCCGATCTGTATGTGTTGGTCCCTTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR TCA 90 bp | TGGAGGACAATGATCCAGGCTATTTTCAATAGCAATAAACACAAGGGACCAACATGCCGCCAGCCATTCTaGAGGTACCAGAGAATCCTG | + |
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Preference number: 4 (lower is better) Translates to: WRTMIQAIFNSNKHKGPTCRQPF*RYQRIL Trigger: CAGGATTCTCTGGTACCTTCAGAATGGCTGGCGGCA...TGTTGGTCCCTTGTGTTTATTGCTATTGAAAATAGCCTGGATCATTGTCCTCCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR GCA 90 bp | GTTGTTCTAACACGACTGTTTTGTTCCCAGCTCCCCCTGTACATTCACCATGAAATCAAACCATCCAATTaGAGCATGCAAGCTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: VVLTRLFCSQLPLYIHHEIKPSN*SMQAAA Trigger: GGCAGCAGCTTGCATGCTGCAATTGGATGGTTTGAT...TTCATGGTGAATGTACAGGGGGAGCTGGGAACAAAACAGTCGTGTTAGAACAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR GCA 90 bp | GTTGTTCTAACACGACTGTTTTGTTCCCAGCTCCCCCTGTACATTCACCATGAACAAGCGCAATCTAAATaGTATGCTCCTTCGAGGCTG | + |
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Preference number: 4 (lower is better) Translates to: VVLTRLFCSQLPLYIHHEQAQSK*YAPSRL Trigger: CAGCCTCGAAGGAGCATAGCATTTAGATTGCGCTTG...TTCATGGTGAATGTACAGGGGGAGCTGGGAACAAAACAGTCGTGTTAGAACAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR GCA 90 bp | GACCAAAGGAAAACTTGGAGGAAGTCAGTTCTCTCCTTTGACCATGTGTGTCCTTCAAACTCCATCAATTaGAGCATGCAAGCTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: DQRKTWRKSVLSFDHVCPSNSIN*SMQAAA Trigger: GGCAGCAGCTTGCATGCTGCAATTGATGGAGTTTGA...AGGACACACATGGTCAAAGGAGAGAACTGACTTCCTCCAAGTTTTCCTTTGGTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| CDS-3UTR GCA 90 bp | GTTGTTCTAACACGACTGTTTTGTTCCCAGCTCCCCCTGTACATTCACCATGAAAAGTTCATCACCACTTaGTCCTGGTCTTTTTCAAGC | + |
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Preference number: 4 (lower is better) Translates to: VVLTRLFCSQLPLYIHHEKFITT*SWSFSS Trigger: GCTTGAAAAAGACCAGGAGCAAGTGGTGATGAACTT...TTCATGGTGAATGTACAGGGGGAGCTGGGAACAAAACAGTCGTGTTAGAACAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR CCA 90 bp | GCACCAATTGAAAGAGCATTTATGATTGGCCACTTAAACTCCGTCCTTAGCATTGACAGATCCACTACATaGCTGGTTCAGCGTATTGCG | + |
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Preference number: 4 (lower is better) Translates to: APIERAFMIGHLNSVLSIDRSTT*LVQRIA Trigger: CGCAATACGCTGAACCAGCCATGTAGTGGATCTGTC...AATGCTAAGGACGGAGTTTAAGTGGCCAATCATAAATGCTCTTTCAATTGGTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR GCA 90 bp | GACCAAAGGAAAACTTGGAGGAAGTCAGTTCTCTCCTTTGACCATGTGTGTCCTAAATGCGACCTGCAGTaGTTCTATATCAATGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: DQRKTWRKSVLSFDHVCPKCDLQ*FYINVL Trigger: CAGAACATTGATATAGAAGCACTGCAGGTCGCATTT...AGGACACACATGGTCAAAGGAGAGAACTGACTTCCTCCAAGTTTTCCTTTGGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000113679.2 |
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| CDS-3UTR GCA 90 bp | ACAAGGGACCAACACATACAGATCGGGATGAGCATACATCTTATTCTTGACAAGCTGCTCAATGATCCTTaGAGAAGCCAGATCACTGAT | + |
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Preference number: 4 (lower is better) Translates to: TRDQHIQIGMSIHLILDKLLNDP*RSQITD Trigger: ATCAGTGATCTGGCTTCTGCAAGGATCATTGAGCAG...CTTGTCAAGAATAAGATGTATGCTCATCCCGATCTGTATGTGTTGGTCCCTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR CCA 90 bp | TTTGTTCCCAGCTCCCCCTGTACATTCACCATGAAATCTACTTATGTATGTGACCAGTTCTCACAGAGATaGTCTCCTTCATTGTCTCAC | + |
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Preference number: 4 (lower is better) Translates to: FVPSSPCTFTMKSTYVCDQFSQR*SPSLSH Trigger: GTGAGACAATGAAGGAGACCATCTCTGTGAGAACTG...GTCACATACATAAGTAGATTTCATGGTGAATGTACAGGGGGAGCTGGGAACAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR CCA 90 bp | AGCTTAATCTCCCAAACCATGACAAGGGATCTGATGGCTAAAACGAAGAAGATTGATCCACTACATGGCTaGTTCAGCGTATTGCGTTTG | + |
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Preference number: 4 (lower is better) Translates to: SLISQTMTRDLMAKTKKIDPLHG*FSVLRL Trigger: CAAACGCAATACGCTGAACCAGCCATGTAGTGGATC...AATCTTCTTCGTTTTAGCCATCAGATCCCTTGTCATGGTTTGGGAGATTAAGCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR TCA 90 bp | TTTGTTCCCAGCTCCCCCTGTACATTCACCATGAAATCTACTTATGTATGTGACTCTTTATTGATTTCTTaGGGCCCCACTTCACTGTCT | + |
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Preference number: 4 (lower is better) Translates to: FVPSSPCTFTMKSTYVCDSLLIS*GPTSLS Trigger: AGACAGTGAAGTGGGGCCTCAAGAAATCAATAAAGA...GTCACATACATAAGTAGATTTCATGGTGAATGTACAGGGGGAGCTGGGAACAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR TCA 90 bp | ATTGAAAGAGCATTTATGATTGGCCACTTAAACTCCGTCCTTAGCATTCTCTTATTCGAGGCTGTAAGCTaGCAGATCCACTACATGGCT | + |
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Preference number: 4 (lower is better) Translates to: IERAFMIGHLNSVLSILLFEAVS*QIHYMA Trigger: AGCCATGTAGTGGATCTGTCAGCTTACAGCCTCGAA...TAAGAGAATGCTAAGGACGGAGTTTAAGTGGCCAATCATAAATGCTCTTTCAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR TCA 90 bp | ATTGAAAGAGCATTTATGATTGGCCACTTAAACTCCGTCCTTAGCATTCTCTTAGAGAATCCTGCTCAATaGTCCTTGCAGAAGCCAGAT | + |
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Preference number: 4 (lower is better) Translates to: IERAFMIGHLNSVLSILLENPAQ*SLQKPD Trigger: ATCTGGCTTCTGCAAGGATCATTGAGCAGGATTCTC...TAAGAGAATGCTAAGGACGGAGTTTAAGTGGCCAATCATAAATGCTCTTTCAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR GCA 90 bp | TGTACATTCACCATGAAATCTACTTATGTATGTGACTCAAAGGCACTCAGTTCAAAATGCGACCTGCAGTaGTTCTATATCAATGTTCTG | + |
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Preference number: 4 (lower is better) Translates to: CTFTMKSTYVCDSKALSSKCDLQ*FYINVL Trigger: CAGAACATTGATATAGAAGCACTGCAGGTCGCATTT...TGAACTGAGTGCCTTTGAGTCACATACATAAGTAGATTTCATGGTGAATGTACA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR CAA 90 bp | TGGAGGACAATGATCCAGGCTATTTTCAATAGCAATAAACACAAGGGACCAACAAGATGGTCTCCTTCATaGTCTCACCGCACTGCTGTA | + |
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Preference number: 5 (lower is better) Translates to: WRTMIQAIFNSNKHKGPTRWSPS*SHRTAV Trigger: TACAGCAGTGCGGTGAGACAATGAAGGAGACCATCT...TGTTGGTCCCTTGTGTTTATTGCTATTGAAAATAGCCTGGATCATTGTCCTCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR CAA 90 bp | GTTGTTCTAACACGACTGTTTTGTTCCCAGCTCCCCCTGTACATTCACCATGAATTCTTTATTGATTTCTaGAGGCCCCACTTCACTGTC | + |
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Preference number: 5 (lower is better) Translates to: VVLTRLFCSQLPLYIHHEFFIDF*RPHFTV Trigger: GACAGTGAAGTGGGGCCTCAAGAAATCAATAAAGAA...TTCATGGTGAATGTACAGGGGGAGCTGGGAACAAAACAGTCGTGTTAGAACAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR CAA 90 bp | ATTGAAAGAGCATTTATGATTGGCCACTTAAACTCCGTCCTTAGCATTCTCTTAAGGTCAAAGCCGAAATaGAAGCCTGTCCAGCGCCAG | + |
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Preference number: 5 (lower is better) Translates to: IERAFMIGHLNSVLSILLRSKPK*KPVQRQ Trigger: CTGGCGCTGGACAGGCTTCAATTTCGGCTTTGACCT...TAAGAGAATGCTAAGGACGGAGTTTAAGTGGCCAATCATAAATGCTCTTTCAAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR CAA 90 bp | GCACCAATTGAAAGAGCATTTATGATTGGCCACTTAAACTCCGTCCTTAGCATTTATCAAACCATCCAATaGCAGCATGCAAGCTGCTGC | + |
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Preference number: 5 (lower is better) Translates to: APIERAFMIGHLNSVLSIYQTIQ*QHASCC Trigger: GCAGCAGCTTGCATGCTGCAATTGGATGGTTTGATA...AATGCTAAGGACGGAGTTTAAGTGGCCAATCATAAATGCTCTTTCAATTGGTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR CAA 90 bp | GCACCAATTGAAAGAGCATTTATGATTGGCCACTTAAACTCCGTCCTTAGCATTCAAGTTCATCACCACTaGCTCCTGGTCTTTTTCAAG | + |
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Preference number: 5 (lower is better) Translates to: APIERAFMIGHLNSVLSIQVHHH*LLVFFK Trigger: CTTGAAAAAGACCAGGAGCAAGTGGTGATGAACTTG...AATGCTAAGGACGGAGTTTAAGTGGCCAATCATAAATGCTCTTTCAATTGGTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS-3UTR CAA 90 bp | AGCTTAATCTCCCAAACCATGACAAGGGATCTGATGGCTAAAACGAAGAAGATTTTTATACTGAGTTCTTaGAAAAGCTCCACACTCTGG | + |
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Preference number: 5 (lower is better) Translates to: SLISQTMTRDLMAKTKKIFILSS*KSSTLW Trigger: CCAGAGTGTGGAGCTTTTCAAAGAACTCAGTATAAA...AATCTTCTTCGTTTTAGCCATCAGATCCCTTGTCATGGTTTGGGAGATTAAGCT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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| CDS GCA 72 bp | CTGGTCTTTTTCAAGCGTCAGTATTTGGTAGCCAGTTaGTCTACTGCATATGAGTTTCCCACTACTGTCAAA | + |
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Preference number: 6 (lower is better) Translates to: LVFFKRQYLVAS*STAYEFPTTVK Trigger: TTTGACAGTAGTGGGAAACTCATATGCAGTAGAGCAACTGGCTACCAAATACTGACGCTTGAAAAAGACCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000001185.14 |
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