Pregenerated sensors for GLYCAM1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022491Ensembl transcript IDs: ENSMUST00000023134.5, ENSMUST00000228060.2, ENSMUST00000228895.2
Found 74 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGAGGGCAGACTGAGAGGTaGTGGTCAGATGAGCAGAAT | + |
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Preference number: 2 (lower is better) Translates to: GGGQMSRMWLMKAPPSMGGQTER*WSDEQN Trigger: ATTCTGCTCATCTGACCACCACCTCTCAGTCTGCCC...TCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| 3UTR-3UTR CCA 90 bp | AGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGCAGACTGAGAGGTGGTaGTCAGATGAGCAGAATGTG | + |
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Preference number: 2 (lower is better) Translates to: RGGGQMSRMWLMKAPPSMQTERW*SDEQNV Trigger: CACATTCTGCTCATCTGACCACCACCTCTCAGTCTG...CATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCT 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| 3UTR CCA 72 bp | GGCAGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTaGCTGATGAAGGCACCACCTAGCATGGGACTTAGT | + |
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Preference number: 3 (lower is better) Translates to: GRLRGGGQMSRM*LMKAPPSMGLS Trigger: ACTAAGTCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| 3UTR GCA 72 bp | CTTCGTGATACGACTGGCACCAGAGATTATGTCTTCTaGACCAGTTACAAATCCTTCAATTATTTTACCCAG | + |
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Preference number: 3 (lower is better) Translates to: LRDTTGTRDYVF*TSYKSFNYFTQ Trigger: CTGGGTAAAATAATTGAAGGATTTGTAACTGGTGCAGAAGACATAATCTCTGGTGCCAGTCGTATCACGAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS-3UTR TCA 90 bp | GGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACTTGAGATGACCCGCTCCTaGGCCCATCCTGGGCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: GGQMSRMWLMKAPPSMGLEMTRS*AHPGPL Trigger: AAGAGGCCCAGGATGGGCTCAGGAGCGGGTCATCTC...AAGTCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | GGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACACTGGTGTAGCTGGTaGGAGTGGACTGGGCAGCTG | + |
|
Preference number: 4 (lower is better) Translates to: GGGQMSRMWLMKAPPSMGHWCSW*EWTGQL Trigger: CAGCTGCCCAGTCCACTCCCACCAGCTACACCAGTG...TCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR TCA 90 bp | CAGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCCTGGCTCATACCAGCTaGGGTGGTGGGTCTTGTGGT | + |
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Preference number: 4 (lower is better) Translates to: QTERWWSDEQNVADEGTTLAHTS*GGGSCG Trigger: ACCACAAGACCCACCACCTCAGCTGGTATGAGCCAG...GGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | CAGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCCTGGTGGGAGTGGACTaGGCAGCTGGAATGGCATCT | + |
|
Preference number: 4 (lower is better) Translates to: QTERWWSDEQNVADEGTTLVGVD*AAGMAS Trigger: AGATGCCATTCCAGCTGCCCAGTCCACTCCCACCAG...GGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | AGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGCACTGGTGTAGCTGGTaGGAGTGGACTGGGCAGCTG | + |
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Preference number: 4 (lower is better) Translates to: RGGGQMSRMWLMKAPPSMHWCSW*EWTGQL Trigger: CAGCTGCCCAGTCCACTCCCACCAGCTACACCAGTG...CATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | GGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACTTTGTAGCTGGTGGGAGTaGACTGGGCAGCTGGAATGG | + |
|
Preference number: 4 (lower is better) Translates to: GGQMSRMWLMKAPPSMGLCSWWE*TGQLEW Trigger: CCATTCCAGCTGCCCAGTCCACTCCCACCAGCTACA...AAGTCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | AGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGACTGGGCAGCTGGAATaGCATCTGTGGGCTGAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: RGGGQMSRMWLMKAPPSMTGQLE*HLWAES Trigger: AGACTCAGCCCACAGATGCCATTCCAGCTGCCCAGT...CATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | CAGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCAGGTGGTGGGTCTTGTaGTCTCTTCCAGCTGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: QTERWWSDEQNVADEGTTRWWVL*SLPAEM Trigger: CATCTCAGCTGGAAGAGACCACAAGACCCACCACCT...GGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | CAGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTTGCAGCTGAGGTGGTaGGTCTTGTGGTCTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: QTERWWSDEQNVADEGTTLQLRW*VLWSLP Trigger: TGGAAGAGACCACAAGACCCACCACCTCAGCTGCAA...GGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCTG 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023134.5 |
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| CDS-3UTR CCA 90 bp | GGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGATGGTTGCAGCTGAGGTaGTGGGTCTTGTGGTCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: GGGQMSRMWLMKAPPSMGWLQLR*WVLWSL Trigger: AAGAGACCACAAGACCCACCACCTCAGCTGCAACCA...TCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023134.5 |
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| CDS-3UTR TCA 90 bp | AGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGCCATCCTGGGCCTCTTaGTTCTCTGGCTTGGTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: RGGGQMSRMWLMKAPPSMPSWAS*FSGLVD Trigger: ATCTACCAAGCCAGAGAATCAAGAGGCCCAGGATGG...CATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR TCA 90 bp | AGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTCCATCCTGGGCCTCTTaGTTCTCTGGCTTGGTAGAT | + |
|
Preference number: 4 (lower is better) Translates to: RLRGGGQMSRMWLMKAPPPSWAS*FSGLVD Trigger: ATCTACCAAGCCAGAGAATCAAGAGGCCCAGGATGG...AGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | AGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGGTGGTGGGTCTTGTaGTCTCTTCCAGCTGAGATG | + |
|
Preference number: 4 (lower is better) Translates to: RLRGGGQMSRMWLMKAPPRWWVL*SLPAEM Trigger: CATCTCAGCTGGAAGAGACCACAAGACCCACCACCT...AGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | GGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACTTGATTTTCCTCTGAGGTaGTTGCAGCTGAGGTGGTGG | + |
|
Preference number: 4 (lower is better) Translates to: GGQMSRMWLMKAPPSMGLDFPLR*LQLRWW Trigger: CCACCACCTCAGCTGCAACCACCTCAGAGGAAAATC...AAGTCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023134.5 |
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| CDS-3UTR TCA 90 bp | AGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTCTCCACTGTCTGGCTTaGCTTGGTCAGATTTTCCTC | + |
|
Preference number: 4 (lower is better) Translates to: RLRGGGQMSRMWLMKAPPLHCLA*LGQIFL Trigger: GAGGAAAATCTGACCAAGTCAAGCCAGACAGTGGAG...AGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023134.5 |
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| CDS-3UTR CCA 90 bp | CAGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCCTGTCTGGCTTGACTTaGTCAGATTTTCCTCTGAGG | + |
|
Preference number: 4 (lower is better) Translates to: QTERWWSDEQNVADEGTTLSGLT*SDFPLR Trigger: CCTCAGAGGAAAATCTGACCAAGTCAAGCCAGACAG...GGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023134.5 |
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| CDS-3UTR CCA 90 bp | GGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACTTTCATACCAGCTGAGGTaGTGGGTCTTGTGGTCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: GGQMSRMWLMKAPPSMGLSYQLR*WVLWSL Trigger: AAGAGACCACAAGACCCACCACCTCAGCTGGTATGA...AAGTCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | AGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGATCTTCCTTCTTCCCTaGCTCATACCAGCTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: RGGGQMSRMWLMKAPPSMIFLLP*LIPAEV Trigger: CACCTCAGCTGGTATGAGCCAGGGAAGAAGGAAGAT...CATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS-3UTR TCA 90 bp | GGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACTTAAATCAGCTCTTCTCTaGAGATGGAAGGCTCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: GGQMSRMWLMKAPPSMGLKSALL*RWKAPW Trigger: CCAAGGAGCCTTCCATCTTCAGAGAAGAGCTGATTT...AAGTCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | GGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGATTTGAAGTTCATCTTTaGACCCAGGCAGGAGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: GGGQMSRMWLMKAPPSMGFEVHL*TQAGEQ Trigger: TTGCTCTCCTGCCTGGGTCCAAAGATGAACTTCAAA...TCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | GGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACTGGAATGGCATCTGTaGGCTGAGTCTTCATTTGAA | + |
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Preference number: 4 (lower is better) Translates to: GGGQMSRMWLMKAPPSMGLEWHL*AESSFE Trigger: TTCAAATGAAGACTCAGCCCACAGATGCCATTCCAG...TCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | GGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGAGGCCTCTTGATTCTCTaGCTTGGTAGATTCTATCAC | + |
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Preference number: 4 (lower is better) Translates to: GGGQMSRMWLMKAPPSMGGLLIL*LGRFYH Trigger: GTGATAGAATCTACCAAGCCAGAGAATCAAGAGGCC...TCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | GGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACTTTTTGAAGTTCATCTTTaGACCCAGGCAGGAGAGCAA | + |
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Preference number: 4 (lower is better) Translates to: GGQMSRMWLMKAPPSMGLFEVHL*TQAGEQ Trigger: TTGCTCTCCTGCCTGGGTCCAAAGATGAACTTCAAA...AAGTCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | GTGATACGACTGGCACCAGAGATTATGTCTTCTGCACCAGTTACAAATCCTTCATGTAGCTGGTGGGAGTaGACTGGGCAGCTGGAATGG | + |
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Preference number: 4 (lower is better) Translates to: VIRLAPEIMSSAPVTNPSCSWWE*TGQLEW Trigger: CCATTCCAGCTGCCCAGTCCACTCCCACCAGCTACA...TGAAGGATTTGTAACTGGTGCAGAAGACATAATCTCTGGTGCCAGTCGTATCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | GGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACTTGGCCTCTTGATTCTCTaGCTTGGTAGATTCTATCAC | + |
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Preference number: 4 (lower is better) Translates to: GGQMSRMWLMKAPPSMGLGLLIL*LGRFYH Trigger: GTGATAGAATCTACCAAGCCAGAGAATCAAGAGGCC...AAGTCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | CGACTGGCACCAGAGATTATGTCTTCTGCACCAGTTACAAATCCTTCAATTATTCTGGTGGGAGTGGACTaGGCAGCTGGAATGGCATCT | + |
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Preference number: 4 (lower is better) Translates to: RLAPEIMSSAPVTNPSIILVGVD*AAGMAS Trigger: AGATGCCATTCCAGCTGCCCAGTCCACTCCCACCAG...AATAATTGAAGGATTTGTAACTGGTGCAGAAGACATAATCTCTGGTGCCAGTCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS-3UTR GCA 90 bp | AGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGAGAGATTATGTCTTCTaGACCAGTTACAAATCCTTC | + |
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Preference number: 4 (lower is better) Translates to: RGGGQMSRMWLMKAPPSMRDYVF*TSYKSF Trigger: GAAGGATTTGTAACTGGTGCAGAAGACATAATCTCT...CATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023134.5 |
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| CDS-3UTR TCA 90 bp | GTGATACGACTGGCACCAGAGATTATGTCTTCTGCACCAGTTACAAATCCTTCAAAATCAGCTCTTCTCTaGAGATGGAAGGCTCCTTGG | + |
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Preference number: 4 (lower is better) Translates to: VIRLAPEIMSSAPVTNPSKSALL*RWKAPW Trigger: CCAAGGAGCCTTCCATCTTCAGAGAAGAGCTGATTT...TGAAGGATTTGTAACTGGTGCAGAAGACATAATCTCTGGTGCCAGTCGTATCAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | TTACAAATCCTTCAATTATTTTACCCAGTTCTTCCTCCACTGTCTGGCTTGACTTACCAGCTGAGGTGGTaGGTCTTGTGGTCTCTTCCA | + |
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Preference number: 4 (lower is better) Translates to: LQILQLFYPVLPPLSGLTYQLRW*VLWSLP Trigger: TGGAAGAGACCACAAGACCCACCACCTCAGCTGGTA...AGTCAAGCCAGACAGTGGAGGAAGAACTGGGTAAAATAATTGAAGGATTTGTAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | ACAAATCCTTCAATTATTTTACCCAGTTCTTCCTCCACTGTCTGGCTTGACTTGCTGGAATGGCATCTGTaGGCTGAGTCTTCATTTGAA | + |
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Preference number: 4 (lower is better) Translates to: TNPSIILPSSSSTVWLDLLEWHL*AESSFE Trigger: TTCAAATGAAGACTCAGCCCACAGATGCCATTCCAG...CAAGTCAAGCCAGACAGTGGAGGAAGAACTGGGTAAAATAATTGAAGGATTTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS-3UTR CCA 90 bp | TTACAAATCCTTCAATTATTTTACCCAGTTCTTCCTCCACTGTCTGGCTTGACTGATTTTCCTCTGAGGTaGTTGCACCTCCCAAGACAT | + |
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Preference number: 4 (lower is better) Translates to: LQILQLFYPVLPPLSGLTDFPLR*LHLPRH Trigger: ATGTCTTGGGAGGTGCAACCACCTCAGAGGAAAATC...AGTCAAGCCAGACAGTGGAGGAAGAACTGGGTAAAATAATTGAAGGATTTGTAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS CCA 90 bp | CCTTGGAAAGGTCCTTACTGGAAGTACTCTCCTCACTGGTGTAGCTaGTGGGAGTGGACTGGGCAGCTGGAATGGCATCTGTGGGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: PWKGPYWKYSPHWCS*WEWTGQLEWHLWAE Trigger: CTCAGCCCACAGATGCCATTCCAGCTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGGAGAGTACTTCCAGTAAGGACCTTTCCAAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS CCA 90 bp | TGGAAGGCTCCTTGGAAAGGTCCTTACTGGAAGTACTCTCCTCACTaGTGTAGCTGGTGGGAGTGGACTGGGCAGTGGCATCTGTGGGCT | + |
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Preference number: 5 (lower is better) Translates to: WKAPWKGPYWKYSPH*CSWWEWTGQWHLWA Trigger: AGCCCACAGATGCCACTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGGAGAGTACTTCCAGTAAGGACCTTTCCAAGGAGCCTTCCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228060.2 |
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| CDS-3UTR CAA 90 bp | GGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGATTTCCTCTGAGGTGGTaGCAGCTGAGGTGGTGGGTC | + |
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Preference number: 5 (lower is better) Translates to: GGGQMSRMWLMKAPPSMGFPLRW*QLRWWV Trigger: GACCCACCACCTCAGCTGCAACCACCTCAGAGGAAA...TCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023134.5 |
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| CDS CCA 90 bp | TGGAAAGGTCCTTACTGGAAGTACTCTCCTCACTGGTGTAGCTGGTaGGAGTGGACTGGGCAGCTGGAATGGCATCTGTGGGCTGAGTCT | + |
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Preference number: 5 (lower is better) Translates to: WKGPYWKYSPHWCSW*EWTGQLEWHLWAES Trigger: AGACTCAGCCCACAGATGCCATTCCAGCTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGGAGAGTACTTCCAGTAAGGACCTTTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS CCA 90 bp | CCTCACTGGTGTAGCTGGTGGGAGTGGACTGGGCAGTGGCATCTGTaGGCTGAGTCTTCATTTGAAGTTCATCTTTGGACCCAGGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: PHWCSWWEWTGQWHL*AESSFEVHLWTQAG Trigger: TCCTGCCTGGGTCCAAAGATGAACTTCAAATGAAGACTCAGCCCACAGATGCCACTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228060.2 |
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| CDS CCA 90 bp | CCTTGGAAAGGTCCTTACTGGAAGTACTCTCCTCACTGGTGTAGCTaGTGGGAGTGGACTGGGCAGTGGCATCTGTGGGCTGAGTCTTCA | + |
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Preference number: 5 (lower is better) Translates to: PWKGPYWKYSPHWCS*WEWTGQWHLWAESS Trigger: TGAAGACTCAGCCCACAGATGCCACTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGGAGAGTACTTCCAGTAAGGACCTTTCCAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228060.2 |
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| CDS-3UTR CAA 90 bp | CAGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCCCCATCCTGGGCCTCTaGATTCTCTGGCTTGGTAGA | + |
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Preference number: 5 (lower is better) Translates to: QTERWWSDEQNVADEGTTPILGL*ILWLGR Trigger: TCTACCAAGCCAGAGAATCAAGAGGCCCAGGATGGG...GGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CAA 90 bp | GGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACTTCTGAGGTGGTGGGTCTaGTGGTCTCTTCCAGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: GGQMSRMWLMKAPPSMGLLRWWV*WSLPAE Trigger: CTCAGCTGGAAGAGACCACAAGACCCACCACCTCAG...AAGTCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS CCA 90 bp | GGTCCTTACTGGAAGTACTCTCCTCACTGGTGTAGCTGGTGGGAGTaGACTGGGCAGCTGGAATGGCATCTGTGGGCTGAGTCTTCATTT | + |
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Preference number: 5 (lower is better) Translates to: GPYWKYSPHWCSWWE*TGQLEWHLWAESSF Trigger: AAATGAAGACTCAGCCCACAGATGCCATTCCAGCTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGGAGAGTACTTCCAGTAAGGACC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS CCA 90 bp | CTTCCTCCACTGTCTGGCTTGACTTGGTCAGATTTTCCTCTGAGGTaGTTGCAGCTGAGGTGGTGGGTCTTGTGGTCTCTTCCAGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LPPLSGLTWSDFPLR*LQLRWWVLWSLPAE Trigger: CTCAGCTGGAAGAGACCACAAGACCCACCACCTCAGCTGCAACCACCTCAGAGGAAAATCTGACCAAGTCAAGCCAGACAGTGGAGGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 |
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| CDS CCA 90 bp | TCTCCTCACTGGTGTAGCTGGTGGGAGTGGACTGGGCAGCTGGAATaGCATCTGTGGGCTGAGTCTTCATTTGAAGTTCATCTTTGGACC | + |
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Preference number: 5 (lower is better) Translates to: SPHWCSWWEWTGQLE*HLWAESSFEVHLWT Trigger: GGTCCAAAGATGAACTTCAAATGAAGACTCAGCCCACAGATGCCATTCCAGCTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGGAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS CCA 90 bp | AAGTACTCTCCTCACTGGTGTAGCTGGTGGGAGTGGACTGGGCAGTaGCATCTGTGGGCTGAGTCTTCATTTGAAGTTCATCTTTGGACC | + |
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Preference number: 5 (lower is better) Translates to: KYSPHWCSWWEWTGQ*HLWAESSFEVHLWT Trigger: GGTCCAAAGATGAACTTCAAATGAAGACTCAGCCCACAGATGCCACTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGGAGAGTACTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228060.2 |
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| CDS-3UTR CAA 90 bp | GGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGAAAGATGGAAGGCTCCTaGGAAAGGTCCTTACTGGAA | + |
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Preference number: 5 (lower is better) Translates to: GGGQMSRMWLMKAPPSMGKMEGS*ERSLLE Trigger: TTCCAGTAAGGACCTTTCCAAGGAGCCTTCCATCTT...TCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CAA 90 bp | AGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTCCTCCACTGTCTGGCTaGACTTGGTCAGATTTTCCT | + |
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Preference number: 5 (lower is better) Translates to: RLRGGGQMSRMWLMKAPPPPLSG*TWSDFP Trigger: AGGAAAATCTGACCAAGTCAAGCCAGACAGTGGAGG...AGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023134.5 |
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| CDS-3UTR CAA 90 bp | GGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACTTGGGCTGAGTCTTCATTaGAAGTTCATCTTTGGACCC | + |
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Preference number: 5 (lower is better) Translates to: GGQMSRMWLMKAPPSMGLGLSLH*KFIFGP Trigger: GGGTCCAAAGATGAACTTCAAATGAAGACTCAGCCC...AAGTCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CAA 90 bp | GGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTAGCATGGGACTTAAGATGGAAGGCTCCTaGGAAAGGTCCTTACTGGAA | + |
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Preference number: 5 (lower is better) Translates to: GGQMSRMWLMKAPPSMGLKMEGS*ERSLLE Trigger: TTCCAGTAAGGACCTTTCCAAGGAGCCTTCCATCTT...AAGTCCCATGCTAGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CAA 90 bp | AGACTGAGAGGTGGTGGTCAGATGAGCAGAATGTGGCTGATGAAGGCACCACCTATCACCACATTATCTTaGGAAATCAGCTCTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: RLRGGGQMSRMWLMKAPPITTLS*EISSSL Trigger: CAGAGAAGAGCTGATTTCCAAAGATAATGTGGTGAT...AGGTGGTGCCTTCATCAGCCACATTCTGCTCATCTGACCACCACCTCTCAGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS-3UTR CAA 90 bp | ACAAATCCTTCAATTATTTTACCCAGTTCTTCCTCCACTGTCTGGCTTGACTTGCCCATCCTGGGCCTCTaGATTCTCTGGCTTGGTAGA | + |
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Preference number: 5 (lower is better) Translates to: TNPSIILPSSSSTVWLDLPILGL*ILWLGR Trigger: TCTACCAAGCCAGAGAATCAAGAGGCCCAGGATGGG...CAAGTCAAGCCAGACAGTGGAGGAAGAACTGGGTAAAATAATTGAAGGATTTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS-3UTR CAA 90 bp | TTACAAATCCTTCAATTATTTTACCCAGTTCTTCCTCCACTGTCTGGCTTGACTCTGAGGTGGTGGGTCTaGTGGTCTCTTCCAGCTGAG | + |
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Preference number: 5 (lower is better) Translates to: LQILQLFYPVLPPLSGLTLRWWV*WSLPAE Trigger: CTCAGCTGGAAGAGACCACAAGACCCACCACCTCAG...AGTCAAGCCAGACAGTGGAGGAAGAACTGGGTAAAATAATTGAAGGATTTGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS-3UTR CAA 90 bp | GTGATACGACTGGCACCAGAGATTATGTCTTCTGCACCAGTTACAAATCCTTCAATCACCACATTATCTTaGGAAATCAGCTCTTCTCTG | + |
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Preference number: 5 (lower is better) Translates to: VIRLAPEIMSSAPVTNPSITTLS*EISSSL Trigger: CAGAGAAGAGCTGATTTCCAAAGATAATGTGGTGAT...TGAAGGATTTGTAACTGGTGCAGAAGACATAATCTCTGGTGCCAGTCGTATCAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS CCA 72 bp | TGGAAGTACTCTCCTCACTGGTGTAGCTGGTGGGAGTaGACTGGGCAGCTGGAATGGCATCTGTGGGCTGAG | + |
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Preference number: 6 (lower is better) Translates to: WKYSPHWCSWWE*TGQLEWHLWAE Trigger: CTCAGCCCACAGATGCCATTCCAGCTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGGAGAGTACTTCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS CCA 72 bp | GGTCCTTACTGGAAGTACTCTCCTCACTGGTGTAGCTaGTGGGAGTGGACTGGGCAGCTGGAATGGCATCTG | + |
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Preference number: 6 (lower is better) Translates to: GPYWKYSPHWCS*WEWTGQLEWHL Trigger: CAGATGCCATTCCAGCTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGGAGAGTACTTCCAGTAAGGACC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS CCA 72 bp | CTCACTGGTGTAGCTGGTGGGAGTGGACTGGGCAGCTaGAATGGCATCTGTGGGCTGAGTCTTCATTTGAAG | + |
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Preference number: 6 (lower is better) Translates to: LTGVAGGSGLGS*NGICGLSLHLK Trigger: CTTCAAATGAAGACTCAGCCCACAGATGCCATTCCAGCTGCCCAGTCCACTCCCACCAGCTACACCAGTGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS CCA 72 bp | CCTTGGAAAGGTCCTTACTGGAAGTACTCTCCTCACTaGTGTAGCTGGTGGGAGTGGACTGGGCAGCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: PWKGPYWKYSPH*CSWWEWTGQLE Trigger: TTCCAGCTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGGAGAGTACTTCCAGTAAGGACCTTTCCAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS CCA 72 bp | CCTTGGAAAGGTCCTTACTGGAAGTACTCTCCTCACTaGTGTAGCTGGTGGGAGTGGACTGGGCAGTGGCAT | + |
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Preference number: 6 (lower is better) Translates to: PWKGPYWKYSPH*CSWWEWTGQWH Trigger: ATGCCACTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGGAGAGTACTTCCAGTAAGGACCTTTCCAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228060.2 |
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| CDS CAA 90 bp | AGTGGACTGGGCAGCTGGAATGGCATCTGTGGGCTGAGTCTTCATTaGAAGTTCATCTTTGGACCCAGGCAGGAGAGCAAGAGAGGTGGC | + |
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Preference number: 6 (lower is better) Translates to: SGLGSWNGICGLSLH*KFIFGPRQESKRGG Trigger: GCCACCTCTCTTGCTCTCCTGCCTGGGTCCAAAGATGAACTTCAAATGAAGACTCAGCCCACAGATGCCATTCCAGCTGCCCAGTCCACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228895.2 |
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| CDS CAA 90 bp | CCTCCACTGTCTGGCTTGACTTGGTCAGATTTTCCTCTGAGGTGGTaGCAGCTGAGGTGGTGGGTCTTGTGGTCTCTTCCAGCTGAGATG | + |
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Preference number: 6 (lower is better) Translates to: PPLSGLTWSDFPLRW*QLRWWVLWSLPAEM Trigger: CATCTCAGCTGGAAGAGACCACAAGACCCACCACCTCAGCTGCAACCACCTCAGAGGAAAATCTGACCAAGTCAAGCCAGACAGTGGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 |
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| CDS TCA 72 bp | CCAAGACATCTTCCTTCTTCCCTGGCTCATACCAGCTaGGGTGGTGGGTCTTGTGGTCTCTTCCAGCTGAGA | + |
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Preference number: 6 (lower is better) Translates to: PRHLPSSLAHTS*GGGSCGLFQLR Trigger: TCTCAGCTGGAAGAGACCACAAGACCCACCACCTCAGCTGGTATGAGCCAGGGAAGAAGGAAGATGTCTTGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228895.2 |
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| CDS CCA 72 bp | TGGTCAGATTTTCCTCTGAGGTGGTTGCAGCTGAGGTaGTGGGTCTTGTGGTCTCTTCCAGCTGAGATGACC | + |
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Preference number: 6 (lower is better) Translates to: WSDFPLRWLQLR*WVLWSLPAEMT Trigger: GGTCATCTCAGCTGGAAGAGACCACAAGACCCACCACCTCAGCTGCAACCACCTCAGAGGAAAATCTGACCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 |
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| CDS CCA 72 bp | CCTCACTGGTGTAGCTGGTGGGAGTGGACTGGGCAGTaGCATCTGTGGGCTGAGTCTTCATTTGAAGTTCAT | + |
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Preference number: 6 (lower is better) Translates to: PHWCSWWEWTGQ*HLWAESSFEVH Trigger: ATGAACTTCAAATGAAGACTCAGCCCACAGATGCCACTGCCCAGTCCACTCCCACCAGCTACACCAGTGAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000228060.2 |
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| CDS CCA 72 bp | CTGTCTGGCTTGACTTGGTCAGATTTTCCTCTGAGGTaGTTGCAGCTGAGGTGGTGGGTCTTGTGGTCTCTT | + |
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Preference number: 6 (lower is better) Translates to: LSGLTWSDFPLR*LQLRWWVLWSL Trigger: AAGAGACCACAAGACCCACCACCTCAGCTGCAACCACCTCAGAGGAAAATCTGACCAAGTCAAGCCAGACAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 |
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| CDS CAA 72 bp | TCTGGCTTGACTTGGTCAGATTTTCCTCTGAGGTGGTaGCAGCTGAGGTGGTGGGTCTTGTGGTCTCTTCCA | + |
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Preference number: 6 (lower is better) Translates to: SGLTWSDFPLRW*QLRWWVLWSLP Trigger: TGGAAGAGACCACAAGACCCACCACCTCAGCTGCAACCACCTCAGAGGAAAATCTGACCAAGTCAAGCCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 |
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| CDS CCA 72 bp | CCCGCTCCTGAGCCCATCCTGGGCCTCTTGATTCTCTaGCTTGGTAGATTCTATCACCACATTATCTTTGGA | + |
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Preference number: 6 (lower is better) Translates to: PAPEPILGLLIL*LGRFYHHIIFG Trigger: TCCAAAGATAATGTGGTGATAGAATCTACCAAGCCAGAGAATCAAGAGGCCCAGGATGGGCTCAGGAGCGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 ENSMUST00000228895.2 |
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| CDS CAA 90 bp | CCTTCAATTATTTTACCCAGTTCTTCCTCCACTGTCTGGCTTGACTaGGTCAGATTTTCCTCTGAGGTGGTTGCAGCTGAGGTGGTGGGT | + |
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Preference number: 6 (lower is better) Translates to: PSIILPSSSSTVWLD*VRFSSEVVAAEVVG Trigger: ACCCACCACCTCAGCTGCAACCACCTCAGAGGAAAATCTGACCAAGTCAAGCCAGACAGTGGAGGAAGAACTGGGTAAAATAATTGAAGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 |
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| CDS CAA 90 bp | CAAATCCTTCAATTATTTTACCCAGTTCTTCCTCCACTGTCTGGCTaGACTTGGTCAGATTTTCCTCTGAGGTGGTTGCAGCTGAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: QILQLFYPVLPPLSG*TWSDFPLRWLQLRW Trigger: CCACCTCAGCTGCAACCACCTCAGAGGAAAATCTGACCAAGTCAAGCCAGACAGTGGAGGAAGAACTGGGTAAAATAATTGAAGGATTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 |
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| CDS CAA 72 bp | TTGGAAATCAGCTCTTCTCTGAAGATGGAAGGCTCCTaGGAAAGGTCCTTACTGGAAGTACTCTCCTCACTG | + |
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Preference number: 6 (lower is better) Translates to: LEISSSLKMEGS*ERSLLEVLSSL Trigger: CAGTGAGGAGAGTACTTCCAGTAAGGACCTTTCCAAGGAGCCTTCCATCTTCAGAGAAGAGCTGATTTCCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 ENSMUST00000228895.2 |
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| CDS CAA 72 bp | CAATTATTTTACCCAGTTCTTCCTCCACTGTCTGGCTaGACTTGGTCAGATTTTCCTCTGAGGTGGTTGCAG | + |
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Preference number: 6 (lower is better) Translates to: QLFYPVLPPLSG*TWSDFPLRWLQ Trigger: CTGCAACCACCTCAGAGGAAAATCTGACCAAGTCAAGCCAGACAGTGGAGGAAGAACTGGGTAAAATAATTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 |
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| CDS TCA 72 bp | CTATCACCACATTATCTTTGGAAATCAGCTCTTCTCTaGAGATGGAAGGCTCCTTGGAAAGGTCCTTACTGG | + |
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Preference number: 6 (lower is better) Translates to: LSPHYLWKSALL*RWKAPWKGPYW Trigger: CCAGTAAGGACCTTTCCAAGGAGCCTTCCATCTTCAGAGAAGAGCTGATTTCCAAAGATAATGTGGTGATAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 ENSMUST00000228895.2 |
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| CDS CAA 72 bp | TTCTCTGGCTTGGTAGATTCTATCACCACATTATCTTaGGAAATCAGCTCTTCTCTGAAGATGGAAGGCTCC | + |
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Preference number: 6 (lower is better) Translates to: FSGLVDSITTLS*EISSSLKMEGS Trigger: GGAGCCTTCCATCTTCAGAGAAGAGCTGATTTCCAAAGATAATGTGGTGATAGAATCTACCAAGCCAGAGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000023134.5 ENSMUST00000228060.2 ENSMUST00000228895.2 |
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