Pregenerated sensors for GLTP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000011884Ensembl transcript IDs: ENSMUST00000012028.14, ENSMUST00000112212.2, ENSMUST00000112214.8
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | AAACTTCCATTGTCCTTCAAGCATCCAAGACACCCCTGGGCCAGATaGGCCGGGCTTCTTTGCTGGGTGAGGTGTATGTCGCCCCTGAGC | + |
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Preference number: 1 (lower is better) Translates to: KLPLSFKHPRHPWAR*AGLLCWVRCMSPLS Trigger: GCTCAGGGGCGACATACACCTCACCCAGCAAAGAAGCCCGGCCCATCTGGCCCAGGGGTGTCTTGGATGCTTGAAGGACAATGGAAGTTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| 3UTR CCA 90 bp | CTTCCAATCAAACTTCCATTGTCCTTCAAGCATCCAAGACACCCCTaGGCCAGATGGGCCGGGCTTCTTTGCTGGGTGAGGTGTATGTCG | + |
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Preference number: 1 (lower is better) Translates to: LPIKLPLSFKHPRHP*ARWAGLLCWVRCMS Trigger: CGACATACACCTCACCCAGCAAAGAAGCCCGGCCCATCTGGCCCAGGGGTGTCTTGGATGCTTGAAGGACAATGGAAGTTTGATTGGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| 3UTR CCA 90 bp | GAAGGACGGTTAAGGCAGCAAGGCAGTGTCTTGAGTCTCCGCAGCTaGAGGGCTCTTATGAGAGGCAGTTTCTTAGGTTGGAAGAGCCAA | + |
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Preference number: 1 (lower is better) Translates to: EGRLRQQGSVLSLRS*RALMRGSFLGWKSQ Trigger: TTGGCTCTTCCAACCTAAGAAACTGCCTCTCATAAGAGCCCTCCAGCTGCGGAGACTCAAGACACTGCCTTGCTGCCTTAACCGTCCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| 3UTR-3UTR CCA 90 bp | CAAAAGACCTCTAACAAGCTAAGGCTGCCCCCTGCAGACCCAGGCTGGCCAGGCTTGCTGGTGCCCACATaGGGCTGTGTGTCCGGGCGC | + |
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Preference number: 2 (lower is better) Translates to: QKTSNKLRLPPADPGWPGLLVPT*GCVSGR Trigger: GCGCCCGGACACACAGCCCCATGTGGGCACCAGCAA...GCCTGGCCAGCCTGGGTCTGCAGGGGGCAGCCTTAGCTTGTTAGAGGTCTTTTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| 3UTR-3UTR TCA 90 bp | TGGTGGCGGCTGAGCTTGGGGAGCCGAGGAGTGAATGGAAGGTGCTTATTGCTCCCAGGCTGGGCTGGCTaGGCTGGGGGATTCCAGCTT | + |
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Preference number: 2 (lower is better) Translates to: WWRLSLGSRGVNGRCLLLPGWAG*AGGFQL Trigger: AAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTGG...GAGCAATAAGCACCTTCCATTCACTCCTCGGCTCCCCAAGCTCAGCCGCCACCA 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000012028.14 ENSMUST00000112214.8 |
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| 3UTR-3UTR TCA 90 bp | GAGGAGAGAGAGAGAGAGAACGAGAACAGGGCTGGTTATGCCAGATGGATGTGTATGTCGCCCCTGAGCTaGGTTCCTCCTGAGCTAGGT | + |
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Preference number: 2 (lower is better) Translates to: EERERENENRAGYARWMCMSPLS*VPPELG Trigger: ACCTAGCTCAGGAGGAACTCAGCTCAGGGGCGACAT...ACACATCCATCTGGCATAACCAGCCCTGTTCTCGTTCTCTCTCTCTCTCTCCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| 3UTR-3UTR GCA 90 bp | AGCTGGAGGGCTCTTATGAGAGGCAGTTTCTTAGGTTGGAAGAGCCAACCCCCAATGGAAGGTGCTTATTaGTCCATTAGAATAGGCCAA | + |
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Preference number: 2 (lower is better) Translates to: SWRALMRGSFLGWKSQPPMEGAY*SIRIGQ Trigger: TTGGCCTATTCTAATGGAGCAATAAGCACCTTCCAT...TGGGGGTTGGCTCTTCCAACCTAAGAAACTGCCTCTCATAAGAGCCCTCCAGCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| 3UTR-3UTR CAA 90 bp | CATTGTCCTTCAAGCATCCAAGACACCCCTGGGCCAGATGGGCCGGGCTTCTTTTGGTGGCGGCTGAGCTaGGGGAGCCGAGGAGTGAAT | + |
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Preference number: 3 (lower is better) Translates to: HCPSSIQDTPGPDGPGFFWWRLS*GSRGVN Trigger: ATTCACTCCTCGGCTCCCCAAGCTCAGCCGCCACCA...AAAGAAGCCCGGCCCATCTGGCCCAGGGGTGTCTTGGATGCTTGAAGGACAATG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| 3UTR TCA 72 bp | CTTCTTTGCTGGGTGAGGTGTATGTCGCCCCTGAGCTaGGTTCCTCCTGAGCTAGGTAGGGGAGGAAATGAC | + |
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Preference number: 3 (lower is better) Translates to: LLCWVRCMSPLS*VPPELGRGGND Trigger: GTCATTTCCTCCCCTACCTAGCTCAGGAGGAACTCAGCTCAGGGGCGACATACACCTCACCCAGCAAAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| 3UTR-3UTR CAA 90 bp | CTGAACTTCCAATCAAACTTCCATTGTCCTTCAAGCATCCAAGACACCCCTGGGTTCACAGTGATGGGGTaGCTGGTGCCCACATGGGGC | + |
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Preference number: 3 (lower is better) Translates to: LNFQSNFHCPSSIQDTPGFTVMG*LVPTWG Trigger: GCCCCATGTGGGCACCAGCAACCCCATCACTGTGAA...CCCAGGGGTGTCTTGGATGCTTGAAGGACAATGGAAGTTTGATTGGAAGTTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| 3UTR CCA 72 bp | TTAAGGCAGCAAGGCAGTGTCTTGAGTCTCCGCAGCTaGAGGGCTCTTATGAGAGGCAGTTTCTTAGGTTGG | + |
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Preference number: 3 (lower is better) Translates to: LRQQGSVLSLRS*RALMRGSFLGW Trigger: CCAACCTAAGAAACTGCCTCTCATAAGAGCCCTCCAGCTGCGGAGACTCAAGACACTGCCTTGCTGCCTTAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| 3UTR CCA 72 bp | AGTCACATATGGGTCACCTGTGTGCGCCTAGTCAGTTaGTTGAAAAGGCTTGCTGGTACATTTCAGGGGAAA | + |
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Preference number: 3 (lower is better) Translates to: SHIWVTCVRLVS*LKRLAGTFQGK Trigger: TTTCCCCTGAAATGTACCAGCAAGCCTTTTCAACCAACTGACTAGGCGCACACAGGTGACCCATATGTGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| CDS-3UTR TCA 90 bp | CAAAAGACCTCTAACAAGCTAAGGCTGCCCCCTGCAGACCCAGGCTGGCCAGGCCGTACAGGGCGGCCTTaGAGATCTTCTGCACCAGCC | + |
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Preference number: 4 (lower is better) Translates to: QKTSNKLRLPPADPGWPGRTGRP*RSSAPA Trigger: GGCTGGTGCAGAAGATCTTCAAGGCCGCCCTGTACG...GCCTGGCCAGCCTGGGTCTGCAGGGGGCAGCCTTAGCTTGTTAGAGGTCTTTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR TCA 90 bp | GCTGGCCAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATCGTACAGGGCGGCCTTaGAGATCTTCTGCACCAGCC | + |
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Preference number: 4 (lower is better) Translates to: AGQAGLAELGDSSLIHSDRTGRP*RSSAPA Trigger: GGCTGGTGCAGAAGATCTTCAAGGCCGCCCTGTACG...ATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTGGCCAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR CCA 90 bp | CAAAAGACCTCTAACAAGCTAAGGCTGCCCCCTGCAGACCCAGGCTGGCCAGGCCGGATGAGGTTGGGGTaGTTCTCGTCGCGTTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: QKTSNKLRLPPADPGWPGRMRLG*FSSRSP Trigger: TGGGGAACGCGACGAGAACCACCCCAACCTCATCCG...GCCTGGCCAGCCTGGGTCTGCAGGGGGCAGCCTTAGCTTGTTAGAGGTCTTTTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR GCA 90 bp | GGCCAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATGGGTCCTCTGTCACGTTCTaGCCCTTGGAGAGTGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: GQAGLAELGDSSLIHSDGSSVTF*PLESAL Trigger: CAAGGCACTCTCCAAGGGGCAGAACGTGACAGAGGA...CCCATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTGGCC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR TCA 90 bp | TCCAGCTTGATTCACAGTGATGGGGTTGCTGGTGCCCACATGGGGCTGTGTGTCCGTACAGGGCGGCCTTaGAGATCTTCTGCACCAGCC | + |
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Preference number: 4 (lower is better) Translates to: SSLIHSDGVAGAHMGLCVRTGRP*RSSAPA Trigger: GGCTGGTGCAGAAGATCTTCAAGGCCGCCCTGTACG...GACACACAGCCCCATGTGGGCACCAGCAACCCCATCACTGTGAATCAAGCTGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR GCA 90 bp | AAGACCTCTAACAAGCTAAGGCTGCCCCCTGCAGACCCAGGCTGGCCAGGCTGGGCCTTGAAGATCTTCTaGACCAGCCAGCCATGGTAC | + |
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Preference number: 4 (lower is better) Translates to: KTSNKLRLPPADPGWPGWALKIF*TSQPWY Trigger: GTACCATGGCTGGCTGGTGCAGAAGATCTTCAAGGC...CCAGCCTGGCCAGCCTGGGTCTGCAGGGGGCAGCCTTAGCTTGTTAGAGGTCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR GCA 90 bp | GCTGGCCAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATTCCTCTGTCACGTTCTaGCCCTTGGAGAGTGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: AGQAGLAELGDSSLIHSDSSVTF*PLESAL Trigger: CAAGGCACTCTCCAAGGGGCAGAACGTGACAGAGGA...ATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTGGCCAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR GCA 90 bp | GCTGGCCAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATCCATCGCAGATGCTCTaGAGGAACACCTCCAGGATG | + |
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Preference number: 4 (lower is better) Translates to: AGQAGLAELGDSSLIHSDPSQML*RNTSRM Trigger: CATCCTGGAGGTGTTCCTGCAGAGCATCTGCGATGG...ATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTGGCCAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000112214.8 |
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| CDS-3UTR CCA 90 bp | TCCAGCTTGATTCACAGTGATGGGGTTGCTGGTGCCCACATGGGGCTGTGTGTCCGGATGAGGTTGGGGTaGTTCTCGTCGCGTTCCCCA | + |
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Preference number: 4 (lower is better) Translates to: SSLIHSDGVAGAHMGLCVRMRLG*FSSRSP Trigger: TGGGGAACGCGACGAGAACCACCCCAACCTCATCCG...GACACACAGCCCCATGTGGGCACCAGCAACCCCATCACTGTGAATCAAGCTGGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR TCA 90 bp | GCTGGCCAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATCCTTGGAGAGTGCCTTaGGGAAGTCGGACTTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: AGQAGLAELGDSSLIHSDPWRVP*GSRTCK Trigger: CTTACAAGTCCGACTTCCTCAAGGCACTCTCCAAGG...ATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTGGCCAGC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR GCA 90 bp | AACTTCCATTGTCCTTCAAGCATCCAAGACACCCCTGGGCCAGATGGGCCGGGCTCCTCTGTCACGTTCTaGCCCTTGGAGAGTGCCTTG | + |
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Preference number: 4 (lower is better) Translates to: NFHCPSSIQDTPGPDGPGSSVTF*PLESAL Trigger: CAAGGCACTCTCCAAGGGGCAGAACGTGACAGAGGA...GCCCGGCCCATCTGGCCCAGGGGTGTCTTGGATGCTTGAAGGACAATGGAAGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| CDS-3UTR CCA 90 bp | CAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATGGGGTTTGCACCAGCCAGCCATaGTACTTCTTCAGGGCCATC | + |
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Preference number: 4 (lower is better) Translates to: QAGLAELGDSSLIHSDGVCTSQP*YFFRAI Trigger: GATGGCCCTGAAGAAGTACCATGGCTGGCTGGTGCA...AACCCCATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| 3UTR CAA 72 bp | GCTCCAGAAGGACGGTTAAGGCAGCAAGGCAGTGTCTaGAGTCTCCGCAGCTGGAGGGCTCTTATGAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: APEGRLRQQGSV*SLRSWRALMRG Trigger: GCCTCTCATAAGAGCCCTCCAGCTGCGGAGACTCAAGACACTGCCTTGCTGCCTTAACCGTCCTTCTGGAGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| CDS-3UTR TCA 90 bp | CAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATGGGGTTCCTTGGAGAGTGCCTTaGGGAAGTCGGACTTGTAAG | + |
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Preference number: 4 (lower is better) Translates to: QAGLAELGDSSLIHSDGVPWRVP*GSRTCK Trigger: CTTACAAGTCCGACTTCCTCAAGGCACTCTCCAAGG...AACCCCATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR GCA 90 bp | CAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATGGGGTTGCCTTGAAGATCTTCTaGACCAGCCAGCCATGGTAC | + |
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Preference number: 4 (lower is better) Translates to: QAGLAELGDSSLIHSDGVALKIF*TSQPWY Trigger: GTACCATGGCTGGCTGGTGCAGAAGATCTTCAAGGC...AACCCCATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR CCA 90 bp | CATTGTCCTTCAAGCATCCAAGACACCCCTGGGCCAGATGGGCCGGGCTTCTTTTGCACCAGCCAGCCATaGTACTTCTTCAGGGCCATC | + |
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Preference number: 4 (lower is better) Translates to: HCPSSIQDTPGPDGPGFFCTSQP*YFFRAI Trigger: GATGGCCCTGAAGAAGTACCATGGCTGGCTGGTGCA...AAAGAAGCCCGGCCCATCTGGCCCAGGGGTGTCTTGGATGCTTGAAGGACAATG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| CDS-3UTR GCA 90 bp | CAAAAGACCTCTAACAAGCTAAGGCTGCCCCCTGCAGACCCAGGCTGGCCAGGCGTTACCGCTTATGTCTaGCTTGATGGGCGTGAATAC | + |
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Preference number: 4 (lower is better) Translates to: QKTSNKLRLPPADPGWPGVTAYV*LDGREY Trigger: GTATTCACGCCCATCAAGGCAGACATAAGCGGTAAC...GCCTGGCCAGCCTGGGTCTGCAGGGGGCAGCCTTAGCTTGTTAGAGGTCTTTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| 3UTR CAA 72 bp | GTTTTAAGCACACTGGAAGGATGGTGGCGGCTGAGCTaGGGGAGCCGAGGAGTGAATGGAAGGTGCTTATTG | + |
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Preference number: 4 (lower is better) Translates to: VLSTLEGWWRLS*GSRGVNGRCLL Trigger: CAATAAGCACCTTCCATTCACTCCTCGGCTCCCCAAGCTCAGCCGCCACCATCCTTCCAGTGTGCTTAAAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000012028.14 ENSMUST00000112214.8 |
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| CDS-3UTR GCA 90 bp | TCCAGCTTGATTCACAGTGATGGGGTTGCTGGTGCCCACATGGGGCTGTGTGTCGTTACCGCTTATGTCTaGCTTGATGGGCGTGAATAC | + |
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Preference number: 4 (lower is better) Translates to: SSLIHSDGVAGAHMGLCVVTAYV*LDGREY Trigger: GTATTCACGCCCATCAAGGCAGACATAAGCGGTAAC...GACACACAGCCCCATGTGGGCACCAGCAACCCCATCACTGTGAATCAAGCTGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| 3UTR CAA 72 bp | AGTAGGGCACCCGCTGAACTTCCAATCAAACTTCCATaGTCCTTCAAGCATCCAAGACACCCCTGGGCCAGA | + |
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Preference number: 4 (lower is better) Translates to: SRAPAELPIKLP*SFKHPRHPWAR Trigger: TCTGGCCCAGGGGTGTCTTGGATGCTTGAAGGACAATGGAAGTTTGATTGGAAGTTCAGCGGGTGCCCTACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| CDS-3UTR GCA 90 bp | GAGGAGAGAGAGAGAGAGAACGAGAACAGGGCTGGTTATGCCAGATGGATGTGTGTTACCGCTTATGTCTaGCTTGATGGGCGTGAATAC | + |
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Preference number: 4 (lower is better) Translates to: EERERENENRAGYARWMCVTAYV*LDGREY Trigger: GTATTCACGCCCATCAAGGCAGACATAAGCGGTAAC...ACACATCCATCTGGCATAACCAGCCCTGTTCTCGTTCTCTCTCTCTCTCTCCTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| 3UTR CAA 72 bp | CAGTCACATATGGGTCACCTGTGTGCGCCTAGTCAGTaGGTTGAAAAGGCTTGCTGGTACATTTCAGGGGAA | + |
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Preference number: 4 (lower is better) Translates to: QSHMGHLCAPSQ*VEKACWYISGE Trigger: TTCCCCTGAAATGTACCAGCAAGCCTTTTCAACCAACTGACTAGGCGCACACAGGTGACCCATATGTGACTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| CDS-3UTR CAA 90 bp | GGCCAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATGGGGTCACGTTCTGCCCCTaGGAGAGTGCCTTGAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: GQAGLAELGDSSLIHSDGVTFCP*ESALRK Trigger: CTTCCTCAAGGCACTCTCCAAGGGGCAGAACGTGAC...CCCATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR CAA 90 bp | CAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATGGGGTTGCGTACAGGGCGGCCTaGAAGATCTTCTGCACCAGC | + |
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Preference number: 5 (lower is better) Translates to: QAGLAELGDSSLIHSDGVAYRAA*KIFCTS Trigger: GCTGGTGCAGAAGATCTTCAAGGCCGCCCTGTACGC...AACCCCATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR CAA 90 bp | GCTGGCCAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATGTCACGTTCTGCCCCTaGGAGAGTGCCTTGAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: AGQAGLAELGDSSLIHSDVTFCP*ESALRK Trigger: CTTCCTCAAGGCACTCTCCAAGGGGCAGAACGTGAC...ATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTGGCCAGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR CAA 90 bp | AAGACCTCTAACAAGCTAAGGCTGCCCCCTGCAGACCCAGGCTGGCCAGGCTGGTGCAGGGTCTTGAACTaGGCTGGGTCGGTGTCATAT | + |
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Preference number: 5 (lower is better) Translates to: KTSNKLRLPPADPGWPGWCRVLN*AGSVSY Trigger: ATATGACACCGACCCAGCCAAGTTCAAGACCCTGCA...CCAGCCTGGCCAGCCTGGGTCTGCAGGGGGCAGCCTTAGCTTGTTAGAGGTCTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR CAA 90 bp | GGCCAGGCTGGGCTGGCTGAGCTGGGGGATTCCAGCTTGATTCACAGTGATGGGTGCAGGGTCTTGAACTaGGCTGGGTCGGTGTCATAT | + |
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Preference number: 5 (lower is better) Translates to: GQAGLAELGDSSLIHSDGCRVLN*AGSVSY Trigger: ATATGACACCGACCCAGCCAAGTTCAAGACCCTGCA...CCCATCACTGTGAATCAAGCTGGAATCCCCCAGCTCAGCCAGCCCAGCCTGGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS-3UTR CAA 90 bp | GAGAGAGAGGAGAGAGAGAGAGAGAACGAGAACAGGGCTGGTTATGCCAGATGGGCGTACAGGGCGGCCTaGAAGATCTTCTGCACCAGC | + |
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Preference number: 5 (lower is better) Translates to: EREERERENENRAGYARWAYRAA*KIFCTS Trigger: GCTGGTGCAGAAGATCTTCAAGGCCGCCCTGTACGC...CCATCTGGCATAACCAGCCCTGTTCTCGTTCTCTCTCTCTCTCTCCTCTCTCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| CDS-3UTR CAA 90 bp | AGCTGGAGGGCTCTTATGAGAGGCAGTTTCTTAGGTTGGAAGAGCCAACCCCCATGCAGGGTCTTGAACTaGGCTGGGTCGGTGTCATAT | + |
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Preference number: 5 (lower is better) Translates to: SWRALMRGSFLGWKSQPPCRVLN*AGSVSY Trigger: ATATGACACCGACCCAGCCAAGTTCAAGACCCTGCA...TGGGGGTTGGCTCTTCCAACCTAAGAAACTGCCTCTCATAAGAGCCCTCCAGCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| CDS-3UTR CAA 90 bp | CTGAACTTCCAATCAAACTTCCATTGTCCTTCAAGCATCCAAGACACCCCTGGGGTCACGTTCTGCCCCTaGGAGAGTGCCTTGAGGAAG | + |
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Preference number: 5 (lower is better) Translates to: LNFQSNFHCPSSIQDTPGVTFCP*ESALRK Trigger: CTTCCTCAAGGCACTCTCCAAGGGGCAGAACGTGAC...CCCAGGGGTGTCTTGGATGCTTGAAGGACAATGGAAGTTTGATTGGAAGTTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000012028.14 |
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| CDS GCA 72 bp | GGAGAGTGCCTTGAGGAAGTCGGACTTGTAAGGTGCTaGGTACAGGGCGGCCTTGAAGATCTTCTGCACCAG | + |
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Preference number: 6 (lower is better) Translates to: GECLEEVGLVRC*VQGGLEDLLHQ Trigger: CTGGTGCAGAAGATCTTCAAGGCCGCCCTGTACGCAGCACCTTACAAGTCCGACTTCCTCAAGGCACTCTCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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| CDS GCA 72 bp | CTTGGAGAGTGCCTTGAGGAAGTCGGACTTGTAAGGTaGTGCGTACAGGGCGGCCTTGAAGATCTTCTGCAC | + |
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Preference number: 6 (lower is better) Translates to: LGECLEEVGLVR*CVQGGLEDLLH Trigger: GTGCAGAAGATCTTCAAGGCCGCCCTGTACGCAGCACCTTACAAGTCCGACTTCCTCAAGGCACTCTCCAAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000012028.14 ENSMUST00000112212.2 ENSMUST00000112214.8 |
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