RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GLS2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000044005

Ensembl transcript IDs: ENSMUST00000044776.13, ENSMUST00000123291.2, ENSMUST00000132441.2, ENSMUST00000134104.8, ENSMUST00000143827.8, ENSMUST00000159440.8

Found 321 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTGCCCATCCACAGTGCACAGGGAGACGCCCCAAAGGTCTGGGTTTaGTTTGGCCAGGTGCGGGATGTAGGCTGCCACTTTGCCTCCAGT +
Preference number: 1 (lower is better)
Translates to: LPIHSAQGDAPKVWV*FGQVRDVGCHFASS
Trigger: ACTGGAGGCAAAGTGGCAGCCTACATCCCGCACCTGGCCAAATCAAACCCAGACCTTTGGGGCGTCTCCCTGTGCACTGTGGATGGGCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR TCA 90 bp AGGGCAGATGCCGCCATTGGCCAGAGTGGCCGCCATGACACTGCCTaGCTCACAGGTAACCTCCACAGAGCACAGCTGGAAATAGAGATC +
Preference number: 1 (lower is better)
Translates to: RADAAIGQSGRHDTA*LTGNLHRAQLEIEI
Trigger: GATCTCTATTTCCAGCTGTGCTCTGTGGAGGTTACCTGTGAGTCAGGCAGTGTCATGGCGGCCACTCTGGCCAATGGCGGCATCTGCCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR GCA 90 bp GCTTTTTCTGAAGCAGGGACTGCCCCTGGGCCTGTGCTCATACCATaGTCTCTAGATTCTCTTTGGACAGGGTCTCAGCTGCCGCCTCAG +
Preference number: 1 (lower is better)
Translates to: AFSEAGTAPGPVLIP*SLDSLWTGSQLPPQ
Trigger: CTGAGGCGGCAGCTGAGACCCTGTCCAAAGAGAATCTAGAGAGCATGGTATGAGCACAGGCCCAGGGGCAGTCCCTGCTTCAGAAAAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CCA 90 bp ACTGCCCCTGGGCCTGTGCTCATACCATGCTCTCTAGATTCTCTTTaGACAGGGTCTCAGCTGCCGCCTCAGCTTGAGTCTCAGAGAGCA +
Preference number: 1 (lower is better)
Translates to: TAPGPVLIPCSLDSL*TGSQLPPQLESQRA
Trigger: TGCTCTCTGAGACTCAAGCTGAGGCGGCAGCTGAGACCCTGTCCAAAGAGAATCTAGAGAGCATGGTATGAGCACAGGCCCAGGGGCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR TCA 90 bp TGTTCCCCAGCTTGTCTAACGGCGGCGACAGACACATCATGCCCATaGCATTGGGTACAACCAGGAGGATGGCTCCTGACACAGCTGACT +
Preference number: 1 (lower is better)
Translates to: CSPACLTAATDTSCP*HWVQPGGWLLTQLT
Trigger: AGTCAGCTGTGTCAGGAGCCATCCTCCTGGTTGTACCCAATGTCATGGGCATGATGTGTCTGTCGCCGCCGTTAGACAAGCTGGGGAACA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR GCA 90 bp GGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTaGCGTAGTATTTTTGGTGGCTGTGGGTTAAATGTGTGGCCAGCT +
Preference number: 1 (lower is better)
Translates to: GLCHQMAVSIPKEAA*RSIFGGCGLNVWPA
Trigger: AGCTGGCCACACATTTAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CCA 90 bp AAGTTAAAGAGAGACACCAACTTCTGGCAGAAGTTGATGCCCCTTTaGCTGTTCCCCAGCTTGTCTAACGGCGGCGACAGACACATCATG +
Preference number: 1 (lower is better)
Translates to: KLKRDTNFWQKLMPL*LFPSLSNGGDRHIM
Trigger: CATGATGTGTCTGTCGCCGCCGTTAGACAAGCTGGGGAACAGCCAAAGGGGCATCAACTTCTGCCAGAAGTTGGTGTCTCTCTTTAACTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CCA 90 bp TTGCCTCCAGTGGGCTCTTTGGCATCCTCAAATATGCGATCCACATaGCCCGTGAACTCCTCAAAGTCAGGAATGACAAACTTCTTTCGG +
Preference number: 1 (lower is better)
Translates to: LPPVGSLASSNMRST*PVNSSKSGMTNFFR
Trigger: CCGAAAGAAGTTTGTCATTCCTGACTTTGAGGAGTTCACGGGCCATGTGGATCGCATATTTGAGGATGCCAAAGAGCCCACTGGAGGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR CCA 90 bp AAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTaGCTAAGATGGACAGATCTCCGCAGACTTCTAAAGCCACGTGGT +
Preference number: 1 (lower is better)
Translates to: KYSVYKIAVSSSSVS*LRWTDLRRLLKPRG
Trigger: ACCACGTGGCTTTAGAAGTCTGCGGAGATCTGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CAA 90 bp TCGGCGCTCAGCACGCTCTCCCCTGTGATAGGGCAGATGCCGCCATaGGCCAGAGTGGCCGCCATGACACTGCCTGACTCACAGGTAACC +
Preference number: 2 (lower is better)
Translates to: SALSTLSPVIGQMPP*ARVAAMTLPDSQVT
Trigger: GGTTACCTGTGAGTCAGGCAGTGTCATGGCGGCCACTCTGGCCAATGGCGGCATCTGCCCTATCACAGGGGAGAGCGTGCTGAGCGCCGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CAA 90 bp GCTGCCCATCCACAGTGCACAGGGAGACGCCCCAAAGGTCTGGGTTaGATTTGGCCAGGTGCGGGATGTAGGCTGCCACTTTGCCTCCAG +
Preference number: 2 (lower is better)
Translates to: AAHPQCTGRRPKGLG*IWPGAGCRLPLCLQ
Trigger: CTGGAGGCAAAGTGGCAGCCTACATCCCGCACCTGGCCAAATCAAACCCAGACCTTTGGGGCGTCTCCCTGTGCACTGTGGATGGGCAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp CTGACACAGCTGACTTGGCTGGCAGGCCCACATGGAAGGCAAACTGGCCCGAGACGCCATGACACTGCCTaGCTCACAGGTAACCTCCAC +
Preference number: 2 (lower is better)
Translates to: LTQLTWLAGPHGRQTGPRRHDTA*LTGNLH
Trigger: GTGGAGGTTACCTGTGAGTCAGGCAGTGTCATGGCG...TCTCGGGCCAGTTTGCCTTCCATGTGGGCCTGCCAGCCAAGTCAGCTGTGTCAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp GAACCTCTCCTCCTTCCCTCCGTGGGTCTAACTTCCGAGCGCAGTGCCGCAGGTCCAAAGGTCTGGGTTTaGTTTGGCCAGGTGCGGGAT +
Preference number: 2 (lower is better)
Translates to: EPLLLPSVGLTSERSAAGPKVWV*FGQVRD
Trigger: ATCCCGCACCTGGCCAAATCAAACCCAGACCTTTGG...ACCTGCGGCACTGCGCTCGGAAGTTAGACCCACGGAGGGAAGGAGGAGAGGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp GAACCTCTCCTCCTTCCCTCCGTGGGTCTAACTTCCGAGCGCAGTGCCGCAGGTGGAGCACAATGTTGCTaGTCACACACCTGGATCCCA +
Preference number: 2 (lower is better)
Translates to: EPLLLPSVGLTSERSAAGGAQCC*SHTWIP
Trigger: TGGGATCCAGGTGTGTGAGCAGCAACATTGTGCTCC...ACCTGCGGCACTGCGCTCGGAAGTTAGACCCACGGAGGGAAGGAGGAGAGGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp GAACCTCTCCTCCTTCCCTCCGTGGGTCTAACTTCCGAGCGCAGTGCCGCAGGTTGTGCACGTAGTCAGTaGCTAAGGTGCTCACGGAGA +
Preference number: 2 (lower is better)
Translates to: EPLLLPSVGLTSERSAAGCARSQ*LRCSRR
Trigger: TCTCCGTGAGCACCTTAGGCACTGACTACGTGCACA...ACCTGCGGCACTGCGCTCGGAAGTTAGACCCACGGAGGGAAGGAGGAGAGGTTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp AACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCGGACAGGGTCTCAGCTaGCGCCTCAGCTTGAGTCTC +
Preference number: 2 (lower is better)
Translates to: NTGLCHQMAVSIPKEAACGQGLS*RLSLSL
Trigger: GAGACTCAAGCTGAGGCGGCAGCTGAGACCCTGTCC...GCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp GGCGACAGACACATCATGCCCATGACATTGGGTACAACCAGGAGGATGGCTCCTGCTGCCCATCCACAGTaGACAGGGAGACGCCCCAAA +
Preference number: 2 (lower is better)
Translates to: GDRHIMPMTLGTTRRMAPAAHPQ*TGRRPK
Trigger: TTTGGGGCGTCTCCCTGTGCACTGTGGATGGGCAGC...AGGAGCCATCCTCCTGGTTGTACCCAATGTCATGGGCATGATGTGTCTGTCGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp AACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCCACCTCCAGGTGGTTaGACTGCACAGCATCGTCCA +
Preference number: 2 (lower is better)
Translates to: NTGLCHQMAVSIPKEAACPPPGG*TAQHRP
Trigger: TGGACGATGCTGTGCAGTTCAACCACCTGGAGGTGG...GCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp ACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCGCCTGTGTCACCAAATaGCTGTGTCGATCCCCAAGG +
Preference number: 2 (lower is better)
Translates to: TLACVTKWLCRSPRKQLAACVTK*LCRSPR
Trigger: CCTTGGGGATCGACACAGCCATTTGGTGACACAGGC...GGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp GAACCTCTCCTCCTTCCCTCCGTGGGTCTAACTTCCGAGCGCAGTGCCGCAGGTGTCTCCTTCTCTGACTaGAATGTGGCATTGCTGAAC +
Preference number: 2 (lower is better)
Translates to: EPLLLPSVGLTSERSAAGVSFSD*NVALLN
Trigger: GTTCAGCAATGCCACATTCCAGTCAGAGAAGGAGAC...ACCTGCGGCACTGCGCTCGGAAGTTAGACCCACGGAGGGAAGGAGGAGAGGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp GTACAACCAGGAGGATGGCTCCTGACACAGCTGACTTGGCTGGCAGGCCCACATGTACAACCAGGAGGATaGCTCCTGACACAGCTGACT +
Preference number: 2 (lower is better)
Translates to: VQPGGWLLTQLTWLAGPHVQPGG*LLTQLT
Trigger: AGTCAGCTGTGTCAGGAGCCATCCTCCTGGTTGTAC...ATGTGGGCCTGCCAGCCAAGTCAGCTGTGTCAGGAGCCATCCTCCTGGTTGTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp GGACAGGGTCTCAGCTGCCGCCTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCTTGACCACCTCCAGGTaGTTGAACTGCACAGCATCG +
Preference number: 2 (lower is better)
Translates to: GQGLSCRLSLSLREQVGVLTTSR*LNCTAS
Trigger: CGATGCTGTGCAGTTCAACCACCTGGAGGTGGTCAA...GACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCGGCAGCTGAGACCCTGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp ACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCCAATGGCACCAGCATTaGCCATGGGGTTATGGGGAA +
Preference number: 2 (lower is better)
Translates to: TLACVTKWLCRSPRKQLAQWHQH*PWGYGE
Trigger: TTCCCCATAACCCCATGGTCAATGCTGGTGCCATTG...GGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp CAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGAGCTCATGCTTTTTCTaGAGCAGGGACTGCCCCTGG +
Preference number: 2 (lower is better)
Translates to: QKTLACVTKWLCRSPRKQSSCFF*SRDCPW
Trigger: CCAGGGGCAGTCCCTGCTTCAGAAAAAGCATGAGCT...CTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTAGACCACTGGGTTCCTTaGCCACAAACTTGTGCACGT +
Preference number: 2 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVDHWVP*PQTCAR
Trigger: ACGTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTC...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTAGTACAACCAGGAGGATaGCTCCTGACACAGCTGACT +
Preference number: 2 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVVQPGG*LLTQLT
Trigger: AGTCAGCTGTGTCAGGAGCCATCCTCCTGGTTGTAC...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp GTGTCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTAAGCTCATGCTTTTTCTaGAGCAGGGACTGCCCCTGG +
Preference number: 2 (lower is better)
Translates to: VSIPKEAACRSIFGGCGLSSCFF*SRDCPW
Trigger: CCAGGGGCAGTCCCTGCTTCAGAAAAAGCATGAGCT...TAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 5 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp CCCAGCTTGTCTAACGGCGGCGACAGACACATCATGCCCATGACATTGGGTACAAGCACTTCTTCTCCTTaGGGTAATAGCCGATGGCGT +
Preference number: 2 (lower is better)
Translates to: PSLSNGGDRHIMPMTLGTSTSSP*GNSRWR
Trigger: ACGCCATCGGCTATTACCTCAAGGAGAAGAAGTGCT...TGTACCCAATGTCATGGGCATGATGTGTCTGTCGCCGCCGTTAGACAAGCTGGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp ATGCCCATGACATTGGGTACAACCAGGAGGATGGCTCCTGACACAGCTGACTTGGACCACTGGGTTCCTTaGCCACAAACTTGTGCACGT +
Preference number: 2 (lower is better)
Translates to: MPMTLGTTRRMAPDTADLDHWVP*PQTCAR
Trigger: ACGTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTC...CAAGTCAGCTGTGTCAGGAGCCATCCTCCTGGTTGTACCCAATGTCATGGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp GTACAACCAGGAGGATGGCTCCTGACACAGCTGACTTGGCTGGCAGGCCCACATTATTTTTGGTGGCTGTaGGTTAAATGTGTGGCCAGC +
Preference number: 2 (lower is better)
Translates to: VQPGGWLLTQLTWLAGPHYFWWL*VKCVAS
Trigger: GCTGGCCACACATTTAACCCACAGCCACCAAAAATA...ATGTGGGCCTGCCAGCCAAGTCAGCTGTGTCAGGAGCCATCCTCCTGGTTGTAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp CAGCAAATAGCAGGTTCACCACGGTCTTGTTCCGAACCTCTCCTCCTTCCCTCCAAGTTGATGCCCCTTTaGCTGTTCCCCAGCTTGTCT +
Preference number: 2 (lower is better)
Translates to: QQIAGSPRSCSEPLLLPSKLMPL*LFPSLS
Trigger: AGACAAGCTGGGGAACAGCCAAAGGGGCATCAACTT...GGAGGGAAGGAGGAGAGGTTCGGAACAAGACCGTGGTGAACCTGCTATTTGCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp GCTCCATATCCATGGCCGACAATGCAAACCTTCGAAGGGCCGAGACATCTCCACAAGTTGATGCCCCTTTaGCTGTTCCCCAGCTTGTCT +
Preference number: 2 (lower is better)
Translates to: APYPWPTMQTFEGPRHLHKLMPL*LFPSLS
Trigger: AGACAAGCTGGGGAACAGCCAAAGGGGCATCAACTT...GTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATTGTCGGCCATGGATATGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CAA 90 bp GAGACATCTCCACTATATGCAGCAAATAGCAGGTTCACCACGGTCTaGTTCCGAACCTCTCCTCCTTCCCTCCGTGGGTCTAACTTCCGA +
Preference number: 2 (lower is better)
Translates to: ETSPLYAANSRFTTV*FRTSPPSLRGSNFR
Trigger: TCGGAAGTTAGACCCACGGAGGGAAGGAGGAGAGGTTCGGAACAAGACCGTGGTGAACCTGCTATTTGCTGCATATAGTGGAGATGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp GCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGCACTGAACTGATGAGCTCATGCTTTTTCTaGAGCAGGGACTGCCCCTGG +
Preference number: 2 (lower is better)
Translates to: ALLRYPLRLFSVLCTELMSSCFF*SRDCPW
Trigger: CCAGGGGCAGTCCCTGCTTCAGAAAAAGCATGAGCT...CATCAGTTCAGTGCACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp TTCTCTGACTGGAATGTGGCATTGCTGAACCCCATGAATTCGTTCCCAGCCATCAGCTCATGCTTTTTCTaGAGCAGGGACTGCCCCTGG +
Preference number: 2 (lower is better)
Translates to: FSDWNVALLNPMNSFPAISSCFF*SRDCPW
Trigger: CCAGGGGCAGTCCCTGCTTCAGAAAAAGCATGAGCT...GATGGCTGGGAACGAATTCATGGGGTTCAGCAATGCCACATTCCAGTCAGAGAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTATTCTTTCGGAATGCCTaGGTCAGGAGCACAATGTTG +
Preference number: 2 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVFFRNA*VRSTML
Trigger: CAACATTGTGCTCCTGACTCAGGCATTCCGAAAGAA...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp ACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCATTCTCAGAAAACACTaGCCTGTGTCACCAAATGGC +
Preference number: 2 (lower is better)
Translates to: TLACVTKWLCRSPRKQLAILRKH*PVSPNG
Trigger: GCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAAT...GGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp ACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCACTTCTAAAGCCACGTaGTTTGGCTCTCACCCATTT +
Preference number: 2 (lower is better)
Translates to: TLACVTKWLCRSPRKQLATSKAT*FGSHPF
Trigger: AAATGGGTGAGAGCCAAACCACGTGGCTTTAGAAGT...GGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp CAGCTGCAGCGACATGTAGGGCTGTGCGGGAATCATAGTCCTTCTGCTCCATATTATAGCGCAGACCACTaGGTTCCTTGCCCACAAACT +
Preference number: 2 (lower is better)
Translates to: QLQRHVGLCGNHSPSAPYYSADH*VPCPQT
Trigger: AGTTTGTGGGCAAGGAACCCAGTGGTCTGCGCTATA...ATATGGAGCAGAAGGACTATGATTCCCGCACAGCCCTACATGTCGCTGCAGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp ATAGCAGGTTCACCACGGTCTTGTTCCGAACCTCTCCTCCTTCCCTCCGTGGGTTTGACCATGGGGTTATaGGGAATTCCTTCCTCATTG +
Preference number: 2 (lower is better)
Translates to: IAGSPRSCSEPLLLPSVGLTMGL*GIPSSL
Trigger: CAATGAGGAAGGAATTCCCCATAACCCCATGGTCAA...ACCCACGGAGGGAAGGAGGAGAGGTTCGGAACAAGACCGTGGTGAACCTGCTAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp AAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAAGATGGACAGATCTCCGCTTGACCACCTCCAGGTaGTTGAACTGCACAGCATCG +
Preference number: 2 (lower is better)
Translates to: KIAVSSSSVSWLRWTDLRLTTSR*LNCTAS
Trigger: CGATGCTGTGCAGTTCAACCACCTGGAGGTGGTCAA...GCGGAGATCTGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CAA 90 bp CGCCTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCATGGTAATCTaGAAGCAGTTTGACCACCTCCAGGTGGTTGAACTGCACAGCATC +
Preference number: 2 (lower is better)
Translates to: RLSLSLREQVGVMVI*KQFDHLQVVELHSI
Trigger: GATGCTGTGCAGTTCAACCACCTGGAGGTGGTCAAACTGCTTCAAGATTACCATGACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp AAGCAGTTTGACCACCTCCAGGTGGTTGAACTGCACAGCATCGTCCAGGGGAATTGCTCAGGTATCCATTaGGGCTTTTCTCTGTGCTGT +
Preference number: 2 (lower is better)
Translates to: KQFDHLQVVELHSIVQGNCSGIH*GFSLCC
Trigger: ACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCA...ATTCCCCTGGACGATGCTGTGCAGTTCAACCACCTGGAGGTGGTCAAACTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp CTGCCGCCTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCATGGTAATCTTGAACAATGGCACCAGCATTaGCCATGGGGTTATGGGGAA +
Preference number: 2 (lower is better)
Translates to: LPPQLESQRASRSHGNLEQWHQH*PWGYGE
Trigger: TTCCCCATAACCCCATGGTCAATGCTGGTGCCATTG...TTCAAGATTACCATGACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCGGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp GTGTCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTAAGCACTTCTTCTCCTTaGGGTAATAGCCGATGGCGT +
Preference number: 2 (lower is better)
Translates to: VSIPKEAACRSIFGGCGLSTSSP*GNSRWR
Trigger: ACGCCATCGGCTATTACCTCAAGGAGAAGAAGTGCT...TAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp AGCTGCCGCCTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCATGGTAATCTTGTACATGCCACAGGAATaGATGAGGCTGAGGGTGTTG +
Preference number: 2 (lower is better)
Translates to: SCRLSLSLREQVGVMVILYMPQE*MRLRVL
Trigger: CAACACCCTCAGCCTCATGCATTCCTGTGGCATGTA...CAAGATTACCATGACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCGGCAGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp AGATCAAGGGCAGCCATCATGTCCACACCCTTAGGGAAGCACTTCTTCTCCTTGTCAGGAGCACAATGTTaGTGCTCACACACCTGGATC +
Preference number: 2 (lower is better)
Translates to: RSRAAIMSTPLGKHFFSLSGAQC*CSHTWI
Trigger: GATCCAGGTGTGTGAGCAGCAACATTGTGCTCCTGA...CAAGGAGAAGAAGTGCTTCCCTAAGGGTGTGGACATGATGGCTGCCCTTGATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp ACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTACCCACAGAGTGCCGCTaGCCATCCACAGTGCACAGG +
Preference number: 2 (lower is better)
Translates to: TKYSVYKIAVSSSSVSWLPTECR*PSTVHR
Trigger: CCTGTGCACTGTGGATGGGCAGCGGCACTCTGTGGG...TAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp AATGCAAACCTTCGAAGGGCCGAGACATCTCCACTATATGCAGCAAATAGCAGGGGCTTGACACAGGACTaGAGGCAGAAGGGGATCTTC +
Preference number: 2 (lower is better)
Translates to: NANLRRAETSPLYAANSRGLTQD*RQKGIF
Trigger: GAAGATCCCCTTCTGCCTGCAGTCCTGTGTCAAGCC...CCTGCTATTTGCTGCATATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTAACTTCTAAAGCCACGTaGTTTGGCTCTCACCCATTT +
Preference number: 2 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVTSKAT*FGSHPF
Trigger: AAATGGGTGAGAGCCAAACCACGTGGCTTTAGAAGT...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp AAGCAGTTTGACCACCTCCAGGTGGTTGAACTGCACAGCATCGTCCAGGGGAATGTCTCCTTCTCTGACTaGAATGTGGCATTGCTGAAC +
Preference number: 2 (lower is better)
Translates to: KQFDHLQVVELHSIVQGNVSFSD*NVALLN
Trigger: GTTCAGCAATGCCACATTCCAGTCAGAGAAGGAGAC...ATTCCCCTGGACGATGCTGTGCAGTTCAACCACCTGGAGGTGGTCAAACTGCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp CATATCCATGGCCGACAATGCAAACCTTCGAAGGGCCGAGACATCTCCACTATACCACTTTGCCTCCAGTaGGCTCTTTGGCATCCTCAA +
Preference number: 2 (lower is better)
Translates to: HIHGRQCKPSKGRDISTIPLCLQ*ALWHPQ
Trigger: TTGAGGATGCCAAAGAGCCCACTGGAGGCAAAGTGG...TATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATTGTCGGCCATGGATATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp CAAGTAGGAGTCATGGTAATCTTGAAGCAGTTTGACCACCTCCAGGTGGTTGAAAGCTCATGCTTTTTCTaGAGCAGGGACTGCCCCTGG +
Preference number: 2 (lower is better)
Translates to: QVGVMVILKQFDHLQVVESSCFF*SRDCPW
Trigger: CCAGGGGCAGTCCCTGCTTCAGAAAAAGCATGAGCT...TTCAACCACCTGGAGGTGGTCAAACTGCTTCAAGATTACCATGACTCCTACTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp CATATCCATGGCCGACAATGCAAACCTTCGAAGGGCCGAGACATCTCCACTATAAGCACTTCTTCTCCTTaGGGTAATAGCCGATGGCGT +
Preference number: 2 (lower is better)
Translates to: HIHGRQCKPSKGRDISTISTSSP*GNSRWR
Trigger: ACGCCATCGGCTATTACCTCAAGGAGAAGAAGTGCT...TATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATTGTCGGCCATGGATATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp CTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCATGGTAATCTTGAAGCAGTTTCGCCATGACACTGCCTaGCTCACAGGTAACCTCCAC +
Preference number: 2 (lower is better)
Translates to: LSLSLREQVGVMVILKQFRHDTA*LTGNLH
Trigger: GTGGAGGTTACCTGTGAGTCAGGCAGTGTCATGGCG...AAACTGCTTCAAGATTACCATGACTCCTACTTGCTCTCTGAGACTCAAGCTGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp GTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCGACCACTGGGTTCCTTaGCCACAAACTTGTGCACGT +
Preference number: 2 (lower is better)
Translates to: VLILRKHWPVSPNGCVDPDHWVP*PQTCAR
Trigger: ACGTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTC...GGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp CCACAGAGCACAGCTGGAAATAGAGATCAAGGGCAGCCATCATGTCCACACCCTTATTTTTGGTGGCTGTaGGTTAAATGTGTGGCCAGC +
Preference number: 2 (lower is better)
Translates to: PQSTAGNRDQGQPSCPHPYFWWL*VKCVAS
Trigger: GCTGGCCACACATTTAACCCACAGCCACCAAAAATA...AGGGTGTGGACATGATGGCTGCCCTTGATCTCTATTTCCAGCTGTGCTCTGTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp GCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGCACTGAACTGATGTATAGCGCAGACCACTaGGTTCCTTGCCCACAAACT +
Preference number: 2 (lower is better)
Translates to: ALLRYPLRLFSVLCTELMYSADH*VPCPQT
Trigger: AGTTTGTGGGCAAGGAACCCAGTGGTCTGCGCTATA...CATCAGTTCAGTGCACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp CCACAGAGCACAGCTGGAAATAGAGATCAAGGGCAGCCATCATGTCCACACCCTTTGACCATGGGGTTATaGGGAATTCCTTCCTCATTG +
Preference number: 2 (lower is better)
Translates to: PQSTAGNRDQGQPSCPHPLTMGL*GIPSSL
Trigger: CAATGAGGAAGGAATTCCCCATAACCCCATGGTCAA...AGGGTGTGGACATGATGGCTGCCCTTGATCTCTATTTCCAGCTGTGCTCTGTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp GTGTCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTATCTGCTCCATATCCATaGCCGACAATGCAAACCTTC +
Preference number: 2 (lower is better)
Translates to: VSIPKEAACRSIFGGCGLSAPYP*PTMQTF
Trigger: GAAGGTTTGCATTGTCGGCCATGGATATGGAGCAGA...TAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp CATATCCATGGCCGACAATGCAAACCTTCGAAGGGCCGAGACATCTCCACTATAGTCTCCTTCTCTGACTaGAATGTGGCATTGCTGAAC +
Preference number: 2 (lower is better)
Translates to: HIHGRQCKPSKGRDISTIVSFSD*NVALLN
Trigger: GTTCAGCAATGCCACATTCCAGTCAGAGAAGGAGAC...TATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATTGTCGGCCATGGATATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp AACCTTCGAAGGGCCGAGACATCTCCACTATATGCAGCAAATAGCAGGTTCACCAGAGACACCAACTTCTaGCAGAAGTTGATGCCCCTT +
Preference number: 2 (lower is better)
Translates to: NLRRAETSPLYAANSRFTRDTNF*QKLMPL
Trigger: AAGGGGCATCAACTTCTGCCAGAAGTTGGTGTCTCT...GGTGAACCTGCTATTTGCTGCATATAGTGGAGATGTCTCGGCCCTTCGAAGGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp ACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTAATATGCGATCCACATaGCCCGTGAACTCCTCAAAG +
Preference number: 2 (lower is better)
Translates to: TLELYLEVSVASSAQVSINMRST*PVNSSK
Trigger: CTTTGAGGAGTTCACGGGCCATGTGGATCGCATATT...AATGGATACCTGAGCAGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp TCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGAATTCCTTCCTCATTaGGGGAGAGTTTGTTATAGC +
Preference number: 2 (lower is better)
Translates to: SENTGLCHQMAVSIPKEAEFLPH*GRVCYS
Trigger: GCTATAACAAACTCTCCCTCAATGAGGAAGGAATTC...TGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp CTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCATGGTAATCTTGAAGCAGTTTGATCCACATGGCCCGTaGACTCCTCAAAGTCAGGAA +
Preference number: 2 (lower is better)
Translates to: LSLSLREQVGVMVILKQFDPHGP*TPQSQE
Trigger: TTCCTGACTTTGAGGAGTTCACGGGCCATGTGGATC...AAACTGCTTCAAGATTACCATGACTCCTACTTGCTCTCTGAGACTCAAGCTGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp TCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAAGATGGACATACATGCCACAGGAATaGATGAGGCTGAGGGTGTTG +
Preference number: 2 (lower is better)
Translates to: SVYKIAVSSSSVSWLRWTYMPQE*MRLRVL
Trigger: CAACACCCTCAGCCTCATGCATTCCTGTGGCATGTA...TGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR GCA 90 bp TCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAAAACTTCTTTCGGAATaGCTGAGTCAGGAGCACAAT +
Preference number: 2 (lower is better)
Translates to: SENTGLCHQMAVSIPKEAKLLSE*LSQEHN
Trigger: ATTGTGCTCCTGACTCAGGCATTCCGAAAGAAGTTT...TGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp CTGCCGCCTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCATGGTAATCTTGAATATTTTTGGTGGCTGTaGGTTAAATGTGTGGCCAGC +
Preference number: 2 (lower is better)
Translates to: LPPQLESQRASRSHGNLEYFWWL*VKCVAS
Trigger: GCTGGCCACACATTTAACCCACAGCCACCAAAAATA...TTCAAGATTACCATGACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCGGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp TTCTCTGACTGGAATGTGGCATTGCTGAACCCCATGAATTCGTTCCCAGCCATCATTCTCAGAAAACACTaGCCTGTGTCACCAAATGGC +
Preference number: 2 (lower is better)
Translates to: FSDWNVALLNPMNSFPAIILRKH*PVSPNG
Trigger: GCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAAT...GATGGCTGGGAACGAATTCATGGGGTTCAGCAATGCCACATTCCAGTCAGAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp GTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGATTCTCAGAAAACACTaGCCTGTGTCACCAAATGGC +
Preference number: 2 (lower is better)
Translates to: VSVASSAQVSIEAFLCAVILRKH*PVSPNG
Trigger: GCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAAT...CACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGCTAGCTACAGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp AACCTTCGAAGGGCCGAGACATCTCCACTATATGCAGCAAATAGCAGGTTCACCATTCTCAGAAAACACTaGCCTGTGTCACCAAATGGC +
Preference number: 2 (lower is better)
Translates to: NLRRAETSPLYAANSRFTILRKH*PVSPNG
Trigger: GCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAAT...GGTGAACCTGCTATTTGCTGCATATAGTGGAGATGTCTCGGCCCTTCGAAGGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp GGCGACAGACACATCATGCCCATGACATTGGGTACAACCAGGAGGATGGCTCCTAAGGAAGTTGCTTGTTaGCATGATGATTTCTTCAGA +
Preference number: 2 (lower is better)
Translates to: GDRHIMPMTLGTTRRMAPKEVAC*HDDFFR
Trigger: TCTGAAGAAATCATCATGCCAACAAGCAACTTCCTT...AGGAGCCATCCTCCTGGTTGTACCCAATGTCATGGGCATGATGTGTCTGTCGCC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp TCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAAGATGGACAAAGTTGATGCCCCTTTaGCTGTTCCCCAGCTTGTCT +
Preference number: 2 (lower is better)
Translates to: SVYKIAVSSSSVSWLRWTKLMPL*LFPSLS
Trigger: AGACAAGCTGGGGAACAGCCAAAGGGGCATCAACTT...TGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CAA 90 bp CTGTCCTTGACAAAAGGATTCACTTTGCAAGCCTCGATCAGAAATTaGACAACTTCAATGTGCCCTTCAGCTGCAGCGACATGTAGGGCT +
Preference number: 2 (lower is better)
Translates to: LSLTKGFTLQASIRN*TTSMCPSAAATCRA
Trigger: AGCCCTACATGTCGCTGCAGCTGAAGGGCACATTGAAGTTGTCAAATTTCTGATCGAGGCTTGCAAAGTGAATCCTTTTGTCAAGGACAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCAATGGCACCAGCATTaGCCATGGGGTTATGGGGAA +
Preference number: 2 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWQWHQH*PWGYGE
Trigger: TTCCCCATAACCCCATGGTCAATGCTGGTGCCATTG...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp GGCGTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATTATTTTTGGTGGCTGTaGGTTAAATGTGTGGCCAGC +
Preference number: 2 (lower is better)
Translates to: GVLILRKHWPVSPNGCVDYFWWL*VKCVAS
Trigger: GCTGGCCACACATTTAACCCACAGCCACCAAAAATA...ATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAACGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp CAAGTAGGAGTCATGGTAATCTTGAAGCAGTTTGACCACCTCCAGGTGGTTGAATCTGCTCCATATCCATaGCCGACAATGCAAACCTTC +
Preference number: 2 (lower is better)
Translates to: QVGVMVILKQFDHLQVVESAPYP*PTMQTF
Trigger: GAAGGTTTGCATTGTCGGCCATGGATATGGAGCAGA...TTCAACCACCTGGAGGTGGTCAAACTGCTTCAAGATTACCATGACTCCTACTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp GTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCGAATTCCTTCCTCATTaGGGGAGAGTTTGTTATAGC +
Preference number: 2 (lower is better)
Translates to: VLILRKHWPVSPNGCVDPEFLPH*GRVCYS
Trigger: GCTATAACAAACTCTCCCTCAATGAGGAAGGAATTC...GGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp AATGCAAACCTTCGAAGGGCCGAGACATCTCCACTATATGCAGCAAATAGCAGGGAATTCCTTCCTCATTaGGGGAGAGTTTGTTATAGC +
Preference number: 2 (lower is better)
Translates to: NANLRRAETSPLYAANSREFLPH*GRVCYS
Trigger: GCTATAACAAACTCTCCCTCAATGAGGAAGGAATTC...CCTGCTATTTGCTGCATATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp ACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTATATAGCGCAGACCACTaGGTTCCTTGCCCACAAACT +
Preference number: 2 (lower is better)
Translates to: TKYSVYKIAVSSSSVSWLYSADH*VPCPQT
Trigger: AGTTTGTGGGCAAGGAACCCAGTGGTCTGCGCTATA...TAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CCA 90 bp CAAGTAGGAGTCATGGTAATCTTGAAGCAGTTTGACCACCTCCAGGTGGTTGAATTGACCATGGGGTTATaGGGAATTCCTTCCTCATTG +
Preference number: 2 (lower is better)
Translates to: QVGVMVILKQFDHLQVVELTMGL*GIPSSL
Trigger: CAATGAGGAAGGAATTCCCCATAACCCCATGGTCAA...TTCAACCACCTGGAGGTGGTCAAACTGCTTCAAGATTACCATGACTCCTACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp CTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCATGGTAATCTTGAAGCAGTTTCCTCAAAGTCAGGAATaGCAAACTTCTTTCGGAATG +
Preference number: 2 (lower is better)
Translates to: LSLSLREQVGVMVILKQFPQSQE*QTSFGM
Trigger: CATTCCGAAAGAAGTTTGTCATTCCTGACTTTGAGG...AAACTGCTTCAAGATTACCATGACTCCTACTTGCTCTCTGAGACTCAAGCTGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR TCA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCCTCGATCAGAAATTTaGCAACTTCAATGTGCCCTT +
Preference number: 2 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWPRSEI*QLQCAL
Trigger: AAGGGCACATTGAAGTTGTCAAATTTCTGATCGAGG...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR GCA 72 bp TCGTGTGGCCCACAGAGTGCCGCTGCCCATCCACAGTaGACAGGGAGACGCCCCAAAGGTCTGGGTTTGATT +
Preference number: 3 (lower is better)
Translates to: SCGPQSAAAHPQ*TGRRPKGLGLI
Trigger: AATCAAACCCAGACCTTTGGGGCGTCTCCCTGTGCACTGTGGATGGGCAGCGGCACTCTGTGGGCCACACGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR CCA 72 bp TTGACACAGGACTGCAGGCAGAAGGGGATCTTCGTGTaGCCCACAGAGTGCCGCTGCCCATCCACAGTGCAC +
Preference number: 3 (lower is better)
Translates to: LTQDCRQKGIFV*PTECRCPSTVH
Trigger: GTGCACTGTGGATGGGCAGCGGCACTCTGTGGGCCACACGAAGATCCCCTTCTGCCTGCAGTCCTGTGTCAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp CACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCGAGACCACTGGGTTCCTaGCCCACAAACTTGTGCACG +
Preference number: 3 (lower is better)
Translates to: HWPVSPNGCVDPQGSSLPRPLGS*PTNLCT
Trigger: CGTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTCT...CGGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp AAGCAGTTTGACCACCTCCAGGTGGTTGAACTGCACAGCATCGTCCAGGGGAATCCTGACACAGCTGACTaGGCTGGCAGGCCCACATGG +
Preference number: 3 (lower is better)
Translates to: KQFDHLQVVELHSIVQGNPDTAD*AGRPTW
Trigger: CCATGTGGGCCTGCCAGCCAAGTCAGCTGTGTCAGG...ATTCCCCTGGACGATGCTGTGCAGTTCAACCACCTGGAGGTGGTCAAACTGCTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp GGACAGGGTCTCAGCTGCCGCCTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCGAAGTTGATGCCCCTTaGGCTGTTCCCCAGCTTGTC +
Preference number: 3 (lower is better)
Translates to: GQGLSCRLSLSLREQVGVEVDAP*AVPQLV
Trigger: GACAAGCTGGGGAACAGCCAAAGGGGCATCAACTTC...GACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCGGCAGCTGAGACCCTGTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp GGGTCTCAGCTGCCGCCTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCATGGTACCACCTCCAGGTGGTaGAACTGCACAGCATCGTCC +
Preference number: 3 (lower is better)
Translates to: GSQLPPQLESQRASRSHGTTSRW*NCTASS
Trigger: GGACGATGCTGTGCAGTTCAACCACCTGGAGGTGGT...ACCATGACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCGGCAGCTGAGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR TCA 72 bp CACAGTGCACAGGGAGACGCCCCAAAGGTCTGGGTTTaGTTTGGCCAGGTGCGGGATGTAGGCTGCCACTTT +
Preference number: 3 (lower is better)
Translates to: HSAQGDAPKVWV*FGQVRDVGCHF
Trigger: AAAGTGGCAGCCTACATCCCGCACCTGGCCAAATCAAACCCAGACCTTTGGGGCGTCTCCCTGTGCACTGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp GGACAGGGTCTCAGCTGCCGCCTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCGTCAGGAGCACAATGTaGCTGCTCACACACCTGGAT +
Preference number: 3 (lower is better)
Translates to: GQGLSCRLSLSLREQVGVVRSTM*LLTHLD
Trigger: ATCCAGGTGTGTGAGCAGCAACATTGTGCTCCTGAC...GACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCGGCAGCTGAGACCCTGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp CAGCAAATAGCAGGTTCACCACGGTCTTGTTCCGAACCTCTCCTCCTTCCCTCCCCCAAAGGTCTGGGTTaGATTTGGCCAGGTGCGGGA +
Preference number: 3 (lower is better)
Translates to: QQIAGSPRSCSEPLLLPSPKGLG*IWPGAG
Trigger: TCCCGCACCTGGCCAAATCAAACCCAGACCTTTGGG...GGAGGGAAGGAGGAGAGGTTCGGAACAAGACCGTGGTGAACCTGCTATTTGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp CATATCCATGGCCGACAATGCAAACCTTCGAAGGGCCGAGACATCTCCACTATACCTGACACAGCTGACTaGGCTGGCAGGCCCACATGG +
Preference number: 3 (lower is better)
Translates to: HIHGRQCKPSKGRDISTIPDTAD*AGRPTW
Trigger: CCATGTGGGCCTGCCAGCCAAGTCAGCTGTGTCAGG...TATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATTGTCGGCCATGGATATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR TCA 72 bp GCTTGTCTAACGGCGGCGACAGACACATCATGCCCATaGCATTGGGTACAACCAGGAGGATGGCTCCTGACA +
Preference number: 3 (lower is better)
Translates to: ACLTAATDTSCP*HWVQPGGWLLT
Trigger: TGTCAGGAGCCATCCTCCTGGTTGTACCCAATGTCATGGGCATGATGTGTCTGTCGCCGCCGTTAGACAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR TCA 72 bp CTGTGGGTTAAATGTGTGGCCAGCTCATGCTTTTTCTaGAGCAGGGACTGCCCCTGGGCCTGTGCTCATACC +
Preference number: 3 (lower is better)
Translates to: LWVKCVASSCFF*SRDCPWACAHT
Trigger: GGTATGAGCACAGGCCCAGGGGCAGTCCCTGCTTCAGAAAAAGCATGAGCTGGCCACACATTTAACCCACAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CCA 72 bp AGAGACACCAACTTCTGGCAGAAGTTGATGCCCCTTTaGCTGTTCCCCAGCTTGTCTAACGGCGGCGACAGA +
Preference number: 3 (lower is better)
Translates to: RDTNFWQKLMPL*LFPSLSNGGDR
Trigger: TCTGTCGCCGCCGTTAGACAAGCTGGGGAACAGCCAAAGGGGCATCAACTTCTGCCAGAAGTTGGTGTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp CCTCTCCTCCTTCCCTCCGTGGGTCTAACTTCCGAGCGCAGTGCCGCAGGTTGTTCGAACTTCTCTGCTTaGTTACAGTCCATCTTGATC +
Preference number: 3 (lower is better)
Translates to: PLLLPSVGLTSERSAAGCSNFSA*LQSILI
Trigger: GATCAAGATGGACTGTAACAAAGCAGAGAAGTTCGA...ACAACCTGCGGCACTGCGCTCGGAAGTTAGACCCACGGAGGGAAGGAGGAGAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp GCAGTGCCGCAGGTTGTCATAGTTGTGGAAGTTAAAGAGAGACACCAACTTCTGCCTGACACAGCTGACTaGGCTGGCAGGCCCACATGG +
Preference number: 3 (lower is better)
Translates to: AVPQVVIVVEVKERHQLLPDTAD*AGRPTW
Trigger: CCATGTGGGCCTGCCAGCCAAGTCAGCTGTGTCAGG...CAGAAGTTGGTGTCTCTCTTTAACTTCCACAACTATGACAACCTGCGGCACTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR GCA 72 bp TTGATTTGGCCAGGTGCGGGATGTAGGCTGCCACTTTaGCTCCAGTGGGCTCTTTGGCATCCTCAAATATGC +
Preference number: 3 (lower is better)
Translates to: LIWPGAGCRLPL*LQWALWHPQIC
Trigger: GCATATTTGAGGATGCCAAAGAGCCCACTGGAGGCAAAGTGGCAGCCTACATCCCGCACCTGGCCAAATCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp GCTCCATATCCATGGCCGACAATGCAAACCTTCGAAGGGCCGAGACATCTCCACGACTGGAATGTGGCATaGCTGAACCCCATGAATTCG +
Preference number: 3 (lower is better)
Translates to: APYPWPTMQTFEGPRHLHDWNVA*LNPMNS
Trigger: CGAATTCATGGGGTTCAGCAATGCCACATTCCAGTC...GTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATTGTCGGCCATGGATATGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGATGAGGCTGAGGGTGTaGCGCACGGCCTCGGCGCTC +
Preference number: 3 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWMRLRV*RTASAL
Trigger: GAGCGCCGAGGCCGTGCGCAACACCCTCAGCCTCAT...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp GGACAGGGTCTCAGCTGCCGCCTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCGCCTCGATCAGAAATTaGACAACTTCAATGTGCCCT +
Preference number: 3 (lower is better)
Translates to: GQGLSCRLSLSLREQVGVASIRN*TTSMCP
Trigger: AGGGCACATTGAAGTTGTCAAATTTCTGATCGAGGC...GACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCGGCAGCTGAGACCCTGTCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp ACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCTTGCCCCACCTGTCCTaGACAAAAGGATTCACTTTG +
Preference number: 3 (lower is better)
Translates to: TLACVTKWLCRSPRKQLALPHLS*TKGFTL
Trigger: CAAAGTGAATCCTTTTGTCAAGGACAGGTGGGGCAA...GGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR TCA 72 bp GCCGATGGCGTAATTCCGATCCCCAGTCTCCTTCTCTaGCTGGAATGTGGCATTGCTGAACCCCATGAATTC +
Preference number: 3 (lower is better)
Translates to: ADGVIPIPSLLL*LECGIAEPHEF
Trigger: GAATTCATGGGGTTCAGCAATGCCACATTCCAGTCAGAGAAGGAGACTGGGGATCGGAATTACGCCATCGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR GCA 72 bp GGGAGAGTTTGTTATAGCGCAGACCACTGGGTTCCTTaGCCACAAACTTGTGCACGTAGTCAGTGCCTAAGG +
Preference number: 3 (lower is better)
Translates to: GRVCYSADHWVP*PQTCARSQCLR
Trigger: CCTTAGGCACTGACTACGTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTCTGCGCTATAACAAACTCTCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR GCA 72 bp ACTTCTTTCGGAATGCCTGAGTCAGGAGCACAATGTTaGTGCTCACACACCTGGATCCCAGACACGAGTGTG +
Preference number: 3 (lower is better)
Translates to: TSFGMPESGAQC*CSHTWIPDTSV
Trigger: CACACTCGTGTCTGGGATCCAGGTGTGTGAGCAGCAACATTGTGCTCCTGACTCAGGCATTCCGAAAGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp CAGCAAATAGCAGGTTCACCACGGTCTTGTTCCGAACCTCTCCTCCTTCCCTCCGGAGTCATGGTAATCTaGAAGCAGTTTGACCACCTC +
Preference number: 3 (lower is better)
Translates to: QQIAGSPRSCSEPLLLPSGVMVI*KQFDHL
Trigger: GAGGTGGTCAAACTGCTTCAAGATTACCATGACTCC...GGAGGGAAGGAGGAGAGGTTCGGAACAAGACCGTGGTGAACCTGCTATTTGCTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp AGATCAAGGGCAGCCATCATGTCCACACCCTTAGGGAAGCACTTCTTCTCCTTGCTGCTCAGGTATCCATaGAGGCTTTTCTCTGTGCTG +
Preference number: 3 (lower is better)
Translates to: RSRAAIMSTPLGKHFFSLLLRYP*RLFSVL
Trigger: CAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAG...CAAGGAGAAGAAGTGCTTCCCTAAGGGTGTGGACATGATGGCTGCCCTTGATCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp ATAGCAGGTTCACCACGGTCTTGTTCCGAACCTCTCCTCCTTCCCTCCGTGGGTTCGAACTTCTCTGCTTaGTTACAGTCCATCTTGATC +
Preference number: 3 (lower is better)
Translates to: IAGSPRSCSEPLLLPSVGSNFSA*LQSILI
Trigger: GATCAAGATGGACTGTAACAAAGCAGAGAAGTTCGA...ACCCACGGAGGGAAGGAGGAGAGGTTCGGAACAAGACCGTGGTGAACCTGCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp AAGCAGTTTGACCACCTCCAGGTGGTTGAACTGCACAGCATCGTCCAGGGGAATTCGTTCCCAGCCATCTaGTTCAGATACTGTAACACA +
Preference number: 3 (lower is better)
Translates to: KQFDHLQVVELHSIVQGNSFPAI*FRYCNT
Trigger: TGTGTTACAGTATCTGAACAAGATGGCTGGGAACGA...ATTCCCCTGGACGATGCTGTGCAGTTCAACCACCTGGAGGTGGTCAAACTGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp ATGCCCATGACATTGGGTACAACCAGGAGGATGGCTCCTGACACAGCTGACTTGTCGTTCCCAGCCATCTaGTTCAGATACTGTAACACA +
Preference number: 3 (lower is better)
Translates to: MPMTLGTTRRMAPDTADLSFPAI*FRYCNT
Trigger: TGTGTTACAGTATCTGAACAAGATGGCTGGGAACGA...CAAGTCAGCTGTGTCAGGAGCCATCCTCCTGGTTGTACCCAATGTCATGGGCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR GCA 72 bp CACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTaGCGTAGTATTTTTGGTGGCTGTGGGTTAAATGTG +
Preference number: 3 (lower is better)
Translates to: HQMAVSIPKEAA*RSIFGGCGLNV
Trigger: CACATTTAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR GCA 72 bp ATCATAGTCCTTCTGCTCCATATCCATGGCCGACAATaGAAACCTTCGAAGGGCCGAGACATCTCCACTATA +
Preference number: 3 (lower is better)
Translates to: IIVLLLHIHGRQ*KPSKGRDISTI
Trigger: TATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATTGTCGGCCATGGATATGGAGCAGAAGGACTATGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp AGATCAAGGGCAGCCATCATGTCCACACCCTTAGGGAAGCACTTCTTCTCCTTGTCGAACTTCTCTGCTTaGTTACAGTCCATCTTGATC +
Preference number: 3 (lower is better)
Translates to: RSRAAIMSTPLGKHFFSLSNFSA*LQSILI
Trigger: GATCAAGATGGACTGTAACAAAGCAGAGAAGTTCGA...CAAGGAGAAGAAGTGCTTCCCTAAGGGTGTGGACATGATGGCTGCCCTTGATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CCA 72 bp GTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTaGCTAAGATGGACAGATCTCCGCAGACTTCTAAAG +
Preference number: 3 (lower is better)
Translates to: VYKIAVSSSSVS*LRWTDLRRLLK
Trigger: CTTTAGAAGTCTGCGGAGATCTGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTGCTCAGGTATCCATaGAGGCTTTTCTCTGTGCTG +
Preference number: 3 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWLLRYP*RLFSVL
Trigger: CAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAG...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp ACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTACTGCTCAGGTATCCATaGAGGCTTTTCTCTGTGCTG +
Preference number: 3 (lower is better)
Translates to: TKYSVYKIAVSSSSVSWLLLRYP*RLFSVL
Trigger: CAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAG...TAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR TCA 72 bp CAAAAGGATTCACTTTGCAAGCCTCGATCAGAAATTTaGCAACTTCAATGTGCCCTTCAGCTGCAGCGACAT +
Preference number: 3 (lower is better)
Translates to: QKDSLCKPRSEI*QLQCALQLQRH
Trigger: ATGTCGCTGCAGCTGAAGGGCACATTGAAGTTGTCAAATTTCTGATCGAGGCTTGCAAAGTGAATCCTTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGACTCTGTCTATAAAATaGCTGTCAGCAGTAGCAGCG +
Preference number: 3 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWTLSIK*LSAVAA
Trigger: CGCTGCTACTGCTGACAGCAATTTTATAGACAGAGT...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR-3UTR CAA 90 bp ACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTATCGTTCCCAGCCATCTaGTTCAGATACTGTAACACA +
Preference number: 3 (lower is better)
Translates to: TKYSVYKIAVSSSSVSWLSFPAI*FRYCNT
Trigger: TGTGTTACAGTATCTGAACAAGATGGCTGGGAACGA...TAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp CCTGTGATAGGGCAGATGCCGCCATTGGCCAGAGTGGCCGCCATGACACTGCCTTGTGCGGCGTCCCCCTaGCCTGCGCTGCGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: PVIGQMPPLARVAAMTLPCAASP*PALRPH
Trigger: GTGAGGCCGCAGCGCAGGGCAGGGGGACGCCGCACA...AGGCAGTGTCATGGCGGCCACTCTGGCCAATGGCGGCATCTGCCCTATCACAGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp CTGACACAGCTGACTTGGCTGGCAGGCCCACATGGAAGGCAAACTGGCCCGAGAGAGTGCTGCGGCTGGTaGCTGTGCGGCGTCCCCCTG +
Preference number: 4 (lower is better)
Translates to: LTQLTWLAGPHGRQTGPRECCGW*LCGVPL
Trigger: CAGGGGGACGCCGCACAGCCACCAGCCGCAGCACTC...TCTCGGGCCAGTTTGCCTTCCATGTGGGCCTGCCAGCCAAGTCAGCTGTGTCAG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp CCCAGCTTGTCTAACGGCGGCGACAGACACATCATGCCCATGACATTGGGTACATGCGGCTGGTGGCTGTaGGGCGTCCCCCTGCCCTGC +
Preference number: 4 (lower is better)
Translates to: PSLSNGGDRHIMPMTLGTCGWWL*GVPLPC
Trigger: GCAGGGCAGGGGGACGCCGCACAGCCACCAGCCGCA...TGTACCCAATGTCATGGGCATGATGTGTCTGTCGCCGCCGTTAGACAAGCTGGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp AACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCTGCGGCTGGTGGCTGTaGGGCGTCCCCCTGCCCTGC +
Preference number: 4 (lower is better)
Translates to: NTGLCHQMAVSIPKEAACCGWWL*GVPLPC
Trigger: GCAGGGCAGGGGGACGCCGCACAGCCACCAGCCGCA...GCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp ACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCGAGTGCTGCGGCTGGTaGCTGTGCGGCGTCCCCCTG +
Preference number: 4 (lower is better)
Translates to: TLACVTKWLCRSPRKQLAECCGW*LCGVPL
Trigger: CAGGGGGACGCCGCACAGCCACCAGCCGCAGCACTC...GGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR TCA 90 bp CACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCGCTGGAGCCGTGGGTCTaGCGTCTGCAGTCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: HWPVSPNGCVDPQGSSLPLEPWV*RLQSSG
Trigger: GCCACTGGACTGCAGACGTCAGACCCACGGCTCCAG...CGGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp CAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGTGTGCGGCGTCCCCCTaGCCTGCGCTGCGGCCTCAC +
Preference number: 4 (lower is better)
Translates to: QKTLACVTKWLCRSPRKQCAASP*PALRPH
Trigger: GTGAGGCCGCAGCGCAGGGCAGGGGGACGCCGCACA...CTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTAGAGTGCTGCGGCTGGTaGCTGTGCGGCGTCCCCCTG +
Preference number: 4 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVECCGW*LCGVPL
Trigger: CAGGGGGACGCCGCACAGCCACCAGCCGCAGCACTC...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CAA 72 bp AGCACGCTCTCCCCTGTGATAGGGCAGATGCCGCCATaGGCCAGAGTGGCCGCCATGACACTGCCTGACTCA +
Preference number: 4 (lower is better)
Translates to: STLSPVIGQMPP*ARVAAMTLPDS
Trigger: TGAGTCAGGCAGTGTCATGGCGGCCACTCTGGCCAATGGCGGCATCTGCCCTATCACAGGGGAGAGCGTGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp GGGAGAGTTTGTTATAGCGCAGACCACTGGGTTCCTTGCCCACAAACTTGTGCATGCGGCTGGTGGCTGTaGGGCGTCCCCCTGCCCTGC +
Preference number: 4 (lower is better)
Translates to: GRVCYSADHWVPCPQTCACGWWL*GVPLPC
Trigger: GCAGGGCAGGGGGACGCCGCACAGCCACCAGCCGCA...TGCACAAGTTTGTGGGCAAGGAACCCAGTGGTCTGCGCTATAACAAACTCTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CAA 72 bp GGTACAACCAGGAGGATGGCTCCTGACACAGCTGACTaGGCTGGCAGGCCCACATGGAAGGCAAACTGGCCC +
Preference number: 4 (lower is better)
Translates to: GTTRRMAPDTAD*AGRPTWKANWP
Trigger: GGGCCAGTTTGCCTTCCATGTGGGCCTGCCAGCCAAGTCAGCTGTGTCAGGAGCCATCCTCCTGGTTGTACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp GGCGACAGACACATCATGCCCATGACATTGGGTACAACCAGGAGGATGGCTCCTCGGCTCAGCGCGTTCTaGAGAGCCCTCATGGAGCGC +
Preference number: 4 (lower is better)
Translates to: GDRHIMPMTLGTTRRMAPRLSAF*RALMER
Trigger: GCGCTCCATGAGGGCTCTGCAGAACGCGCTGAGCCG...AGGAGCCATCCTCCTGGTTGTACCCAATGTCATGGGCATGATGTGTCTGTCGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp CTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGTCCGAGTGCTGCGGCTaGTGGCTGTGCGGCGTCCCC +
Preference number: 4 (lower is better)
Translates to: LELYLEVSVASSAQVSIESECCG*WLCGVP
Trigger: GGGGACGCCGCACAGCCACCAGCCGCAGCACTCGGA...CTCAATGGATACCTGAGCAGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CAA 72 bp CCACAGTGCACAGGGAGACGCCCCAAAGGTCTGGGTTaGATTTGGCCAGGTGCGGGATGTAGGCTGCCACTT +
Preference number: 4 (lower is better)
Translates to: PQCTGRRPKGLG*IWPGAGCRLPL
Trigger: AAGTGGCAGCCTACATCCCGCACCTGGCCAAATCAAACCCAGACCTTTGGGGCGTCTCCCTGTGCACTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
CDS-3UTR TCA 90 bp GTAAAGACCCGGGCTACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTCTGGAGCCGTGGGTCTaGCGTCTGCAGTCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: VKTRATLELYLEVSVASSLEPWV*RLQSSG
Trigger: GCCACTGGACTGCAGACGTCAGACCCACGGCTCCAG...AGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGTAGCCCGGGTCTTTAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp GTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCTGCGGCTGGTGGCTGTaGGGCGTCCCCCTGCCCTGC +
Preference number: 4 (lower is better)
Translates to: VLILRKHWPVSPNGCVDPCGWWL*GVPLPC
Trigger: GCAGGGCAGGGGGACGCCGCACAGCCACCAGCCGCA...GGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTAGCTGGCAGGCCCACATaGAAGGCAAACTGGCCCGAG +
Preference number: 4 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVAGRPT*KANWPE
Trigger: CTCGGGCCAGTTTGCCTTCCATGTGGGCCTGCCAGC...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR GCA 90 bp GGGTCTCAGCTGCCGCCTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCATGGTCGTGGGTCTGACGTCTaGAGTCCAGTGGCCTTCAGA +
Preference number: 4 (lower is better)
Translates to: GSQLPPQLESQRASRSHGRGSDV*SPVAFR
Trigger: TCTGAAGGCCACTGGACTGCAGACGTCAGACCCACG...ACCATGACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCGGCAGCTGAGACCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp AACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCCAAGAGGCCACCGCTaGTGGACTCTTGGACCATGC +
Preference number: 4 (lower is better)
Translates to: NTGLCHQMAVSIPKEAACPRGHR*WTLGPC
Trigger: GCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGG...GCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp AACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCAGAGGCCACCGCTGCTaGACTCTTGGACCATGCGCT +
Preference number: 4 (lower is better)
Translates to: NTGLCHQMAVSIPKEAACRGHRC*TLGPCA
Trigger: AGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCT...GCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp AGCGCAGACCACTGGGTTCCTTGCCCACAAACTTGTGCACGTAGTCAGTGCCTAAAGGGGATCTTCGTGTaGCCCACAGAGTGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: SADHWVPCPQTCARSQCLKGIFV*PTECRC
Trigger: GCAGCGGCACTCTGTGGGCCACACGAAGATCCCCTT...TAGGCACTGACTACGTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTCTGCGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143827.8
CDS-3UTR TCA 90 bp AACCTTCGAAGGGCCGAGACATCTCCACTATATGCAGCAAATAGCAGGTTCACCCTGGAGCCGTGGGTCTaGCGTCTGCAGTCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: NLRRAETSPLYAANSRFTLEPWV*RLQSSG
Trigger: GCCACTGGACTGCAGACGTCAGACCCACGGCTCCAG...GGTGAACCTGCTATTTGCTGCATATAGTGGAGATGTCTCGGCCCTTCGAAGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR TCA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTACGCCATGACACTGCCTaGCTCACAGGTAACCTCCAC +
Preference number: 4 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVRHDTA*LTGNLH
Trigger: GTGGAGGTTACCTGTGAGTCAGGCAGTGTCATGGCG...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR TCA 90 bp GCTGTGTCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGCCACCTCCAGGTGGTTaGACTGCACAGCATCGTCCA +
Preference number: 4 (lower is better)
Translates to: AVSIPKEAACRSIFGGCGPPPGG*TAQHRP
Trigger: TGGACGATGCTGTGCAGTTCAACCACCTGGAGGTGG...CCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACACAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR GCA 90 bp TCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGCACCGGCTCAGCGCGTTCTaGAGAGCCCTCATGGAGCGC +
Preference number: 4 (lower is better)
Translates to: SVASSAQVSIEAFLCAVHRLSAF*RALMER
Trigger: GCGCTCCATGAGGGCTCTGCAGAACGCGCTGAGCCG...GTGCACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGCTAGCTACAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044776.13
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp AACCTTCGAAGGGCCGAGACATCTCCACTATATGCAGCAAATAGCAGGTTCACCCGGCTCAGCGCGTTCTaGAGAGCCCTCATGGAGCGC +
Preference number: 4 (lower is better)
Translates to: NLRRAETSPLYAANSRFTRLSAF*RALMER
Trigger: GCGCTCCATGAGGGCTCTGCAGAACGCGCTGAGCCG...GGTGAACCTGCTATTTGCTGCATATAGTGGAGATGTCTCGGCCCTTCGAAGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTACAAGTCGAGGCAGCATaGCGCTGTGTGAGGCGTCAT +
Preference number: 4 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVQVEAA*RCVRRH
Trigger: ATGACGCCTCACACAGCGGCATGCTGCCTCGACTTG...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp CAGCAAATAGCAGGTTCACCACGGTCTTGTTCCGAACCTCTCCTCCTTCCCTCCCAAGTCGAGGCAGCATaGCGCTGTGTGAGGCGTCAT +
Preference number: 4 (lower is better)
Translates to: QQIAGSPRSCSEPLLLPSQVEAA*RCVRRH
Trigger: ATGACGCCTCACACAGCGGCATGCTGCCTCGACTTG...GGAGGGAAGGAGGAGAGGTTCGGAACAAGACCGTGGTGAACCTGCTATTTGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp AGCGCAGACCACTGGGTTCCTTGCCCACAAACTTGTGCACGTAGTCAGTGCCTACGTGGGTCTGACGTCTaGAGTCCAGTGGCCTTCAGA +
Preference number: 4 (lower is better)
Translates to: SADHWVPCPQTCARSQCLRGSDV*SPVAFR
Trigger: TCTGAAGGCCACTGGACTGCAGACGTCAGACCCACG...TAGGCACTGACTACGTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTCTGCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp AGCGCAGACCACTGGGTTCCTTGCCCACAAACTTGTGCACGTAGTCAGTGCCTACCATGCGCTGCATCTTaGTCATGCAGTCCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: SADHWVPCPQTCARSQCLPCAAS*SCSPGA
Trigger: GGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGG...TAGGCACTGACTACGTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTCTGCGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp GGACAGGGTCTCAGCTGCCGCCTCAGCTTGAGTCTCAGAGAGCAAGTAGGAGTCTCTTGGACCATGCGCTaGATCTTGCTCATGCAGTCC +
Preference number: 4 (lower is better)
Translates to: GQGLSCRLSLSLREQVGVSWTMR*ILLMQS
Trigger: GGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGA...GACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCGGCAGCTGAGACCCTGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp TCCAGGTGGTTGAACTGCACAGCATCGTCCAGGGGAATGTTGCCCCACCTGTCCTGGACTCTTGGACCATaGGCTGCATCTTGCTCATGC +
Preference number: 4 (lower is better)
Translates to: SRWLNCTASSRGMLPHLSWTLGP*AASCSC
Trigger: GCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCA...GGACAGGTGGGGCAACATTCCCCTGGACGATGCTGTGCAGTTCAACCACCTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp AAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAAGATGGACAGATCTCCGCCCCACAGAGTGCCGCTaGCCATCCACAGTGCACAGG +
Preference number: 4 (lower is better)
Translates to: KIAVSSSSVSWLRWTDLRPTECR*PSTVHR
Trigger: CCTGTGCACTGTGGATGGGCAGCGGCACTCTGTGGG...GCGGAGATCTGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000143827.8
CDS-3UTR GCA 90 bp GGAGAGTTTGTTATAGCGCAGACCACTGGGTTCCTTGCCCACAAACTTGTGCACCCCACAGAGTGCCGCTaGCCATCCACAGTGCACAGG +
Preference number: 4 (lower is better)
Translates to: GEFVIAQTTGFLAHKLVHPTECR*PSTVHR
Trigger: CCTGTGCACTGTGGATGGGCAGCGGCACTCTGTGGG...GTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTCTGCGCTATAACAAACTCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143827.8
CDS-3UTR GCA 90 bp AATGTGTGGCCAGCTCATGCTTTTTCTGAAGCAGGGACTGCCCCTGGGCCTGTGGGCTTGACACAGGACTaGAGGCAGAAGGGGATCTTC +
Preference number: 4 (lower is better)
Translates to: NVWPAHAFSEAGTAPGPVGLTQD*RQKGIF
Trigger: GAAGATCCCCTTCTGCCTGCAGTCCTGTGTCAAGCC...CACAGGCCCAGGGGCAGTCCCTGCTTCAGAAAAAGCATGAGCTGGCCACACATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
CDS-3UTR CCA 90 bp GTAAAGACCCGGGCTACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTAGAGGCCACCGCTGCTaGACTCTTGGACCATGCGCT +
Preference number: 4 (lower is better)
Translates to: VKTRATLELYLEVSVASSRGHRC*TLGPCA
Trigger: AGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCT...AGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGTAGCCCGGGTCTTTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp TCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCACCAAGAGGCCACCGCTaGTGGACTCTTGGACCATGC +
Preference number: 4 (lower is better)
Translates to: SENTGLCHQMAVSIPKEAPRGHR*WTLGPC
Trigger: GCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGG...TGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp TCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTGCCCATCCACAGTaGACAGGGAGACGCCCCAAA +
Preference number: 4 (lower is better)
Translates to: SENTGLCHQMAVSIPKEAAAHPQ*TGRRPK
Trigger: TTTGGGGCGTCTCCCTGTGCACTGTGGATGGGCAGC...TGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000143827.8
CDS-3UTR CCA 90 bp CTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGAGAGGCCACCGCTGCTaGACTCTTGGACCATGCGCT +
Preference number: 4 (lower is better)
Translates to: LELYLEVSVASSAQVSIERGHRC*TLGPCA
Trigger: AGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCT...CTCAATGGATACCTGAGCAGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAG
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp AACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCGGTCTGGGTTTGATTTaGCCAGGTGCGGGATGTAGG +
Preference number: 4 (lower is better)
Translates to: NTGLCHQMAVSIPKEAACGLGLI*PGAGCR
Trigger: CCTACATCCCGCACCTGGCCAAATCAAACCCAGACC...GCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000143827.8
CDS-3UTR GCA 90 bp AAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAAGATGGACAGATCTCCGCCAAGTCGAGGCAGCATaGCGCTGTGTGAGGCGTCAT +
Preference number: 4 (lower is better)
Translates to: KIAVSSSSVSWLRWTDLRQVEAA*RCVRRH
Trigger: ATGACGCCTCACACAGCGGCATGCTGCCTCGACTTG...GCGGAGATCTGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp AAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAAGATGGACAGATCTCCGCCGTGGGTCTGACGTCTaGAGTCCAGTGGCCTTCAGA +
Preference number: 4 (lower is better)
Translates to: KIAVSSSSVSWLRWTDLRRGSDV*SPVAFR
Trigger: TCTGAAGGCCACTGGACTGCAGACGTCAGACCCACG...GCGGAGATCTGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp GTGTCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTACCATGCGCTGCATCTTaGTCATGCAGTCCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: VSIPKEAACRSIFGGCGLPCAAS*SCSPGA
Trigger: GGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGG...TAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp GGGGTTATGGGGAATTCCTTCCTCATTGAGGGAGAGTTTGTTATAGCGCAGACCGCTGCCCATCCACAGTaGACAGGGAGACGCCCCAAA +
Preference number: 4 (lower is better)
Translates to: GVMGNSFLIEGEFVIAQTAAHPQ*TGRRPK
Trigger: TTTGGGGCGTCTCCCTGTGCACTGTGGATGGGCAGC...GGTCTGCGCTATAACAAACTCTCCCTCAATGAGGAAGGAATTCCCCATAACCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000143827.8
CDS-3UTR GCA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTAGTGCGGGATGTAGGCTaGCACTTTTGGAAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVVRDVG*HFWKSS
Trigger: AGAGCTCTTCCAAAAGTGGCAGCCTACATCCCGCAC...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000143827.8
CDS-3UTR CCA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGGAGTGCTGCGGCTGGTaGCTGTGCGGCGTCCCCCTG +
Preference number: 4 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWECCGW*LCGVPL
Trigger: CAGGGGGACGCCGCACAGCCACCAGCCGCAGCACTC...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp CAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGGGTCTGGGTTTGATTTaGCCAGGTGCGGGATGTAGG +
Preference number: 4 (lower is better)
Translates to: QKTLACVTKWLCRSPRKQGLGLI*PGAGCR
Trigger: CCTACATCCCGCACCTGGCCAAATCAAACCCAGACC...CTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000143827.8
CDS-3UTR CCA 90 bp ACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCTATAGCGCAGACCACTaGGTTCCTTGCCCACAAACT +
Preference number: 4 (lower is better)
Translates to: TLACVTKWLCRSPRKQLAYSADH*VPCPQT
Trigger: AGTTTGTGGGCAAGGAACCCAGTGGTCTGCGCTATA...GGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CCA 90 bp GGCGACAGACACATCATGCCCATGACATTGGGTACAACCAGGAGGATGGCTCCTGTAGGCTGCCACTTTTaGAAGAGCTCTCGGTCCAAG +
Preference number: 4 (lower is better)
Translates to: GDRHIMPMTLGTTRRMAPVGCHF*KSSRSK
Trigger: CTTGGACCGAGAGCTCTTCCAAAAGTGGCAGCCTAC...AGGAGCCATCCTCCTGGTTGTACCCAATGTCATGGGCATGATGTGTCTGTCGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143827.8
3UTR CAA 72 bp CCACTATATGCAGCAAATAGCAGGTTCACCACGGTCTaGTTCCGAACCTCTCCTCCTTCCCTCCGTGGGTCT +
Preference number: 4 (lower is better)
Translates to: PLYAANSRFTTV*FRTSPPSLRGS
Trigger: AGACCCACGGAGGGAAGGAGGAGAGGTTCGGAACAAGACCGTGGTGAACCTGCTATTTGCTGCATATAGTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR TCA 90 bp ACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCTTCTTTCGGAATGCCTaGGTCAGGAGCACAATGTTG +
Preference number: 4 (lower is better)
Translates to: TLACVTKWLCRSPRKQLAFFRNA*VRSTML
Trigger: CAACATTGTGCTCCTGACTCAGGCATTCCGAAAGAA...GGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR TCA 90 bp CAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGGATCCACATGGCCCGTaGACTCCTCAAAGTCAGGAA +
Preference number: 4 (lower is better)
Translates to: QKTLACVTKWLCRSPRKQDPHGP*TPQSQE
Trigger: TTCCTGACTTTGAGGAGTTCACGGGCCATGTGGATC...CTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR TCA 90 bp GTGTCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTACCAAAGGTCTGGGTTTaGTTTGGCCAGGTGCGGGAT +
Preference number: 4 (lower is better)
Translates to: VSIPKEAACRSIFGGCGLPKVWV*FGQVRD
Trigger: ATCCCGCACCTGGCCAAATCAAACCCAGACCTTTGG...TAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000143827.8
CDS-3UTR TCA 90 bp GTAAAGACCCGGGCTACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTCAATGGCACCAGCATTaGCCATGGGGTTATGGGGAA +
Preference number: 4 (lower is better)
Translates to: VKTRATLELYLEVSVASSQWHQH*PWGYGE
Trigger: TTCCCCATAACCCCATGGTCAATGCTGGTGCCATTG...AGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGTAGCCCGGGTCTTTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR GCA 90 bp ACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTCGTGGGTCTGACGTCTaGAGTCCAGTGGCCTTCAGA +
Preference number: 4 (lower is better)
Translates to: TLELYLEVSVASSAQVSIRGSDV*SPVAFR
Trigger: TCTGAAGGCCACTGGACTGCAGACGTCAGACCCACG...AATGGATACCTGAGCAGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp ATGCCCATGACATTGGGTACAACCAGGAGGATGGCTCCTGACACAGCTGACTTGTCTTGGACCATGCGCTaGATCTTGCTCATGCAGTCC +
Preference number: 4 (lower is better)
Translates to: MPMTLGTTRRMAPDTADLSWTMR*ILLMQS
Trigger: GGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGA...CAAGTCAGCTGTGTCAGGAGCCATCCTCCTGGTTGTACCCAATGTCATGGGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp AACTTCTGGCAGAAGTTGATGCCCCTTTGGCTGTTCCCCAGCTTGTCTAACGGCTGGACTCTTGGACCATaGGCTGCATCTTGCTCATGC +
Preference number: 4 (lower is better)
Translates to: NFWQKLMPLWLFPSLSNGWTLGP*AASCSC
Trigger: GCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCA...GCCGTTAGACAAGCTGGGGAACAGCCAAAGGGGCATCAACTTCTGCCAGAAGTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp TCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTAAATCCAAGAGGCCACCGCTaGTGGACTCTTGGACCATGC +
Preference number: 4 (lower is better)
Translates to: SIPKEAACRSIFGGCGLNPRGHR*WTLGPC
Trigger: GCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGG...ATTTAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp CCATATCCATGGCCGACAATGCAAACCTTCGAAGGGCCGAGACATCTCCACTATGGCTTGACACAGGACTaGAGGCAGAAGGGGATCTTC +
Preference number: 4 (lower is better)
Translates to: PYPWPTMQTFEGPRHLHYGLTQD*RQKGIF
Trigger: GAAGATCCCCTTCTGCCTGCAGTCCTGTGTCAAGCC...ATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATTGTCGGCCATGGATATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
CDS-3UTR GCA 90 bp AATGTGTGGCCAGCTCATGCTTTTTCTGAAGCAGGGACTGCCCCTGGGCCTGTGTTGACAACTTCAATGTaGCCTTCAGCTGCAGCGACA +
Preference number: 4 (lower is better)
Translates to: NVWPAHAFSEAGTAPGPVLTTSM*PSAAAT
Trigger: TGTCGCTGCAGCTGAAGGGCACATTGAAGTTGTCAA...CACAGGCCCAGGGGCAGTCCCTGCTTCAGAAAAAGCATGAGCTGGCCACACATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR GCA 90 bp GTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCGGACAGGGTCTCAGCTaGCGCCTCAGCTTGAGTCTC +
Preference number: 4 (lower is better)
Translates to: VLILRKHWPVSPNGCVDPGQGLS*RLSLSL
Trigger: GAGACTCAAGCTGAGGCGGCAGCTGAGACCCTGTCC...GGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CCA 90 bp CGTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCAGAGGCCACCGCTGCTaGACTCTTGGACCATGCGCT +
Preference number: 4 (lower is better)
Translates to: RFDSQKTLACVTKWLCRSRGHRC*TLGPCA
Trigger: AGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCT...GGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp ACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCAATATGCGATCCACATaGCCCGTGAACTCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: TLACVTKWLCRSPRKQLANMRST*PVNSSK
Trigger: CTTTGAGGAGTTCACGGGCCATGTGGATCGCATATT...GGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR CCA 90 bp AAGCAGTTTGACCACCTCCAGGTGGTTGAACTGCACAGCATCGTCCAGGGGAATGTGCTTTGCCTCCAGTaGGCTCTTTGGCATCCTCAA +
Preference number: 4 (lower is better)
Translates to: KQFDHLQVVELHSIVQGNVLCLQ*ALWHPQ
Trigger: TTGAGGATGCCAAAGAGCCCACTGGAGGCAAAGCAC...ATTCCCCTGGACGATGCTGTGCAGTTCAACCACCTGGAGGTGGTCAAACTGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134104.8
CDS-3UTR CCA 90 bp CCATATCCATGGCCGACAATGCAAACCTTCGAAGGGCCGAGACATCTCCACTATAAGGGGATCTTCGTGTaGCCCACAGAGTGCTTTGCC +
Preference number: 4 (lower is better)
Translates to: PYPWPTMQTFEGPRHLHYKGIFV*PTECFA
Trigger: GGCAAAGCACTCTGTGGGCCACACGAAGATCCCCTT...ATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATTGTCGGCCATGGATATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134104.8
CDS-3UTR TCA 90 bp GTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCCACCTCCAGGTGGTTaGACTGCACAGCATCGTCCA +
Preference number: 4 (lower is better)
Translates to: VLILRKHWPVSPNGCVDPPPPGG*TAQHRP
Trigger: TGGACGATGCTGTGCAGTTCAACCACCTGGAGGTGG...GGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR GCA 90 bp GGCGTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCAAGTCGAGGCAGCATaGCGCTGTGTGAGGCGTCAT +
Preference number: 4 (lower is better)
Translates to: GVLILRKHWPVSPNGCVDQVEAA*RCVRRH
Trigger: ATGACGCCTCACACAGCGGCATGCTGCCTCGACTTG...ATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAACGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp GCAGTGCCGCAGGTTGTCATAGTTGTGGAAGTTAAAGAGAGACACCAACTTCTGCCATGCGCTGCATCTTaGTCATGCAGTCCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: AVPQVVIVVEVKERHQLLPCAAS*SCSPGA
Trigger: GGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGG...CAGAAGTTGGTGTCTCTCTTTAACTTCCACAACTATGACAACCTGCGGCACTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp AAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAAGATGGACAGATCTCCGCTCTTGGACCATGCGCTaGATCTTGCTCATGCAGTCC +
Preference number: 4 (lower is better)
Translates to: KIAVSSSSVSWLRWTDLRSWTMR*ILLMQS
Trigger: GGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGA...GCGGAGATCTGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp TCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCATGGACTCTTGGACCATaGGCTGCATCTTGCTCATGC +
Preference number: 4 (lower is better)
Translates to: SENTGLCHQMAVSIPKEAWTLGP*AASCSC
Trigger: GCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCA...TGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp ACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCTCAGGAGCACAATGTTaGTGCTCACACACTTTTGGA +
Preference number: 4 (lower is better)
Translates to: TLACVTKWLCRSPRKQLASGAQC*CSHTFG
Trigger: TCCAAAAGTGTGTGAGCAGCAACATTGTGCTCCTGA...GGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR GCA 90 bp TCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAAGTCAGTGCCTAAGGTaGTCACGGAGATGGCGTAAG +
Preference number: 4 (lower is better)
Translates to: SENTGLCHQMAVSIPKEASQCLR*SRRWRK
Trigger: CTTACGCCATCTCCGTGAGCACCTTAGGCACTGACT...TGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR GCA 90 bp AACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCTTGACAACTTCAATGTaGCCTTCAGCTGCAGCGACA +
Preference number: 4 (lower is better)
Translates to: NTGLCHQMAVSIPKEAACLTTSM*PSAAAT
Trigger: TGTCGCTGCAGCTGAAGGGCACATTGAAGTTGTCAA...GCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR GCA 90 bp TCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAAGATGGACAGGACAGGGTCTCAGCTaGCGCCTCAGCTTGAGTCTC +
Preference number: 4 (lower is better)
Translates to: SVYKIAVSSSSVSWLRWTGQGLS*RLSLSL
Trigger: GAGACTCAAGCTGAGGCGGCAGCTGAGACCCTGTCC...TGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CCA 90 bp AGATCAAGGGCAGCCATCATGTCCACACCCTTAGGGAAGCACTTCTTCTCCTTGGCCGTGGTGAACTTGTaGATAGGGATACGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: RSRAAIMSTPLGKHFFSLAVVNL*IGIRSC
Trigger: ACAGGAGCGTATCCCTATCCACAAGTTCACCACGGC...CAAGGAGAAGAAGTGCTTCCCTAAGGGTGTGGACATGATGGCTGCCCTTGATCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp AAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAAGATGGACAGATCTCCGCGCCGTGGTGAACTTGTaGATAGGGATACGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: KIAVSSSSVSWLRWTDLRAVVNL*IGIRSC
Trigger: ACAGGAGCGTATCCCTATCCACAAGTTCACCACGGC...GCGGAGATCTGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp CCACAGAGCACAGCTGGAAATAGAGATCAAGGGCAGCCATCATGTCCACACCCTCTGCTCACACACTTTTaGAAGAGCTCTCGGTCCAAG +
Preference number: 4 (lower is better)
Translates to: PQSTAGNRDQGQPSCPHPLLTHF*KSSRSK
Trigger: CTTGGACCGAGAGCTCTTCCAAAAGTGTGTGAGCAG...AGGGTGTGGACATGATGGCTGCCCTTGATCTCTATTTCCAGCTGTGCTCTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134104.8
CDS-3UTR CCA 90 bp AAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAAGATGGACAGATCTCCGCGTACAACCAGGAGGATaGCTCCTGACACAGCTGACT +
Preference number: 4 (lower is better)
Translates to: KIAVSSSSVSWLRWTDLRVQPGG*LLTQLT
Trigger: AGTCAGCTGTGTCAGGAGCCATCCTCCTGGTTGTAC...GCGGAGATCTGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CCA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTATCTGCTCCATATCCATaGCCGACAATGCAAACCTTC +
Preference number: 4 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVSAPYP*PTMQTF
Trigger: GAAGGTTTGCATTGTCGGCCATGGATATGGAGCAGA...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CCA 90 bp TCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCATTGACCACCTCCAGGTaGTTGAACTGCACAGCATCG +
Preference number: 4 (lower is better)
Translates to: SENTGLCHQMAVSIPKEALTTSR*LNCTAS
Trigger: CGATGCTGTGCAGTTCAACCACCTGGAGGTGGTCAA...TGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR TCA 90 bp TCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTAAATCCAAAGGTCTGGGTTTaGTTTGGCCAGGTGCGGGAT +
Preference number: 4 (lower is better)
Translates to: SIPKEAACRSIFGGCGLNPKVWV*FGQVRD
Trigger: ATCCCGCACCTGGCCAAATCAAACCCAGACCTTTGG...ATTTAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000143827.8
CDS-3UTR GCA 90 bp CTCATTGAGGGAGAGTTTGTTATAGCGCAGACCACTGGGTTCCTTGCCCACAAATGGACTCTTGGACCATaGGCTGCATCTTGCTCATGC +
Preference number: 4 (lower is better)
Translates to: LIEGEFVIAQTTGFLAHKWTLGP*AASCSC
Trigger: GCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCA...TTTGTGGGCAAGGAACCCAGTGGTCTGCGCTATAACAAACTCTCCCTCAATGAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp TCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGCACGACCACTGGGTTCCTTaGCCACAAACTTGTGCACGT +
Preference number: 4 (lower is better)
Translates to: SVASSAQVSIEAFLCAVHDHWVP*PQTCAR
Trigger: ACGTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTC...GTGCACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGCTAGCTACAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CCA 90 bp CATATCCATGGCCGACAATGCAAACCTTCGAAGGGCCGAGACATCTCCACTATAGCCGTGGTGAACTTGTaGATAGGGATACGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: HIHGRQCKPSKGRDISTIAVVNL*IGIRSC
Trigger: ACAGGAGCGTATCCCTATCCACAAGTTCACCACGGC...TATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATTGTCGGCCATGGATATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp TCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAAAGTTGATGCCCCTTTaGCTGTTCCCCAGCTTGTCT +
Preference number: 4 (lower is better)
Translates to: SENTGLCHQMAVSIPKEAKLMPL*LFPSLS
Trigger: AGACAAGCTGGGGAACAGCCAAAGGGGCATCAACTT...TGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CCA 90 bp GTAAAGACCCGGGCTACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTAGAGACACCAACTTCTaGCAGAAGTTGATGCCCCTT +
Preference number: 4 (lower is better)
Translates to: VKTRATLELYLEVSVASSRDTNF*QKLMPL
Trigger: AAGGGGCATCAACTTCTGCCAGAAGTTGGTGTCTCT...AGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGTAGCCCGGGTCTTTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CCA 90 bp GGGCGTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATTGACCACCTCCAGGTaGTTGAACTGCACAGCATCG +
Preference number: 4 (lower is better)
Translates to: GRFDSQKTLACVTKWLCRLTTSR*LNCTAS
Trigger: CGATGCTGTGCAGTTCAACCACCTGGAGGTGGTCAA...TCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAACGCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
3UTR CAA 72 bp ATTCTCTTTGGACAGGGTCTCAGCTGCCGCCTCAGCTaGAGTCTCAGAGAGCAAGTAGGAGTCATGGTAATC +
Preference number: 4 (lower is better)
Translates to: ILFGQGLSCRLS*SLREQVGVMVI
Trigger: GATTACCATGACTCCTACTTGCTCTCTGAGACTCAAGCTGAGGCGGCAGCTGAGACCCTGTCCAAAGAGAAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR TCA 90 bp GTGTCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTATTCTTTCGGAATGCCTaGGTCAGGAGCACAATGTTG +
Preference number: 4 (lower is better)
Translates to: VSIPKEAACRSIFGGCGLFFRNA*VRSTML
Trigger: CAACATTGTGCTCCTGACTCAGGCATTCCGAAAGAA...TAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR TCA 90 bp CGTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCGATCCACATGGCCCGTaGACTCCTCAAAGTCAGGAA +
Preference number: 4 (lower is better)
Translates to: RFDSQKTLACVTKWLCRSDPHGP*TPQSQE
Trigger: TTCCTGACTTTGAGGAGTTCACGGGCCATGTGGATC...GGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAACG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR TCA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTAGAATTCCTTCCTCATTaGGGGAGAGTTTGTTATAGC +
Preference number: 4 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVEFLPH*GRVCYS
Trigger: GCTATAACAAACTCTCCCTCAATGAGGAAGGAATTC...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR TCA 90 bp AACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCCTCGATCAGAAATTTaGCAACTTCAATGTGCCCTT +
Preference number: 4 (lower is better)
Translates to: NTGLCHQMAVSIPKEAACPRSEI*QLQCAL
Trigger: AAGGGCACATTGAAGTTGTCAAATTTCTGATCGAGG...GCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR GCA 90 bp ATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTAAATGTGTCTTGGACCATGCGCTaGATCTTGCTCATGCAGTCC +
Preference number: 4 (lower is better)
Translates to: IPKEAACRSIFGGCGLNVSWTMR*ILLMQS
Trigger: GGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGA...CACATTTAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp ACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTACCAAGAGGCCACCGCTaGTGGACTCTTGGACCATGC +
Preference number: 4 (lower is better)
Translates to: TKYSVYKIAVSSSSVSWLPRGHR*WTLGPC
Trigger: GCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGG...TAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp GGCGTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATTGTGCACGTAGTCAGTaGCTAAGGTGCTCACGGAGA +
Preference number: 4 (lower is better)
Translates to: GVLILRKHWPVSPNGCVDCARSQ*LRCSRR
Trigger: TCTCCGTGAGCACCTTAGGCACTGACTACGTGCACA...ATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAACGCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR GCA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGGTGTGGCCCACAGAGTaGTTTGCCTCCAGTGGGCTC +
Preference number: 4 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWVWPTE*FASSGL
Trigger: GAGCCCACTGGAGGCAAAGCACTCTGTGGGCCACAC...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000134104.8
CDS-3UTR CCA 90 bp GTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCGCCGTGGTGAACTTGTaGATAGGGATACGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: VLILRKHWPVSPNGCVDPAVVNL*IGIRSC
Trigger: ACAGGAGCGTATCCCTATCCACAAGTTCACCACGGC...GGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CCA 90 bp ACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTCTGCTCACACACTTTTaGAAGAGCTCTCGGTCCAAG +
Preference number: 4 (lower is better)
Translates to: TLELYLEVSVASSAQVSILLTHF*KSSRSK
Trigger: CTTGGACCGAGAGCTCTTCCAAAAGTGTGTGAGCAG...AATGGATACCTGAGCAGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR CCA 90 bp GTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCCACTTTGCCTCCAGTaGGCTCTTTGGCATCCTCAA +
Preference number: 4 (lower is better)
Translates to: VLILRKHWPVSPNGCVDPPLCLQ*ALWHPQ
Trigger: TTGAGGATGCCAAAGAGCCCACTGGAGGCAAAGTGG...GGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CCA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGAAGGGGATCTTCGTGTaGCCCACAGAGTGCCGCTGC +
Preference number: 4 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWKGIFV*PTECRC
Trigger: GCAGCGGCACTCTGTGGGCCACACGAAGATCCCCTT...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000143827.8
CDS-3UTR CCA 90 bp GTGTCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTAGTCTCCTTCTCTGACTaGAATGTGGCATTGCTGAAC +
Preference number: 4 (lower is better)
Translates to: VSIPKEAACRSIFGGCGLVSFSD*NVALLN
Trigger: GTTCAGCAATGCCACATTCCAGTCAGAGAAGGAGAC...TAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CCA 90 bp GTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGAAGTTGATGCCCCTTTaGCTGTTCCCCAGCTTGTCT +
Preference number: 4 (lower is better)
Translates to: VSVASSAQVSIEAFLCAVKLMPL*LFPSLS
Trigger: AGACAAGCTGGGGAACAGCCAAAGGGGCATCAACTT...CACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGCTAGCTACAGAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CCA 90 bp TCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAAAGAGAGACACCAACTaGCAGAAGTTGATGCCCCTT +
Preference number: 4 (lower is better)
Translates to: SENTGLCHQMAVSIPKEAKRDTN*QKLMPL
Trigger: AAGGGGCATCAACTTCTGCCAGTTGGTGTCTCTCTT...TGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000132441.2
CDS-3UTR TCA 90 bp ATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTAAATGTGAGCACTTCTTCTCCTTaGGGTAATAGCCGATGGCGT +
Preference number: 4 (lower is better)
Translates to: IPKEAACRSIFGGCGLNVSTSSP*GNSRWR
Trigger: ACGCCATCGGCTATTACCTCAAGGAGAAGAAGTGCT...CACATTTAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR GCA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCCATGCGCTGCATCTTaGTCATGCAGTCCTGGAGCC +
Preference number: 4 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWPCAAS*SCSPGA
Trigger: GGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGG...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR GCA 90 bp GTAAAGACCCGGGCTACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTAAACTTCTTTCGGAATaGCTGAGTCAGGAGCACAAT +
Preference number: 4 (lower is better)
Translates to: VKTRATLELYLEVSVASSKLLSE*LSQEHN
Trigger: ATTGTGCTCCTGACTCAGGCATTCCGAAAGAAGTTT...AGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGTAGCCCGGGTCTTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR GCA 90 bp TCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTAAATTACATGCCACAGGAATaGATGAGGCTGAGGGTGTTG +
Preference number: 4 (lower is better)
Translates to: SIPKEAACRSIFGGCGLNYMPQE*MRLRVL
Trigger: CAACACCCTCAGCCTCATGCATTCCTGTGGCATGTA...ATTTAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CCA 90 bp ACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTTCTGCTCCATATCCATaGCCGACAATGCAAACCTTC +
Preference number: 4 (lower is better)
Translates to: TLELYLEVSVASSAQVSISAPYP*PTMQTF
Trigger: GAAGGTTTGCATTGTCGGCCATGGATATGGAGCAGA...AATGGATACCTGAGCAGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CCA 90 bp TCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTAAATTCTCTAGATTCTCTTTaGACAGGGTCTCAGCTGCCG +
Preference number: 4 (lower is better)
Translates to: SIPKEAACRSIFGGCGLNSLDSL*TGSQLP
Trigger: CGGCAGCTGAGACCCTGTCCAAAGAGAATCTAGAGA...ATTTAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CCA 90 bp CGTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCTCTCTAGATTCTCTTTaGACAGGGTCTCAGCTGCCG +
Preference number: 4 (lower is better)
Translates to: RFDSQKTLACVTKWLCRSSLDSL*TGSQLP
Trigger: CGGCAGCTGAGACCCTGTCCAAAGAGAATCTAGAGA...GGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR GCA 90 bp GGGCGTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGAGGAGCACAATGTTGCTaGTCACACACTTTTGGAAGA +
Preference number: 4 (lower is better)
Translates to: GRFDSQKTLACVTKWLCRGAQCC*SHTFGR
Trigger: TCTTCCAAAAGTGTGTGAGCAGCAACATTGTGCTCC...TCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAACGCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR GCA 90 bp TCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGCACGGAGCACAATGTTGCTaGTCACACACTTTTGGAAGA +
Preference number: 4 (lower is better)
Translates to: SVASSAQVSIEAFLCAVHGAQCC*SHTFGR
Trigger: TCTTCCAAAAGTGTGTGAGCAGCAACATTGTGCTCC...GTGCACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGCTAGCTACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR GCA 90 bp GTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGTCAGGAGCACAATGTTaGTGCTCACACACTTTTGGA +
Preference number: 4 (lower is better)
Translates to: VSVASSAQVSIEAFLCAVSGAQC*CSHTFG
Trigger: TCCAAAAGTGTGTGAGCAGCAACATTGTGCTCCTGA...CACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGCTAGCTACAGAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR GCA 90 bp AACACAAAATCGAACTTCTCTGCTTTGTTACAGTCCATCTTGATCAGGGAGCTGGGCTTGACACAGGACTaGAGGCAGAAGGGGATCTTC +
Preference number: 4 (lower is better)
Translates to: NTKSNFSALLQSILIRELGLTQD*RQKGIF
Trigger: GAAGATCCCCTTCTGCCTGCAGTCCTGTGTCAAGCC...CAGCTCCCTGATCAAGATGGACTGTAACAAAGCAGAGAAGTTCGATTTTGTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
CDS-3UTR CCA 90 bp TCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTAAATAATATGCGATCCACATaGCCCGTGAACTCCTCAAAG +
Preference number: 4 (lower is better)
Translates to: SIPKEAACRSIFGGCGLNNMRST*PVNSSK
Trigger: CTTTGAGGAGTTCACGGGCCATGTGGATCGCATATT...ATTTAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR CCA 90 bp ACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTTTGACCATGGGGTTATaGGGAATTCCTTCCTCATTG +
Preference number: 4 (lower is better)
Translates to: TLELYLEVSVASSAQVSILTMGL*GIPSSL
Trigger: CAATGAGGAAGGAATTCCCCATAACCCCATGGTCAA...AATGGATACCTGAGCAGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR TCA 90 bp GTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGCCTCAAAGTCAGGAATaGCAAACTTCTTTCGGAATG +
Preference number: 4 (lower is better)
Translates to: VSVASSAQVSIEAFLCAVPQSQE*QTSFGM
Trigger: CATTCCGAAAGAAGTTTGTCATTCCTGACTTTGAGG...CACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGCTAGCTACAGAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR GCA 90 bp CAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCAAAAGGATTCACTTTaGAAGCCTCGATCAGAAATT +
Preference number: 4 (lower is better)
Translates to: QKTLACVTKWLCRSPRKQQKDSL*KPRSEI
Trigger: AATTTCTGATCGAGGCTTGCAAAGTGAATCCTTTTG...CTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
3UTR CAA 72 bp TTGAGTCTCAGAGAGCAAGTAGGAGTCATGGTAATCTaGAAGCAGTTTGACCACCTCCAGGTGGTTGAACTG +
Preference number: 4 (lower is better)
Translates to: LSLREQVGVMVI*KQFDHLQVVEL
Trigger: CAGTTCAACCACCTGGAGGTGGTCAAACTGCTTCAAGATTACCATGACTCCTACTTGCTCTCTGAGACTCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR TCA 90 bp CGTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCTCGATCAGAAATTTaGCAACTTCAATGTGCCCTT +
Preference number: 4 (lower is better)
Translates to: RFDSQKTLACVTKWLCRSPRSEI*QLQCAL
Trigger: AAGGGCACATTGAAGTTGTCAAATTTCTGATCGAGG...GGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR GCA 90 bp GGCGTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATAAACTTCTTTCGGAATaGCTGAGTCAGGAGCACAAT +
Preference number: 4 (lower is better)
Translates to: GVLILRKHWPVSPNGCVDKLLSE*LSQEHN
Trigger: ATTGTGCTCCTGACTCAGGCATTCCGAAAGAAGTTT...ATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAACGCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR GCA 90 bp CTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGCAAAAGGATTCACTTTaGAAGCCTCGATCAGAAATT +
Preference number: 4 (lower is better)
Translates to: LELYLEVSVASSAQVSIEQKDSL*KPRSEI
Trigger: AATTTCTGATCGAGGCTTGCAAAGTGAATCCTTTTG...CTCAATGGATACCTGAGCAGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
3UTR CAA 72 bp ACAAAAGGATTCACTTTGCAAGCCTCGATCAGAAATTaGACAACTTCAATGTGCCCTTCAGCTGCAGCGACA +
Preference number: 4 (lower is better)
Translates to: TKGFTLQASIRN*TTSMCPSAAAT
Trigger: TGTCGCTGCAGCTGAAGGGCACATTGAAGTTGTCAAATTTCTGATCGAGGCTTGCAAAGTGAATCCTTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
3UTR CAA 72 bp GCATTGCTGAACCCCATGAATTCGTTCCCAGCCATCTaGTTCAGATACTGTAACACAAAATCGAACTTCTCT +
Preference number: 4 (lower is better)
Translates to: ALLNPMNSFPAI*FRYCNTKSNFS
Trigger: AGAGAAGTTCGATTTTGTGTTACAGTATCTGAACAAGATGGCTGGGAACGAATTCATGGGGTTCAGCAATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR TCA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCCTCAAAGTCAGGAATaGCAAACTTCTTTCGGAATG +
Preference number: 4 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWPQSQE*QTSFGM
Trigger: CATTCCGAAAGAAGTTTGTCATTCCTGACTTTGAGG...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS TCA 90 bp CTCGAAGACCGACCTGCCCAAACGCCCTCCCGGGCGGACAGCACCTaGCCGCCCGAGCGCGGCGGACAGCACCTGACCGCCCGAGCGCGG +
Preference number: 5 (lower is better)
Translates to: LEDRPAQTPSRADST*PPERGGQHLTARAR
Trigger: CCGCGCTCGGGCGGTCAGGTGCTGTCCGCCGCGCTCGGGCGGTCAGGTGCTGTCCGCCCGGGAGGGCGTTTGGGCAGGTCGGTCTTCGAG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123291.2
CDS GCA 90 bp CGTCATGATCCGAGTGCTGCGGCTGGTGGCTGTGCGGCGTCCCCCTaGCCTGCGCTGCGGCCTCACCGAGGTAGTACCGGACGCCCCTGC +
Preference number: 5 (lower is better)
Translates to: RHDPSAAAGGCAASP*PALRPHRGSTGRPC
Trigger: GCAGGGGCGTCCGGTACTACCTCGGTGAGGCCGCAGCGCAGGGCAGGGGGACGCCGCACAGCCACCAGCCGCAGCACTCGGATCATGACG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS GCA 90 bp CACATTGATCCGAGTGCTGCGGCTGGTGGCTGTGCGGCGTCCCCCTaGCCTGCGCTGCGGCCTCACCGAGGTAGTACCGGACGCCCCTGC +
Preference number: 5 (lower is better)
Translates to: HIDPSAAAGGCAASP*PALRPHRGSTGRPC
Trigger: GCAGGGGCGTCCGGTACTACCTCGGTGAGGCCGCAGCGCAGGGCAGGGGGACGCCGCACAGCCACCAGCCGCAGCACTCGGATCAATGTG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000123291.2
CDS TCA 90 bp AGCAGGTCACCAAGTCGAGGCAGCATGCCGCTGTGTGAGGCGTCATaGTCCGAGTGCTGCGGCTGGTGGCTGTGCGGCGTCCCCCTGCCC +
Preference number: 5 (lower is better)
Translates to: SRSPSRGSMPLCEAS*SECCGWWLCGVPLP
Trigger: GGGCAGGGGGACGCCGCACAGCCACCAGCCGCAGCACTCGGATCATGACGCCTCACACAGCGGCATGCTGCCTCGACTTGGTGACCTGCT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS GCA 90 bp CTGTGTGAGGCGTCACTTGGACAGGCATCATCTCGAAGACCGACCTaGCCAAACGCCCTCCCGGGCGGACAGCACCTGACCGCCCGAGCG +
Preference number: 5 (lower is better)
Translates to: LCEASLGQASSRRPT*PNALPGGQHLTARA
Trigger: CGCTCGGGCGGTCAGGTGCTGTCCGCCCGGGAGGGCGTTTGGGCAGGTCGGTCTTCGAGATGATGCCTGTCCAAGTGACGCCTCACACAG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123291.2
CDS GCA 90 bp CCAAGAGGCCACCGCTGCTGGACTCTTGGACCATGCGCTGCATCTTaGTCATGCAGTCCTGGAGCCGTGGGTCTGACGTCTGCAGTCCAG +
Preference number: 5 (lower is better)
Translates to: PRGHRCWTLGPCAAS*SCSPGAVGLTSAVQ
Trigger: CTGGACTGCAGACGTCAGACCCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS GCA 90 bp TCTCGGTCCAAGAGGCCACCGCTGCTGGACTCTTGGACCATGCGCTaGATCTTGCTCATGCAGTCCTGGAGCCGTGGGTCTGACGTCTGC +
Preference number: 5 (lower is better)
Translates to: SRSKRPPLLDSWTMR*ILLMQSWSRGSDVC
Trigger: GCAGACGTCAGACCCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS GCA 90 bp AGAGCTCTCGGTCCAAGAGGCCACCGCTGCTGGACTCTTGGACCATaGGCTGCATCTTGCTCATGCAGTCCTGGAGCCGTGGGTCTGACG +
Preference number: 5 (lower is better)
Translates to: RALGPRGHRCWTLGP*AASCSCSPGAVGLT
Trigger: CGTCAGACCCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGAGCTCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS TCA 90 bp AGTGTAGAAAAGCAGGTCACCAAGTCGAGGCAGCATGCCGCTGTGTaGGGCGTCATGATCCGAGTGCTGCGGCTGGTGGCTGTGCGGCGT +
Preference number: 5 (lower is better)
Translates to: SVEKQVTKSRQHAAV*GVMIRVLRLVAVRR
Trigger: ACGCCGCACAGCCACCAGCCGCAGCACTCGGATCATGACGCCTCACACAGCGGCATGCTGCCTCGACTTGGTGACCTGCTTTTCTACACT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS CCA 90 bp CTGCTGGACTCTTGGACCATGCGCTGCATCTTGCTCATGCAGTCCTaGAGCCGTGGGTCTGACGTCTGCAGTCCAGTGGCCTTCAGAGCC +
Preference number: 5 (lower is better)
Translates to: LLDSWTMRCILLMQS*SRGSDVCSPVAFRA
Trigger: GGCTCTGAAGGCCACTGGACTGCAGACGTCAGACCCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS TCA 90 bp GACCATGCGCTGCATCTTGCTCATGCAGTCCTGGAGCCGTGGGTCTaGCGTCTGCAGTCCAGTGGCCTTCAGAGCCGTGGTGAACTTGTG +
Preference number: 5 (lower is better)
Translates to: DHALHLAHAVLEPWV*RLQSSGLQSRGELV
Trigger: CACAAGTTCACCACGGCTCTGAAGGCCACTGGACTGCAGACGTCAGACCCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS GCA 90 bp CGCTGCATCTTGCTCATGCAGTCCTGGAGCCGTGGGTCTGACGTCTaGAGTCCAGTGGCCTTCAGAGCCGTGGTGAACTTGTGGATAGGG +
Preference number: 5 (lower is better)
Translates to: RCILLMQSWSRGSDV*SPVAFRAVVNLWIG
Trigger: CCCTATCCACAAGTTCACCACGGCTCTGAAGGCCACTGGACTGCAGACGTCAGACCCACGGCTCCAGGACTGCATGAGCAAGATGCAGCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS CCA 90 bp TTTTGGAAGAGCTCTCGGTCCAAGAGGCCACCGCTGCTGGACTCTTaGACCATGCGCTGCATCTTGCTCATGCAGTCCTGGAGCCGTGGG +
Preference number: 5 (lower is better)
Translates to: FWKSSRSKRPPLLDS*TMRCILLMQSWSRG
Trigger: CCCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGAGCTCTTCCAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS TCA 90 bp CTGCCCATCCACAGTGCACAGGGAGACGCCCCAAAGGTCTGGGTTTaGTTTGGCCAGGTGCGGGATGTAGGCTGCCACTTTTGGAAGAGC +
Preference number: 5 (lower is better)
Translates to: LPIHSAQGDAPKVWV*FGQVRDVGCHFWKS
Trigger: GCTCTTCCAAAAGTGGCAGCCTACATCCCGCACCTGGCCAAATCAAACCCAGACCTTTGGGGCGTCTCCCTGTGCACTGTGGATGGGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143827.8
CDS CCA 90 bp GCTGCCACTTTTGGAAGAGCTCTCGGTCCAAGAGGCCACCGCTGCTaGACTCTTGGACCATGCGCTGCATCTTGCTCATGCAGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: AATFGRALGPRGHRC*TLGPCAASCSCSPG
Trigger: TCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGAGCTCTTCCAAAAGTGGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143827.8
CDS-3UTR CAA 90 bp CACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCGGAAGTTGATGCCCCTTaGGCTGTTCCCCAGCTTGTC +
Preference number: 5 (lower is better)
Translates to: HWPVSPNGCVDPQGSSLPEVDAP*AVPQLV
Trigger: GACAAGCTGGGGAACAGCCAAAGGGGCATCAACTTC...CGGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CAA 90 bp AATGTGTGGCCAGCTCATGCTTTTTCTGAAGCAGGGACTGCCCCTGGGCCTGTGACCACCTCCAGGTGGTaGAACTGCACAGCATCGTCC +
Preference number: 5 (lower is better)
Translates to: NVWPAHAFSEAGTAPGPVTTSRW*NCTASS
Trigger: GGACGATGCTGTGCAGTTCAACCACCTGGAGGTGGT...CACAGGCCCAGGGGCAGTCCCTGCTTCAGAAAAAGCATGAGCTGGCCACACATT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS GCA 90 bp TGCTCACACACTTTTGGAAGAGCTCTCGGTCCAAGAGGCCACCGCTaGTGGACTCTTGGACCATGCGCTGCATCTTGCTCATGCAGTCCT +
Preference number: 5 (lower is better)
Translates to: CSHTFGRALGPRGHR*WTLGPCAASCSCSP
Trigger: AGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGAGCTCTTCCAAAAGTGTGTGAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS CCA 90 bp TCACACACTTTTGGAAGAGCTCTCGGTCCAAGAGGCCACCGCTGCTaGACTCTTGGACCATGCGCTGCATCTTGCTCATGCAGTCCTGGA +
Preference number: 5 (lower is better)
Translates to: SHTFGRALGPRGHRC*TLGPCAASCSCSPG
Trigger: TCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGAGCTCTTCCAAAAGTGTGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR CAA 90 bp GCTGTGTCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGACCATGCGCTGCATCTaGCTCATGCAGTCCTGGAGC +
Preference number: 5 (lower is better)
Translates to: AVSIPKEAACRSIFGGCGTMRCI*LMQSWS
Trigger: GCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGT...CCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACACAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CAA 90 bp GCTGTGTCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGAGAGCCGTGGTGAACTaGTGGATAGGGATACGCTCC +
Preference number: 5 (lower is better)
Translates to: AVSIPKEAACRSIFGGCGRAVVN*WIGIRS
Trigger: GGAGCGTATCCCTATCCACAAGTTCACCACGGCTCT...CCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACACAGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CAA 90 bp CCCAGCTTGTCTAACGGCGGCGACAGACACATCATGCCCATGACATTGGGTACAAGAGCCGTGGTGAACTaGTGGATAGGGATACGCTCC +
Preference number: 5 (lower is better)
Translates to: PSLSNGGDRHIMPMTLGTRAVVN*WIGIRS
Trigger: GGAGCGTATCCCTATCCACAAGTTCACCACGGCTCT...TGTACCCAATGTCATGGGCATGATGTGTCTGTCGCCGCCGTTAGACAAGCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CAA 90 bp CACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCGGTCAGGAGCACAATGTaGCTGCTCACACACTTTTGG +
Preference number: 5 (lower is better)
Translates to: HWPVSPNGCVDPQGSSLPVRSTM*LLTHFW
Trigger: CCAAAAGTGTGTGAGCAGCAACATTGTGCTCCTGAC...CGGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR CAA 90 bp GTAAAGACCCGGGCTACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTCCCAAAGGTCTGGGTTaGATTTGGCCAGGTGCGGGA +
Preference number: 5 (lower is better)
Translates to: VKTRATLELYLEVSVASSPKGLG*IWPGAG
Trigger: TCCCGCACCTGGCCAAATCAAACCCAGACCTTTGGG...AGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGTAGCCCGGGTCTTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000143827.8
CDS-3UTR CAA 90 bp CTTCAGAGAGGAAAAGGGGACCTGGGTAAAGACCCGGGCTACTCTCGAGCTGTAGAAGTTGATGCCCCTTaGGCTGTTCCCCAGCTTGTC +
Preference number: 5 (lower is better)
Translates to: LQRGKGDLGKDPGYSRAVEVDAP*AVPQLV
Trigger: GACAAGCTGGGGAACAGCCAAAGGGGCATCAACTTC...TACAGCTCGAGAGTAGCCCGGGTCTTTACCCAGGTCCCCTTTTCCTCTCTGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CAA 90 bp GTAAAGACCCGGGCTACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTACCACCTCCAGGTGGTaGAACTGCACAGCATCGTCC +
Preference number: 5 (lower is better)
Translates to: VKTRATLELYLEVSVASSTTSRW*NCTASS
Trigger: GGACGATGCTGTGCAGTTCAACCACCTGGAGGTGGT...AGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGTAGCCCGGGTCTTTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS GCA 90 bp CAGAGCCGTGGTGAACTTGTGGATAGGGATACGCTCCTGTCCCTCTaGAATAGTGTAGAAAAGCAGGTCACCAAGTCGAGGCAGCATGCC +
Preference number: 5 (lower is better)
Translates to: QSRGELVDRDTLLSL*NSVEKQVTKSRQHA
Trigger: GGCATGCTGCCTCGACTTGGTGACCTGCTTTTCTACACTATTGCAGAGGGACAGGAGCGTATCCCTATCCACAAGTTCACCACGGCTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CAA 90 bp TCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCATCGTCCAGGGGAATGTaGCCCCACCTGTCCTTGACA +
Preference number: 5 (lower is better)
Translates to: SENTGLCHQMAVSIPKEASSRGM*PHLSLT
Trigger: TGTCAAGGACAGGTGGGGCAACATTCCCCTGGACGA...TGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CAA 90 bp GTAAAGACCCGGGCTACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTGCTGCTCACACACTTTaGGAAGAGCTCTCGGTCCAA +
Preference number: 5 (lower is better)
Translates to: VKTRATLELYLEVSVASSAAHTL*EELSVQ
Trigger: TTGGACCGAGAGCTCTTCCAAAAGTGTGTGAGCAGC...AGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGTAGCCCGGGTCTTTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR CAA 90 bp TTCTCTGACTGGAATGTGGCATTGCTGAACCCCATGAATTCGTTCCCAGCCATCCCCAAAGGTCTGGGTTaGATTTGGCCAGGTGCGGGA +
Preference number: 5 (lower is better)
Translates to: FSDWNVALLNPMNSFPAIPKGLG*IWPGAG
Trigger: TCCCGCACCTGGCCAAATCAAACCCAGACCTTTGGG...GATGGCTGGGAACGAATTCATGGGGTTCAGCAATGCCACATTCCAGTCAGAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143827.8
CDS-3UTR CAA 90 bp TCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAAGACCACTGGGTTCCTaGCCCACAAACTTGTGCACG +
Preference number: 5 (lower is better)
Translates to: SENTGLCHQMAVSIPKEARPLGS*PTNLCT
Trigger: CGTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTCT...TGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CAA 90 bp ACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAATGAGGCTGAGGGTGTaGCGCACGGCCTCGGCGCTC +
Preference number: 5 (lower is better)
Translates to: TKYSVYKIAVSSSSVSWLMRLRV*RTASAL
Trigger: GAGCGCCGAGGCCGTGCGCAACACCCTCAGCCTCAT...TAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CAA 90 bp TCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGCTAAGATGGACACCTGACACAGCTGACTaGGCTGGCAGGCCCACATGG +
Preference number: 5 (lower is better)
Translates to: SVYKIAVSSSSVSWLRWTPDTAD*AGRPTW
Trigger: CCATGTGGGCCTGCCAGCCAAGTCAGCTGTGTCAGG...TGTCCATCTTAGCCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS CCA 90 bp TGGAAGTTAAAGAGAGACACCAACTGGCAGAAGTTGATGCCCCTTTaGCTGTTCCCCAGCTTGTCTAACGGCGGCGACAGACACATCATG +
Preference number: 5 (lower is better)
Translates to: WKLKRDTNWQKLMPL*LFPSLSNGGDRHIM
Trigger: CATGATGTGTCTGTCGCCGCCGTTAGACAAGCTGGGGAACAGCCAAAGGGGCATCAACTTCTGCCAGTTGGTGTCTCTCTTTAACTTCCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132441.2
CDS-3UTR CAA 90 bp CATATCCATGGCCGACAATGCAAACCTTCGAAGGGCCGAGACATCTCCACTATAAGAGCCGTGGTGAACTaGTGGATAGGGATACGCTCC +
Preference number: 5 (lower is better)
Translates to: HIHGRQCKPSKGRDISTIRAVVN*WIGIRS
Trigger: GGAGCGTATCCCTATCCACAAGTTCACCACGGCTCT...TATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATTGTCGGCCATGGATATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CAA 90 bp CACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCCAAGGAAGCAGCTTGCCGTCGAACTTCTCTGCTTaGTTACAGTCCATCTTGATC +
Preference number: 5 (lower is better)
Translates to: HWPVSPNGCVDPQGSSLPSNFSA*LQSILI
Trigger: GATCAAGATGGACTGTAACAAAGCAGAGAAGTTCGA...CGGCAAGCTGCTTCCTTGGGGATCGACACAGCCATTTGGTGACACAGGCCAGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CAA 90 bp CACTTTGCAAGCCTCGATCAGAAATTTGACAACTTCAATGTGCCCTTCAGCTGCGGCCCACAGAGTGCTTaGCCTCCAGTGGGCTCTTTG +
Preference number: 5 (lower is better)
Translates to: HFASLDQKFDNFNVPFSCGPQSA*PPVGSL
Trigger: CAAAGAGCCCACTGGAGGCAAAGCACTCTGTGGGCC...GCAGCTGAAGGGCACATTGAAGTTGTCAAATTTCTGATCGAGGCTTGCAAAGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000134104.8
CDS-3UTR CAA 90 bp GGAGAGTTTGTTATAGCGCAGACCACTGGGTTCCTTGCCCACAAACTTGTGCACTGTAGGCTGCCACTTTaGGAAGAGCTCTCGGTCCAA +
Preference number: 5 (lower is better)
Translates to: GEFVIAQTTGFLAHKLVHCRLPL*EELSVQ
Trigger: TTGGACCGAGAGCTCTTCCAAAAGTGGCAGCCTACA...GTGCACAAGTTTGTGGGCAAGGAACCCAGTGGTCTGCGCTATAACAAACTCTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143827.8
CDS-3UTR CAA 90 bp AATGCAAACCTTCGAAGGGCCGAGACATCTCCACTATATGCAGCAAATAGCAGGAGAGCCGTGGTGAACTaGTGGATAGGGATACGCTCC +
Preference number: 5 (lower is better)
Translates to: NANLRRAETSPLYAANSRRAVVN*WIGIRS
Trigger: GGAGCGTATCCCTATCCACAAGTTCACCACGGCTCT...CCTGCTATTTGCTGCATATAGTGGAGATGTCTCGGCCCTTCGAAGGTTTGCATT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS-3UTR CAA 90 bp CTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGGACTGGAATGTGGCATaGCTGAACCCCATGAATTCG +
Preference number: 5 (lower is better)
Translates to: LELYLEVSVASSAQVSIEDWNVA*LNPMNS
Trigger: CGAATTCATGGGGTTCAGCAATGCCACATTCCAGTC...CTCAATGGATACCTGAGCAGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CAA 90 bp GCTGTGTCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGGCCTCGATCAGAAATTaGACAACTTCAATGTGCCCT +
Preference number: 5 (lower is better)
Translates to: AVSIPKEAACRSIFGGCGASIRN*TTSMCP
Trigger: AGGGCACATTGAAGTTGTCAAATTTCTGATCGAGGC...CCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGACACAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CAA 90 bp TCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGCACAACTTCTGGCAGAAGTaGATGCCCCTTTGGCTGTTC +
Preference number: 5 (lower is better)
Translates to: SVASSAQVSIEAFLCAVHNFWQK*MPLWLF
Trigger: GAACAGCCAAAGGGGCATCAACTTCTGCCAGAAGTT...GTGCACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGCTAGCTACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CAA 90 bp GCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGCACTGAACTGATGGGAGTCATGGTAATCTaGAAGCAGTTTGACCACCTC +
Preference number: 5 (lower is better)
Translates to: ALLRYPLRLFSVLCTELMGVMVI*KQFDHL
Trigger: GAGGTGGTCAAACTGCTTCAAGATTACCATGACTCC...CATCAGTTCAGTGCACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CAA 90 bp GTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGGGAGTCATGGTAATCTaGAAGCAGTTTGACCACCTC +
Preference number: 5 (lower is better)
Translates to: VSVASSAQVSIEAFLCAVGVMVI*KQFDHL
Trigger: GAGGTGGTCAAACTGCTTCAAGATTACCATGACTCC...CACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGCTAGCTACAGAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CAA 90 bp CAAGTAGGAGTCATGGTAATCTTGAAGCAGTTTGACCACCTCCAGGTGGTTGAAGTCAGGAGCACAATGTaGCTGCTCACACACTTTTGG +
Preference number: 5 (lower is better)
Translates to: QVGVMVILKQFDHLQVVEVRSTM*LLTHFW
Trigger: CCAAAAGTGTGTGAGCAGCAACATTGTGCTCCTGAC...TTCAACCACCTGGAGGTGGTCAAACTGCTTCAAGATTACCATGACTCCTACTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134104.8
CDS-3UTR CAA 90 bp ACTCTCGAGCTGTATCTGGAGGTCTCTGTAGCTAGCTCTGCTCAGGTATCCATTTCGTTCCCAGCCATCTaGTTCAGATACTGTAACACA +
Preference number: 5 (lower is better)
Translates to: TLELYLEVSVASSAQVSISFPAI*FRYCNT
Trigger: TGTGTTACAGTATCTGAACAAGATGGCTGGGAACGA...AATGGATACCTGAGCAGAGCTAGCTACAGAGACCTCCAGATACAGCTCGAGAGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS-3UTR CAA 90 bp TCGATCCCCAAGGAAGCAGCTTGCCGTAGTATTTTTGGTGGCTGTGGGTTAAATTTGCCCCACCTGTCCTaGACAAAAGGATTCACTTTG +
Preference number: 5 (lower is better)
Translates to: SIPKEAACRSIFGGCGLNLPHLS*TKGFTL
Trigger: CAAAGTGAATCCTTTTGTCAAGGACAGGTGGGGCAA...ATTTAACCCACAGCCACCAAAAATACTACGGCAAGCTGCTTCCTTGGGGATCGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CAA 90 bp GTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATCCCTTGCCCCACCTGTCCTaGACAAAAGGATTCACTTTG +
Preference number: 5 (lower is better)
Translates to: VLILRKHWPVSPNGCVDPLPHLS*TKGFTL
Trigger: CAAAGTGAATCCTTTTGTCAAGGACAGGTGGGGCAA...GGGATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CAA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGGCTGCTCACACACTTTaGGAAGAGCTCTCGGTCCAA +
Preference number: 5 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWAAHTL*EELSVQ
Trigger: TTGGACCGAGAGCTCTTCCAAAAGTGTGTGAGCAGC...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
CDS-3UTR CAA 90 bp GGCGTTTTGATTCTCAGAAAACACTGGCCTGTGTCACCAAATGGCTGTGTCGATGCCTCGATCAGAAATTaGACAACTTCAATGTGCCCT +
Preference number: 5 (lower is better)
Translates to: GVLILRKHWPVSPNGCVDASIRN*TTSMCP
Trigger: AGGGCACATTGAAGTTGTCAAATTTCTGATCGAGGC...ATCGACACAGCCATTTGGTGACACAGGCCAGTGTTTTCTGAGAATCAAAACGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CAA 90 bp GCTCTGCTCAGGTATCCATTGAGGCTTTTCTCTGTGCTGTGCACTGAACTGATGACAAAAGGATTCACTTaGCAAGCCTCGATCAGAAAT +
Preference number: 5 (lower is better)
Translates to: ALLRYPLRLFSVLCTELMTKGFT*QASIRN
Trigger: ATTTCTGATCGAGGCTTGCAAAGTGAATCCTTTTGT...CATCAGTTCAGTGCACAGCACAGAGAAAAGCCTCAATGGATACCTGAGCAGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000044776.13
ENSMUST00000132441.2
CDS-3UTR CAA 90 bp AACACAAAATACTCTGTCTATAAAATTGCTGTCAGCAGTAGCAGCGTGTCCTGGACAAAAGGATTCACTTaGCAAGCCTCGATCAGAAAT +
Preference number: 5 (lower is better)
Translates to: NTKYSVYKIAVSSSSVSWTKGFT*QASIRN
Trigger: ATTTCTGATCGAGGCTTGCAAAGTGAATCCTTTTGT...CCAGGACACGCTGCTACTGCTGACAGCAATTTTATAGACAGAGTATTTTGTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044776.13
CDS TCA 72 bp CGACCTGCCCAAACGCCCTCCCGGGCGGACAGCACCTaGCCGCCCGAGCGCGGCGGACAGCACCTGACCGCC +
Preference number: 6 (lower is better)
Translates to: RPAQTPSRADST*PPERGGQHLTA
Trigger: GGCGGTCAGGTGCTGTCCGCCGCGCTCGGGCGGTCAGGTGCTGTCCGCCCGGGAGGGCGTTTGGGCAGGTCG
76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000123291.2
CDS GCA 72 bp CGGCTGGTGGCTGTGCGGCGTCCCCCTGCCCTGCGCTaGGGCCTCACCGAGGTAGTACCGGACGCCCCTGCC +
Preference number: 6 (lower is better)
Translates to: RLVAVRRPPALR*GLTEVVPDAPA
Trigger: GGCAGGGGCGTCCGGTACTACCTCGGTGAGGCCGCAGCGCAGGGCAGGGGGACGCCGCACAGCCACCAGCCG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000044776.13
ENSMUST00000123291.2
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS GCA 72 bp GGCTCGGATGACCCCAGCCTCCCCGCCGACCGTGGCTaGCCGCGCGGCTCAGCGCGTTCTGCAGAGCCCTCA +
Preference number: 6 (lower is better)
Translates to: GSDDPSLPADRG*PRGSARSAEPS
Trigger: TGAGGGCTCTGCAGAACGCGCTGAGCCGCGCGGGCAGCCACGGTCGGCGGGGAGGCTGGGGTCATCCGAGCC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000123291.2
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS TCA 72 bp ACAGCACCTGACCGCCCGAGCGCGGCGGACAGCACCTaGCCGCCCGAGCGCGGCGGACCCAAAGCCCCACAT +
Preference number: 6 (lower is better)
Translates to: TAPDRPSAADST*PPERGGPKAPH
Trigger: ATGTGGGGCTTTGGGTCCGCCGCGCTCGGGCGGTCAGGTGCTGTCCGCCGCGCTCGGGCGGTCAGGTGCTGT
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000123291.2
CDS GCA 72 bp CCGAGTGCTGCGGCTGGTGGCTGTGCGGCGTCCCCCTaGCCTGCGCTGCGGCCTCACCGAGGTAGTACCGGA +
Preference number: 6 (lower is better)
Translates to: PSAAAGGCAASP*PALRPHRGSTG
Trigger: TCCGGTACTACCTCGGTGAGGCCGCAGCGCAGGGCAGGGGGACGCCGCACAGCCACCAGCCGCAGCACTCGG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000044776.13
ENSMUST00000123291.2
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS TCA 72 bp CCAAGTCGAGGCAGCATGCCGCTGTGTGAGGCGTCATaGTCCGAGTGCTGCGGCTGGTGGCTGTGCGGCGTC +
Preference number: 6 (lower is better)
Translates to: PSRGSMPLCEAS*SECCGWWLCGV
Trigger: GACGCCGCACAGCCACCAGCCGCAGCACTCGGATCATGACGCCTCACACAGCGGCATGCTGCCTCGACTTGG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS TCA 72 bp AAGCAGGTCACCAAGTCGAGGCAGCATGCCGCTGTGTaGGGCGTCATGATCCGAGTGCTGCGGCTGGTGGCT +
Preference number: 6 (lower is better)
Translates to: KQVTKSRQHAAV*GVMIRVLRLVA
Trigger: AGCCACCAGCCGCAGCACTCGGATCATGACGCCTCACACAGCGGCATGCTGCCTCGACTTGGTGACCTGCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS GCA 72 bp GGTCCAAGAGGCCACCGCTGCTGGACTCTTGGACCATaGGCTGCATCTTGCTCATGCAGTCCTGGAGCCGTG +
Preference number: 6 (lower is better)
Translates to: GPRGHRCWTLGP*AASCSCSPGAV
Trigger: CACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACC
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS CAA 72 bp CCACCGCTGCTGGACTCTTGGACCATGCGCTGCATCTaGCTCATGCAGTCCTGGAGCCGTGGGTCTGACGTC +
Preference number: 6 (lower is better)
Translates to: PPLLDSWTMRCI*LMQSWSRGSDV
Trigger: GACGTCAGACCCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS CAA 90 bp TCCAAGAGGCCACCGCTGCTGGACTCTTGGACCATGCGCTGCATCTaGCTCATGCAGTCCTGGAGCCGTGGGTCTGACGTCTGCAGTCCA +
Preference number: 6 (lower is better)
Translates to: SKRPPLLDSWTMRCI*LMQSWSRGSDVCSP
Trigger: TGGACTGCAGACGTCAGACCCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS TCA 72 bp CTGCATCTTGCTCATGCAGTCCTGGAGCCGTGGGTCTaGCGTCTGCAGTCCAGTGGCCTTCAGAGCCGTGGT +
Preference number: 6 (lower is better)
Translates to: LHLAHAVLEPWV*RLQSSGLQSRG
Trigger: ACCACGGCTCTGAAGGCCACTGGACTGCAGACGTCAGACCCACGGCTCCAGGACTGCATGAGCAAGATGCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS GCA 72 bp AAGAGGCCACCGCTGCTGGACTCTTGGACCATGCGCTaGATCTTGCTCATGCAGTCCTGGAGCCGTGGGTCT +
Preference number: 6 (lower is better)
Translates to: KRPPLLDSWTMR*ILLMQSWSRGS
Trigger: AGACCCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS CCA 72 bp AGCTCTCGGTCCAAGAGGCCACCGCTGCTGGACTCTTaGACCATGCGCTGCATCTTGCTCATGCAGTCCTGG +
Preference number: 6 (lower is better)
Translates to: SSRSKRPPLLDS*TMRCILLMQSW
Trigger: CCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGAGCT
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS CAA 72 bp GAGCTCTCGGTCCAAGAGGCCACCGCTGCTGGACTCTaGGACCATGCGCTGCATCTTGCTCATGCAGTCCTG +
Preference number: 6 (lower is better)
Translates to: ELSVQEATAAGL*DHALHLAHAVL
Trigger: CAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGAGCTC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS CAA 90 bp CTTTTGGAAGAGCTCTCGGTCCAAGAGGCCACCGCTGCTGGACTCTaGGACCATGCGCTGCATCTTGCTCATGCAGTCCTGGAGCCGTGG +
Preference number: 6 (lower is better)
Translates to: LLEELSVQEATAAGL*DHALHLAHAVLEPW
Trigger: CCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGAGCTCTTCCAAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
CDS CAA 90 bp GTTTTGGAAGAGCTCTCGGTCCAAGAGGCCACCGCTGCTGGACTCTaGGACCATGCGCTGCATCTTGCTCATGCAGTCCTGGAGCCGTGG +
Preference number: 6 (lower is better)
Translates to: VLEELSVQEATAAGL*DHALHLAHAVLEPW
Trigger: CCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGAGCTCTTCCAAAAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
CDS GCA 72 bp TTGCTCATGCAGTCCTGGAGCCGTGGGTCTGACGTCTaGAGTCCAGTGGCCTTCAGAGCCGTGGTGAACTTG +
Preference number: 6 (lower is better)
Translates to: LLMQSWSRGSDV*SPVAFRAVVNL
Trigger: CAAGTTCACCACGGCTCTGAAGGCCACTGGACTGCAGACGTCAGACCCACGGCTCCAGGACTGCATGAGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS GCA 72 bp TGCTGGACTCTTGGACCATGCGCTGCATCTTGCTCATaGAGTCCTGGAGCCGTGGGTCTGACGTCTGCAGTC +
Preference number: 6 (lower is better)
Translates to: CWTLGPCAASCS*SPGAVGLTSAV
Trigger: GACTGCAGACGTCAGACCCACGGCTCCAGGACTGCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS CAA 90 bp GCTGCCCATCCACAGTGCACAGGGAGACGCCCCAAAGGTCTGGGTTaGATTTGGCCAGGTGCGGGATGTAGGCTGCCACTTTTGGAAGAG +
Preference number: 6 (lower is better)
Translates to: AAHPQCTGRRPKGLG*IWPGAGCRLPLLEE
Trigger: CTCTTCCAAAAGTGGCAGCCTACATCCCGCACCTGGCCAAATCAAACCCAGACCTTTGGGGCGTCTCCCTGTGCACTGTGGATGGGCAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143827.8
CDS CCA 72 bp TTTGGAAGAGCTCTCGGTCCAAGAGGCCACCGCTGCTaGACTCTTGGACCATGCGCTGCATCTTGCTCATGC +
Preference number: 6 (lower is better)
Translates to: FGRALGPRGHRC*TLGPCAASCSC
Trigger: GCATGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGAGCTCTTCCAAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS GCA 72 bp AGTTTTGGAAGAGCTCTCGGTCCAAGAGGCCACCGCTaGTGGACTCTTGGACCATGCGCTGCATCTTGCTCA +
Preference number: 6 (lower is better)
Translates to: SFGRALGPRGHR*WTLGPCAASCS
Trigger: TGAGCAAGATGCAGCGCATGGTCCAAGAGTCCAGCAGCGGTGGCCTCTTGGACCGAGAGCTCTTCCAAAACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000159440.8
CDS GCA 72 bp GCAGAAGGGGATCTTCGTGTGGCCCACAGAGTGCTTTaGCTCCAGTGGGCTCTTTGGCATCCTCAAATATGC +
Preference number: 6 (lower is better)
Translates to: AEGDLRVAHRVL*LQWALWHPQIC
Trigger: GCATATTTGAGGATGCCAAAGAGCCCACTGGAGGCAAAGCACTCTGTGGGCCACACGAAGATCCCCTTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000134104.8
CDS CCA 72 bp TGCAGTCCAGTGGCCTTCAGAGCCGTGGTGAACTTGTaGATAGGGATACGCTCCTGTCCCTCTGCAATAGTG +
Preference number: 6 (lower is better)
Translates to: CSPVAFRAVVNL*IGIRSCPSAIV
Trigger: CACTATTGCAGAGGGACAGGAGCGTATCCCTATCCACAAGTTCACCACGGCTCTGAAGGCCACTGGACTGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044776.13
ENSMUST00000134104.8
ENSMUST00000143827.8
ENSMUST00000159440.8
CDS CCA 72 bp AAGAGAGACACCAACTGGCAGAAGTTGATGCCCCTTTaGCTGTTCCCCAGCTTGTCTAACGGCGGCGACAGA +
Preference number: 6 (lower is better)
Translates to: KRDTNWQKLMPL*LFPSLSNGGDR
Trigger: TCTGTCGCCGCCGTTAGACAAGCTGGGGAACAGCCAAAGGGGCATCAACTTCTGCCAGTTGGTGTCTCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000132441.2