RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GLRX3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000031068

Ensembl transcript IDs: ENSMUST00000064404.8, ENSMUST00000211496.2, ENSMUST00000211769.2

Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGAGGGCACTATCCTGCCTGGAGGAGGAGCTGCCCCAACATCTGCTaGTTACACCCTCAACACACTGAGCAAGGTGGAGAGCAGTGGGGT +
Preference number: 1 (lower is better)
Translates to: RGHYPAWRRSCPNIC*LHPQHTEQGGEQWG
Trigger: ACCCCACTGCTCTCCACCTTGCTCAGTGTGTTGAGGGTGTAACCAGCAGATGTTGGGGCAGCTCCTCCTCCAGGCAGGATAGTGCCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR TCA 90 bp TTGGCGGGGTATGTCTCCACTCAAGAGGCAGAGGTAGGCAATCTCTaGGTTAGAAGCCAGTTTGGACTACAGAAGGAGTTCCAGGACAGC +
Preference number: 1 (lower is better)
Translates to: LAGYVSTQEAEVGNL*VRSQFGLQKEFQDS
Trigger: GCTGTCCTGGAACTCCTTCTGTAGTCCAAACTGGCTTCTAACTCAGAGATTGCCTACCTCTGCCTCTTGAGTGGAGACATACCCCGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CCA 90 bp GCACTCTGCTGCGTCACAGATTTACAGCTAAGCTATGGTGGGAAGTaGGTGAACTCTACGGAGGAAGAATTCTTCCCTCTGAGACCCCTG +
Preference number: 1 (lower is better)
Translates to: ALCCVTDLQLSYGGK*VNSTEEEFFPLRPL
Trigger: CAGGGGTCTCAGAGGGAAGAATTCTTCCTCCGTAGAGTTCACCCACTTCCCACCATAGCTTAGCTGTAAATCTGTGACGCAGCAGAGTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CCA 90 bp GGAATCATACAGTCATACAGTTCCCAAAAGGTGTCACCGACTTCCTaGCCTCCTAAGACCCTTTATCTGGCTCAGGCATGGCCCGTGAAT +
Preference number: 1 (lower is better)
Translates to: GIIQSYSSQKVSPTS*PPKTLYLAQAWPVN
Trigger: ATTCACGGGCCATGCCTGAGCCAGATAAAGGGTCTTAGGAGGCCAGGAAGTCGGTGACACCTTTTGGGAACTGTATGACTGTATGATTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR TCA 90 bp CAACACACTGAGCAAGGTGGAGAGCAGTGGGGTAGAGAAGGGTCATaGAAGCTGCAGTTTACAGCAACCAACACAGCTAATAAACACAGT +
Preference number: 1 (lower is better)
Translates to: QHTEQGGEQWGREGS*KLQFTATNTANKHS
Trigger: ACTGTGTTTATTAGCTGTGTTGGTTGCTGTAAACTGCAGCTTTCATGACCCTTCTCTACCCCACTGCTCTCCACCTTGCTCAGTGTGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CCA 90 bp AAGACTGAAGGGTGCTTCCCCTTTGGTCGCTACTGCTCCCTCTTCTaGATATTGGTACAACATCTGGCTTTCTGCAGGATAAACTTTTGG +
Preference number: 1 (lower is better)
Translates to: KTEGCFPFGRYCSLF*ILVQHLAFCRINFW
Trigger: CCAAAAGTTTATCCTGCAGAAAGCCAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCACCCTTCAGTCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR TCA 90 bp TGTTCACAATGTAGGAGCAGCAGCACCAACTTGCAGCATGTGTTCTaGACAGGAATCATACAGTCATACAGTTCCCAAAAGGTGTCACCG +
Preference number: 1 (lower is better)
Translates to: CSQCRSSSTNLQHVF*TGIIQSYSSQKVSP
Trigger: CGGTGACACCTTTTGGGAACTGTATGACTGTATGATTCCTGTTCAGAACACATGCTGCAAGTTGGTGCTGCTGCTCCTACATTGTGAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR TCA 90 bp GAAGCCAATCAGAATTACCCTATGGAATGTGTACTAATGAACAGATaGAAAGCTGCACCCTGCAGAAAACACAAAGTGACAGTCCCCCAA +
Preference number: 1 (lower is better)
Translates to: EANQNYPMECVLMNR*KAAPCRKHKVTVPQ
Trigger: TTGGGGGACTGTCACTTTGTGTTTTCTGCAGGGTGCAGCTTTTCATCTGTTCATTAGTACACATTCCATAGGGTAATTCTGATTGGCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR GCA 90 bp AAACTACATCTCTACCTTATTCTTGCCCATACCTTGTTGTCAAAGTaGCATCAAACTTTGCACTTGACAGGAAATAAAGCCTGCCCTGTG +
Preference number: 1 (lower is better)
Translates to: KLHLYLILAHTLLSK*HQTLHLTGNKACPV
Trigger: CACAGGGCAGGCTTTATTTCCTGTCAAGTGCAAAGTTTGATGGCACTTTGACAACAAGGTATGGGCAAGAATAAGGTAGAGATGTAGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR TCA 90 bp ACCATTTACCAAGTTCCTAAAATAAACAGAGCATCAGGAAGGATTTaGAGTAATAATGTAGGGCCGGCTTTGATGGCTCATACCCGTAAT +
Preference number: 1 (lower is better)
Translates to: TIYQVPKINRASGRI*SNNVGPALMAHTRN
Trigger: ATTACGGGTATGAGCCATCAAAGCCGGCCCTACATTATTACTTCAAATCCTTCCTGATGCTCTGTTTATTTTAGGAACTTGGTAAATGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR GCA 90 bp CCTCAGCCAAGGGCCCCAAGTCTAATGGCTCCTCAGCCCATCTGCAGCCTGTCAGCAGCAGCACCAACTTaGAGCATGTGTTCTGAACAG +
Preference number: 2 (lower is better)
Translates to: PQPRAPSLMAPQPICSLSAAAPT*SMCSEQ
Trigger: CTGTTCAGAACACATGCTGCAAGTTGGTGCTGCTGC...TGACAGGCTGCAGATGGGCTGAGGAGCCATTAGACTTGGGGCCCTTGGCTGAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR CCA 90 bp ACACACCCTCAGCCAAGGGCCCCAAGTCTAATGGCTCCTCAGCCCATCTGCAGCGTGTCACCGACTTCCTaGCCTCCTAAGACCCTTTAT +
Preference number: 2 (lower is better)
Translates to: THPQPRAPSLMAPQPICSVSPTS*PPKTLY
Trigger: ATAAAGGGTCTTAGGAGGCCAGGAAGTCGGTGACAC...GCTGCAGATGGGCTGAGGAGCCATTAGACTTGGGGCCCTTGGCTGAGGGTGTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR TCA 90 bp CCTCAGCCAAGGGCCCCAAGTCTAATGGCTCCTCAGCCCATCTGCAGCCTGTCAGGTAGAGAAGGGTCATaGAAGCTGCAGTTTACAGCA +
Preference number: 2 (lower is better)
Translates to: PQPRAPSLMAPQPICSLSGREGS*KLQFTA
Trigger: TGCTGTAAACTGCAGCTTTCATGACCCTTCTCTACC...TGACAGGCTGCAGATGGGCTGAGGAGCCATTAGACTTGGGGCCCTTGGCTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR GCA 90 bp ACACACCCTCAGCCAAGGGCCCCAAGTCTAATGGCTCCTCAGCCCATCTGCAGCACAGGAAATAAAGCCTaGCCTGTGCCTTTACACCTG +
Preference number: 2 (lower is better)
Translates to: THPQPRAPSLMAPQPICSTGNKA*PVPLHL
Trigger: CAGGTGTAAAGGCACAGGGCAGGCTTTATTTCCTGT...GCTGCAGATGGGCTGAGGAGCCATTAGACTTGGGGCCCTTGGCTGAGGGTGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR TCA 90 bp TCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGATATTGGTACAACATCTGGCTTGGTACAGGAGTTAGCTaGGCACTAAAGCACACTGCT +
Preference number: 2 (lower is better)
Translates to: SPLVATAPSSGYWYNIWLGTGVS*ALKHTA
Trigger: AGCAGTGTGCTTTAGTGCTCAGCTAACTCCTGTACC...AAGCCAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR CAA 90 bp GAAGGGTGCTTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGATATaGGTACAACATCTGGCTTTCTGCAGGATAAACTTTTGGGTTGCA +
Preference number: 2 (lower is better)
Translates to: EGCFPFGRYCSLFWI*VQHLAFCRINFWVA
Trigger: TGCAACCCAAAAGTTTATCCTGCAGAAAGCCAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCACCCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR-3UTR TCA 90 bp GCCCGTGAATCGTTCAGACAAGAACAAGCTCAAGAACATCTCGGATCTAAAGACGTGTGCACCCAGATATaGAAGGAGCAAGTGCGCACT +
Preference number: 2 (lower is better)
Translates to: ARESFRQEQAQEHLGSKDVCTQI*KEQVRT
Trigger: AGTGCGCACTTGCTCCTTTCATATCTGGGTGCACAC...GTCTTTAGATCCGAGATGTTCTTGAGCTTGTTCTTGTCTGAACGATTCACGGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR CCA 90 bp CTAAGCAGCCAACTTACGGAAATCTTCCTGCCTTTGTGTGTCAAATGTTGGGATTATCTGGCTCAGGCATaGCCCGTGAATCGTTCAGAC +
Preference number: 2 (lower is better)
Translates to: LSSQLTEIFLPLCVKCWDYLAQA*PVNRSD
Trigger: GTCTGAACGATTCACGGGCCATGCCTGAGCCAGATA...ATCCCAACATTTGACACACAAAGGCAGGAAGATTTCCGTAAGTTGGCTGCTTAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR GCA 90 bp TTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGATATTGGTACAACATCTGGCTGATAAACTTTTGGGTTaGATTTTCCAGGCTGTGAGG +
Preference number: 2 (lower is better)
Translates to: FPFGRYCSLFWILVQHLADKLLG*IFQAVR
Trigger: CCTCACAGCCTGGAAAATGCAACCCAAAAGTTTATC...AGCCAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR-3UTR GCA 90 bp AAGTGGGTGAACTCTACGGAGGAAGAATTCTTCCCTCTGAGACCCCTGGAGAGCAACAAAAAGTACCAGTaGTCTAACAGAAGCCAATCA +
Preference number: 2 (lower is better)
Translates to: KWVNSTEEEFFPLRPLESNKKYQ*SNRSQS
Trigger: TGATTGGCTTCTGTTAGAGCACTGGTACTTTTTGTT...GCTCTCCAGGGGTCTCAGAGGGAAGAATTCTTCCTCCGTAGAGTTCACCCACTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR CCA 90 bp CACTTAGCTTGTTGCTTCAGGGCTCCTAAAAGCTGCAGTGCTTTCTTTTCTCCAATTTACAAAAGAAGTTaGGCCCCAAAGGATGGAGAT +
Preference number: 2 (lower is better)
Translates to: HLACCFRAPKSCSAFFSPIYKRS*APKDGD
Trigger: ATCTCCATCCTTTGGGGCCCAACTTCTTTTGTAAAT...TGGAGAAAAGAAAGCACTGCAGCTTTTAGGAGCCCTGAAGCAACAAGCTAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CAA 90 bp CATTTACTAAGAAAACTACATCTCTACCTTATTCTTGCCCATACCTaGTTGTCAAAGTGCCATCAAACTTTGCACTTGACAGGAAATAAA +
Preference number: 2 (lower is better)
Translates to: HLLRKLHLYLILAHT*LSKCHQTLHLTGNK
Trigger: TTTATTTCCTGTCAAGTGCAAAGTTTGATGGCACTTTGACAACAAGGTATGGGCAAGAATAAGGTAGAGATGTAGTTTTCTTAGTAAATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CCA 72 bp CCCTCTGAGACCCCTGGAGAGCTTCCCTCTCCTCTGTaGGCAGGCAGCTCACACATCTTCTCTAGCTCACAC +
Preference number: 3 (lower is better)
Translates to: PSETPGELPSPL*AGSSHIFSSSH
Trigger: GTGTGAGCTAGAGAAGATGTGTGAGCTGCCTGCCCACAGAGGAGAGGGAAGCTCTCCAGGGGTCTCAGAGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR GCA 72 bp CACTATCCTGCCTGGAGGAGGAGCTGCCCCAACATCTaGTGGTTACACCCTCAACACACTGAGCAAGGTGGA +
Preference number: 3 (lower is better)
Translates to: HYPAWRRSCPNI*WLHPQHTEQGG
Trigger: TCCACCTTGCTCAGTGTGTTGAGGGTGTAACCAGCAGATGTTGGGGCAGCTCCTCCTCCAGGCAGGATAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CCA 72 bp TATCCTGCCTGGAGGAGGAGCTGCCCCAACATCTGCTaGTTACACCCTCAACACACTGAGCAAGGTGGAGAG +
Preference number: 3 (lower is better)
Translates to: YPAWRRSCPNIC*LHPQHTEQGGE
Trigger: CTCTCCACCTTGCTCAGTGTGTTGAGGGTGTAACCAGCAGATGTTGGGGCAGCTCCTCCTCCAGGCAGGATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR CAA 90 bp CCTCAGCCAAGGGCCCCAAGTCTAATGGCTCCTCAGCCCATCTGCAGCCTGTCAGAGTTAGAAGCCAGTTaGGACTACAGAAGGAGTTCC +
Preference number: 3 (lower is better)
Translates to: PQPRAPSLMAPQPICSLSELEAS*DYRRSS
Trigger: GGAACTCCTTCTGTAGTCCAAACTGGCTTCTAACTC...TGACAGGCTGCAGATGGGCTGAGGAGCCATTAGACTTGGGGCCCTTGGCTGAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR CAA 90 bp AGGGCCCCAAGTCTAATGGCTCCTCAGCCCATCTGCAGCCTGTCAGGGGTGCCTCTTGCCCATACCTTGTaGTCAAAGTGCCATCAAACT +
Preference number: 3 (lower is better)
Translates to: RAPSLMAPQPICSLSGVPLAHTL*SKCHQT
Trigger: AGTTTGATGGCACTTTGACAACAAGGTATGGGCAAG...AGGCACCCCTGACAGGCTGCAGATGGGCTGAGGAGCCATTAGACTTGGGGCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CCA 72 bp AGAAACAATCAGAAGGCCAGAGGGCACTATCCTGCCTaGAGGAGGAGCTGCCCCAACATCTGCTGGTTACAC +
Preference number: 3 (lower is better)
Translates to: RNNQKARGHYPA*RRSCPNICWLH
Trigger: GTGTAACCAGCAGATGTTGGGGCAGCTCCTCCTCCAGGCAGGATAGTGCCCTCTGGCCTTCTGATTGTTTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR TCA 72 bp AGTCTCATTCTCCCTCTCCGGGTTTGTTTCTCCTCCTaGCGTAACACCTGCAGGGACCTCTCACTCCATGTC +
Preference number: 3 (lower is better)
Translates to: SLILPLRVCFSS*RNTCRDLSLHV
Trigger: GACATGGAGTGAGAGGTCCCTGCAGGTGTTACGTCAGGAGGAGAAACAAACCCGGAGAGGGAGAATGAGACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR CAA 90 bp CCTCAGCCAAGGGCCCCAAGTCTAATGGCTCCTCAGCCCATCTGCAGCCTGTCACATCAAACTTTGCACTaGACAGGAAATAAAGCCTGC +
Preference number: 3 (lower is better)
Translates to: PQPRAPSLMAPQPICSLSHQTLH*TGNKAC
Trigger: GCAGGCTTTATTTCCTGTCAAGTGCAAAGTTTGATG...TGACAGGCTGCAGATGGGCTGAGGAGCCATTAGACTTGGGGCCCTTGGCTGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CCA 72 bp CAGTCATACAGTTCCCAAAAGGTGTCACCGACTTCCTaGCCTCCTAAGACCCTTTATCTGGCTCAGGCATGG +
Preference number: 3 (lower is better)
Translates to: QSYSSQKVSPTS*PPKTLYLAQAW
Trigger: CCATGCCTGAGCCAGATAAAGGGTCTTAGGAGGCCAGGAAGTCGGTGACACCTTTTGGGAACTGTATGACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR CAA 90 bp TTCCAGGCTGTGAGGCGTCCTCTGGCCAGTGAGGGGAGCTATTGGACTGGTACAAGTCTGAAGAGTTTATaGCCTTCTCTGCTTCGTAGA +
Preference number: 3 (lower is better)
Translates to: FQAVRRPLASEGSYWTGTSLKSL*PSLLRR
Trigger: TCTACGAAGCAGAGAAGGCAATAAACTCTTCAGACT...TGTACCAGTCCAATAGCTCCCCTCACTGGCCAGAGGACGCCTCACAGCCTGGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR CCA 72 bp GGGTGCTTCCCCTTTGGTCGCTACTGCTCCCTCTTCTaGATATTGGTACAACATCTGGCTTTCTGCAGGATA +
Preference number: 3 (lower is better)
Translates to: GCFPFGRYCSLF*ILVQHLAFCRI
Trigger: TATCCTGCAGAAAGCCAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCACCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR TCA 72 bp GAGCAAGGTGGAGAGCAGTGGGGTAGAGAAGGGTCATaGAAGCTGCAGTTTACAGCAACCAACACAGCTAAT +
Preference number: 3 (lower is better)
Translates to: EQGGEQWGREGS*KLQFTATNTAN
Trigger: ATTAGCTGTGTTGGTTGCTGTAAACTGCAGCTTTCATGACCCTTCTCTACCCCACTGCTCTCCACCTTGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR GCA 72 bp ACAACATCTGGCTTTCTGCAGGATAAACTTTTGGGTTaGATTTTCCAGGCTGTGAGGCGTCCTCTGGCCAGT +
Preference number: 3 (lower is better)
Translates to: TTSGFLQDKLLG*IFQAVRRPLAS
Trigger: ACTGGCCAGAGGACGCCTCACAGCCTGGAAAATGCAACCCAAAAGTTTATCCTGCAGAAAGCCAGATGTTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR GCA 72 bp ATGAAGACTGAAGGGTGCTTCCCCTTTGGTCGCTACTaGTCCCTCTTCTGGATATTGGTACAACATCTGGCT +
Preference number: 3 (lower is better)
Translates to: MKTEGCFPFGRY*SLFWILVQHLA
Trigger: AGCCAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCACCCTTCAGTCTTCAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR GCA 72 bp TCTTTCACGGTCTTCCTACACAAGCGAGCACTCTGCTaGGTCACAGATTTACAGCTAAGCTATGGTGGGAAG +
Preference number: 3 (lower is better)
Translates to: SFTVFLHKRALC*VTDLQLSYGGK
Trigger: CTTCCCACCATAGCTTAGCTGTAAATCTGTGACGCAGCAGAGTGCTCGCTTGTGTAGGAAGACCGTGAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR TCA 72 bp CTCCTAAGACCCTTTATCTGGCTCAGGCATGGCCCGTaGATCGTTCAGACAAGAACAAGCTCAAGAACATCT +
Preference number: 3 (lower is better)
Translates to: LLRPFIWLRHGP*IVQTRTSSRTS
Trigger: AGATGTTCTTGAGCTTGTTCTTGTCTGAACGATTCACGGGCCATGCCTGAGCCAGATAAAGGGTCTTAGGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CCA 72 bp AGCACTCTGCTGCGTCACAGATTTACAGCTAAGCTATaGTGGGAAGTGGGTGAACTCTACGGAGGAAGAATT +
Preference number: 3 (lower is better)
Translates to: STLLRHRFTAKL*WEVGELYGGRI
Trigger: AATTCTTCCTCCGTAGAGTTCACCCACTTCCCACCATAGCTTAGCTGTAAATCTGTGACGCAGCAGAGTGCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR-3UTR CAA 90 bp TCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGATATTGGTACAACATCTGGCTTTACTTCTTGCAGTCCTaGGACACCATGCTTATGTTC +
Preference number: 3 (lower is better)
Translates to: SPLVATAPSSGYWYNIWLYFLQS*DTMLMF
Trigger: GAACATAAGCATGGTGTCCAAGGACTGCAAGAAGTA...AAGCCAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR-3UTR CAA 90 bp TTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGATATTGGTACAACATCTGGCTGTAATTAGTTACTTCTaGCAGTCCTTGGACACCATG +
Preference number: 3 (lower is better)
Translates to: FPFGRYCSLFWILVQHLAVISYF*QSLDTM
Trigger: CATGGTGTCCAAGGACTGCAAGAAGTAACTAATTAC...AGCCAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR TCA 72 bp CGTAGAGAACGTAGCATGTTTCTTCAGCACACCTTTTaGAGCGCATCGAGCATGGCTGAGTGTGTTGTATCT +
Preference number: 3 (lower is better)
Translates to: RRERSMFLQHTF*SASSMAECVVS
Trigger: AGATACAACACACTCAGCCATGCTCGATGCGCTTCAAAAGGTGTGCTGAAGAAACATGCTACGTTCTCTACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR GCA 72 bp CCAGATATGAAAGGAGCAAGTGCGCACTTAGCTTGTTaGTTCAGGGCTCCTAAAAGCTGCAGTGCTTTCTTT +
Preference number: 3 (lower is better)
Translates to: PDMKGASAHLAC*FRAPKSCSAFF
Trigger: AAAGAAAGCACTGCAGCTTTTAGGAGCCCTGAAGCAACAAGCTAAGTGCGCACTTGCTCCTTTCATATCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR TCA 72 bp TGTAGGAGCAGCAGCACCAACTTGCAGCATGTGTTCTaGACAGGAATCATACAGTCATACAGTTCCCAAAAG +
Preference number: 3 (lower is better)
Translates to: CRSSSTNLQHVF*TGIIQSYSSQK
Trigger: CTTTTGGGAACTGTATGACTGTATGATTCCTGTTCAGAACACATGCTGCAAGTTGGTGCTGCTGCTCCTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR GCA 72 bp TCCCTCTTCTGGATATTGGTACAACATCTGGCTTTCTaGAGGATAAACTTTTGGGTTGCATTTTCCAGGCTG +
Preference number: 3 (lower is better)
Translates to: SLFWILVQHLAF*RINFWVAFSRL
Trigger: CAGCCTGGAAAATGCAACCCAAAAGTTTATCCTGCAGAAAGCCAGATGTTGTACCAATATCCAGAAGAGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR GCA 72 bp AAAATTAGTATATTCATTGCAATGAAGACTGAAGGGTaGTTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGG +
Preference number: 3 (lower is better)
Translates to: KISIFIAMKTEG*FPFGRYCSLFW
Trigger: CCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCACCCTTCAGTCTTCATTGCAATGAATATACTAATTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR GCA 72 bp TGCCATCAAACTTTGCACTTGACAGGAAATAAAGCCTaGCCTGTGCCTTTACACCTGAGTTCATTGATGGTT +
Preference number: 3 (lower is better)
Translates to: CHQTLHLTGNKA*PVPLHLSSLMV
Trigger: AACCATCAATGAACTCAGGTGTAAAGGCACAGGGCAGGCTTTATTTCCTGTCAAGTGCAAAGTTTGATGGCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR TCA 72 bp GCCTATTGGAAGGCAAAATTAGTATATTCATTGCAATaGAGACTGAAGGGTGCTTCCCCTTTGGTCGCTACT +
Preference number: 3 (lower is better)
Translates to: AYWKAKLVYSLQ*RLKGASPLVAT
Trigger: AGTAGCGACCAAAGGGGAAGCACCCTTCAGTCTTCATTGCAATGAATATACTAATTTTGCCTTCCAATAGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR GCA 72 bp CTCTACCTTATTCTTGCCCATACCTTGTTGTCAAAGTaGCATCAAACTTTGCACTTGACAGGAAATAAAGCC +
Preference number: 3 (lower is better)
Translates to: LYLILAHTLLSK*HQTLHLTGNKA
Trigger: GGCTTTATTTCCTGTCAAGTGCAAAGTTTGATGGCACTTTGACAACAAGGTATGGGCAAGAATAAGGTAGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR TCA 72 bp CAGAATTACCCTATGGAATGTGTACTAATGAACAGATaGAAAGCTGCACCCTGCAGAAAACACAAAGTGACA +
Preference number: 3 (lower is better)
Translates to: QNYPMECVLMNR*KAAPCRKHKVT
Trigger: TGTCACTTTGTGTTTTCTGCAGGGTGCAGCTTTTCATCTGTTCATTAGTACACATTCCATAGGGTAATTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR TCA 72 bp GTCGAACTTCTTCATCTGAGAAGATATCAAAGCTGCTaGACTGAATATTGTGTTTGTGAAGGATTTCCACCA +
Preference number: 3 (lower is better)
Translates to: VELLHLRRYQSC*TEYCVCEGFPP
Trigger: TGGTGGAAATCCTTCACAAACACAATATTCAGTTCAGCAGCTTTGATATCTTCTCAGATGAAGAAGTTCGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211769.2
3UTR GCA 72 bp GGAATTAGTGACAGCGATTATAAGTTTACACAGACATaGTACACACAAGCATCACTACAGAGACATTCTACA +
Preference number: 3 (lower is better)
Translates to: GISDSDYKFTQT*YTQASLQRHST
Trigger: TGTAGAATGTCTCTGTAGTGATGCTTGTGTGTAGCATGTCTGTGTAAACTTATAATCGCTGTCACTAATTCC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR GCA 72 bp CCATTTACTAAGAAAACTACATCTCTACCTTATTCTTaGCCATACCTTGTTGTCAAAGTGCCATCAAACTTT +
Preference number: 3 (lower is better)
Translates to: PFTKKTTSLPYS*PYLVVKVPSNF
Trigger: AAAGTTTGATGGCACTTTGACAACAAGGTATGGGCAAGAATAAGGTAGAGATGTAGTTTTCTTAGTAAATGG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR GCA 90 bp CCAGTGGGCTGGCATGTCATCCACGGAGTCTGCAGTGTCAAAACAGGTTCAGAGGCCGACTTCCACCACTaGCACGGCTGCCTCGCCTGC +
Preference number: 4 (lower is better)
Translates to: PVGWHVIHGVCSVKTGSEADFHH*HGCLAC
Trigger: GCAGGCGAGGCAGCCGTGGCAGTGGTGGAAGTCGGC...CTCTGAACCTGTTTTGACACTGCAGACTCCGTGGATGACATGCCAGCCCACTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211769.2
CDS-3UTR CCA 90 bp CCTCAGCCAAGGGCCCCAAGTCTAATGGCTCCTCAGCCCATCTGCAGCCTGTCACCTACACTGACAGGCTaGAGAGGAGGAGCCCCACAC +
Preference number: 4 (lower is better)
Translates to: PQPRAPSLMAPQPICSLSPTLTG*RGGAPH
Trigger: GTGTGGGGCTCCTCCTCTCCAGCCTGTCAGTGTAGG...TGACAGGCTGCAGATGGGCTGAGGAGCCATTAGACTTGGGGCCCTTGGCTGAGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp ACTATCCTGCCTGGAGGAGGAGCTGCCCCAACATCTGCTGGTTACACCCTCAACGACGCGCACCTACACTaGCAGGCTGGAGAGGAGGAG +
Preference number: 4 (lower is better)
Translates to: TILPGGGAAPTSAGYTLNDAHLH*QAGEEE
Trigger: CTCCTCCTCTCCAGCCTGTCAGTGTAGGTGCGCGTC...GTTGAGGGTGTAACCAGCAGATGTTGGGGCAGCTCCTCCTCCAGGCAGGATAGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR GCA 90 bp CTGAAGGGTGCTTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGATATTGGTACGCCGACTTCCACCACTaGCACGGCTGCCTCGCCTGC +
Preference number: 4 (lower is better)
Translates to: LKGASPLVATAPSSGYWYADFHH*HGCLAC
Trigger: GCAGGCGAGGCAGCCGTGGCAGTGGTGGAAGTCGGC...GTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCACCCTTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR TCA 90 bp AGGGCCCCAAGTCTAATGGCTCCTCAGCCCATCTGCAGCCTGTCAGGGGTGCCTATGAACCACAAGGAGTaGCTTGGTTTTGAGGCGCAG +
Preference number: 4 (lower is better)
Translates to: RAPSLMAPQPICSLSGVPMNHKE*LGFEAQ
Trigger: CTGCGCCTCAAAACCAAGTCACTCCTTGTGGTTCAT...AGGCACCCCTGACAGGCTGCAGATGGGCTGAGGAGCCATTAGACTTGGGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp AGGGCCCCAAGTCTAATGGCTCCTCAGCCCATCTGCAGCCTGTCAGGGGTGCCTCGTGTCCAGCTCTTCTaGTGCTTCCAGCTCCTTAAT +
Preference number: 4 (lower is better)
Translates to: RAPSLMAPQPICSLSGVPRVQLF*CFQLLN
Trigger: ATTAAGGAGCTGGAAGCATCAGAAGAGCTGGACACG...AGGCACCCCTGACAGGCTGCAGATGGGCTGAGGAGCCATTAGACTTGGGGCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR GCA 90 bp ATGTGTGCACCCAGATATGAAAGGAGCAAGTGCGCACTTAGCTTGTTGCTTCAGGCCGACTTCCACCACTaGCACGGCTGCCTCGCCTGC +
Preference number: 4 (lower is better)
Translates to: MCAPRYERSKCALSLLLQADFHH*HGCLAC
Trigger: GCAGGCGAGGCAGCCGTGGCAGTGGTGGAAGTCGGC...CTGAAGCAACAAGCTAAGTGCGCACTTGCTCCTTTCATATCTGGGTGCACACAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR CCA 90 bp AAGTGGGTGAACTCTACGGAGGAAGAATTCTTCCCTCTGAGACCCCTGGAGAGCGCGTTTCCCTCTGCCTaGCAGCTGAGCAGGAGGAAG +
Preference number: 4 (lower is better)
Translates to: KWVNSTEEEFFPLRPLESAFPSA*QLSRRK
Trigger: CTTCCTCCTGCTCAGCTGCCAGGCAGAGGGAAACGC...GCTCTCCAGGGGTCTCAGAGGGAAGAATTCTTCCTCCGTAGAGTTCACCCACTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR CCA 90 bp CGGCTTCCAGTGGGCTGGCATGTCATCCACGGAGTCTGCAGTGTCAAAACAGGTACACTGTGGAGCCCATaGTGCCCAGAAATGAACCAC +
Preference number: 4 (lower is better)
Translates to: RLPVGWHVIHGVCSVKTGTLWSP*CPEMNH
Trigger: GTGGTTCATTTCTGGGCACCATGGGCTCCACAGTGT...ACCTGTTTTGACACTGCAGACTCCGTGGATGACATGCCAGCCCACTGGAAGCCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211769.2
CDS-3UTR TCA 90 bp ACAGCTTCGGCTTCCAGTGGGCTGGCATGTCATCCACGGAGTCTGCAGTGTCAAATGAACCACAAGGAGTaGCTTGGTTTTGAGGCGCAG +
Preference number: 4 (lower is better)
Translates to: TASASSGLACHPRSLQCQMNHKE*LGFEAQ
Trigger: CTGCGCCTCAAAACCAAGTCACTCCTTGTGGTTCAT...TTGACACTGCAGACTCCGTGGATGACATGCCAGCCCACTGGAAGCCGAAGCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211769.2
CDS-3UTR TCA 90 bp GGGCACTATCCTGCCTGGAGGAGGAGCTGCCCCAACATCTGCTGGTTACACCCTCTTTCTGAGAATTCTTaGAGAACAGGAAGGTGGGGA +
Preference number: 4 (lower is better)
Translates to: GHYPAWRRSCPNICWLHPLSENS*RTGRWG
Trigger: TCCCCACCTTCCTGTTCTTCAAGAATTCTCAGAAAG...AGGGTGTAACCAGCAGATGTTGGGGCAGCTCCTCCTCCAGGCAGGATAGTGCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp AAGTGGGTGAACTCTACGGAGGAAGAATTCTTCCCTCTGAGACCCCTGGAGAGCCCACCATCTGCTTGCTaGAACCACAGCGTGGTTCTT +
Preference number: 4 (lower is better)
Translates to: KWVNSTEEEFFPLRPLESPPSAC*NHSVVL
Trigger: AAGAACCACGCTGTGGTTTCAGCAAGCAGATGGTGG...GCTCTCCAGGGGTCTCAGAGGGAAGAATTCTTCCTCCGTAGAGTTCACCCACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp GCAATGAAGACTGAAGGGTGCTTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGCGTGTCCAGCTCTTCTaGTGCTTCCAGCTCCTTAAT +
Preference number: 4 (lower is better)
Translates to: AMKTEGCFPFGRYCSLFWRVQLF*CFQLLN
Trigger: ATTAAGGAGCTGGAAGCATCAGAAGAGCTGGACACG...CCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCACCCTTCAGTCTTCATTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR GCA 90 bp GGGCACTATCCTGCCTGGAGGAGGAGCTGCCCCAACATCTGCTGGTTACACCCTACCACCCCAGCTGGATaGTTAAACATAACAAGTATG +
Preference number: 4 (lower is better)
Translates to: GHYPAWRRSCPNICWLHPTTPAG*LNITSM
Trigger: CATACTTGTTATGTTTAAGCATCCAGCTGGGGTGGT...AGGGTGTAACCAGCAGATGTTGGGGCAGCTCCTCCTCCAGGCAGGATAGTGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CAA 72 bp TTGGCCATAAACTGCCTGGCGTCAGATTCCCGAAGTTaGAGCCAGGCTGACGAAAGTCTCATTCTCCCTCTC +
Preference number: 4 (lower is better)
Translates to: LAINCLASDSRS*SQADESLILPL
Trigger: GAGAGGGAGAATGAGACTTTCGTCAGCCTGGCTCAAACTTCGGGAATCTGACGCCAGGCAGTTTATGGCCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp AAGTGGGTGAACTCTACGGAGGAAGAATTCTTCCCTCTGAGACCCCTGGAGAGCCATGGTGCCCAGAAATaGACCACAAGGAGTGACTTG +
Preference number: 4 (lower is better)
Translates to: KWVNSTEEEFFPLRPLESHGAQK*TTRSDL
Trigger: CAAGTCACTCCTTGTGGTTCATTTCTGGGCACCATG...GCTCTCCAGGGGTCTCAGAGGGAAGAATTCTTCCTCCGTAGAGTTCACCCACTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp ACACACCCTCAGCCAAGGGCCCCAAGTCTAATGGCTCCTCAGCCCATCTGCAGCGAAAAGCTCTTACCTTaGCAATATCCAATCCTCCAA +
Preference number: 4 (lower is better)
Translates to: THPQPRAPSLMAPQPICSEKLLP*QYPILQ
Trigger: TTGGAGGATTGGATATTGTCAAGGTAAGAGCTTTTC...GCTGCAGATGGGCTGAGGAGCCATTAGACTTGGGGCCCTTGGCTGAGGGTGTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp TCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGATATTGGTACAACATCTGGCTTCCACCATCTGCTTGCTaGAACCACAGCGTGGTTCTT +
Preference number: 4 (lower is better)
Translates to: SPLVATAPSSGYWYNIWLPPSAC*NHSVVL
Trigger: AAGAACCACGCTGTGGTTTCAGCAAGCAGATGGTGG...AAGCCAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR CCA 90 bp TTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGATATTGGTACAACATCTGGCTCATCTGTACACACTGTaGAGCCCATGGTGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: FPFGRYCSLFWILVQHLAHLYTL*SPWCPE
Trigger: TTCTGGGCACCATGGGCTCCACAGTGTGTACAGATG...AGCCAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR TCA 90 bp TGCTTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGATATTGGTACAACATCTGATGAACCACAAGGAGTaGCTTGGTTTTGAGGCGCAG +
Preference number: 4 (lower is better)
Translates to: CFPFGRYCSLFWILVQHLMNHKE*LGFEAQ
Trigger: CTGCGCCTCAAAACCAAGTCACTCCTTGTGGTTCAT...CAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR TCA 90 bp ATGTGTGCACCCAGATATGAAAGGAGCAAGTGCGCACTTAGCTTGTTGCTTCAGCCACAGCGTGGTTCTTaGGGTGTTCCCTTCATGAAC +
Preference number: 4 (lower is better)
Translates to: MCAPRYERSKCALSLLLQPQRGS*GVPFMN
Trigger: GTTCATGAAGGGAACACCTCAAGAACCACGCTGTGG...CTGAAGCAACAAGCTAAGTGCGCACTTGCTCCTTTCATATCTGGGTGCACACAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp CCAGTGGGCTGGCATGTCATCCACGGAGTCTGCAGTGTCAAAACAGGTTCAGAGTGGAGGCTTCACAAATaGAACATGAGGGTGTTCTTT +
Preference number: 4 (lower is better)
Translates to: PVGWHVIHGVCSVKTGSEWRLHK*NMRVFF
Trigger: AAAGAACACCCTCATGTTTCATTTGTGAAGCCTCCA...CTCTGAACCTGTTTTGACACTGCAGACTCCGTGGATGACATGCCAGCCCACTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211769.2
CDS-3UTR TCA 90 bp GCAATGAAGACTGAAGGGTGCTTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGTCGAACTTCTTCATCTaGGAAGATATCAAAGCTGCT +
Preference number: 4 (lower is better)
Translates to: AMKTEGCFPFGRYCSLFWSNFFI*EDIKAA
Trigger: AGCAGCTTTGATATCTTCTCAGATGAAGAAGTTCGA...CCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCACCCTTCAGTCTTCATTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR TCA 90 bp GAAAACTACATCTCTACCTTATTCTTGCCCATACCTTGTTGTCAAAGTGCCATCCCTCTGCCTGGCAGCTaGGCAGGAGGAAGCATGAGA +
Preference number: 4 (lower is better)
Translates to: ENYISTLFLPIPCCQSAIPLPGS*AGGSMR
Trigger: TCTCATGCTTCCTCCTGCTCAGCTGCCAGGCAGAGG...GATGGCACTTTGACAACAAGGTATGGGCAAGAATAAGGTAGAGATGTAGTTTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR GCA 90 bp AACTCACAAATGGGAGGAAGAGCTGGCAAACAATGTCAGGACAAAGTTAAAAGGCTGTGGAGCCCATGGTaGCCAGAAATGAACCACAAG +
Preference number: 4 (lower is better)
Translates to: NSQMGGRAGKQCQDKVKRLWSPW*PEMNHK
Trigger: CTTGTGGTTCATTTCTGGGCACCATGGGCTCCACAG...CCTTTTAACTTTGTCCTGACATTGTTTGCCAGCTCTTCCTCCCATTTGTGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR CCA 90 bp AACTCACAAATGGGAGGAAGAGCTGGCAAACAATGTCAGGACAAAGTTAAAAGGACACTGTGGAGCCCATaGTGCCCAGAAATGAACCAC +
Preference number: 4 (lower is better)
Translates to: NSQMGGRAGKQCQDKVKRTLWSP*CPEMNH
Trigger: GTGGTTCATTTCTGGGCACCATGGGCTCCACAGTGT...CCTTTTAACTTTGTCCTGACATTGTTTGCCAGCTCTTCCTCCCATTTGTGAGTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CAA 72 bp CTTGCCCATACCTTGTTGTCAAAGTGCCATCAAACTTaGCACTTGACAGGAAATAAAGCCTGCCCTGTGCCT +
Preference number: 4 (lower is better)
Translates to: LAHTLLSKCHQT*HLTGNKACPVP
Trigger: AGGCACAGGGCAGGCTTTATTTCCTGTCAAGTGCAAAGTTTGATGGCACTTTGACAACAAGGTATGGGCAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp ACAGACATGCTACACACAAGCATCACTACAGAGACATTCTACACGCAATCATTTCCACAGCGTGGTTCTTaGGGTGTTCCCTTCATGAAC +
Preference number: 4 (lower is better)
Translates to: TDMLHTSITTETFYTQSFPQRGS*GVPFMN
Trigger: GTTCATGAAGGGAACACCTCAAGAACCACGCTGTGG...AAATGATTGCGTGTAGAATGTCTCTGTAGTGATGCTTGTGTGTAGCATGTCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR GCA 90 bp ACAGACATGCTACACACAAGCATCACTACAGAGACATTCTACACGCAATCATTTCTGTGGAGCCCATGGTaGCCAGAAATGAACCACAAG +
Preference number: 4 (lower is better)
Translates to: TDMLHTSITTETFYTQSFLWSPW*PEMNHK
Trigger: CTTGTGGTTCATTTCTGGGCACCATGGGCTCCACAG...AAATGATTGCGTGTAGAATGTCTCTGTAGTGATGCTTGTGTGTAGCATGTCTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR CCA 90 bp TGTTCCAAGGTAATTAGTTACTTCTTGCAGTCCTTGGACACCATGCTTATGTTCACACTGTGGAGCCCATaGTGCCCAGAAATGAACCAC +
Preference number: 4 (lower is better)
Translates to: CSKVISYFLQSLDTMLMFTLWSP*CPEMNH
Trigger: GTGGTTCATTTCTGGGCACCATGGGCTCCACAGTGT...GAACATAAGCATGGTGTCCAAGGACTGCAAGAAGTAACTAATTACCTTGGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR CCA 90 bp CTACATCTCTACCTTATTCTTGCCCATACCTTGTTGTCAAAGTGCCATCAAACTCATCTGTACACACTGTaGAGCCCATGGTGCCCAGAA +
Preference number: 4 (lower is better)
Translates to: LHLYLILAHTLLSKCHQTHLYTL*SPWCPE
Trigger: TTCTGGGCACCATGGGCTCCACAGTGTGTACAGATG...AGTTTGATGGCACTTTGACAACAAGGTATGGGCAAGAATAAGGTAGAGATGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CAA 72 bp TTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGATATaGGTACAACATCTGGCTTTCTGCAGGATAAACTTT +
Preference number: 4 (lower is better)
Translates to: FPFGRYCSLFWI*VQHLAFCRINF
Trigger: AAAGTTTATCCTGCAGAAAGCCAGATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR TCA 90 bp TGTTCCAAGGTAATTAGTTACTTCTTGCAGTCCTTGGACACCATGCTTATGTTCCATGGTGCCCAGAAATaGACCACAAGGAGTGACTTG +
Preference number: 4 (lower is better)
Translates to: CSKVISYFLQSLDTMLMFHGAQK*TTRSDL
Trigger: CAAGTCACTCCTTGTGGTTCATTTCTGGGCACCATG...GAACATAAGCATGGTGTCCAAGGACTGCAAGAAGTAACTAATTACCTTGGAACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR TCA 90 bp ATGTGTGCACCCAGATATGAAAGGAGCAAGTGCGCACTTAGCTTGTTGCTTCAGTCGAACTTCTTCATCTaGGAAGATATCAAAGCTGCT +
Preference number: 4 (lower is better)
Translates to: MCAPRYERSKCALSLLLQSNFFI*EDIKAA
Trigger: AGCAGCTTTGATATCTTCTCAGATGAAGAAGTTCGA...CTGAAGCAACAAGCTAAGTGCGCACTTGCTCCTTTCATATCTGGGTGCACACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CAA 72 bp CATACCTTGTTGTCAAAGTGCCATCAAACTTTGCACTaGACAGGAAATAAAGCCTGCCCTGTGCCTTTACAC +
Preference number: 4 (lower is better)
Translates to: HTLLSKCHQTLH*TGNKACPVPLH
Trigger: GTGTAAAGGCACAGGGCAGGCTTTATTTCCTGTCAAGTGCAAAGTTTGATGGCACTTTGACAACAAGGTATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp CTCCCTCTTCTGGATATTGGTACAACATCTGGCTTTCTGCAGGATAAACTTTTGCTTTCTGAGAATTCTTaGAGAACAGGAAGGTGGGGA +
Preference number: 4 (lower is better)
Translates to: LPLLDIGTTSGFLQDKLLLSENS*RTGRWG
Trigger: TCCCCACCTTCCTGTTCTTCAAGAATTCTCAGAAAG...CAAAAGTTTATCCTGCAGAAAGCCAGATGTTGTACCAATATCCAGAAGAGGGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR CAA 72 bp ACTTACGGAAATCTTCCTGCCTTTGTGTGTCAAATGTaGGGATTAAAGGCATGTACATACTCCCAAGTCTTG +
Preference number: 4 (lower is better)
Translates to: TYGNLPAFVCQM*GLKACTYSQVL
Trigger: CAAGACTTGGGAGTATGTACATGCCTTTAATCCCAACATTTGACACACAAAGGCAGGAAGATTTCCGTAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp AACTCACAAATGGGAGGAAGAGCTGGCAAACAATGTCAGGACAAAGTTAAAAGGTTCCAGCTTCACAAATaGAACATGAGGGTGTTCTTT +
Preference number: 4 (lower is better)
Translates to: NSQMGGRAGKQCQDKVKRFQLHK*NMRVFF
Trigger: AAAGAACACCCTCATGTTTCATTTGTGAAGCTGGAA...CCTTTTAACTTTGTCCTGACATTGTTTGCCAGCTCTTCCTCCCATTTGTGAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR TCA 90 bp GTGCTACAGGAGGTCCATGTGTTAAGAAAGGGATTTAAAGGAATTAGTGACAGCTGTCTTTCAGTTCCTTaGCAATATCCAATCCTCCAA +
Preference number: 4 (lower is better)
Translates to: VLQEVHVLRKGFKGISDSCLSVP*QYPILQ
Trigger: TTGGAGGATTGGATATTGTCAAGGAACTGAAAGACA...GCTGTCACTAATTCCTTTAAATCCCTTTCTTAACACATGGACCTCCTGTAGCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR TCA 90 bp TGTTCCAAGGTAATTAGTTACTTCTTGCAGTCCTTGGACACCATGCTTATGTTCTTCCAGCTTCACAAATaGAACATGAGGGTGTTCTTT +
Preference number: 4 (lower is better)
Translates to: CSKVISYFLQSLDTMLMFFQLHK*NMRVFF
Trigger: AAAGAACACCCTCATGTTTCATTTGTGAAGCTGGAA...GAACATAAGCATGGTGTCCAAGGACTGCAAGAAGTAACTAATTACCTTGGAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
3UTR CAA 72 bp AAACTACATCTCTACCTTATTCTTGCCCATACCTTGTaGTCAAAGTGCCATCAAACTTTGCACTTGACAGGA +
Preference number: 4 (lower is better)
Translates to: KLHLYLILAHTL*SKCHQTLHLTG
Trigger: TCCTGTCAAGTGCAAAGTTTGATGGCACTTTGACAACAAGGTATGGGCAAGAATAAGGTAGAGATGTAGTTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
3UTR CAA 72 bp AGAAAACTACATCTCTACCTTATTCTTGCCCATACCTaGTTGTCAAAGTGCCATCAAACTTTGCACTTGACA +
Preference number: 4 (lower is better)
Translates to: RKLHLYLILAHT*LSKCHQTLHLT
Trigger: TGTCAAGTGCAAAGTTTGATGGCACTTTGACAACAAGGTATGGGCAAGAATAAGGTAGAGATGTAGTTTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR CAA 90 bp GCAATGAAGACTGAAGGGTGCTTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGACCACAAGGAGTGACTaGGTTTTGAGGCGCAGTAGC +
Preference number: 5 (lower is better)
Translates to: AMKTEGCFPFGRYCSLFWTTRSD*VLRRSS
Trigger: GCTACTGCGCCTCAAAACCAAGTCACTCCTTGTGGT...CCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCACCCTTCAGTCTTCATTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR CAA 90 bp CCAGTGGGCTGGCATGTCATCCACGGAGTCTGCAGTGTCAAAACAGGTTCAGAGACCACAAGGAGTGACTaGGTTTTGAGGCGCAGTAGC +
Preference number: 5 (lower is better)
Translates to: PVGWHVIHGVCSVKTGSETTRSD*VLRRSS
Trigger: GCTACTGCGCCTCAAAACCAAGTCACTCCTTGTGGT...CTCTGAACCTGTTTTGACACTGCAGACTCCGTGGATGACATGCCAGCCCACTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211769.2
CDS-3UTR CAA 90 bp ACTATCCTGCCTGGAGGAGGAGCTGCCCCAACATCTGCTGGTTACACCCTCAACCAAGTATGTCAATTCTaGAGAACAGCAGTGAAAAGC +
Preference number: 5 (lower is better)
Translates to: TILPGGGAAPTSAGYTLNQVCQF*RTAVKS
Trigger: GCTTTTCACTGCTGTTCTCAAGAATTGACATACTTG...GTTGAGGGTGTAACCAGCAGATGTTGGGGCAGCTCCTCCTCCAGGCAGGATAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR CAA 90 bp GGGTGCTTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGATATTGGTACAACATCAATTAGAGTACGTTTaGAGCCCCTGTCGAACTTCT +
Preference number: 5 (lower is better)
Translates to: GCFPFGRYCSLFWILVQHQLEYV*SPCRTS
Trigger: AGAAGTTCGACAGGGGCTCAAAACGTACTCTAATTG...ATGTTGTACCAATATCCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCACCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR CAA 90 bp GCAATGAAGACTGAAGGGTGCTTCCCCTTTGGTCGCTACTGCTCCCTCTTCTGGTTGTCTTTCAGTTCCTaGACAATATCCAATCCTCCA +
Preference number: 5 (lower is better)
Translates to: AMKTEGCFPFGRYCSLFWLSFSS*TISNPP
Trigger: TGGAGGATTGGATATTGTCAAGGAACTGAAAGACAA...CCAGAAGAGGGAGCAGTAGCGACCAAAGGGGAAGCACCCTTCAGTCTTCATTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR CAA 90 bp CTACATCTCTACCTTATTCTTGCCCATACCTTGTTGTCAAAGTGCCATCAAACTACCACAAGGAGTGACTaGGTTTTGAGGCGCAGTAGC +
Preference number: 5 (lower is better)
Translates to: LHLYLILAHTLLSKCHQTTTRSD*VLRRSS
Trigger: GCTACTGCGCCTCAAAACCAAGTCACTCCTTGTGGT...AGTTTGATGGCACTTTGACAACAAGGTATGGGCAAGAATAAGGTAGAGATGTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR CAA 90 bp CACTTAGCTTGTTGCTTCAGGGCTCCTAAAAGCTGCAGTGCTTTCTTTTCTCCACAATTAGAGTACGTTTaGAGCCCCTGTCGAACTTCT +
Preference number: 5 (lower is better)
Translates to: HLACCFRAPKSCSAFFSPQLEYV*SPCRTS
Trigger: AGAAGTTCGACAGGGGCTCAAAACGTACTCTAATTG...TGGAGAAAAGAAAGCACTGCAGCTTTTAGGAGCCCTGAAGCAACAAGCTAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR CAA 90 bp TGTTCCAAGGTAATTAGTTACTTCTTGCAGTCCTTGGACACCATGCTTATGTTCTCTAACTTGGGTGCTTaGGGACAGATCGTGTCCAGC +
Preference number: 5 (lower is better)
Translates to: CSKVISYFLQSLDTMLMFSNLGA*GQIVSS
Trigger: GCTGGACACGATCTGTCCCAAAGCACCCAAGTTAGA...GAACATAAGCATGGTGTCCAAGGACTGCAAGAAGTAACTAATTACCTTGGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR CAA 90 bp CTACATCTCTACCTTATTCTTGCCCATACCTTGTTGTCAAAGTGCCATCAAACTTCTAACTTGGGTGCTTaGGGACAGATCGTGTCCAGC +
Preference number: 5 (lower is better)
Translates to: LHLYLILAHTLLSKCHQTSNLGA*GQIVSS
Trigger: GCTGGACACGATCTGTCCCAAAGCACCCAAGTTAGA...AGTTTGATGGCACTTTGACAACAAGGTATGGGCAAGAATAAGGTAGAGATGTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2
CDS-3UTR CAA 90 bp GTTTATTGCCTTCTCTGCTTCGTAGAGAACGTAGCATGTTTCTTCAGCACACCTTTATTGGTCAGCACTTaGAGCCTTTCCTCTAACTTG +
Preference number: 5 (lower is better)
Translates to: VYCLLCFVENVACFFSTPLLVST*SLSSNL
Trigger: CAAGTTAGAGGAAAGGCTCAAAGTGCTGACCAATAA...AGGTGTGCTGAAGAAACATGCTACGTTCTCTACGAAGCAGAGAAGGCAATAAAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000064404.8
CDS-3UTR CAA 90 bp CACAAATGGGAGGAAGAGCTGGCAAACAATGTCAGGACAAAGTTAAAAGGGTTCTTATTGGTCAGCACTTaGAGCCTTTCCTCTAACTTG +
Preference number: 5 (lower is better)
Translates to: HKWEEELANNVRTKLKGFLLVST*SLSSNL
Trigger: CAAGTTAGAGGAAAGGCTCAAAGTGCTGACCAATAA...GAACCCTTTTAACTTTGTCCTGACATTGTTTGCCAGCTCTTCCTCCCATTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211496.2