RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GLI2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000048402

Ensembl transcript IDs: ENSMUST00000062483.15, ENSMUST00000159839.8, ENSMUST00000160991.8, ENSMUST00000161056.8, ENSMUST00000161301.8, ENSMUST00000161451.8, ENSMUST00000162552.8

Found 425 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCTGGAGAGGAGGGTAGAGGTCAGGGGACCAGAAAGTGTGGAGGCTaGAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTG +
Preference number: 1 (lower is better)
Translates to: PGEEGRGQGTRKCGG*RWSLRVVCWPPAGV
Trigger: CACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTCCACACTTTCTGGTCCCCTGACCTCTACCCTCCTCTCCAGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 90 bp GAGGAGGGTAGAGGTCAGGGGACCAGAAAGTGTGGAGGCTGCAGGTaGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGAG +
Preference number: 1 (lower is better)
Translates to: EEGRGQGTRKCGGCR*SLRVVCWPPAGVEE
Trigger: CTCCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTCCACACTTTCTGGTCCCCTGACCTCTACCCTCCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 90 bp GAGGTGAGAGTCATGGGCTGCTGGGCCAAGAAGGTGGGTGAAGGCTaGATCAGGGGTGGTGTGTGTCCAAAGGCTGAGCCCAGGCCCCGC +
Preference number: 1 (lower is better)
Translates to: EVRVMGCWAKKVGEG*IRGGVCPKAEPRPR
Trigger: GCGGGGCCTGGGCTCAGCCTTTGGACACACACCACCCCTGATCCAGCCTTCACCCACCTTCTTGGCCCAGCAGCCCATGACTCTCACCTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR CCA 90 bp CTTGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTaGACGCAGGCCCTCAGCCTCAGTCTTGACCTTGCTCCGCTTATG +
Preference number: 1 (lower is better)
Translates to: LEIGQLLLCQSKRGC*TQALSLSLDLAPLM
Trigger: CATAAGCGGAGCAAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR TCA 90 bp GCTGGACGCAGGCCCTCAGCCTCAGTCTTGACCTTGCTCCGCTTATaGATGGTGATGGGGTTCACGGTGCTGCTCACAGCTGACTCGCTG +
Preference number: 1 (lower is better)
Translates to: AGRRPSASVLTLLRL*MVMGFTVLLTADSL
Trigger: CAGCGAGTCAGCTGTGAGCAGCACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR TCA 90 bp GTGCTCCATATGGGGGTTCACGTAGGGGTGGTGGGCGCTGAAGGGTaGCTCTCCAGGGCCAGCAGGGTGTGGAGAAAGTCGTATCAAGGA +
Preference number: 1 (lower is better)
Translates to: VLHMGVHVGVVGAEG*LSRASRVWRKSYQG
Trigger: TCCTTGATACGACTTTCTCCACACCCTGCTGGCCCTGGAGAGTCACCCTTCAGCGCCCACCACCCCTACGTGAACCCCCATATGGAGCAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160991.8
3UTR GCA 90 bp CTGAGTTGGGTAGGCATGGTGCTGATGGAGGTGAGAGTCATGGGCTaGTGGGCCAAGAAGGTGGGTGAAGGCTGGATCAGGGGTGGTGTG +
Preference number: 1 (lower is better)
Translates to: LSWVGMVLMEVRVMG*WAKKVGEGWIRGGV
Trigger: CACACCACCCCTGATCCAGCCTTCACCCACCTTCTTGGCCCAGCAGCCCATGACTCTCACCTCCATCAGCACCATGCCTACCCAACTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR CCA 90 bp AGTTGGGTAGGCATGGTGCTGATGGAGGTGAGAGTCATGGGCTGCTaGGCCAAGAAGGTGGGTGAAGGCTGGATCAGGGGTGGTGTGTGT +
Preference number: 1 (lower is better)
Translates to: SWVGMVLMEVRVMGC*AKKVGEGWIRGGVC
Trigger: ACACACACCACCCCTGATCCAGCCTTCACCCACCTTCTTGGCCCAGCAGCCCATGACTCTCACCTCCATCAGCACCATGCCTACCCAACT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR CCA 90 bp CCAGGGGCATGGCCCAGAGCTGTCATTTGGAGTTGGTCCTGTCTCTaGGTTGTAAACAGAGAAGTTTGCTGCCCTGGGACACAGAGGGTC +
Preference number: 1 (lower is better)
Translates to: PGAWPRAVIWSWSCL*VVNREVCCPGTQRV
Trigger: GACCCTCTGTGTCCCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATGACAGCTCTGGGCCATGCCCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 90 bp AGAGCCAGAGACCCAGGGGCATGGCCCAGAGCTGTCATTTGGAGTTaGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGG +
Preference number: 1 (lower is better)
Translates to: RARDPGAWPRAVIWS*SCLWVVNREVCCPG
Trigger: CCCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATGACAGCTCTGGGCCATGCCCCTGGGTCTCTGGCTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR GCA 90 bp TATGACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTaGCTATTCCTAGTCCACAGCAACCCAAGGCATGTAGACGCAAGT +
Preference number: 1 (lower is better)
Translates to: YDFLFLGKASSTSRP*LFLVHSNPRHVDAS
Trigger: ACTTGCGTCTACATGCCTTGGGTTGCTGTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTCATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 90 bp ACCACAAGAGCCAGAGACCCAGGGGCATGGCCCAGAGCTGTCATTTaGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGC +
Preference number: 1 (lower is better)
Translates to: TTRARDPGAWPRAVI*SWSCLWVVNREVCC
Trigger: GCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATGACAGCTCTGGGCCATGCCCCTGGGTCTCTGGCTCTTGTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 90 bp TTCTGGTTGGCATCATTTAGACAGTTGCTGCTACTGCTGCTGAGTTaGGTAGGCATGGTGCTGATGGAGGTGAGAGTCATGGGCTGCTGG +
Preference number: 1 (lower is better)
Translates to: FWLASFRQLLLLLLS*VGMVLMEVRVMGCW
Trigger: CCAGCAGCCCATGACTCTCACCTCCATCAGCACCATGCCTACCCAACTCAGCAGCAGTAGCAGCAACTGTCTAAATGATGCCAACCAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR CCA 90 bp GGCAGAATGGCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATaGTCTCAGATTCAAACCCAGAGTGGCTCCCCTCCCCTCTTTGGG +
Preference number: 1 (lower is better)
Translates to: GRMANSSSQSREYPA*SQIQTQSGSPPLFG
Trigger: CCCAAAGAGGGGAGGGGAGCCACTCTGGGTTTGAATCTGAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGCCATTCTGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 90 bp GAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGAATaGCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATGGTCTC +
Preference number: 1 (lower is better)
Translates to: ESRGNSNPFSSQVAE*QTHLLRAENIQHGL
Trigger: GAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGCCATTCTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 90 bp TCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTaGCAGAATGGCAAACTCATCTTCTCAGAGCAGAGAATATCCAGC +
Preference number: 1 (lower is better)
Translates to: SWKNPGETVIPFPPR*QNGKLIFSEQRISS
Trigger: GCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGCCATTCTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR GCA 90 bp GAACAAGCAAATTCAGTTAAGAGTTCCTCAAAGTCCAAGAATCAATaGCTTCAACCTTCCGCTCAACCACAAACCATGCATGTCATCACT +
Preference number: 1 (lower is better)
Translates to: EQANSVKSSSKSKNQ*LQPSAQPQTMHVIT
Trigger: AGTGATGACATGCATGGTTTGTGGTTGAGCGGAAGGTTGAAGGCATTGATTCTTGGACTTTGAGGAACTCTTAACTGAATTTGCTTGTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CCA 90 bp GGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTGAGAGCGGGGAGATaGACAGAGCCCGCTTGCGGC +
Preference number: 2 (lower is better)
Translates to: GQLLLCQSKRGCWTQALSLRAGR*TEPACG
Trigger: GCCGCAAGCGGGCTCTGTCCATCTCCCCGCTCTCAG...GCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR CAA 90 bp GTCAGGGGACCAGAAAGTGTGGAGGCTGCAGGTGGTCGCTCAGGGTaGTCTGCTGGCCACCAGCCGGTGTGGAGGAGCCCTGGGATCTCC +
Preference number: 2 (lower is better)
Translates to: VRGPESVEAAGGRSG*SAGHQPVWRSPGIS
Trigger: GGAGATCCCAGGGCTCCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTCCACACTTTCTGGTCCCCTGAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR TCA 90 bp AGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCATGTGTGTCCAAAGGCTaGGCCCAGGCCCCGCTGCTG +
Preference number: 2 (lower is better)
Translates to: SCSCVSPSGDAGRRPSASCVSKG*AQAPLL
Trigger: CAGCAGCGGGGCCTGGGCTCAGCCTTTGGACACACA...TGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR GCA 90 bp AGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCACAGTCCAAGCGGGGATaGTGGACGCAGGCCCTCAGC +
Preference number: 2 (lower is better)
Translates to: SCSCVSPSGDAGRRPSASQSKRG*WTQALS
Trigger: GCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTG...TGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp GAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGCTGCAAGAAGACCCCTaGGCATGGCCCAGAGCTGTC +
Preference number: 2 (lower is better)
Translates to: EAAGGRSGLSAGHQPVWRLQEDP*AWPRAV
Trigger: GACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAG...CCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR TCA 90 bp GGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCTGCTGGCTCAGGATCTaGGGGCACCAGCAGACAGAT +
Preference number: 2 (lower is better)
Translates to: GQLLLCQSKRGCWTQALSCWLRI*GHQQTD
Trigger: ATCTGTCTGCTGGTGCCCTCAGATCCTGAGCCAGCA...GCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000162552.8
3UTR-3UTR TCA 90 bp GGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTGGTGGTAATAGTCTaGAGGGTTGGTGCCTGGGGC +
Preference number: 2 (lower is better)
Translates to: GQLLLCQSKRGCWTQALSLVVIV*RVGAWG
Trigger: GCCCCAGGCACCAACCCTTCAGACTATTACCACCAG...GCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160991.8
ENSMUST00000161056.8
3UTR-3UTR CCA 90 bp GGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCGTCCATAAGAGCCACTaGCTGCTGAGCTGCTCCTGG +
Preference number: 2 (lower is better)
Translates to: GQLLLCQSKRGCWTQALSVHKSH*LLSCSW
Trigger: CCAGGAGCAGCTCAGCAGCCAGTGGCTCTTATGGAC...GCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR TCA 90 bp AGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGACCTTGCTCGTCGAGGCTGGCATCTaGGAGCGGGGAGATGGACAG +
Preference number: 2 (lower is better)
Translates to: SPSGDAGRRPSASVLTLLVEAGI*ERGDGQ
Trigger: CTGTCCATCTCCCCGCTCTCAGATGCCAGCCTCGAC...GAGCAAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR GCA 90 bp TCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGTGGACAGAGCCCGCTTaGGGCTCAGTCGTGGGGTCA +
Preference number: 2 (lower is better)
Translates to: SCVSPSGDAGRRPSASVLWTEPA*GSVVGS
Trigger: TGACCCCACGACTGAGCCGCAAGCGGGCTCTGTCCA...CAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp TTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCTGAGAGCGGGGAGATaGACAGAGCCCGCTTGCGGC +
Preference number: 2 (lower is better)
Translates to: FLEIGQLLLCQSKRGCWTLRAGR*TEPACG
Trigger: GCCGCAAGCGGGCTCTGTCCATCTCCCCGCTCTCAG...CGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp CCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGACCTTGCTCCGCGTCCATAAGAGCCACTaGCTGCTGAGCTGCTCCTGG +
Preference number: 2 (lower is better)
Translates to: PSGDAGRRPSASVLTLLRVHKSH*LLSCSW
Trigger: CCAGGAGCAGCTCAGCAGCCAGTGGCTCTTATGGAC...GCGGAGCAAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp CCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGACCTTGCTCCGCGGGAAAAGTGAAGGCTaGGCTGAGGGCACCAGCAGA +
Preference number: 2 (lower is better)
Translates to: PSGDAGRRPSASVLTLLRGKSEG*AEGTSR
Trigger: TCTGCTGGTGCCCTCAGCCCAGCCTTCACTTTTCCC...GCGGAGCAAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
3UTR-3UTR TCA 90 bp AGTCCCCTCTCTTTCAGATGTTCGTGGGCCACATCAGCAGGGCTGAGGCCCCTGGTCGAGGCTGGCATCTaGGAGCGGGGAGATGGACAG +
Preference number: 2 (lower is better)
Translates to: SPLSFRCSWATSAGLRPLVEAGI*ERGDGQ
Trigger: CTGTCCATCTCCCCGCTCTCAGATGCCAGCCTCGAC...CAGGGGCCTCAGCCCTGCTGATGTGGCCCACGAACATCTGAAAGAGAGGGGACT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000160991.8
3UTR-3UTR GCA 90 bp GGCTGCTGTGCACAGACCGGAGGTAGTGCTCCATATGGGGGTTCACGTAGGGGTTGGACAGAGCCCGCTTaGGGCTCAGTCGTGGGGTCA +
Preference number: 2 (lower is better)
Translates to: GCCAQTGGSAPYGGSRRGWTEPA*GSVVGS
Trigger: TGACCCCACGACTGAGCCGCAAGCGGGCTCTGTCCA...ACCCCTACGTGAACCCCCATATGGAGCACTACCTCCGGTCTGTGCACAGCAGCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000160991.8
3UTR-3UTR TCA 90 bp TGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGACCAGAGCCACTGGCTGCTaGGCTGCTCCTGGAGTTGTT +
Preference number: 2 (lower is better)
Translates to: CVSPSGDAGRRPSASVLTRATGC*AAPGVV
Trigger: AACAACTCCAGGAGCAGCTCAGCAGCCAGTGGCTCT...GGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR TCA 90 bp CTGCTTACAGTCATCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTGTGTCCAAAGGCTaGGCCCAGGCCCCGCTGCTG +
Preference number: 2 (lower is better)
Translates to: LLTVIPVQVFLEIGQLLLCVSKG*AQAPLL
Trigger: CAGCAGCGGGGCCTGGGCTCAGCCTTTGGACACACA...CAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTGTAAGCAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR TCA 90 bp GCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGGGGTGGCTTGCCATaGGGGTCATCTGGTGGTAAT +
Preference number: 2 (lower is better)
Translates to: APVSVQAGMLDAGPQPQSWGGLP*GSSGGN
Trigger: ATTACCACCAGATGACCCTCATGGCAAGCCACCCCA...AGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000160991.8
ENSMUST00000161056.8
3UTR-3UTR GCA 90 bp TCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGAGTCATGGAGATGGGGTaGGCTAGCAGCACCCCCGCT +
Preference number: 2 (lower is better)
Translates to: SSLRSASCSCVSPSGDAGVMEMG*ASSTPA
Trigger: AGCGGGGGTGCTGCTAGCGCACCCCATCTCCATGAC...TCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000160991.8
ENSMUST00000161056.8
3UTR-3UTR CCA 90 bp GCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTAGAGTCATGGGCTGCTaGGCCAAGAAGGTGGGTGAA +
Preference number: 2 (lower is better)
Translates to: APVSVQAGMLDAGPQPQSRVMGC*AKKVGE
Trigger: TTCACCCACCTTCTTGGCCCAGCAGCCCATGACTCT...AGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR TCA 90 bp GCTGCTCCTGGAGTTGTTGATGTAAGCTACCAGCGAGTTGGGAGAGGTCCGAATCCACATCAGCAGGGCTaGGGCCCCTGGCGGCAGAGA +
Preference number: 2 (lower is better)
Translates to: AAPGVVDVSYQRVGRGPNPHQQG*GPWRQR
Trigger: TCTCTGCCGCCAGGGGCCTCAGCCCTGCTGATGTGG...ATTCGGACCTCTCCCAACTCGCTGGTAGCTTACATCAACAACTCCAGGAGCAGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160991.8
3UTR-3UTR GCA 90 bp TCCTGCTTACAGTCATCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGGACAGAGCCCGCTTaGGGCTCAGTCGTGGGGTCA +
Preference number: 2 (lower is better)
Translates to: SCLQSSLSRSSLRSASCSWTEPA*GSVVGS
Trigger: TGACCCCACGACTGAGCCGCAAGCGGGCTCTGTCCA...GGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTGTAAGCAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR TCA 90 bp CTCAGCCTCAGTCTTGACCTTGCTCCGCTTATGAATGGTGATGGGGTTCACGGTTGTGTGTCCAAAGGCTaGGCCCAGGCCCCGCTGCTG +
Preference number: 2 (lower is better)
Translates to: LSLSLDLAPLMNGDGVHGCVSKG*AQAPLL
Trigger: CAGCAGCGGGGCCTGGGCTCAGCCTTTGGACACACA...ACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACTGAGGCTGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp CTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTACAGGATTGATGGGGTaGGGAAAAGTGAAGGCTGGG +
Preference number: 2 (lower is better)
Translates to: LLCQSKRGCWTQALSLSLTGLMG*GKVKAG
Trigger: CCCAGCCTTCACTTTTCCCCACCCCATCAATCCTGT...AAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
3UTR-3UTR CCA 90 bp GGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGACCTTGCTCCGCTTATGAATGCTGGGCCAAGAAGGTaGGTGAAGGCTGGATCAGGG +
Preference number: 2 (lower is better)
Translates to: GCWTQALSLSLDLAPLMNAGPRR*VKAGSG
Trigger: CCCTGATCCAGCCTTCACCCACCTTCTTGGCCCAGC...ATTCATAAGCGGAGCAAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp TGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGACCTTAGAGTCATGGGCTGCTaGGCCAAGAAGGTGGGTGAA +
Preference number: 2 (lower is better)
Translates to: CQSKRGCWTQALSLSLDLRVMGC*AKKVGE
Trigger: TTCACCCACCTTCTTGGCCCAGCAGCCCATGACTCT...AAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR TCA 90 bp CAGTCATCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTAGAGCCACTGGCTGCTaGGCTGCTCCTGGAGTTGTT +
Preference number: 2 (lower is better)
Translates to: QSSLSRSSLRSASCSCVSRATGC*AAPGVV
Trigger: AACAACTCCAGGAGCAGCTCAGCAGCCAGTGGCTCT...ACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp CCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGGACAGGATTGATGGGGTaGGGAAAAGTGAAGGCTGGG +
Preference number: 2 (lower is better)
Translates to: PVQVFLEIGQLLLCQSKRTGLMG*GKVKAG
Trigger: CCCAGCCTTCACTTTTCCCCACCCCATCAATCCTGT...CCGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
3UTR-3UTR TCA 90 bp GAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGGAACGAGTTTCTTTTTaGATAAGACTTTGGGTGTCC +
Preference number: 2 (lower is better)
Translates to: EAAGGRSGLSAGHQPVWRERVSF*IRLWVS
Trigger: GGACACCCAAAGTCTTATTCAAAAAGAAACTCGTTC...CCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR TCA 90 bp CTTACAGTCATCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTAGAGCCACTGGCTGCTaGGCTGCTCCTGGAGTTGTT +
Preference number: 2 (lower is better)
Translates to: LTVIPVQVFLEIGQLLLCRATGC*AAPGVV
Trigger: AACAACTCCAGGAGCAGCTCAGCAGCCAGTGGCTCT...ACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTGTAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR TCA 90 bp AGTCTTGACCTTGCTCCGCTTATGAATGGTGATGGGGTTCACGGTGCTGCTCACGGCGGCAGAGATCATTaGGAGTGTGGGGCTGCTGTG +
Preference number: 2 (lower is better)
Translates to: SLDLAPLMNGDGVHGAAHGGRDH*ECGAAV
Trigger: CACAGCAGCCCCACACTCTCAATGATCTCTGCCGCC...GTGAGCAGCACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160991.8
3UTR-3UTR GCA 90 bp CTTACAGTCATCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTTTGAGAGTGTGGGGCTaGTGTGCACAGACCGGAGGT +
Preference number: 2 (lower is better)
Translates to: LTVIPVQVFLEIGQLLLCLRVWG*CAQTGG
Trigger: ACCTCCGGTCTGTGCACAGCAGCCCCACACTCTCAA...ACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTGTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160991.8
3UTR-3UTR CCA 90 bp CTCAGCCTCAGTCTTGACCTTGCTCCGCTTATGAATGGTGATGGGGTTCACGGTGCTGGGCCAAGAAGGTaGGTGAAGGCTGGATCAGGG +
Preference number: 2 (lower is better)
Translates to: LSLSLDLAPLMNGDGVHGAGPRR*VKAGSG
Trigger: CCCTGATCCAGCCTTCACCCACCTTCTTGGCCCAGC...ACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACTGAGGCTGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp GCTGCTCCTGGAGTTGTTGATGTAAGCTACCAGCGAGTTGGGAGAGGTCCGAATGCTGGGCCAAGAAGGTaGGTGAAGGCTGGATCAGGG +
Preference number: 2 (lower is better)
Translates to: AAPGVVDVSYQRVGRGPNAGPRR*VKAGSG
Trigger: CCCTGATCCAGCCTTCACCCACCTTCTTGGCCCAGC...ATTCGGACCTCTCCCAACTCGCTGGTAGCTTACATCAACAACTCCAGGAGCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR CAA 90 bp TCTGCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGTaGGCCATTGCCCAACCCCTCTCAGGCCTAGTTAACACTTTGGGA +
Preference number: 2 (lower is better)
Translates to: SARRPLGMAQSCHLE*AIAQPLSGLVNTLG
Trigger: TCCCAAAGTGTTAACTAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CAA 90 bp AAGAGCCAGAGACCCAGGGGCATGGCCCAGAGCTGTCATTTGGAGTaGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGG +
Preference number: 2 (lower is better)
Translates to: KSQRPRGMAQSCHLE*VLSLGCKQRSLLPW
Trigger: CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATGACAGCTCTGGGCCATGCCCCTGGGTCTCTGGCTCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR TCA 90 bp CTCAGCCTCAGTCTTGACCTTGCTCCGCTTATGAATGGTGATGGGGTTCACGGTAGAGCCACTGGCTGCTaGGCTGCTCCTGGAGTTGTT +
Preference number: 2 (lower is better)
Translates to: LSLSLDLAPLMNGDGVHGRATGC*AAPGVV
Trigger: AACAACTCCAGGAGCAGCTCAGCAGCCAGTGGCTCT...ACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACTGAGGCTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR TCA 90 bp AGTCTTGACCTTGCTCCGCTTATGAATGGTGATGGGGTTCACGGTGCTGCTCACCTGGTGGTAATAGTCTaGAGGGTTGGTGCCTGGGGC +
Preference number: 2 (lower is better)
Translates to: SLDLAPLMNGDGVHGAAHLVVIV*RVGAWG
Trigger: GCCCCAGGCACCAACCCTTCAGACTATTACCACCAG...GTGAGCAGCACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160991.8
ENSMUST00000161056.8
3UTR-3UTR CCA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTACCCAGAGCTGTCATTTaGAGTTGGCCATTGCCCAAC +
Preference number: 2 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLPRAVI*SWPLPN
Trigger: GTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGG...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CCA 90 bp TCGCTGTTCTGCTTGTTCTGGTTGGCATCATTTAGACAGTTGCTGCTACTGCTGCTGAGAGCGGGGAGATaGACAGAGCCCGCTTGCGGC +
Preference number: 2 (lower is better)
Translates to: SLFCLFWLASFRQLLLLLLRAGR*TEPACG
Trigger: GCCGCAAGCGGGCTCTGTCCATCTCCCCGCTCTCAG...CAGCAGTAGCAGCAACTGTCTAAATGATGCCAACCAGAACAAGCAGAACAGCGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp GCTGACTCGCTGTTCTGCTTGTTCTGGTTGGCATCATTTAGACAGTTGCTGCTACTGAGAGCGGGGAGATaGACAGAGCCCGCTTGCGGC +
Preference number: 2 (lower is better)
Translates to: ADSLFCLFWLASFRQLLLLRAGR*TEPACG
Trigger: GCCGCAAGCGGGCTCTGTCCATCTCCCCGCTCTCAG...TAGCAGCAACTGTCTAAATGATGCCAACCAGAACAAGCAGAACAGCGAGTCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp CTCAGTCTTGACCTTGCTCCGCTTATGAATGGTGATGGGGTTCACGGTGCTGCTGTCCATAAGAGCCACTaGCTGCTGAGCTGCTCCTGG +
Preference number: 2 (lower is better)
Translates to: LSLDLAPLMNGDGVHGAAVHKSH*LLSCSW
Trigger: CCAGGAGCAGCTCAGCAGCCAGTGGCTCTTATGGAC...AGCAGCACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACTGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR GCA 90 bp TGCTCACAGCTGACTCGCTGTTCTGCTTGTTCTGGTTGGCATCATTTAGACAGTGTCATGGAGATGGGGTaGGCTAGCAGCACCCCCGCT +
Preference number: 2 (lower is better)
Translates to: CSQLTRCSACSGWHHLDSVMEMG*ASSTPA
Trigger: AGCGGGGGTGCTGCTAGCGCACCCCATCTCCATGAC...ACTGTCTAAATGATGCCAACCAGAACAAGCAGAACAGCGAGTCAGCTGTGAGCA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000160991.8
ENSMUST00000161056.8
3UTR-3UTR CCA 90 bp GCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGGAAGACCCCTGGGCATaGCCCAGAGCTGTCATTTGG +
Preference number: 2 (lower is better)
Translates to: ASWKNPGETVIPFPPRWQEDPWA*PRAVIW
Trigger: CCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTC...CTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CCA 90 bp AGTCTTGACCTTGCTCCGCTTATGAATGGTGATGGGGTTCACGGTGCTGCTCACAGAGTCATGGGCTGCTaGGCCAAGAAGGTGGGTGAA +
Preference number: 2 (lower is better)
Translates to: SLDLAPLMNGDGVHGAAHRVMGC*AKKVGE
Trigger: TTCACCCACCTTCTTGGCCCAGCAGCCCATGACTCT...GTGAGCAGCACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp CTCAGTCTTGACCTTGCTCCGCTTATGAATGGTGATGGGGTTCACGGTGCTGCTACAGGATTGATGGGGTaGGGAAAAGTGAAGGCTGGG +
Preference number: 2 (lower is better)
Translates to: LSLDLAPLMNGDGVHGAATGLMG*GKVKAG
Trigger: CCCAGCCTTCACTTTTCCCCACCCCATCAATCCTGT...AGCAGCACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
3UTR CAA 90 bp GCTGACTCGCTGTTCTGCTTGTTCTGGTTGGCATCATTTAGACAGTaGCTGCTACTGCTGCTGAGTTGGGTAGGCATGGTGCTGATGGAG +
Preference number: 2 (lower is better)
Translates to: ADSLFCLFWLASFRQ*LLLLLSWVGMVLME
Trigger: CTCCATCAGCACCATGCCTACCCAACTCAGCAGCAGTAGCAGCAACTGTCTAAATGATGCCAACCAGAACAAGCAGAACAGCGAGTCAGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR TCA 90 bp TTGGCATCATTTAGACAGTTGCTGCTACTGCTGCTGAGTTGGGTAGGCATGGTGTGGGGTGGCTTGCCATaGGGGTCATCTGGTGGTAAT +
Preference number: 2 (lower is better)
Translates to: LASFRQLLLLLLSWVGMVWGGLP*GSSGGN
Trigger: ATTACCACCAGATGACCCTCATGGCAAGCCACCCCA...CACCATGCCTACCCAACTCAGCAGCAGTAGCAGCAACTGTCTAAATGATGCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000160991.8
ENSMUST00000161056.8
3UTR-3UTR CCA 90 bp TCTTCCCAGGGAGGGCTTCACTGTATACCTCAGAACACTGTAAACAGGCCAGGAGCTGTCATTTGGAGTTaGCCATTGCCCAACCCCTCT +
Preference number: 2 (lower is better)
Translates to: SSQGGLHCIPQNTVNRPGAVIWS*PLPNPS
Trigger: AGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGC...TCCTGGCCTGTTTACAGTGTTCTGAGGTATACAGTGAAGCCCTCCCTGGGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGGATTCAAACCCAGAGTaGCTCCCCTCCCCTCTTTGG +
Preference number: 2 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWDSNPE*LPSPLW
Trigger: CCAAAGAGGGGAGGGGAGCCACTCTGGGTTTGAATC...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CCA 90 bp TCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATCTGTTCTGCTTGTTCTaGTTGGCATCATTTAGACAG +
Preference number: 2 (lower is better)
Translates to: SRSSLRSASCSCVSPSGDLFCLF*LASFRQ
Trigger: CTGTCTAAATGATGCCAACCAGAACAAGCAGAACAG...ATCCCCGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGCCTTTTCCTCCCAGGTaGCAGAATGGCAAACTCATC +
Preference number: 2 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRPFPPR*QNGKLI
Trigger: GATGAGTTTGCCATTCTGCCACCTGGGAGGAAAAGG...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CCA 90 bp AGTCTTGACCTTGCTCCGCTTATGAATGGTGATGGGGTTCACGGTGCTGCTCACCTGTTCTGCTTGTTCTaGTTGGCATCATTTAGACAG +
Preference number: 2 (lower is better)
Translates to: SLDLAPLMNGDGVHGAAHLFCLF*LASFRQ
Trigger: CTGTCTAAATGATGCCAACCAGAACAAGCAGAACAG...GTGAGCAGCACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR TCA 90 bp TTGACGAGCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGAACACTTTGGGACAATaGGAACAGACTAGACCCTCA +
Preference number: 2 (lower is better)
Translates to: LTSFMEESRGNSNPFSSQNTLGQ*EQTRPS
Trigger: TGAGGGTCTAGTCTGTTCTCATTGTCCCAAAGTGTT...CTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGCTCGTCAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR TCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGCTGGCAAGCGTCATGTaGACGAGTTTCTTTTTGAAT +
Preference number: 2 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWLASVM*TSFFLN
Trigger: ATTCAAAAAGAAACTCGTTCACATGACGCTTGCCAG...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CCA 90 bp TGCTCACAGCTGACTCGCTGTTCTGCTTGTTCTGGTTGGCATCATTTAGACAGTCTGTTCTGCTTGTTCTaGTTGGCATCATTTAGACAG +
Preference number: 2 (lower is better)
Translates to: CSQLTRCSACSGWHHLDSLFCLF*LASFRQ
Trigger: CTGTCTAAATGATGCCAACCAGAACAAGCAGAACAG...ACTGTCTAAATGATGCCAACCAGAACAAGCAGAACAGCGAGTCAGCTGTGAGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CCA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACATCCCAGGTGGCAGAATaGCAAACTCATCTTCTCAGA +
Preference number: 2 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTSQVAE*QTHLLR
Trigger: TCTGAGAAGATGAGTTTGCCATTCTGCCACCTGGGA...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CAA 90 bp AAAAAGCTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTaGGATTCACCCACAGTCTATTCAGGCAAGACGATGTCTACACAA +
Preference number: 2 (lower is better)
Translates to: KKLKMFGNINLAGPN*DSPTVYSGKTMSTQ
Trigger: TTGTGTAGACATCGTCTTGCCTGAATAGACTGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAGCTTTTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CAA 90 bp CAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCATGGACAGAGCCCGCTaGCGGCTCAGTCGTGGGGTC +
Preference number: 3 (lower is better)
Translates to: QLLLCQSKRGCWTQALSLMDRAR*RLSRGV
Trigger: GACCCCACGACTGAGCCGCAAGCGGGCTCTGTCCAT...GAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR CCA 72 bp TGTGGAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTaGCCACCAGCCGGTGTGGAGGAGCCCTGGGATCTC +
Preference number: 3 (lower is better)
Translates to: CGGCRWSLRVVC*PPAGVEEPWDL
Trigger: GAGATCCCAGGGCTCCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTCCACA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR GCA 72 bp AAGTGTGGAGGCTGCAGGTGGTCGCTCAGGGTTGTCTaGTGGCCACCAGCCGGTGTGGAGGAGCCCTGGGAT +
Preference number: 3 (lower is better)
Translates to: KCGGCRWSLRVV*WPPAGVEEPWD
Trigger: ATCCCAGGGCTCCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTCCACACTT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CAA 90 bp AGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGACCTTGCTCCGCTTAATGGACAGAGCCCGCTaGCGGCTCAGTCGTGGGGTC +
Preference number: 3 (lower is better)
Translates to: SGDAGRRPSASVLTLLRLMDRAR*RLSRGV
Trigger: GACCCCACGACTGAGCCGCAAGCGGGCTCTGTCCAT...TAAGCGGAGCAAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR TCA 72 bp ATGGGGGTTCACGTAGGGGTGGTGGGCGCTGAAGGGTaGCTCTCCAGGGCCAGCAGGGTGTGGAGAAAGTCG +
Preference number: 3 (lower is better)
Translates to: MGVHVGVVGAEG*LSRASRVWRKS
Trigger: CGACTTTCTCCACACCCTGCTGGCCCTGGAGAGTCACCCTTCAGCGCCCACCACCCCTACGTGAACCCCCAT
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160991.8
3UTR CCA 72 bp AGAGGTCAGGGGACCAGAAAGTGTGGAGGCTGCAGGTaGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGT +
Preference number: 3 (lower is better)
Translates to: RGQGTRKCGGCR*SLRVVCWPPAG
Trigger: ACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTCCACACTTTCTGGTCCCCTGACCTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 72 bp GGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTaGACGCAGGCCCTCAGCCTCAGTCTTGACCTTGCT +
Preference number: 3 (lower is better)
Translates to: GQLLLCQSKRGC*TQALSLSLDLA
Trigger: AGCAAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CAA 90 bp TCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATATGGACAGAGCCCGCTaGCGGCTCAGTCGTGGGGTC +
Preference number: 3 (lower is better)
Translates to: SRSSLRSASCSCVSPSGDMDRAR*RLSRGV
Trigger: GACCCCACGACTGAGCCGCAAGCGGGCTCTGTCCAT...ATCCCCGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR GCA 72 bp GAGGGTAGAGGTCAGGGGACCAGAAAGTGTGGAGGCTaGAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCA +
Preference number: 3 (lower is better)
Translates to: EGRGQGTRKCGG*RWSLRVVCWPP
Trigger: TGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTCCACACTTTCTGGTCCCCTGACCTCTACCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR GCA 72 bp ATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATaGTGGACGCAGGCCCTCAGCCTCAGTCTTGACCTT +
Preference number: 3 (lower is better)
Translates to: IGQLLLCQSKRG*WTQALSLSLDL
Trigger: AAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCCGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR GCA 72 bp GGCCCCTGGCGGCAGAGATCATTGAGAGTGTGGGGCTaGTGTGCACAGACCGGAGGTAGTGCTCCATATGGG +
Preference number: 3 (lower is better)
Translates to: GPWRQRSLRVWG*CAQTGGSAPYG
Trigger: CCCATATGGAGCACTACCTCCGGTCTGTGCACAGCAGCCCCACACTCTCAATGATCTCTGCCGCCAGGGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000160991.8
3UTR GCA 72 bp TCATCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTaGTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGC +
Preference number: 3 (lower is better)
Translates to: SSLSRSSLRSAS*SCVSPSGDAGR
Trigger: GCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR CCA 72 bp GGCATGGTGCTGATGGAGGTGAGAGTCATGGGCTGCTaGGCCAAGAAGGTGGGTGAAGGCTGGATCAGGGGT +
Preference number: 3 (lower is better)
Translates to: GMVLMEVRVMGC*AKKVGEGWIRG
Trigger: ACCCCTGATCCAGCCTTCACCCACCTTCTTGGCCCAGCAGCCCATGACTCTCACCTCCATCAGCACCATGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR GCA 72 bp GTAGGCATGGTGCTGATGGAGGTGAGAGTCATGGGCTaGTGGGCCAAGAAGGTGGGTGAAGGCTGGATCAGG +
Preference number: 3 (lower is better)
Translates to: VGMVLMEVRVMG*WAKKVGEGWIR
Trigger: CCTGATCCAGCCTTCACCCACCTTCTTGGCCCAGCAGCCCATGACTCTCACCTCCATCAGCACCATGCCTAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CAA 90 bp TGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGACCTTGCTACTGCTGCTGAGTaGGGTAGGCATGGTGCTGAT +
Preference number: 3 (lower is better)
Translates to: CQSKRGCWTQALSLSLDLATAAE*GRHGAD
Trigger: ATCAGCACCATGCCTACCCAACTCAGCAGCAGTAGC...AAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CAA 90 bp TCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGCTACTGCTGCTGAGTaGGGTAGGCATGGTGCTGAT +
Preference number: 3 (lower is better)
Translates to: SLSRSSLRSASCSCVSPSATAAE*GRHGAD
Trigger: ATCAGCACCATGCCTACCCAACTCAGCAGCAGTAGC...GCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR TCA 72 bp CCTCCTGCTTACAGTCATCCCTGTCCAGGTCTTCCTTaGGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCG +
Preference number: 3 (lower is better)
Translates to: PPAYSHPCPGLP*DRPAAPVSVQA
Trigger: CGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTGTAAGCAGGAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR TCA 72 bp TCTCTTTCAGATGTTCGTGGGCCACATCAGCAGGGCTaGGGCCCCTGGCGGCAGAGATCATTGAGAGTGTGG +
Preference number: 3 (lower is better)
Translates to: SLSDVRGPHQQG*GPWRQRSLRVW
Trigger: CCACACTCTCAATGATCTCTGCCGCCAGGGGCCTCAGCCCTGCTGATGTGGCCCACGAACATCTGAAAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000160991.8
3UTR-3UTR CAA 90 bp GGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGACCTTGCTCCGCTTATGAATGCTACTGCTGCTGAGTaGGGTAGGCATGGTGCTGAT +
Preference number: 3 (lower is better)
Translates to: GCWTQALSLSLDLAPLMNATAAE*GRHGAD
Trigger: ATCAGCACCATGCCTACCCAACTCAGCAGCAGTAGC...ATTCATAAGCGGAGCAAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR TCA 72 bp AGGCCCTCAGCCTCAGTCTTGACCTTGCTCCGCTTATaGATGGTGATGGGGTTCACGGTGCTGCTCACAGCT +
Preference number: 3 (lower is better)
Translates to: RPSASVLTLLRL*MVMGFTVLLTA
Trigger: AGCTGTGAGCAGCACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACTGAGGCTGAGGGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR TCA 72 bp GGTGGTGGAGGCATGGGTTCACCCTGCAGTGCGCTCTaGCTGACTCTTTTTGGAGTCAGTTTCCACATGCCA +
Preference number: 3 (lower is better)
Translates to: GGGGMGSPCSAL*LTLFGVSFHMP
Trigger: TGGCATGTGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATGCCTCCACCACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR TCA 72 bp CAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATaGGTCCACACCACAAGAGCCAGAGACCCAGGGGCA +
Preference number: 3 (lower is better)
Translates to: QTEWEARVYVRQ*VHTTRARDPGA
Trigger: TGCCCCTGGGTCTCTGGCTCTTGTGGTGTGGACTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CAA 90 bp GCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGATTTGGAGTTGGCCATaGCCCAACCCCTCTCAGGCC +
Preference number: 3 (lower is better)
Translates to: ASWKNPGETVIPFPPRWQIWSWP*PNPSQA
Trigger: GGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAAT...CTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CAA 90 bp TCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGTTCTGCTTGTTCTGGTaGGCATCATTTAGACAGTTG +
Preference number: 3 (lower is better)
Translates to: SCVSPSGDAGRRPSASVLFCLFW*ASFRQL
Trigger: CAACTGTCTAAATGATGCCAACCAGAACAAGCAGAA...CAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR TCA 72 bp GCTCAGTCGTGGGGTCACACGTGGACTAGAGAATCGTaGTGCATCCACAGGGTTGAGGTAGTCATGGAGATG +
Preference number: 3 (lower is better)
Translates to: AQSWGHTWTRES*CIHRVEVVMEM
Trigger: CATCTCCATGACTACCTCAACCCTGTGGATGCATCACGATTCTCTAGTCCACGTGTGACCCCACGACTGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000160991.8
ENSMUST00000161056.8
3UTR-3UTR CAA 90 bp GCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGAGCTGTCATTTGGAGTaGGCCATTGCCCAACCCCTC +
Preference number: 3 (lower is better)
Translates to: ASWKNPGETVIPFPPRWQSCHLE*AIAQPL
Trigger: GAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCT...CTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CAA 90 bp CAGTCATCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTGCATCATTTAGACAGTaGCTGCTACTGCTGCTGAGT +
Preference number: 3 (lower is better)
Translates to: QSSLSRSSLRSASCSCVSASFRQ*LLLLLS
Trigger: ACTCAGCAGCAGTAGCAGCAACTGTCTAAATGATGC...ACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR CCA 72 bp GAAATAGGAGCGGGTAAACATATGACTTCCTTTTCCTaGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTAT +
Preference number: 3 (lower is better)
Translates to: EIGAGKHMTSFS*GRPLPPRGPAY
Trigger: ATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTCATATGTTTACCCGCTCCTATTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 72 bp TGGCCCAGAGCTGTCATTTGGAGTTGGTCCTGTCTCTaGGTTGTAAACAGAGAAGTTTGCTGCCCTGGGACA +
Preference number: 3 (lower is better)
Translates to: WPRAVIWSWSCL*VVNREVCCPGT
Trigger: TGTCCCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATGACAGCTCTGGGCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CAA 90 bp CTTACAGTCATCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTGCATCATTTAGACAGTaGCTGCTACTGCTGCTGAGT +
Preference number: 3 (lower is better)
Translates to: LTVIPVQVFLEIGQLLLCASFRQ*LLLLLS
Trigger: ACTCAGCAGCAGTAGCAGCAACTGTCTAAATGATGC...ACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTGTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR-3UTR CAA 90 bp TCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGATTCTGCTTGTTCTGGTaGGCATCATTTAGACAGTTG +
Preference number: 3 (lower is better)
Translates to: SSLRSASCSCVSPSGDAGFCLFW*ASFRQL
Trigger: CAACTGTCTAAATGATGCCAACCAGAACAAGCAGAA...TCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR TCA 72 bp ATGAATGGTGATGGGGTTCACGGTGCTGCTCACAGCTaGCTCGCTGTTCTGCTTGTTCTGGTTGGCATCATT +
Preference number: 3 (lower is better)
Translates to: MNGDGVHGAAHS*LAVLLVLVGII
Trigger: AATGATGCCAACCAGAACAAGCAGAACAGCGAGTCAGCTGTGAGCAGCACCGTGAACCCCATCACCATTCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
3UTR GCA 72 bp AGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTaGTGCCCTGGGACACAGAGGGTCCAGACTCTGTTA +
Preference number: 3 (lower is better)
Translates to: SWSCLWVVNREV*CPGTQRVQTLL
Trigger: TAACAGAGTCTGGACCCTCTGTGTCCCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 72 bp ACCTTCCGCTCAACCACAAACCATGCATGTCATCACTaGTCCATGCCAAATAACCTGGAGAGGAGGGTAGAG +
Preference number: 3 (lower is better)
Translates to: TFRSTTNHACHH*SMPNNLERRVE
Trigger: CTCTACCCTCCTCTCCAGGTTATTTGGCATGGACCAGTGATGACATGCATGGTTTGTGGTTGAGCGGAAGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 72 bp GGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTaGAGTCAGTTTCCACATGCCATTTCTTATCTGGGG +
Preference number: 3 (lower is better)
Translates to: GFTLQCALTDSF*SQFPHAISYLG
Trigger: CCCCAGATAAGAAATGGCATGTGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR TCA 72 bp TTGGAAAGCCCCTGGCCAAAGTTCTCTCTCATTAGCTaGATGATAGAGGCAAAGGAGCCAGAACCCGGGAAT +
Preference number: 3 (lower is better)
Translates to: LESPWPKFSLIS*MIEAKEPEPGN
Trigger: ATTCCCGGGTTCTGGCTCCTTTGCCTCTATCATTCAGCTAATGAGAGAGAACTTTGGCCAGGGGCTTTCCAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CAA 90 bp GCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATGGTCTCAGATTCAAACCTCTTTGGGCGTGTACTaGGAAAGCCCCTGGCCAAAG +
Preference number: 3 (lower is better)
Translates to: ANSSSQSREYPAWSQIQTSLGVY*ESPWPK
Trigger: CTTTGGCCAGGGGCTTTCCAAGTACACGCCCAAAGA...GGTTTGAATCTGAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR TCA 72 bp CAACCCCTCTCAGGCCTAGTTAACACTTTGGGACAATaGGAACAGACTAGACCCTCATATTCCAAGGGGCTA +
Preference number: 3 (lower is better)
Translates to: QPLSGLVNTLGQ*EQTRPSYSKGL
Trigger: TAGCCCCTTGGAATATGAGGGTCTAGTCTGTTCTCATTGTCCCAAAGTGTTAACTAGGCCTGAGAGGGGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR TCA 72 bp ACTCTACCTAAGGAAATGGAGATGTTAGCAAGTAACTaGGGAGACTACAATATCCCGGGGGATGCGCCTTTC +
Preference number: 3 (lower is better)
Translates to: TLPKEMEMLASN*GDYNIPGDAPF
Trigger: GAAAGGCGCATCCCCCGGGATATTGTAGTCTCCTCAGTTACTTGCTAACATCTCCATTTCCTTAGGTAGAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CAA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACAGCTCCCCTCCCCTCTTaGGGCGTGTACTTGGAAAGC +
Preference number: 3 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTAPLPS*GVYLES
Trigger: GCTTTCCAAGTACACGCCCAAAGAGGGGAGGGGAGC...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR TCA 72 bp GAATCTCACAAACACCAGAGGCTGGCAAGCGTCATGTaGACGAGTTTCTTTTTGAATAAGACTTTGGGTGTC +
Preference number: 3 (lower is better)
Translates to: ESHKHQRLASVM*TSFFLNKTLGV
Trigger: GACACCCAAAGTCTTATTCAAAAAGAAACTCGTTCACATGACGCTTGCCAGCCTCTGGTGTTTGTGAGATTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR-3UTR CAA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACAGCCCAGAGCTGTCATTaGGAGTTGGCCATTGCCCAA +
Preference number: 3 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTAQSCH*ELAIAQ
Trigger: TTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGC...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CCA 72 bp GAAAAAGCTAAAAATGTTTGGCAATATAAATTTGGCTaGACCAAATTTGGATTCACCCACAGTCTATTCAGG +
Preference number: 3 (lower is better)
Translates to: EKAKNVWQYKFG*TKFGFTHSLFR
Trigger: CCTGAATAGACTGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAGCTTTTTC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCGCCGGCAGGAGCTGCTaGGGAACTCCGTGGGCGGCT +
Preference number: 4 (lower is better)
Translates to: QLLLCQSKRGCWTQALSLAGRSC*GTPWAA
Trigger: AGCCGCCCACGGAGTTCCTCAGCAGCTCCTGCCGGC...GAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159839.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR TCA 90 bp AGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGCCGGCAGGAGCTGCTaGGGAACTCCGTGGGCGGCT +
Preference number: 4 (lower is better)
Translates to: SCSCVSPSGDAGRRPSASAGRSC*GTPWAA
Trigger: AGCCGCCCACGGAGTTCCTCAGCAGCTCCTGCCGGC...TGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000159839.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR CCA 90 bp GAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGGCGGTGGTCCACCTGTaGCCGCTGCGTACTTGGCAC +
Preference number: 4 (lower is better)
Translates to: EAAGGRSGLSAGHQPVWRAVVHL*PLRTWH
Trigger: GTGCCAAGTACGCAGCGGCCACAGGTGGACCACCGC...CCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp GAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGGTCGAGGCTGGCATCTaGGAGCGGGGAGATGGACAG +
Preference number: 4 (lower is better)
Translates to: EAAGGRSGLSAGHQPVWRVEAGI*ERGDGQ
Trigger: CTGTCCATCTCCCCGCTCTCAGATGCCAGCCTCGAC...CCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp GAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGGCCAGGCTGATGGGATaGCAGAAGGTTGGAGCCCTG +
Preference number: 4 (lower is better)
Translates to: EAAGGRSGLSAGHQPVWRARLMG*QKVGAL
Trigger: CAGGGCTCCAACCTTCTGTCATCCCATCAGCCTGGC...CCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CAA 72 bp CCAGAAAGTGTGGAGGCTGCAGGTGGTCGCTCAGGGTaGTCTGCTGGCCACCAGCCGGTGTGGAGGAGCCCT +
Preference number: 4 (lower is better)
Translates to: PESVEAAGGRSG*SAGHQPVWRSP
Trigger: AGGGCTCCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTCCACACTTTCTGG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp TCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGCCGGCAGGAGCTGCTaGGGAACTCCGTGGGCGGCT +
Preference number: 4 (lower is better)
Translates to: SLSRSSLRSASCSCVSPSAGRSC*GTPWAA
Trigger: AGCCGCCCACGGAGTTCCTCAGCAGCTCCTGCCGGC...GCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159839.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR GCA 90 bp GGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCTTCTTTCTTCTCCAGTaGAGGGGCTGGGGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: GQLLLCQSKRGCWTQALSFFLLQ*RGWGRS
Trigger: ACTTCTGCCCCAGCCCCTGCACTGGAGAAGAAAGAA...GCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR CCA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACCTGAGAGCGGGGAGATaGACAGAGCCCGCTTGCGGC +
Preference number: 4 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHLRAGR*TEPACG
Trigger: GCCGCAAGCGGGCTCTGTCCATCTCCCCGCTCTCAG...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACTGGCCCCAGTGGATGTaGGCAGGCACCAGGAAGTGC +
Preference number: 4 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHWPQWM*AGTRKC
Trigger: GCACTTCCTGGTGCCTGCCCACATCCACTGGGGCCA...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAATCGCTGCCACGCCGTaGCCCCAGTGGATGTGGGCA +
Preference number: 4 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLIAATP*PQWMWA
Trigger: TGCCCACATCCACTGGGGCCACGGCGTGGCAGCGAT...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTAGGGGGCTCCAGGAGCTaGGAGTCCACGGTGCTAGAC +
Preference number: 4 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLGGSRS*ESTVLD
Trigger: GTCTAGCACCGTGGACTCCCAGCTCCTGGAGCCCCC...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACGTGGCTGGGCTTGGCTaGCATATTGCTGCAGGAGGG +
Preference number: 4 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHVAGLG*HIAAGG
Trigger: CCCTCCTGCAGCAATATGGCAGCCAAGCCCAGCCAC...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACACTGGCTGGCTTCACTaGAGCGCCGAGAGGCATCTG +
Preference number: 4 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHTGWLH*SAERHL
Trigger: CAGATGCCTCTCGGCGCTCCAGTGAAGCCAGCCAGT...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCAGCCGCACAGGGTCGCTaGCCCGCCGTGTGCTGCTGT +
Preference number: 4 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPAAQGR*PAVCCC
Trigger: ACAGCAGCACACGGCGGGCCAGCGACCCTGTGCGGC...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACCTGTCTACGCTGGGGTaGCTCTGTACGTGCAGGCCA +
Preference number: 4 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHLSTLG*LCTCRP
Trigger: TGGCCTGCACGTACAGAGCCACCCCAGCGTAGACAG...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTAGGAGGTGGCTTCACCTaGGTAGGCAGGGCATCCACG +
Preference number: 4 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLGGGFT*VGRAST
Trigger: CGTGGATGCCCTGCCTACCCAGGTGAAGCCACCTCC...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CAA 72 bp GCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTaGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTA +
Preference number: 4 (lower is better)
Translates to: ARRPLGMAQSCH*ELAIAQPLSGL
Trigger: TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGGCGGCAGAGATCATTaGGAGTGTGGGGCTGCTGTG +
Preference number: 4 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLGGRDH*ECGAAV
Trigger: CACAGCAGCCCCACACTCTCAATGATCTCTGCCGCC...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp GAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGGGATGTGTTCATTGTTaGTATGATGCACCAGCTGCT +
Preference number: 4 (lower is better)
Translates to: EAAGGRSGLSAGHQPVWRGCVHC*YDAPAA
Trigger: AGCAGCTGGTGCATCATATCAACAATGAACACATCC...CCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp GAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGAATCCTTCAGTGACTTaGGCTTCTCTCTCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: EAAGGRSGLSAGHQPVWRNPSVT*ASLSSA
Trigger: AGCTGAAGAGAGAGAAGCTCAAGTCACTGAAGGATT...CCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTACTGGGTCGGGGAAGCTaGTGTCCTCCAAGAGACCAC +
Preference number: 4 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLLGRGS*CPPRDH
Trigger: GTGGTCTCTTGGAGGACAGCAGCTTCCCCGACCCAG...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCCCAAGAGACCACTCTTaGCTTCTTTCTTCTCCAGTG +
Preference number: 4 (lower is better)
Translates to: QLLLCQSKRGCWTQALSLPRDHS*LLSSPV
Trigger: CACTGGAGAAGAAAGAAGCCAAGAGTGGTCTCTTGG...GAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTGACACAGGAGCAGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR CCA 90 bp CCAAGCGGGGATGCTGGACGCAGGCCCTCAGCCTCAGTCTTGACCTTGCTCCGCCCAAGAGACCACTCTTaGCTTCTTTCTTCTCCAGTG +
Preference number: 4 (lower is better)
Translates to: PSGDAGRRPSASVLTLLRPRDHS*LLSSPV
Trigger: CACTGGAGAAGAAAGAAGCCAAGAGTGGTCTCTTGG...GCGGAGCAAGGTCAAGACTGAGGCTGAGGGCCTGCGTCCAGCATCCCCGCTTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR CCA 90 bp TCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCACAGGCCTTTTTCCCTaGGTCGGGGAAGCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: SLSRSSLRSASCSCVSPSTGLFP*VGEAAV
Trigger: GACAGCAGCTTCCCCGACCCAGGGAAAAAGGCCTGT...GCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR CCA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACACGGTGCTAGACACCTaGTTGACTCCCGGTGAAGGC +
Preference number: 4 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHTVLDT*LTPGEG
Trigger: GCCTTCACCGGGAGTCAACCAGGTGTCTAGCACCGT...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCATGTGTGTCCAAAGGCTaGGCCCAGGCCCCGCTGCTG +
Preference number: 4 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPCVSKG*AQAPLL
Trigger: CAGCAGCGGGGCCTGGGCTCAGCCTTTGGACACACA...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACGCATGTTGCTCTTGTTaGGGTTGGAGGAGGGGCTGT +
Preference number: 4 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHACCSC*GWRRGC
Trigger: ACAGCCCCTCCTCCAACCTCAACAAGAGCAACATGC...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTTAAAACATCTGCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGCAGTCCAAGCGGGGATaGTGGACGCAGGCCCTCAGC +
Preference number: 4 (lower is better)
Translates to: LKTSARRPLGMAQSCHLEQSKRG*WTQALS
Trigger: GCTGAGGGCCTGCGTCCAGCATCCCCGCTTGGACTG...CTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAGATGTTTTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTACTCCTTGGTGCAGTCTaGCCAGTGGCAGTTGGTCTC +
Preference number: 4 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLLLGAV*PVAVGL
Trigger: GAGACCAACTGCCACTGGGCAGACTGCACCAAGGAG...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp TCTTCCCAGGGAGGGCTTCACTGTATACCTCAGAACACTGTAAACAGGCCAGGACATTGTTGGGGGCACTaGCCAGGGGAGAGGGCTCGC +
Preference number: 4 (lower is better)
Translates to: SSQGGLHCIPQNTVNRPGHCWGH*PGERAR
Trigger: GCGAGCCCTCTCCCCTGGGCAGTGCCCCCAACAATG...TCCTGGCCTGTTTACAGTGTTCTGAGGTATACAGTGAAGCCCTCCCTGGGAAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACCTGTCTCTTCGTTCCTaGAGCTGGCTCAGCATCGTC +
Preference number: 4 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHLSLRS*SWLSIV
Trigger: GACGATGCTGAGCCAGCTGCAGGAACGAAGAGACAG...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCACGGCAGCTGCTAGCCTaGGGTGGCCTTGTAGCCCAG +
Preference number: 4 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPRQLLA*GGLVAQ
Trigger: CTGGGCTACAAGGCCACCGCAGGCTAGCAGCTGCCG...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAACAGGCCTTTTTCCCTaGGTCGGGGAAGCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLTGLFP*VGEAAV
Trigger: GACAGCAGCTTCCCCGACCCAGGGAAAAAGGCCTGT...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp TCTTCCCAGGGAGGGCTTCACTGTATACCTCAGAACACTGTAAACAGGCCAGGATGGCCTGCGGGCTCATaGCCGCACTCATACCCAGGC +
Preference number: 4 (lower is better)
Translates to: SSQGGLHCIPQNTVNRPGWPAGS*PHSYPG
Trigger: GCCTGGGTATGAGTGCGGCCATGAGCCCGCAGGCCA...TCCTGGCCTGTTTACAGTGTTCTGAGGTATACAGTGAAGCCCTCCCTGGGAAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGTGTGGTTGTGGCGGCTaGGGCTGCACGGCTGGGCAG +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWCGCGG*GCTAGQ
Trigger: CTGCCCAGCCGTGCAGCCCCAGCCGCCACAACCACA...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CAA 72 bp AGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGTaGGCCATTGCCCAACCCCTCTCAGGCCTAGTTAAC +
Preference number: 4 (lower is better)
Translates to: RPLGMAQSCHLE*AIAQPLSGLVN
Trigger: GTTAACTAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp TTGACGAGCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGCCACATCAGCAGGGCTaGGGCCCCTGGCGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: LTSFMEESRGNSNPFSSQPHQQG*GPWRQR
Trigger: TCTCTGCCGCCAGGGGCCTCAGCCCTGCTGATGTGG...CTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGCTCGTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CTTAAAACATCTGCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGCGTGTAGCTCCCTCTTaGTGCAGAGGGGGCTCCTCG +
Preference number: 4 (lower is better)
Translates to: LKTSARRPLGMAQSCHLERVAPS*CRGGSS
Trigger: CGAGGAGCCCCCTCTGCATCAAGAGGGAGCTACACG...CTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAGATGTTTTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGCACCGCAGCCAGGGATaGATTGGGGACCCCGTGCTC +
Preference number: 4 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRHRSQG*IGDPVL
Trigger: GAGCACGGGGTCCCCAATTCATCCCTGGCTGCGGTG...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACAGGCTGGATACTGTCTaGGCAAGCTTGTGGTTGTGG +
Preference number: 4 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHRLDTV*ASLWLW
Trigger: CCACAACCACAAGCTTGCTCAGACAGTATCCAGCCT...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp GCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGGCTTCTGCTCTCTCGTaGAGGCCTGCCAGCGGCACA +
Preference number: 4 (lower is better)
Translates to: ASWKNPGETVIPFPPRWQASALS*RPASGT
Trigger: TGTGCCGCTGGCAGGCCTGCACGAGAGAGCAGAAGC...CTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp GCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGGAGGCAGCTTGGTGTTaGGGGTGTGTGGAGCTGGGC +
Preference number: 4 (lower is better)
Translates to: ASWKNPGETVIPFPPRWQEAAWC*GCVELG
Trigger: GCCCAGCTCCACACACCCGCAACACCAAGCTGCCTC...CTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGAGGGGTGGCCGAGGCTaGATGAGACCAAAGCCCGCG +
Preference number: 4 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRRGGRG*MRPKPA
Trigger: CGCGGGCTTTGGTCTCATGCAGCCTCGGCCACCCCT...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CTTACAGTCATCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTACAGGCCTTTTTCCCTaGGTCGGGGAAGCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: LTVIPVQVFLEIGQLLLCTGLFP*VGEAAV
Trigger: GACAGCAGCTTCCCCGACCCAGGGAAAAAGGCCTGT...ACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTGTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR CCA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTACCATGGCTTGGCCAGTaGTCCTGGCATACAACTGCT +
Preference number: 4 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLPWLGQ*SWHTTA
Trigger: AGCAGTTGTATGCCAGGACCACTGGCCAAGCCATGG...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTATCCATGAAGCCAGGCTaGTGGGATGACAGAAGGTTG +
Preference number: 4 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLSMKPG*WDDRRL
Trigger: CAACCTTCTGTCATCCCATCAGCCTGGCTTCATGGA...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCACTGGTTGACTCCCGGTaGAGGCAAAGGCTCAGGCTG +
Preference number: 4 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPLVDSR*RQRLRL
Trigger: CAGCCTGAGCCTTTGCCTTCACCGGGAGTCAACCAG...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTATTCTTTCTTCTCCAGTaGAGGGGCTGGGGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLFFLLQ*RGWGRS
Trigger: ACTTCTGCCCCAGCCCCTGCACTGGAGAAGAAAGAA...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTATGTCATACTCCTTGGTaGAGTCTGCCCAGTGGCAGT +
Preference number: 4 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLCHTPW*SLPSGS
Trigger: ACTGCCACTGGGCAGACTGCACCAAGGAGTATGACA...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGTCTCTCGTGCAGGCCTaGCAGCGGCACACGAACTCC +
Preference number: 4 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRSLVQA*QRHTNS
Trigger: GGAGTTCGTGTGCCGCTGGCAGGCCTGCACGAGAGA...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTACTGTGTACCTCTTGGTaGAGCCTGGGATCTTGCAGA +
Preference number: 4 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLLCTSW*SLGSCR
Trigger: TCTGCAAGATCCCAGGCTGCACCAAGAGGTACACAG...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGCAGGCACTGACTGCCTaGAGCTGGCTGTCGAGGCTG +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWQALTA*SWLSRL
Trigger: CAGCCTCGACAGCCAGCTGCAGGCAGTCAGTGCCTG...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GGCTGCTGTGCACAGACCGGAGGTAGTGCTCCATATGGGGGTTCACGTAGGGGTCCAAGAGACCACTCTTaGCTTCTTTCTTCTCCAGTG +
Preference number: 4 (lower is better)
Translates to: GCCAQTGGSAPYGGSRRGPRDHS*LLSSPV
Trigger: CACTGGAGAAGAAAGAAGCCAAGAGTGGTCTCTTGG...ACCCCTACGTGAACCCCCATATGGAGCACTACCTCCGGTCTGTGCACAGCAGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000160991.8
CDS-3UTR CCA 90 bp AAAAGTGAAGGCTGGGCTGAGGGCACCAGCAGACAGATGTCCATAAGAGCCACTACAGGCCTTTTTCCCTaGGTCGGGGAAGCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: KSEGWAEGTSRQMSIRATTGLFP*VGEAAV
Trigger: GACAGCAGCTTCCCCGACCCAGGGAAAAAGGCCTGT...AGTGGCTCTTATGGACATCTGTCTGCTGGTGCCCTCAGCCCAGCCTTCACTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
CDS-3UTR CCA 90 bp CTCAGCCTCAGTCTTGACCTTGCTCCGCTTATGAATGGTGATGGGGTTCACGGTACAGGCCTTTTTCCCTaGGTCGGGGAAGCTGCTGTC +
Preference number: 4 (lower is better)
Translates to: LSLSLDLAPLMNGDGVHGTGLFP*VGEAAV
Trigger: GACAGCAGCTTCCCCGACCCAGGGAAAAAGGCCTGT...ACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACTGAGGCTGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR CCA 90 bp CAGTCATCCCTGTCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTTGGTACCTTCCCTCCTaGTGTCTCATGTCAATCGGC +
Preference number: 4 (lower is better)
Translates to: QSSLSRSSLRSASCSCVSWYLPS*CLMSIG
Trigger: GCCGATTGACATGAGACACCAGGAGGGAAGGTACCA...ACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159839.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR CCA 90 bp CTTAAAACATCTGCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGGCTGGGCCAAGAAGGTaGGTGAAGGCTGGATCAGGG +
Preference number: 4 (lower is better)
Translates to: LKTSARRPLGMAQSCHLEAGPRR*VKAGSG
Trigger: CCCTGATCCAGCCTTCACCCACCTTCTTGGCCCAGC...CTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAGATGTTTTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CTTAAAACATCTGCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGCAGTCCTCCACAGTGTaGCTGGTGCTACTGGCCTCC +
Preference number: 4 (lower is better)
Translates to: LKTSARRPLGMAQSCHLEQSSTV*LVLLAS
Trigger: GGAGGCCAGTAGCACCAGCCACACTGTGGAGGACTG...CTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAGATGTTTTAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGAGGAGTCTGCTGAGCTaGCGTTGTGCGGGCGTAGGC +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWRSLLS*RCAGVG
Trigger: GCCTACGCCCGCACAACGCCAGCTCAGCAGACTCCT...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp TTGACGAGCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGCGCCACTGCACTGGCTaGCTTCACTGGAGCGCCGAG +
Preference number: 4 (lower is better)
Translates to: LTSFMEESRGNSNPFSSQRHCTG*LHWSAE
Trigger: CTCGGCGCTCCAGTGAAGCCAGCCAGTGCAGTGGCG...CTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGCTCGTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTACTGTACCACATCATCTaGCAGCACCAGCTCATCCTC +
Preference number: 4 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLLYHII*QHQLIL
Trigger: GAGGATGAGCTGGTGCTGCCAGATGATGTGGTACAG...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACTATCAAGGAGATATCTaGGATGACAGGGCTGCCACT +
Preference number: 4 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHYQGDI*DDRAAT
Trigger: AGTGGCAGCCCTGTCATCTCAGATATCTCCTTGATA...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCAAGAGCCACTGGCTGCTaGGCTGCTCCTGGAGTTGTT +
Preference number: 4 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPRATGC*AAPGVV
Trigger: AACAACTCCAGGAGCAGCTCAGCAGCCAGTGGCTCT...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp GCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGTGTCCAGGTCTTCCTTaGGATCGGCCAGCTGCTCCT +
Preference number: 4 (lower is better)
Translates to: ASWKNPGETVIPFPPRWQCPGLP*DRPAAP
Trigger: AGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACA...CTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCACCAGGACAGAACCATTaGCTGGAAGGGGAGGCAGCT +
Preference number: 4 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPPGQNH*LEGEAA
Trigger: AGCTGCCTCCCCTTCCAGTCAATGGTTCTGTCCTGG...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCATCCCCGGCATCTCCATaGCACTGTCATTGTTGGGGG +
Preference number: 4 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPSPASP*HCHCWG
Trigger: CCCCCAACAATGACAGTGGCATGGAGATGCCGGGGA...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp TCTTCCCAGGGAGGGCTTCACTGTATACCTCAGAACACTGTAAACAGGCCAGGAATGTGTTTGCGCAGCTaGAGGCCACCAGTGGAGGGT +
Preference number: 4 (lower is better)
Translates to: SSQGGLHCIPQNTVNRPGMCLRS*RPPVEG
Trigger: ACCCTCCACTGGTGGCCTGCAGCTGCGCAAACACAT...TCCTGGCCTGTTTACAGTGTTCTGAGGTATACAGTGAAGCCCTCCCTGGGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTTAAAACATCTGCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGCGCAGGTTGTACTGCTaGGCAGGTGTGAGGTTGAGC +
Preference number: 4 (lower is better)
Translates to: LKTSARRPLGMAQSCHLERRLYC*AGVRLS
Trigger: GCTCAACCTCACACCTGCGCAGCAGTACAACCTGCG...CTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAGATGTTTTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGCTTGGCTGCCATATTaGTGCAGGAGGGAGAAAACT +
Preference number: 4 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLAWLPY*CRREKT
Trigger: AGTTTTCTCCCTCCTGCAGCAATATGGCAGCCAAGC...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp TCCAGGTCTTCCTTGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATCCAAGAGACCACTCTTaGCTTCTTTCTTCTCCAGTG +
Preference number: 4 (lower is better)
Translates to: SRSSLRSASCSCVSPSGDPRDHS*LLSSPV
Trigger: CACTGGAGAAGAAAGAAGCCAAGAGTGGTCTCTTGG...ATCCCCGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR CCA 90 bp CTTAAAACATCTGCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGAATAGTCTGAAGGGTTaGTGCCTGGGGCTGCGAGGC +
Preference number: 4 (lower is better)
Translates to: LKTSARRPLGMAQSCHLENSLKG*CLGLRG
Trigger: GCCTCGCAGCCCCAGGCACCAACCCTTCAGACTATT...CTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAGATGTTTTAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGGTCCATAAGAGCCACTaGCTGCTGAGCTGCTCCTGG +
Preference number: 4 (lower is better)
Translates to: ASWKNPGETVIPFPPRWQVHKSH*LLSCSW
Trigger: CCAGGAGCAGCTCAGCAGCCAGTGGCTCTTATGGAC...CTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATGGTCTCAGATTCAAACCACTGGGCCCCGGGGCTaGACTGACAAAGCCCGGAGC +
Preference number: 4 (lower is better)
Translates to: ANSSSQSREYPAWSQIQTTGPRG*TDKARS
Trigger: GCTCCGGGCTTTGTCAGTCCAGCCCCGGGGCCCAGT...GGTTTGAATCTGAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGTGCCACTGTCATTGTTaGGGGCACTGCCCAGGGGAG +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWCHCHC*GHCPGE
Trigger: CTCCCCTGGGCAGTGCCCCCAACAATGACAGTGGCA...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGGGAGTCCCAGGTGGCTaGGCTTGGCTGCCATATTGC +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWGVPGG*AWLPYC
Trigger: GCAATATGGCAGCCAAGCCCAGCCACCTGGGACTCC...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGCAGCCAGGGATGAATTaGGGACCCCGTGCTCCCGTT +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWQPGMN*GPRAPV
Trigger: AACGGGAGCACGGGGTCCCCAATTCATCCCTGGCTG...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGCTGGTGGTAATAGTCTaGAGGGTTGGTGCCTGGGGC +
Preference number: 4 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRLVVIV*RVGAWG
Trigger: GCCCCAGGCACCAACCCTTCAGACTATTACCACCAG...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGGTGCTTGGCGCGGTCTaGGGCATTGGAGAAGGCTTT +
Preference number: 4 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRVLGAV*GIGEGF
Trigger: AAAGCCTTCTCCAATGCCTCAGACCGCGCCAAGCAC...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCAGGGTGTGGTGAGGCGTaGGGAATTCTGGGAGAGATT +
Preference number: 4 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPGCGEA*GILGEI
Trigger: AATCTCTCCCAGAATTCCTCACGCCTCACCACACCC...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTCAGCCTCAGTCTTGACCTTGCTCCGCTTATGAATGGTGATGGGGTTCACGGTTTCTTTCTTCTCCAGTaGAGGGGCTGGGGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: LSLSLDLAPLMNGDGVHGFFLLQ*RGWGRS
Trigger: ACTTCTGCCCCAGCCCCTGCACTGGAGAAGAAAGAA...ACCGTGAACCCCATCACCATTCATAAGCGGAGCAAGGTCAAGACTGAGGCTGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR GCA 90 bp GCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGACACGTGTCAGCCAGTaGTGTCAGGTCTCCCAGACT +
Preference number: 4 (lower is better)
Translates to: ASWKNPGETVIPFPPRWQTRVSQ*CQVSQT
Trigger: AGTCTGGGAGACCTGACAGCACTGGCTGACACGTGT...CTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGGGACCACAGCCAGGTTaGTGTGAGGGAAAGGAGGTG +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWGPQPG*CEGKEV
Trigger: CACCTCCTTTCCCTCACAGCAACCTGGCTGTGGTCC...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTACCAAGAGACCACTCTTaGCTTCTTTCTTCTCCAGTG +
Preference number: 4 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLPRDHS*LLSSPV
Trigger: CACTGGAGAAGAAAGAAGCCAAGAGTGGTCTCTTGG...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGCCTCTTGGTGCAGCCTaGGATCTTGCAGATGTAGGG +
Preference number: 4 (lower is better)
Translates to: ASWKNPGETVIPFPPRWQPLGAA*DLADVG
Trigger: CCCTACATCTGCAAGATCCCAGGCTGCACCAAGAGG...CTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp TTGACGAGCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGAAGGGGAGGCAGCTTaGTGTTGCGGGTGTGTGGAG +
Preference number: 4 (lower is better)
Translates to: LTSFMEESRGNSNPFSSQEGEAA*CCGCVE
Trigger: CTCCACACACCCGCAACACCAAGCTGCCTCCCCTTC...CTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGCTCGTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATGGTCTCAGATTCAAACCGAGGTTGAGCAGCCCTaGGCCACCGCCACTGCACTG +
Preference number: 4 (lower is better)
Translates to: ANSSSQSREYPAWSQIQTEVEQP*ATATAL
Trigger: CAGTGCAGTGGCGGTGGCCCAGGGCTGCTCAACCTC...GGTTTGAATCTGAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp TTGACGAGCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGCTGACTGCCTGCAGCTaGCTGTCGAGGCTGTTGCGT +
Preference number: 4 (lower is better)
Translates to: LTSFMEESRGNSNPFSSQLTACS*LSRLLR
Trigger: ACGCAACAGCCTCGACAGCCAGCTGCAGGCAGTCAG...CTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGCTCGTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCACTTGGCCAGTGGTCCTaGCATACAACTGCTGTTGCC +
Preference number: 4 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPLGQWS*HTTAVA
Trigger: GGCAACAGCAGTTGTATGCCAGGACCACTGGCCAAG...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CAA 72 bp AGACCCAGGGGCATGGCCCAGAGCTGTCATTTGGAGTaGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTG +
Preference number: 4 (lower is better)
Translates to: RPRGMAQSCHLE*VLSLGCKQRSL
Trigger: CAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATGACAGCTCTGGGCCATGCCCCTGGGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGTGGGGTGGCTTGCCATaGGGGTCATCTGGTGGTAAT +
Preference number: 4 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRWGGLP*GSSGGN
Trigger: ATTACCACCAGATGACCCTCATGGCAAGCCACCCCA...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp TTGACGAGCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGACAGCCAGGTTGCTGTaGGGGAAAGGAGGTGGCTTC +
Preference number: 4 (lower is better)
Translates to: LTSFMEESRGNSNPFSSQTARLL*GKGGGF
Trigger: GAAGCCACCTCCTTTCCCTCACAGCAACCTGGCTGT...CTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGCTCGTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACGATCACCATCATCCATaGTGGCATCAAAGTCAATCT +
Preference number: 4 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHDHHHP*WHQSQS
Trigger: AGATTGACTTTGATGCCATCATGGATGATGGTGATC...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGTGGACAGTCTTCACATaGTTGCGGAGTGAGCTGGGG +
Preference number: 4 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRWTVFT*LRSELG
Trigger: CCCCAGCTCACTCCGCAAGCATGTGAAGACTGTCCA...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CTTAAAACATCTGCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGACAGGATTGATGGGGTaGGGAAAAGTGAAGGCTGGG +
Preference number: 4 (lower is better)
Translates to: LKTSARRPLGMAQSCHLETGLMG*GKVKAG
Trigger: CCCAGCCTTCACTTTTCCCCACCCCATCAATCCTGT...CTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAGATGTTTTAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGAGAGTCATGGGCTGCTaGGCCAAGAAGGTGGGTGAA +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWRVMGC*AKKVGE
Trigger: TTCACCCACCTTCTTGGCCCAGCAGCCCATGACTCT...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp TTGACGAGCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGGCGAGAGTAGGCCTTaGAACAGCCTTCGAACGTGC +
Preference number: 4 (lower is better)
Translates to: LTSFMEESRGNSNPFSSQGESRP*NSLRTC
Trigger: GCACGTTCGAAGGCTGTTCCAAGGCCTACTCTCGCC...CTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGCTCGTCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGTGGGCGTCTGGCCCATaGACAGTCTTCACATGCTTG +
Preference number: 4 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRWASGP*TVFTCL
Trigger: CAAGCATGTGAAGACTGTCCATGGGCCAGACGCCCA...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGCTCTGCACGGATTGTaGATTATATCCTGGATACTG +
Preference number: 4 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLALHGL*IISWIL
Trigger: CAGTATCCAGGATATAATCCACAATCCGTGCAGAGC...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGGATGTGACCATGGCTTaGCCAGTGGTCCTGGCATAC +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWDVTMA*PVVLAY
Trigger: GTATGCCAGGACCACTGGCCAAGCCATGGTCACATC...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp TTGACGAGCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGAGCGCAGGGTGGCAGTaGACCTGGATTCATGTTGTG +
Preference number: 4 (lower is better)
Translates to: LTSFMEESRGNSNPFSSQSAGWQ*TWIHVV
Trigger: CACAACATGAATCCAGGTTCACTGCCACCCTGCGCT...CTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGCTCGTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGCAAAGCGATGCACGGTaGTCATGTGTTTGCGCAGCT +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWQSDAR*SCVCAA
Trigger: AGCTGCGCAAACACATGAGCACCGTGCATCGCTTTG...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp GCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGTTCTCTCTCTTCAGCTaGTCAAAGCGATGCACGGTG +
Preference number: 4 (lower is better)
Translates to: ASWKNPGETVIPFPPRWQFSLFS*SKRCTV
Trigger: CACCGTGCATCGCTTTGAGCAGCTGAAGAGAGAGAA...CTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGCGTTGCGGGTCAGGTTaGTGTCTACGCTGGGGTGGC +
Preference number: 4 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNERCGSG*CLRWGG
Trigger: GCCACCCCAGCGTAGACAGCAACCTGACCCGCAACG...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGTGGTACCTTCCCTCCTaGTGTCTCATGTCAATCGGC +
Preference number: 4 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRWYLPS*CLMSIG
Trigger: GCCGATTGACATGAGACACCAGGAGGGAAGGTACCA...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp TTGGCATCATTTAGACAGTTGCTGCTACTGCTGCTGAGTTGGGTAGGCATGGTGTGGTACCTTCCCTCCTaGTGTCTCATGTCAATCGGC +
Preference number: 4 (lower is better)
Translates to: LASFRQLLLLLLSWVGMVWYLPS*CLMSIG
Trigger: GCCGATTGACATGAGACACCAGGAGGGAAGGTACCA...CACCATGCCTACCCAACTCAGCAGCAGTAGCAGCAACTGTCTAAATGATGCCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159839.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR CCA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTACTGTTCTGCTTGTTCTaGTTGGCATCATTTAGACAG +
Preference number: 4 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLLFCLF*LASFRQ
Trigger: CTGTCTAAATGATGCCAACCAGAACAAGCAGAACAG...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGGACAGAACCATTGACTaGAAGGGGAGGCAGCTTGGT +
Preference number: 4 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRDRTID*KGRQLG
Trigger: ACCAAGCTGCCTCCCCTTCCAGTCAATGGTTCTGTC...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGATACTGGCCAAAGGCTaGCTTCTGTTGGACCACAGC +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWILAKG*LLLDHS
Trigger: GCTGTGGTCCAACAGAAGCCAGCCTTTGGCCAGTAT...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATGGTCTCAGATTCAAACCCCAGGTGGCTGGGCTTaGCTGCCATATTGCTGCAGG +
Preference number: 4 (lower is better)
Translates to: ANSSSQSREYPAWSQIQTPGGWA*LPYCCR
Trigger: CCTGCAGCAATATGGCAGCCAAGCCCAGCCACCTGG...GGTTTGAATCTGAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACAGCCGGCAGGAGCTGCTaGGGAACTCCGTGGGCGGCT +
Preference number: 4 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTAGRSC*GTPWAA
Trigger: AGCCGCCCACGGAGTTCCTCAGCAGCTCCTGCCGGC...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp GCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATGGTCTCAGATTCAAACCCTTGGTTGGCTGATGTaGCCATGGCTTGGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: ANSSSQSREYPAWSQIQTLGWLM*PWLGQW
Trigger: CCACTGGCCAAGCCATGGTCACATCAGCCAACCAAG...GGTTTGAATCTGAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp TCGCTGTTCTGCTTGTTCTGGTTGGCATCATTTAGACAGTTGCTGCTACTGCTGTTCTTTCTTCTCCAGTaGAGGGGCTGGGGCAGAAGT +
Preference number: 4 (lower is better)
Translates to: SLFCLFWLASFRQLLLLLFFLLQ*RGWGRS
Trigger: ACTTCTGCCCCAGCCCCTGCACTGGAGAAGAAAGAA...CAGCAGTAGCAGCAACTGTCTAAATGATGCCAACCAGAACAAGCAGAACAGCGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR GCA 90 bp GCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATGGTCTCAGATTCAAACCTTGAGAGTGTGGGGCTaGTGTGCACAGACCGGAGGT +
Preference number: 4 (lower is better)
Translates to: ANSSSQSREYPAWSQIQTLRVWG*CAQTGG
Trigger: ACCTCCGGTCTGTGCACAGCAGCCCCACACTCTCAA...GGTTTGAATCTGAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGGCCTTGAAGGGCTTCTaGTCTCTCGTGCAGGCCTGC +
Preference number: 4 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNEALKGF*SLVQAC
Trigger: GCAGGCCTGCACGAGAGAGCAGAAGCCCTTCAAGGC...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGCGGTGCTCATGTGTTTaGGCAGCTGCAGGCCACCAG +
Preference number: 4 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNERCSCV*AAAGHQ
Trigger: CTGGTGGCCTGCAGCTGCGCAAACACATGAGCACCG...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GCTGACTCGCTGTTCTGCTTGTTCTGGTTGGCATCATTTAGACAGTTGCTGCTATGGTACCTTCCCTCCTaGTGTCTCATGTCAATCGGC +
Preference number: 4 (lower is better)
Translates to: ADSLFCLFWLASFRQLLLWYLPS*CLMSIG
Trigger: GCCGATTGACATGAGACACCAGGAGGGAAGGTACCA...TAGCAGCAACTGTCTAAATGATGCCAACCAGAACAAGCAGAACAGCGAGTCAGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000159839.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR CCA 90 bp GCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATGGTCTCAGATTCAAACCGGGAAAAGTGAAGGCTaGGCTGAGGGCACCAGCAGA +
Preference number: 4 (lower is better)
Translates to: ANSSSQSREYPAWSQIQTGKSEG*AEGTSR
Trigger: TCTGCTGGTGCCCTCAGCCCAGCCTTCACTTTTCCC...GGTTTGAATCTGAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGTGCGGTTCTGGTGCTTaGCGCGGTCTGAGGCATTGG +
Preference number: 4 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNECGSGA*RGLRHW
Trigger: CCAATGCCTCAGACCGCGCCAAGCACCAGAACCGCA...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGATTCTCCTTGAGCAGTaGAGCACGGACATGCACATC +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWILLEQ*STDMHI
Trigger: GATGTGCATGTCCGTGCTCCACTGCTCAAGGAGAAT...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGAGGCGTGAGGAATTCTaGGAGAGATTGTGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWRREEF*ERLWRR
Trigger: CCTTCTCCACAATCTCTCCCAGAATTCCTCACGCCT...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CAA 72 bp CTGTTCTGCTTGTTCTGGTTGGCATCATTTAGACAGTaGCTGCTACTGCTGCTGAGTTGGGTAGGCATGGTG +
Preference number: 4 (lower is better)
Translates to: LFCLFWLASFRQ*LLLLLSWVGMV
Trigger: CACCATGCCTACCCAACTCAGCAGCAGTAGCAGCAACTGTCTAAATGATGCCAACCAGAACAAGCAGAACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS-3UTR TCA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGGCAGGAATCCTTCAGTaGCTTGAGCTTCTCTCTCTT +
Preference number: 4 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRAGILQ*LELLSL
Trigger: AAGAGAGAGAAGCTCAAGTCACTGAAGGATTCCTGC...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGTCTGCTGGGACTCCATaGAGCCAGGCTGATGGGATG +
Preference number: 4 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNESAGTP*SQADGM
Trigger: CATCCCATCAGCCTGGCTTCATGGAGTCCCAGCAGA...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGTGCAGCCTGGGATCTTaGAGATGTAGGGTTTCTCAT +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWCSLGS*RCRVSH
Trigger: ATGAGAAACCCTACATCTGCAAGATCCCAGGCTGCA...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATGGTCTCAGATTCAAACCACGGCTAGAGAAGTATaGGGAGATGCCAGAGGAGCG +
Preference number: 4 (lower is better)
Translates to: ANSSSQSREYPAWSQIQTTAREV*GDARGA
Trigger: CGCTCCTCTGGCATCTCCCCATACTTCTCTAGCCGT...GGTTTGAATCTGAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGGTGAGGGAAAGGAGGTaGCTTCACCTGGGTAGGCAG +
Preference number: 4 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNEVRERR*LHLGRQ
Trigger: CTGCCTACCCAGGTGAAGCCACCTCCTTTCCCTCAC...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp TCTTCCCAGGGAGGGCTTCACTGTATACCTCAGAACACTGTAAACAGGCCAGGATTATATCCTGGATACTaGCCAAAGGCTGGCTTCTGT +
Preference number: 4 (lower is better)
Translates to: SSQGGLHCIPQNTVNRPGLYPGY*PKAGFC
Trigger: ACAGAAGCCAGCCTTTGGCCAGTATCCAGGATATAA...TCCTGGCCTGTTTACAGTGTTCTGAGGTATACAGTGAAGCCCTCCCTGGGAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGGAGCTAGGGATACCATaGTCCCTGCTGGTCCCTTGG +
Preference number: 4 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNEELGIP*SLLVPW
Trigger: CCAAGGGACCAGCAGGGACCATGGTATCCCTAGCTC...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp GCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATGGTCTCAGATTCAAACCCGCGGTCTGAGGCATTaGAGAAGGCTTTGTTACAGC +
Preference number: 4 (lower is better)
Translates to: ANSSSQSREYPAWSQIQTRGLRH*RRLCYS
Trigger: GCTGTAACAAAGCCTTCTCCAATGCCTCAGACCGCG...GGTTTGAATCTGAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACAGTCATGGAGATGGGGTaGGCTAGCAGCACCCCCGCT +
Preference number: 4 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTVMEMG*ASSTPA
Trigger: AGCGGGGGTGCTGCTAGCGCACCCCATCTCCATGAC...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACATGGACAGAGCCCGCTTaGGGCTCAGTCGTGGGGTCA +
Preference number: 4 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTWTEPA*GSVVGS
Trigger: TGACCCCACGACTGAGCCGCAAGCGGGCTCTGTCCA...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CATTTGGAGTTGGTCCTGTCTCTGGGTTGTAAACAGAGAAGTTTGCTGCCCTGGTCATGTTTAAAAACTTaGTCTCTTCAGCCAGGCTGG +
Preference number: 4 (lower is better)
Translates to: HLELVLSLGCKQRSLLPWSCLKT*SLQPGW
Trigger: CCAGCCTGGCTGAAGAGAGCAAGTTTTTAAACATGA...CCAGGGCAGCAAACTTCTCTGTTTACAACCCAGAGACAGGACCAACTCCAAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR TCA 90 bp TTGACGAGCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGAAAACAAACTCGAGTaGTCACCATCATCCATGATG +
Preference number: 4 (lower is better)
Translates to: LTSFMEESRGNSNPFSSQENKLE*SPSSMM
Trigger: CATCATGGATGATGGTGATCACTCGAGTTTGTTTTC...CTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGCTCGTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGCTCACCTCATTCCACTaGACAGGCATGTTGCTCTTG +
Preference number: 4 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNELTSFH*TGMLLL
Trigger: CAAGAGCAACATGCCTGTGCAGTGGAATGAGGTGAG...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACATACCCAGGCACTGACTaGCTGCAGCTGGCTGTCGAG +
Preference number: 4 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTYPGTD*LQLAVE
Trigger: CTCGACAGCCAGCTGCAGGCAGTCAGTGCCTGGGTA...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACAGCAGGGCATCCACGGTaGCAGAACTCACCTCATTCC +
Preference number: 4 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTAGHPR*QNSPHS
Trigger: GGAATGAGGTGAGTTCTGGCACCGTGGATGCCCTGC...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACAGTGTGTCATACTCCTTaGTGCAGTCTGCCCAGTGGC +
Preference number: 4 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTVCHTP*CSLPSG
Trigger: GCCACTGGGCAGACTGCACCAAGGAGTATGACACAC...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR GCA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACAAAGGGTTGGGCTCAGTaGACCAGAAAACAAACTCGA +
Preference number: 4 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTKGWAQ*TRKQTR
Trigger: TCGAGTTTGTTTTCTGGTGCACTGAGCCCAACCCTT...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CCA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACATGTAGGGTTTCTCATTaGAGTGAGTGCGGTTCTGGT +
Preference number: 4 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTCRVSH*SECGSG
Trigger: ACCAGAACCGCACTCACTCCAATGAGAAACCCTACA...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
3UTR CAA 72 bp AAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTaGGATTCACCCACAGTCTATTCAGGCAAGACGATG +
Preference number: 4 (lower is better)
Translates to: KMFGNINLAGPN*DSPTVYSGKTM
Trigger: CATCGTCTTGCCTGAATAGACTGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp GTCAGGGCGCCGCACAGGGTCGCTGGCCCGCCGTGTGCTGCTGTTTaGCCCCTCGTGGGGGAATGCTGGAGCCGCACCTGCGTAGCCATG +
Preference number: 5 (lower is better)
Translates to: VRAPHRVAGPPCAAV*PLVGECWSRTCVAM
Trigger: CATGGCTACGCAGGTGCGGCTCCAGCATTCCCCCACGAGGGGCCAAACAGCAGCACACGGCGGGCCAGCGACCCTGTGCGGCGCCCTGAC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp GCTGCCACGCCGTGGCCCCAGTGGATGTGGGCAGGCACCAGGAAGTaGACGCTCAGGAGCATCCAGCAAGGCCAGGCGGGTACGAAGGCT +
Preference number: 5 (lower is better)
Translates to: AATPWPQWMWAGTRK*TLRSIQQGQAGTKA
Trigger: AGCCTTCGTACCCGCCTGGCCTTGCTGGATGCTCCTGAGCGTGCACTTCCTGGTGCCTGCCCACATCCACTGGGGCCACGGCGTGGCAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp GAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGATGGACAGAGCCCGCTaGCGGCTCAGTCGTGGGGTC +
Preference number: 5 (lower is better)
Translates to: EAAGGRSGLSAGHQPVWRMDRAR*RLSRGV
Trigger: GACCCCACGACTGAGCCGCAAGCGGGCTCTGTCCAT...CCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp GAAAGCCGGCAGGAGCTGCTGAGGAACTCCGTGGGCGGCTACAGCTaGGGCCACCGCCAGAGGACAGGCCTTTTTCCCTGGGTCGGGGAA +
Preference number: 5 (lower is better)
Translates to: ESRQELLRNSVGGYS*GHRQRTGLFPWVGE
Trigger: TTCCCCGACCCAGGGAAAAAGGCCTGTCCTCTGGCGGTGGCCGCAGCTGTAGCCGCCCACGGAGTTCCTCAGCAGCTCCTGCCGGCTTTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000062483.15
ENSMUST00000159839.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS GCA 90 bp ATCGAGGCCCGGCAGTGGCGTGGGCGGTGGTCCACCTGTGGCCGCTaGGTACTTGGCACGCAGGTTGTACTGCTGCGCAGGTGTGAGGTT +
Preference number: 5 (lower is better)
Translates to: IEARQWRGRWSTCGR*VLGTQVVLLRRCEV
Trigger: AACCTCACACCTGCGCAGCAGTACAACCTGCGTGCCAAGTACGCAGCGGCCACAGGTGGACCACCGCCCACGCCACTGCCGGGCCTCGAT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp GGGGTCTGGGAGAGTAGGCGTTGCGGGTCAGGTTGCTGTCTACGCTaGGGTGGCTCTGTACGTGCAGGCCACGCCGATCAGCGCAGGGTG +
Preference number: 5 (lower is better)
Translates to: GVWESRRCGSGCCLR*GGSVRAGHADQRRV
Trigger: CACCCTGCGCTGATCGGCGTGGCCTGCACGTACAGAGCCACCCCAGCGTAGACAGCAACCTGACCCGCAACGCCTACTCTCCCAGACCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp CTCATGTCAATCGGCAAAGGCGCGTGGAAAGCCGGCAGGAGCTGCTaGGGAACTCCGTGGGCGGCTACAGCTGCGGCCACCGCCAGAGGA +
Preference number: 5 (lower is better)
Translates to: LMSIGKGAWKAGRSC*GTPWAATAAATARG
Trigger: TCCTCTGGCGGTGGCCGCAGCTGTAGCCGCCCACGGAGTTCCTCAGCAGCTCCTGCCGGCTTTCCACGCGCCTTTGCCGATTGACATGAG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000062483.15
ENSMUST00000159839.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS TCA 90 bp CCGCTTGCGGCTCAGTCGTGGGGTCACACGTGGACTAGAGAATCGTaGTGCTCCGTGGGCGGCTACAGCTGCGGCCACCGCCAGAGGACA +
Preference number: 5 (lower is better)
Translates to: PLAAQSWGHTWTRES*CSVGGYSCGHRQRT
Trigger: TGTCCTCTGGCGGTGGCCGCAGCTGTAGCCGCCCACGGAGCATCACGATTCTCTAGTCCACGTGTGACCCCACGACTGAGCCGCAAGCGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161451.8
CDS CCA 90 bp GCTATAGGTAGGCCCATCGCTGCCACGCCGTGGCCCCAGTGGATGTaGGCAGGCACCAGGAAGTGCACGCTCAGGAGCATCCAGCAAGGC +
Preference number: 5 (lower is better)
Translates to: AIGRPIAATPWPQWM*AGTRKCTLRSIQQG
Trigger: GCCTTGCTGGATGCTCCTGAGCGTGCACTTCCTGGTGCCTGCCCACATCCACTGGGGCCACGGCGTGGCAGCGATGGGCCTACCTATAGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp GCTGGCCCGCCGTGTGCTGCTGTTTGGCCCCTCGTGGGGGAATGCTaGAGCCGCACCTGCGTAGCCATGGCCATGACCATGGCTATAGGT +
Preference number: 5 (lower is better)
Translates to: AGPPCAAVWPLVGEC*SRTCVAMAMTMAIG
Trigger: ACCTATAGCCATGGTCATGGCCATGGCTACGCAGGTGCGGCTCCAGCATTCCCCCACGAGGGGCCAAACAGCAGCACACGGCGGGCCAGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp AGCTCAGCTGGCAGCCCCCGAGTCCAGGAGCAGAAGGACCCATGTTaGAGTCGGCAGCTGCTAGCCTGCGGTGGCCTTGTAGCCCAGGAC +
Preference number: 5 (lower is better)
Translates to: SSAGSPRVQEQKDPC*SRQLLACGGLVAQD
Trigger: GTCCTGGGCTACAAGGCCACCGCAGGCTAGCAGCTGCCGACTCCAACATGGGTCCTTCTGCTCCTGGACTCGGGGGCTGCCAGCTGAGCT
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp GAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGGTCCCTGCTGGTCCCTaGGGCATAGCTTCTGCTGTC +
Preference number: 5 (lower is better)
Translates to: EAAGGRSGLSAGHQPVWRVPAGP*GIASAV
Trigger: GACAGCAGAAGCTATGCCCAAGGGACCAGCAGGGAC...CCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp GCGTTGCGGGTCAGGTTGCTGTCTACGCTGGGGTGGCTCTGTACGTaGAGGCCACGCCGATCAGCGCAGGGTGGCAGTGAACCTGGATTC +
Preference number: 5 (lower is better)
Translates to: ALRVRLLSTLGWLCT*RPRRSAQGGSEPGF
Trigger: GAATCCAGGTTCACTGCCACCCTGCGCTGATCGGCGTGGCCTGCACGTACAGAGCCACCCCAGCGTAGACAGCAACCTGACCCGCAACGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp GGCGGCTACAGCTGCGGCCACCGCCAGAGGACAGGCCTTTTTCCCTaGGTCGGGGAAGCTGCTGTCCTCCAAGAGACCACTCTTGGCTTC +
Preference number: 5 (lower is better)
Translates to: GGYSCGHRQRTGLFP*VGEAAVLQETTLGF
Trigger: GAAGCCAAGAGTGGTCTCTTGGAGGACAGCAGCTTCCCCGACCCAGGGAAAAAGGCCTGTCCTCTGGCGGTGGCCGCAGCTGTAGCCGCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000062483.15
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000161301.8
ENSMUST00000161451.8
ENSMUST00000162552.8
CDS CCA 90 bp GCTGGTGCTACTGGCCTCCACACTCTCCTCAGGTCCCCGGCCACCTaGCTCGGCGCTGGCCTCATTATCCCCATTCTCCTTGAGCAGTGG +
Preference number: 5 (lower is better)
Translates to: AGATGLHTLLRSPAT*LGAGLIIPILLEQW
Trigger: CCACTGCTCAAGGAGAATGGGGATAATGAGGCCAGCGCCGAGCCAGGTGGCCGGGGACCTGAGGAGAGTGTGGAGGCCAGTAGCACCAGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp TGCAGCTGGCTCAGCATCGTCACTTCGGTCAGCTCTGGTAGCCGCTaGCTGGGCAGCAGTCCTGCCGGTCCACCGCCCCCTGTATTGTTG +
Preference number: 5 (lower is better)
Translates to: CSWLSIVTSVSSGSR*LGSSPAGPPPPVLL
Trigger: CAACAATACAGGGGGCGGTGGACCGGCAGGACTGCTGCCCAGCCAGCGGCTACCAGAGCTGACCGAAGTGACGATGCTGAGCCAGCTGCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp ACCATGGCTATAGGTAGGCCCATCGCTGCCACGCCGTGGCCCCAGTaGATGTGGGCAGGCACCAGGAAGTGCACGCTCAGGAGCATCCAG +
Preference number: 5 (lower is better)
Translates to: TMAIGRPIAATPWPQ*MWAGTRKCTLRSIQ
Trigger: CTGGATGCTCCTGAGCGTGCACTTCCTGGTGCCTGCCCACATCCACTGGGGCCACGGCGTGGCAGCGATGGGCCTACCTATAGCCATGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp ATGGCCATGACCATGGCTATAGGTAGGCCCATCGCTGCCACGCCGTaGCCCCAGTGGATGTGGGCAGGCACCAGGAAGTGCACGCTCAGG +
Preference number: 5 (lower is better)
Translates to: MAMTMAIGRPIAATP*PQWMWAGTRKCTLR
Trigger: CCTGAGCGTGCACTTCCTGGTGCCTGCCCACATCCACTGGGGCCACGGCGTGGCAGCGATGGGCCTACCTATAGCCATGGTCATGGCCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp GAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGCCTTCGAACGTGCACTaGTGTGGCTTCTCACCCGTG +
Preference number: 5 (lower is better)
Translates to: EAAGGRSGLSAGHQPVWRPSNVH*CGFSPV
Trigger: CACGGGTGAGAAGCCACACAAGTGCACGTTCGAAGG...CCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp TGTCAACTTGACACAGCTGGCGTTACCTCCGTGGGCGGCTACAGCTaGGGCCACCGCCAGAGGACAGGCCTTTTTCCCTGGGTCGGGGAA +
Preference number: 5 (lower is better)
Translates to: CQLDTAGVTSVGGYS*GHRQRTGLFPWVGE
Trigger: TTCCCCGACCCAGGGAAAAAGGCCTGTCCTCTGGCGGTGGCCGCAGCTGTAGCCGCCCACGGAGGTAACGCCAGCTGTGTCAAGTTGACA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161301.8
CDS-3UTR CAA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTACAGCTGGGGGTGGGCTaGGCTGTAGCTGGCCTGCGG +
Preference number: 5 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLQLGVG*AVAGLR
Trigger: CCGCAGGCCAGCTACAGCCAAGCCCACCCCCAGCTG...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp TGTGCTGCTGTTTGGCCCCTCGTGGGGGAATGCTGGAGCCGCACCTaGGTAGCCATGGCCATGACCATGGCTATAGGTAGGCCCATCGCT +
Preference number: 5 (lower is better)
Translates to: CAAVWPLVGECWSRT*VAMAMTMAIGRPIA
Trigger: AGCGATGGGCCTACCTATAGCCATGGTCATGGCCATGGCTACGCAGGTGCGGCTCCAGCATTCCCCCACGAGGGGCCAAACAGCAGCACA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp CTCAGTCGTGGGGTCACACGTGGACTAGAGAATCGTGATGCTCCGTaGGCGGCTACAGCTGCGGCCACCGCCAGAGGACAGGCCTTTTTC +
Preference number: 5 (lower is better)
Translates to: LSRGVTRGLENRDAP*AATAAATARGQAFF
Trigger: GAAAAAGGCCTGTCCTCTGGCGGTGGCCGCAGCTGTAGCCGCCCACGGAGCATCACGATTCTCTAGTCCACGTGTGACCCCACGACTGAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000161451.8
CDS TCA 90 bp CCACCTCGGCCTCCTGCTTACAGTCATCCCTGTCCAGGTCTTCCTTaGGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCTG +
Preference number: 5 (lower is better)
Translates to: PPRPPAYSHPCPGLP*DRPAAPVSVQAGML
Trigger: CAGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTGTAAGCAGGAGGCCGAGGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp TCTCTCTCTTCAGCTGCTCAAAGCGATGCACGGTGCTCATGTGTTTaGGCAGCTGCAGGCCACCAGTGGAGGGTGCAGCCAGGGCTGAGG +
Preference number: 5 (lower is better)
Translates to: SLSSAAQSDARCSCV*AAAGHQWRVQPGLR
Trigger: CCTCAGCCCTGGCTGCACCCTCCACTGGTGGCCTGCAGCTGCGCAAACACATGAGCACCGTGCATCGCTTTGAGCAGCTGAAGAGAGAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGCCGTGTGCTGCTGTTaGGCCCCTCGTGGGGGAATG +
Preference number: 5 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLAVCCC*APRGGM
Trigger: CATTCCCCCACGAGGGGCCAAACAGCAGCACACGGC...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp GCGGGTGTGTGGAGCTGGGCCGGCCCACGAGCAGGAATCCTTCAGTaGCTTGAGCTTCTCTCTCTTCAGCTGCTCAAAGCGATGCACGGT +
Preference number: 5 (lower is better)
Translates to: AGVWSWAGPRAGILQ*LELLSLQLLKAMHG
Trigger: ACCGTGCATCGCTTTGAGCAGCTGAAGAGAGAGAAGCTCAAGTCACTGAAGGATTCCTGCTCGTGGGCCGGCCCAGCTCCACACACCCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp TACTGGCCAAAGGCTGGCTTCTGTTGGACCACAGCCAGGTTGCTGTaGGGGAAAGGAGGTGGCTTCACCTGGGTAGGCAGGGCATCCACG +
Preference number: 5 (lower is better)
Translates to: YWPKAGFCWTTARLL*GKGGGFTWVGRAST
Trigger: CGTGGATGCCCTGCCTACCCAGGTGAAGCCACCTCCTTTCCCTCACAGCAACCTGGCTGTGGTCCAACAGAAGCCAGCCTTTGGCCAGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp TGCCCGCAGGGATGGAGGGCAGTGTCAAGGAATTCCGGGGTGTGGTaGGGCGTGAGGAATTCTGGGAGAGATTGTGGAGAAGGGTTGGGC +
Preference number: 5 (lower is better)
Translates to: CPQGWRAVSRNSGVW*GVRNSGRDCGEGLG
Trigger: GCCCAACCCTTCTCCACAATCTCTCCCAGAATTCCTCACGCCTCACCACACCCCGGAATTCCTTGACACTGCCCTCCATCCCTGCGGGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp CGGCCACCGCCAGAGGACAGGCCTTTTTCCCTGGGTCGGGGAAGCTaGTGTCCTCCAAGAGACCACTCTTGGCTTCTTTCTTCTCCAGTG +
Preference number: 5 (lower is better)
Translates to: RPPPEDRPFSLGRGS*CPPRDHSWLLSSPV
Trigger: CACTGGAGAAGAAAGAAGCCAAGAGTGGTCTCTTGGAGGACAGCAGCTTCCCCGACCCAGGGAAAAAGGCCTGTCCTCTGGCGGTGGCCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000062483.15
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000161301.8
ENSMUST00000161451.8
ENSMUST00000162552.8
CDS CCA 90 bp TGGCTTCTGTTGGACCACAGCCAGGTTGCTGTGAGGGAAAGGAGGTaGCTTCACCTGGGTAGGCAGGGCATCCACGGTGCCAGAACTCAC +
Preference number: 5 (lower is better)
Translates to: WLLLDHSQVAVRERR*LHLGRQGIHGARTH
Trigger: GTGAGTTCTGGCACCGTGGATGCCCTGCCTACCCAGGTGAAGCCACCTCCTTTCCCTCACAGCAACCTGGCTGTGGTCCAACAGAAGCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp GTGCTAGACACCTGGTTGACTCCCGGTGAAGGCAAAGGCTCAGGCTaGATACTGTCTGAGCAAGCTTGTGGTTGTGGCGGCTGGGGCTGC +
Preference number: 5 (lower is better)
Translates to: VLDTWLTPGEGKGSG*ILSEQACGCGGWGC
Trigger: GCAGCCCCAGCCGCCACAACCACAAGCTTGCTCAGACAGTATCCAGCCTGAGCCTTTGCCTTCACCGGGAGTCAACCAGGTGTCTAGCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACATGCCACTGTCATTGTaGGGGGCACTGCCCAGGGGA +
Preference number: 5 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHMPLSL*GALPRG
Trigger: TCCCCTGGGCAGTGCCCCCAACAATGACAGTGGCAT...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACTCCATGCCACTGTCATaGTTGGGGGCACTGCCCAGG +
Preference number: 5 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHSMPLS*LGALPR
Trigger: CCTGGGCAGTGCCCCCAACAATGACAGTGGCATGGA...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTAGGAAGGGGAGGCAGCTaGGTGTTGCGGGTGTGTGGA +
Preference number: 5 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLGRGGS*VLRVCG
Trigger: TCCACACACCCGCAACACCAAGCTGCCTCCCCTTCC...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp GAGGCTGCAGGTGGTCGCTCAGGGTTGTCTGCTGGCCACCAGCCGGTGTGGAGGTTCATGATGGTGGCATaGGGGACAACTTCCATTTGC +
Preference number: 5 (lower is better)
Translates to: EAAGGRSGLSAGHQPVWRFMMVA*GTTSIC
Trigger: GCAAATGGAAGTTGTCCCCAATGCCACCATCATGAA...CCTCCACACCGGCTGGTGGCCAGCAGACAACCCTGAGCGACCACCTGCAGCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp CCCGGCCACCTGGCTCGGCGCTGGCCTCATTATCCCCATTCTCCTTaGGCAGTGGAGCACGGACATGCACATCATTACGCTGTTTCTTGG +
Preference number: 5 (lower is better)
Translates to: PGHLARRWPHYPHSP*AVEHGHAHHYAVSW
Trigger: CCAAGAAACAGCGTAATGATGTGCATGTCCGTGCTCCACTGCTCAAGGAGAATGGGGATAATGAGGCCAGCGCCGAGCCAGGTGGCCGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp TGCCAGAACTCACCTCATTCCACTGCACAGGCATGTTGCTCTTGTTaGGGTTGGAGGAGGGGCTGTAGCTCAGCTGGCAGCCCCCGAGTC +
Preference number: 5 (lower is better)
Translates to: CQNSPHSTAQACCSC*GWRRGCSSAGSPRV
Trigger: GACTCGGGGGCTGCCAGCTGAGCTACAGCCCCTCCTCCAACCTCAACAAGAGCAACATGCCTGTGCAGTGGAATGAGGTGAGTTCTGGCA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp GGTGGCAGTGAACCTGGATTCATGTTGTGGGTACTGTGGAAACGTTaGACTCGAGGCAGAATAAGGGGGTCAGGGCGCCGCACAGGGTCG +
Preference number: 5 (lower is better)
Translates to: GGSEPGFMLWVLWKR*TRGRIRGSGRRTGS
Trigger: CGACCCTGTGCGGCGCCCTGACCCCCTTATTCTGCCTCGAGTGCAACGTTTCCACAGTACCCACAACATGAATCCAGGTTCACTGCCACC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp GGCTGGATACTGTCTGAGCAAGCTTGTGGTTGTGGCGGCTGGGGCTaGACGGCTGGGCAGCCTCCATTCTGTTCATACATGTGGATCTGG +
Preference number: 5 (lower is better)
Translates to: GWILSEQACGCGGWG*TAGQPPFCSYMWIW
Trigger: CCAGATCCACATGTATGAACAGAATGGAGGCTGCCCAGCCGTGCAGCCCCAGCCGCCACAACCACAAGCTTGCTCAGACAGTATCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp TCAGCGCAGGGTGGCAGTGAACCTGGATTCATGTTGTGGGTACTGTaGAAACGTTGCACTCGAGGCAGAATAAGGGGGTCAGGGCGCCGC +
Preference number: 5 (lower is better)
Translates to: SAQGGSEPGFMLWVL*KRCTRGRIRGSGRR
Trigger: GCGGCGCCCTGACCCCCTTATTCTGCCTCGAGTGCAACGTTTCCACAGTACCCACAACATGAATCCAGGTTCACTGCCACCCTGCGCTGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACTGGCGGCAGAGATCATaGAGAGTGTGGGGCTGCTGT +
Preference number: 5 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHWRQRS*RVWGCC
Trigger: ACAGCAGCCCCACACTCTCAATGATCTCTGCCGCCA...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAAAGGTTGGAGCCCTGTaGGTAGCTGTCCTGCTGGGG +
Preference number: 5 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLKVGAL*VAVLLG
Trigger: CCCCAGCAGGACAGCTACCAACAGGGCTCCAACCTT...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp TGTGTGGAGCTGGGCCGGCCCACGAGCAGGAATCCTTCAGTGACTTaGGCTTCTCTCTCTTCAGCTGCTCAAAGCGATGCACGGTGCTCA +
Preference number: 5 (lower is better)
Translates to: CVELGRPTSRNPSVT*ASLSSAAQSDARCS
Trigger: TGAGCACCGTGCATCGCTTTGAGCAGCTGAAGAGAGAGAAGCTCAAGTCACTGAAGGATTCCTGCTCGTGGGCCGGCCCAGCTCCACACA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp AAAGCCCGCGTTCTGCTGGGACTCCATGAAGCCAGGCTGATGGGATaGCAGAAGGTTGGAGCCCTGTTGGTAGCTGTCCTGCTGGGGATA +
Preference number: 5 (lower is better)
Translates to: KARVLLGLHEARLMG*QKVGALLVAVLLGI
Trigger: TATCCCCAGCAGGACAGCTACCAACAGGGCTCCAACCTTCTGTCATCCCATCAGCCTGGCTTCATGGAGTCCCAGCAGAACGCGGGCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp AGGGATGGAGGGCAGTGTCAAGGAATTCCGGGGTGTGGTGAGGCGTaGGGAATTCTGGGAGAGATTGTGGAGAAGGGTTGGGCTCAGTGC +
Preference number: 5 (lower is better)
Translates to: RDGGQCQGIPGCGEA*GILGEIVEKGWAQC
Trigger: GCACTGAGCCCAACCCTTCTCCACAATCTCTCCCAGAATTCCTCACGCCTCACCACACCCCGGAATTCCTTGACACTGCCCTCCATCCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp AGCTGTAGGTGCGGCTGGGTGCTGTCTAGACCTCCGGAGCTGCTCTaGACGGATTGTGGATTATATCCTGGATACTGGCCAAAGGCTGGC +
Preference number: 5 (lower is better)
Translates to: SCRCGWVLSRPPELL*TDCGLYPGYWPKAG
Trigger: GCCAGCCTTTGGCCAGTATCCAGGATATAATCCACAATCCGTGCAGAGCAGCTCCGGAGGTCTAGACAGCACCCAGCCGCACCTACAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp CTCTCTGTCTTGATGGCTTTGATATGTAGGCAGTCCTCCACAGTGTaGCTGGTGCTACTGGCCTCCACACTCTCCTCAGGTCCCCGGCCA +
Preference number: 5 (lower is better)
Translates to: LSVLMALICRQSSTV*LVLLASTLSSGPRP
Trigger: TGGCCGGGGACCTGAGGAGAGTGTGGAGGCCAGTAGCACCAGCCACACTGTGGAGGACTGCCTACATATCAAAGCCATCAAGACAGAGAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp AGGTGGCTGGGCTTGGCTGCCATATTGCTGCAGGAGGGAGAAAACTaGTTCAGAGATCCGCTGACAATGTTTGGGCTCAGCTGGGGGTGG +
Preference number: 5 (lower is better)
Translates to: RWLGLAAILLQEGEN*FRDPLTMFGLSWGW
Trigger: CCACCCCCAGCTGAGCCCAAACATTGTCAGCGGATCTCTGAACCAGTTTTCTCCCTCCTGCAGCAATATGGCAGCCAAGCCCAGCCACCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTTAAAACATCTGCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGGCAGCCAGGGATGAATaGGGGACCCCGTGCTCCCGT +
Preference number: 5 (lower is better)
Translates to: LKTSARRPLGMAQSCHLEAARDE*GTPCSR
Trigger: ACGGGAGCACGGGGTCCCCAATTCATCCCTGGCTGC...CTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAGATGTTTTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp GGCCAGCAGGGTGTGGAGAAAGTCGTATCAAGGAGATATCTGAGATaGCAGGGCTGCCACTTAGGGTGGGAGGCCCGTGTACACTGTGGA +
Preference number: 5 (lower is better)
Translates to: GQQGVEKVVSRRYLR*QGCHLGWEARVHCG
Trigger: TCCACAGTGTACACGGGCCTCCCACCCTAAGTGGCAGCCCTGTCATCTCAGATATCTCCTTGATACGACTTTCTCCACACCCTGCTGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000062483.15
ENSMUST00000161301.8
CDS TCA 90 bp GTGGGATACCCCTGCCGAATGCCGTCATCCAAGGTACCACCGGTGTaGGCCTTGATGTACTGTACCACATCATCTGGCAGCACCAGCTCA +
Preference number: 5 (lower is better)
Translates to: VGYPCRMPSSKVPPV*ALMYCTTSSGSTSS
Trigger: TGAGCTGGTGCTGCCAGATGATGTGGTACAGTACATCAAGGCTCACACCGGTGGTACCTTGGATGACGGCATTCGGCAGGGGTATCCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp CTGCCATATTGCTGCAGGAGGGAGAAAACTGGTTCAGAGATCCGCTaGCAATGTTTGGGCTCAGCTGGGGGTGGGCTTGGCTGTAGCTGG +
Preference number: 5 (lower is better)
Translates to: LPYCCRREKTGSEIR*QCLGSAGGGLGCSW
Trigger: CCAGCTACAGCCAAGCCCACCCCCAGCTGAGCCCAAACATTGTCAGCGGATCTCTGAACCAGTTTTCTCCCTCCTGCAGCAATATGGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 90 bp CTCATGTCAATCGGCAAAGGCGCGTGGAAAGCCGGCAGGAGCTGCTaGGGAACTGTGACGGTCAAAGGAGATATGGGGTGTCCTGGTCTA +
Preference number: 5 (lower is better)
Translates to: LMSIGKGAWKAGRSC*GTVTVKGDMGCPGL
Trigger: TAGACCAGGACACCCCATATCTCCTTTGACCGTCACAGTTCCTCAGCAGCTCCTGCCGGCTTTCCACGCGCCTTTGCCGATTGACATGAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161301.8
CDS GCA 90 bp CTCGAAGCTGTAGGTGCGGCTGGGTGCTGTCTAGACCTCCGGAGCTaGTCTGCACGGATTGTGGATTATATCCTGGATACTGGCCAAAGG +
Preference number: 5 (lower is better)
Translates to: LEAVGAAGCCLDLRS*SARIVDYILDTGQR
Trigger: CCTTTGGCCAGTATCCAGGATATAATCCACAATCCGTGCAGAGCAGCTCCGGAGGTCTAGACAGCACCCAGCCGCACCTACAGCTTCGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTAGCTACTGCTGCTGAGTaGGGTAGGCATGGTGCTGAT +
Preference number: 5 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLATAAE*GRHGAD
Trigger: ATCAGCACCATGCCTACCCAACTCAGCAGCAGTAGC...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp ATGGCCCAGAGCTGTCATTTGGAGTTGGCCATTGCCCAACCCCTCTCAGGCCTAAAAGGCTGGCTTCTGTaGGACCACAGCCAGGTTGCT +
Preference number: 5 (lower is better)
Translates to: MAQSCHLELAIAQPLSGLKGWLL*DHSQVA
Trigger: AGCAACCTGGCTGTGGTCCAACAGAAGCCAGCCTTT...TAGGCCTGAGAGGGGTTGGGCAATGGCCAACTCCAAATGACAGCTCTGGGCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTTAAAACATCTGCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGGCGTGTAGCTCCCTCTaGATGCAGAGGGGGCTCCTC +
Preference number: 5 (lower is better)
Translates to: LKTSARRPLGMAQSCHLEACSSL*MQRGLL
Trigger: GAGGAGCCCCCTCTGCATCAAGAGGGAGCTACACGC...CTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAGATGTTTTAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp TCCTTCAGTGACTTGAGCTTCTCTCTCTTCAGCTGCTCAAAGCGATaGACGGTGCTCATGTGTTTGCGCAGCTGCAGGCCACCAGTGGAG +
Preference number: 5 (lower is better)
Translates to: SFSDLSFSLFSCSKR*TVLMCLRSCRPPVE
Trigger: CTCCACTGGTGGCCTGCAGCTGCGCAAACACATGAGCACCGTGCATCGCTTTGAGCAGCTGAAGAGAGAGAAGCTCAAGTCACTGAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 90 bp GACAACTTCCATTTGCTGAGGGAGTCCCAGGTGGCTGGGCTTGGCTaGCATATTGCTGCAGGAGGGAGAAAACTGGTTCAGAGATCCGCT +
Preference number: 5 (lower is better)
Translates to: DNFHLLRESQVAGLG*HIAAGGRKLVQRSA
Trigger: AGCGGATCTCTGAACCAGTTTTCTCCCTCCTGCAGCAATATGGCAGCCAAGCCCAGCCACCTGGGACTCCCTCAGCAAATGGAAGTTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp TGGCATTGGGGACAACTTCCATTTGCTGAGGGAGTCCCAGGTGGCTaGGCTTGGCTGCCATATTGCTGCAGGAGGGAGAAAACTGGTTCA +
Preference number: 5 (lower is better)
Translates to: WHWGQLPFAEGVPGG*AWLPYCCRREKTGS
Trigger: TGAACCAGTTTTCTCCCTCCTGCAGCAATATGGCAGCCAAGCCCAGCCACCTGGGACTCCCTCAGCAAATGGAAGTTGTCCCCAATGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGTCCACCCGCCCCCTGTATTGTaGAAGTTTTCCAGGACAGAA +
Preference number: 5 (lower is better)
Translates to: LFLGKASSTSRPCLFLVHPPPVL*KFSRTE
Trigger: TTCTGTCCTGGAAAACTTCAACAATACAGGGGGCGG...GTGGACTAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTAGAATTCTGGGAGAGATaGTGGAGAAGGGTTGGGCTC +
Preference number: 5 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLEFWER*WRRVGL
Trigger: GAGCCCAACCCTTCTCCACAATCTCTCCCAGAATTC...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp ACCTGGCTCGGCGCTGGCCTCATTATCCCCATTCTCCTTGAGCAGTaGAGCACGGACATGCACATCATTACGCTGTTTCTTGGTGACATG +
Preference number: 5 (lower is better)
Translates to: TWLGAGLIIPILLEQ*STDMHIITLFLGDM
Trigger: CATGTCACCAAGAAACAGCGTAATGATGTGCATGTCCGTGCTCCACTGCTCAAGGAGAATGGGGATAATGAGGCCAGCGCCGAGCCAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp GCTCTGCACGGATTGTGGATTATATCCTGGATACTGGCCAAAGGCTaGCTTCTGTTGGACCACAGCCAGGTTGCTGTGAGGGAAAGGAGG +
Preference number: 5 (lower is better)
Translates to: ALHGLWIISWILAKG*LLLDHSQVAVRERR
Trigger: CCTCCTTTCCCTCACAGCAACCTGGCTGTGGTCCAACAGAAGCCAGCCTTTGGCCAGTATCCAGGATATAATCCACAATCCGTGCAGAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp GACTTCCTTTTCCTGGGGAAGGCCTCTTCCACCTCGAGGCCCTGCCTATTCCTACCGGAGCTCTCTGTCTaGATGGCTTTGATATGTAGG +
Preference number: 5 (lower is better)
Translates to: DFLFLGKASSTSRPCLFLPELSV*MALICR
Trigger: CCTACATATCAAAGCCATCAAGACAGAGAGCTCCGG...TAGGAATAGGCAGGGCCTCGAGGTGGAAGAGGCCTTCCCCAGGAAAAGGAAGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTTAAAACATCTGCAAGAAGACCCCTGGGCATGGCCCAGAGCTGTCATTTGGAGGGGGACAACTTCCATTaGCTGAGGGAGTCCCAGGTG +
Preference number: 5 (lower is better)
Translates to: LKTSARRPLGMAQSCHLEGDNFH*LRESQV
Trigger: CACCTGGGACTCCCTCAGCAAATGGAAGTTGTCCCC...CTCCAAATGACAGCTCTGGGCCATGCCCAGGGGTCTTCTTGCAGATGTTTTAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCAGCGCGGTCTGAGGCATaGGAGAAGGCTTTGTTACAG +
Preference number: 5 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPARSEA*EKALLQ
Trigger: CTGTAACAAAGCCTTCTCCAATGCCTCAGACCGCGC...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp GCTTCATGGAAGAATCCAGGGGAAACAGTAATCCCTTTTCCTCCCAGGTGGCAGACAGGCATGTTGCTCTaGTTGAGGTTGGAGGAGGGG +
Preference number: 5 (lower is better)
Translates to: ASWKNPGETVIPFPPRWQTGMLL*LRLEEG
Trigger: CCCCTCCTCCAACCTCAACAAGAGCAACATGCCTGT...CTGCCACCTGGGAGGAAAAGGGATTACTGTTTCCCCTGGATTCTTCCATGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCAGATTGTGGAGAAGGGTaGGGCTCAGTGCACCAGAAA +
Preference number: 5 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPDCGEG*GSVHQK
Trigger: TTTCTGGTGCACTGAGCCCAACCCTTCTCCACAATC...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTGTTAACTCAAAGGAACAGGTTTGGGATACGCACATGTCTGTGGTGGTGGAGGCACTGCACAGGCATGTaGCTCTTGTTGAGGTTGGAG +
Preference number: 5 (lower is better)
Translates to: LLTQRNRFGIRTCLWWWRHCTGM*LLLRLE
Trigger: CTCCAACCTCAACAAGAGCAACATGCCTGTGCAGTG...CCTCCACCACCACAGACATGTGCGTATCCCAAACCTGTTCCTTTGAGTTAACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 90 bp GGTCAAAGGAGATATGGGGTGTCCTGGTCTATCCCTCTCCACCCTTaGAACAGGGTCTCTCACTGTCCTGTTGATTATTGTCAACTTGAC +
Preference number: 5 (lower is better)
Translates to: GQRRYGVSWSIPLHP*NRVSHCPVDYCQLD
Trigger: GTCAAGTTGACAATAATCAACAGGACAGTGAGAGACCCTGTTCCAAGGGTGGAGAGGGATAGACCAGGACACCCCATATCTCCTTTGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161301.8
CDS-3UTR CAA 90 bp CATGGGTTCACCCTGCAGTGCGCTCTGACTGACTCTTTTTGGAGTCAGTTTCCAGCATCATTTAGACAGTaGCTGCTACTGCTGCTGAGT +
Preference number: 5 (lower is better)
Translates to: HGFTLQCALTDSFWSQFPASFRQ*LLLLLS
Trigger: ACTCAGCAGCAGTAGCAGCAACTGTCTAAATGATGC...TGGAAACTGACTCCAAAAAGAGTCAGTCAGAGCGCACTGCAGGGTGAACCCATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGCTGTCCAGGTCTTCCTaGAGATCGGCCAGCTGCTCC +
Preference number: 5 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNELSRSS*RSASCS
Trigger: GGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAG...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGTACTTGGCACGCAGGTaGTACTGCTGCGCAGGTGTG +
Preference number: 5 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNEYLARR*YCCAGV
Trigger: CACACCTGCGCAGCAGTACAACCTGCGTGCCAAGTA...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGGGCTTGGCTGCCATATaGCTGCAGGAGGGAGAAAAC +
Preference number: 5 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNEGLAAI*LQEGEN
Trigger: GTTTTCTCCCTCCTGCAGCAATATGGCAGCCAAGCC...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp TCTTCCCAGGGAGGGCTTCACTGTATACCTCAGAACACTGTAAACAGGCCAGGAATCATGTTTAAAAACTaGCTCTCTTCAGCCAGGCTG +
Preference number: 5 (lower is better)
Translates to: SSQGGLHCIPQNTVNRPGIMFKN*LSSARL
Trigger: CAGCCTGGCTGAAGAGAGCAAGTTTTTAAACATGAT...TCCTGGCCTGTTTACAGTGTTCTGAGGTATACAGTGAAGCCCTCCCTGGGAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp ACACAAAATAGATACAGACAGAATGGGAAGCTAGGGTCTATGTCAGGCAATGAGTCTGCTGTCTCTTGGTaGGCTGATGTGACCATGGCT +
Preference number: 5 (lower is better)
Translates to: TQNRYRQNGKLGSMSGNESAVSW*ADVTMA
Trigger: AGCCATGGTCACATCAGCCAACCAAGAGACAGCAGA...CTCATTGCCTGACATAGACCCTAGCTTCCCATTCTGTCTGTATCTATTTTGTGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp GCAAACTCATCTTCTCAGAGCAGAGAATATCCAGCATGGTCTCAGATTCAAACCGAATCCTTCAGTGACTaGAGCTTCTCTCTCTTCAGC +
Preference number: 5 (lower is better)
Translates to: ANSSSQSREYPAWSQIQTESFSD*SFSLFS
Trigger: GCTGAAGAGAGAGAAGCTCAAGTCACTGAAGGATTC...GGTTTGAATCTGAGACCATGCTGGATATTCTCTGCTCTGAGAAGATGAGTTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACATCCAGGACAGAACCATaGACTGGAAGGGGAGGCAGC +
Preference number: 5 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTSRTEP*TGRGGS
Trigger: GCTGCCTCCCCTTCCAGTCAATGGTTCTGTCCTGGA...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACAGACCCCGTGCTCCCGTaGATGGCCATTCATGATGGT +
Preference number: 5 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTDPVLP*MAIHDG
Trigger: ACCATCATGAATGGCCATCAACGGGAGCACGGGGTC...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACAGCATTGGAGAAGGCTTaGTTACAGCCTTCGTGTTCA +
Preference number: 5 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTALEKA*LQPSCS
Trigger: TGAACACGAAGGCTGTAACAAAGCCTTCTCCAATGC...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACATCTGTCTTGATGGCTTaGATATGTAGGCAGTCCTCC +
Preference number: 5 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTSVLMA*ICRQSS
Trigger: GGAGGACTGCCTACATATCAAAGCCATCAAGACAGA...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS-3UTR CAA 90 bp CTAAAAATGTTTGGCAATATAAATTTGGCTGGACCAAATTTGGATTCACCCACATTCTGCTTGTTCTGGTaGGCATCATTTAGACAGTTG +
Preference number: 5 (lower is better)
Translates to: LKMFGNINLAGPNLDSPTFCLFW*ASFRQL
Trigger: CAACTGTCTAAATGATGCCAACCAGAACAAGCAGAA...TGTGGGTGAATCCAAATTTGGTCCAGCCAAATTTATATTGCCAAACATTTTTAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp CAGGGCGCCGCACAGGGTCGCTGGCCCGCCGTGTGCTaGTGTTTGGCCCCTCGTGGGGGAATGCTGGAGCCG +
Preference number: 6 (lower is better)
Translates to: QGAAQGRWPAVC*CLAPRGGMLEP
Trigger: CGGCTCCAGCATTCCCCCACGAGGGGCCAAACAGCAGCACACGGCGGGCCAGCGACCCTGTGCGGCGCCCTG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp GGTCAGGGCGCCGCACAGGGTCGCTGGCCCGCCGTGTaGTGCTGTTTGGCCCCTCGTGGGGGAATGCTGGAG +
Preference number: 6 (lower is better)
Translates to: GQGAAQGRWPAV*CCLAPRGGMLE
Trigger: CTCCAGCATTCCCCCACGAGGGGCCAAACAGCAGCACACGGCGGGCCAGCGACCCTGTGCGGCGCCCTGACC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp CCGCACAGGGTCGCTGGCCCGCCGTGTGCTGCTGTTTaGCCCCTCGTGGGGGAATGCTGGAGCCGCACCTGC +
Preference number: 6 (lower is better)
Translates to: PHRVAGPPCAAV*PLVGECWSRTC
Trigger: GCAGGTGCGGCTCCAGCATTCCCCCACGAGGGGCCAAACAGCAGCACACGGCGGGCCAGCGACCCTGTGCGG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 72 bp GCCGCACAGGGTCGCTGGCCCGCCGTGTGCTGCTGTTaGGCCCCTCGTGGGGGAATGCTGGAGCCGCACCTG +
Preference number: 6 (lower is better)
Translates to: AAQGRWPAVCCC*APRGGMLEPHL
Trigger: CAGGTGCGGCTCCAGCATTCCCCCACGAGGGGCCAAACAGCAGCACACGGCGGGCCAGCGACCCTGTGCGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 90 bp GGTCAGGGCGCCGCACAGGGTCGCTGGCCCGCCGTGTGCTGCTGTTaGGCCCCTCGTGGGGGAATGCTGGAGCCGCACCTGCGTAGCCAT +
Preference number: 6 (lower is better)
Translates to: GQGAAQGRWPAVCCC*APRGGMLEPHLRSH
Trigger: ATGGCTACGCAGGTGCGGCTCCAGCATTCCCCCACGAGGGGCCAAACAGCAGCACACGGCGGGCCAGCGACCCTGTGCGGCGCCCTGACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp CGGCAGTGGCGTGGGCGGTGGTCCACCTGTGGCCGCTaGGTACTTGGCACGCAGGTTGTACTGCTGCGCAGG +
Preference number: 6 (lower is better)
Translates to: RQWRGRWSTCGR*VLGTQVVLLRR
Trigger: CCTGCGCAGCAGTACAACCTGCGTGCCAAGTACGCAGCGGCCACAGGTGGACCACCGCCCACGCCACTGCCG
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GCGGGTACGAAGGCTTACACGATCGAGGCCCGGCAGTaGCGTGGGCGGTGGTCCACCTGTGGCCGCTGCGTA +
Preference number: 6 (lower is better)
Translates to: AGTKAYTIEARQ*RGRWSTCGRCV
Trigger: TACGCAGCGGCCACAGGTGGACCACCGCCCACGCCACTGCCGGGCCTCGATCGTGTAAGCCTTCGTACCCGC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 90 bp CCCGGCAGTGGCGTGGGCGGTGGTCCACCTGTGGCCGCTGCGTACTaGGCACGCAGGTTGTACTGCTGCGCAGGTGTGAGGTTGAGCAGC +
Preference number: 6 (lower is better)
Translates to: PGSGVGGGPPVAAAY*ARRLYCCAGVRLSS
Trigger: GCTGCTCAACCTCACACCTGCGCAGCAGTACAACCTGCGTGCCAAGTACGCAGCGGCCACAGGTGGACCACCGCCCACGCCACTGCCGGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp CCGTGGCCCCAGTGGATGTGGGCAGGCACCAGGAAGTaGACGCTCAGGAGCATCCAGCAAGGCCAGGCGGGT +
Preference number: 6 (lower is better)
Translates to: PWPQWMWAGTRK*TLRSIQQGQAG
Trigger: ACCCGCCTGGCCTTGCTGGATGCTCCTGAGCGTGCACTTCCTGGTGCCTGCCCACATCCACTGGGGCCACGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp CGGCTGGCCGTGTTGGGTTCCAGGGGTGGCCGAGGCTaGATGAGACCAAAGCCCGCGTTCTGCTGGGACTCC +
Preference number: 6 (lower is better)
Translates to: RLAVLGSRGGRG*MRPKPAFCWDS
Trigger: GGAGTCCCAGCAGAACGCGGGCTTTGGTCTCATGCAGCCTCGGCCACCCCTGGAACCCAACACGGCCAGCCG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp CTCAGCATCGTCACTTCGGTCAGCTCTGGTAGCCGCTaGCTGGGCAGCAGTCCTGCCGGTCCACCGCCCCCT +
Preference number: 6 (lower is better)
Translates to: LSIVTSVSSGSR*LGSSPAGPPPP
Trigger: AGGGGGCGGTGGACCGGCAGGACTGCTGCCCAGCCAGCGGCTACCAGAGCTGACCGAAGTGACGATGCTGAG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp AGGCCCATCGCTGCCACGCCGTGGCCCCAGTGGATGTaGGCAGGCACCAGGAAGTGCACGCTCAGGAGCATC +
Preference number: 6 (lower is better)
Translates to: RPIAATPWPQWM*AGTRKCTLRSI
Trigger: GATGCTCCTGAGCGTGCACTTCCTGGTGCCTGCCCACATCCACTGGGGCCACGGCGTGGCAGCGATGGGCCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GGGGGTGGGCTTGGCTGTAGCTGGCCTGCGGGCTCATaGCCGCACTCATACCCAGGCACTGACTGCCTGCAG +
Preference number: 6 (lower is better)
Translates to: GGGLGCSWPAGS*PHSYPGTDCLQ
Trigger: CTGCAGGCAGTCAGTGCCTGGGTATGAGTGCGGCCATGAGCCCGCAGGCCAGCTACAGCCAAGCCCACCCCC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 72 bp GGCGTGGGCGGTGGTCCACCTGTGGCCGCTGCGTACTaGGCACGCAGGTTGTACTGCTGCGCAGGTGTGAGG +
Preference number: 6 (lower is better)
Translates to: GVGGGPPVAAAY*ARRLYCCAGVR
Trigger: CCTCACACCTGCGCAGCAGTACAACCTGCGTGCCAAGTACGCAGCGGCCACAGGTGGACCACCGCCCACGCC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 72 bp GCCTGCGGGCTCATGGCCGCACTCATACCCAGGCACTaGCTGCCTGCAGCTGGCTGTCGAGGCTGTTGCGTG +
Preference number: 6 (lower is better)
Translates to: ACGLMAALIPRH*LPAAGCRGCCV
Trigger: CACGCAACAGCCTCGACAGCCAGCTGCAGGCAGTCAGTGCCTGGGTATGAGTGCGGCCATGAGCCCGCAGGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp CAGGAGCTGCTGAGGAACTCCGTGGGCGGCTACAGCTaGGGCCACCGCCAGAGGACAGGCCTTTTTCCCTGG +
Preference number: 6 (lower is better)
Translates to: QELLRNSVGGYS*GHRQRTGLFPW
Trigger: CCAGGGAAAAAGGCCTGTCCTCTGGCGGTGGCCGCAGCTGTAGCCGCCCACGGAGTTCCTCAGCAGCTCCTG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000062483.15
ENSMUST00000159839.8
ENSMUST00000161056.8
ENSMUST00000162552.8
CDS GCA 72 bp GACACAGCTGGCGTTACCTCCGTGGGCGGCTACAGCTaGGGCCACCGCCAGAGGACAGGCCTTTTTCCCTGG +
Preference number: 6 (lower is better)
Translates to: DTAGVTSVGGYS*GHRQRTGLFPW
Trigger: CCAGGGAAAAAGGCCTGTCCTCTGGCGGTGGCCGCAGCTGTAGCCGCCCACGGAGGTAACGCCAGCTGTGTC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000161301.8
CDS CCA 72 bp GCATCGTCACTTCGGTCAGCTCTGGTAGCCGCTGGCTaGGCAGCAGTCCTGCCGGTCCACCGCCCCCTGTAT +
Preference number: 6 (lower is better)
Translates to: ASSLRSALVAAG*AAVLPVHRPLY
Trigger: ATACAGGGGGCGGTGGACCGGCAGGACTGCTGCCCAGCCAGCGGCTACCAGAGCTGACCGAAGTGACGATGC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GTGAGGTTGAGCAGCCCTGGGCCACCGCCACTGCACTaGCTGGCTTCACTGGAGCGCCGAGAGGCATCTGTG +
Preference number: 6 (lower is better)
Translates to: VRLSSPGPPPLH*LASLERREASV
Trigger: CACAGATGCCTCTCGGCGCTCCAGTGAAGCCAGCCAGTGCAGTGGCGGTGGCCCAGGGCTGCTCAACCTCAC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp TACGAAGGCTTACACGATCGAGGCCCGGCAGTGGCGTaGGCGGTGGTCCACCTGTGGCCGCTGCGTACTTGG +
Preference number: 6 (lower is better)
Translates to: YEGLHDRGPAVA*AVVHLWPLRTW
Trigger: CCAAGTACGCAGCGGCCACAGGTGGACCACCGCCCACGCCACTGCCGGGCCTCGATCGTGTAAGCCTTCGTA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp ATAGGTAGGCCCATCGCTGCCACGCCGTGGCCCCAGTaGATGTGGGCAGGCACCAGGAAGTGCACGCTCAGG +
Preference number: 6 (lower is better)
Translates to: IGRPIAATPWPQ*MWAGTRKCTLR
Trigger: CCTGAGCGTGCACTTCCTGGTGCCTGCCCACATCCACTGGGGCCACGGCGTGGCAGCGATGGGCCTACCTAT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp TGTTTGGGCTCAGCTGGGGGTGGGCTTGGCTGTAGCTaGCCTGCGGGCTCATGGCCGCACTCATACCCAGGC +
Preference number: 6 (lower is better)
Translates to: CLGSAGGGLGCS*PAGSWPHSYPG
Trigger: GCCTGGGTATGAGTGCGGCCATGAGCCCGCAGGCCAGCTACAGCCAAGCCCACCCCCAGCTGAGCCCAAACA
67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GACTGGAAGGGGAGGCAGCTTGGTGTTGCGGGTGTGTaGAGCTGGGCCGGCCCACGAGCAGGAATCCTTCAG +
Preference number: 6 (lower is better)
Translates to: DWKGRQLGVAGV*SWAGPRAGILQ
Trigger: CTGAAGGATTCCTGCTCGTGGGCCGGCCCAGCTCCACACACCCGCAACACCAAGCTGCCTCCCCTTCCAGTC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp ACCATGGCTATAGGTAGGCCCATCGCTGCCACGCCGTaGCCCCAGTGGATGTGGGCAGGCACCAGGAAGTGC +
Preference number: 6 (lower is better)
Translates to: TMAIGRPIAATP*PQWMWAGTRKC
Trigger: GCACTTCCTGGTGCCTGCCCACATCCACTGGGGCCACGGCGTGGCAGCGATGGGCCTACCTATAGCCATGGT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GGCAGCCCCCGAGTCCAGGAGCAGAAGGACCCATGTTaGAGTCGGCAGCTGCTAGCCTGCGGTGGCCTTGTA +
Preference number: 6 (lower is better)
Translates to: GSPRVQEQKDPC*SRQLLACGGLV
Trigger: TACAAGGCCACCGCAGGCTAGCAGCTGCCGACTCCAACATGGGTCCTTCTGCTCCTGGACTCGGGGGCTGCC
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GGGGTCACACGTGGACTAGAGAATCGTGATGCTCCGTaGGCGGCTACAGCTGCGGCCACCGCCAGAGGACAG +
Preference number: 6 (lower is better)
Translates to: GVTRGLENRDAP*AATAAATARGQ
Trigger: CTGTCCTCTGGCGGTGGCCGCAGCTGTAGCCGCCCACGGAGCATCACGATTCTCTAGTCCACGTGTGACCCC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000161451.8
CDS CAA 72 bp TGGCAGCCCCCGAGTCCAGGAGCAGAAGGACCCATGTaGGAGTCGGCAGCTGCTAGCCTGCGGTGGCCTTGT +
Preference number: 6 (lower is better)
Translates to: WQPPSPGAEGPM*ESAAASLRWPC
Trigger: ACAAGGCCACCGCAGGCTAGCAGCTGCCGACTCCAACATGGGTCCTTCTGCTCCTGGACTCGGGGGCTGCCA
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp GTCAGGTTGCTGTCTACGCTGGGGTGGCTCTGTACGTaGAGGCCACGCCGATCAGCGCAGGGTGGCAGTGAA +
Preference number: 6 (lower is better)
Translates to: VRLLSTLGWLCT*RPRRSAQGGSE
Trigger: TTCACTGCCACCCTGCGCTGATCGGCGTGGCCTGCACGTACAGAGCCACCCCAGCGTAGACAGCAACCTGAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp CCTCTTGATGCAGAGGGGGCTCCTCGAAGCTGTAGGTaGGGCTGGGTGCTGTCTAGACCTCCGGAGCTGCTC +
Preference number: 6 (lower is better)
Translates to: PLDAEGAPRSCR*GWVLSRPPELL
Trigger: GAGCAGCTCCGGAGGTCTAGACAGCACCCAGCCGCACCTACAGCTTCGAGGAGCCCCCTCTGCATCAAGAGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp GCTCATGGCCGCACTCATACCCAGGCACTGACTGCCTaGAGCTGGCTGTCGAGGCTGTTGCGTGTAGCTCCC +
Preference number: 6 (lower is better)
Translates to: AHGRTHTQALTA*SWLSRLLRVAP
Trigger: GGGAGCTACACGCAACAGCCTCGACAGCCAGCTGCAGGCAGTCAGTGCCTGGGTATGAGTGCGGCCATGAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp ACTGGCCTCCACACTCTCCTCAGGTCCCCGGCCACCTaGCTCGGCGCTGGCCTCATTATCCCCATTCTCCTT +
Preference number: 6 (lower is better)
Translates to: TGLHTLLRSPAT*LGAGLIIPILL
Trigger: AAGGAGAATGGGGATAATGAGGCCAGCGCCGAGCCAGGTGGCCGGGGACCTGAGGAGAGTGTGGAGGCCAGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GAGAGTAGGCGTTGCGGGTCAGGTTGCTGTCTACGCTaGGGTGGCTCTGTACGTGCAGGCCACGCCGATCAG +
Preference number: 6 (lower is better)
Translates to: ESRRCGSGCCLR*GGSVRAGHADQ
Trigger: CTGATCGGCGTGGCCTGCACGTACAGAGCCACCCCAGCGTAGACAGCAACCTGACCCGCAACGCCTACTCTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GGCTCCAGGAGCTGGGAGTCCACGGTGCTAGACACCTaGTTGACTCCCGGTGAAGGCAAAGGCTCAGGCTGG +
Preference number: 6 (lower is better)
Translates to: GSRSWESTVLDT*LTPGEGKGSGW
Trigger: CCAGCCTGAGCCTTTGCCTTCACCGGGAGTCAACCAGGTGTCTAGCACCGTGGACTCCCAGCTCCTGGAGCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 72 bp GCATACAACTGCTGTTGCCCAGAACGTACTCCACGGTaGCGGCTGGCCGTGTTGGGTTCCAGGGGTGGCCGA +
Preference number: 6 (lower is better)
Translates to: AYNCCCPERTPR*RLAVLGSRGGR
Trigger: TCGGCCACCCCTGGAACCCAACACGGCCAGCCGTCACCGTGGAGTACGTTCTGGGCAACAGCAGTTGTATGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp TCAAAGCGATGCACGGTGCTCATGTGTTTGCGCAGCTaGAGGCCACCAGTGGAGGGTGCAGCCAGGGCTGAG +
Preference number: 6 (lower is better)
Translates to: SKRCTVLMCLRS*RPPVEGAARAE
Trigger: CTCAGCCCTGGCTGCACCCTCCACTGGTGGCCTGCAGCTGCGCAAACACATGAGCACCGTGCATCGCTTTGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp TTGGACCACAGCCAGGTTGCTGTGAGGGAAAGGAGGTaGCTTCACCTGGGTAGGCAGGGCATCCACGGTGCC +
Preference number: 6 (lower is better)
Translates to: LDHSQVAVRERR*LHLGRQGIHGA
Trigger: GGCACCGTGGATGCCCTGCCTACCCAGGTGAAGCCACCTCCTTTCCCTCACAGCAACCTGGCTGTGGTCCAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 90 bp TCAGCCAGGCTGGTGAGCATGGAACTCATGTCGCCCACGGCCATGTaGCTGATGCCCGCAGGGATGGAGGGCAGTGTCAAGGAATTCCGG +
Preference number: 6 (lower is better)
Translates to: SARLVSMELMSPTAM*LMPAGMEGSVKEFR
Trigger: CCGGAATTCCTTGACACTGCCCTCCATCCCTGCGGGCATCAGCAACATGGCCGTGGGCGACATGAGTTCCATGCTCACCAGCCTGGCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp TCAGCTGCTCAAAGCGATGCACGGTGCTCATGTGTTTaGGCAGCTGCAGGCCACCAGTGGAGGGTGCAGCCA +
Preference number: 6 (lower is better)
Translates to: SAAQSDARCSCV*AAAGHQWRVQP
Trigger: TGGCTGCACCCTCCACTGGTGGCCTGCAGCTGCGCAAACACATGAGCACCGTGCATCGCTTTGAGCAGCTGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp TGGCTTCACTGGAGCGCCGAGAGGCATCTGTGGAGATaGGGTCATAGGAGTCTGCTGAGCTGGCGTTGTGCG +
Preference number: 6 (lower is better)
Translates to: WLHWSAERHLWR*GHRSLLSWRCA
Trigger: CGCACAACGCCAGCTCAGCAGACTCCTATGACCCCATCTCCACAGATGCCTCTCGGCGCTCCAGTGAAGCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 72 bp CTGGTGAGCATGGAACTCATGTCGCCCACGGCCATGTaGCTGATGCCCGCAGGGATGGAGGGCAGTGTCAAG +
Preference number: 6 (lower is better)
Translates to: LVSMELMSPTAM*LMPAGMEGSVK
Trigger: CTTGACACTGCCCTCCATCCCTGCGGGCATCAGCAACATGGCCGTGGGCGACATGAGTTCCATGCTCACCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 90 bp ACCACCTCGGCCTCCTGCTTACAGTCATCCCTGTCCAGGTCTTCCTaGAGATCGGCCAGCTGCTCCTGTGTCAGTCCAAGCGGGGATGCT +
Preference number: 6 (lower is better)
Translates to: TTSASCLQSSLSRSS*RSASCSCVSPSGDA
Trigger: AGCATCCCCGCTTGGACTGACACAGGAGCAGCTGGCCGATCTCAAGGAAGACCTGGACAGGGATGACTGTAAGCAGGAGGCCGAGGTGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 90 bp TTCTCTCTCTTCAGCTGCTCAAAGCGATGCACGGTGCTCATGTGTTaGCGCAGCTGCAGGCCACCAGTGGAGGGTGCAGCCAGGGCTGAG +
Preference number: 6 (lower is better)
Translates to: FSLFSCSKRCTVLMC*RSCRPPVEGAARAE
Trigger: CTCAGCCCTGGCTGCACCCTCCACTGGTGGCCTGCAGCTGCGCAAACACATGAGCACCGTGCATCGCTTTGAGCAGCTGAAGAGAGAGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 90 bp TTTTCCAGGACAGAACCATTGACTGGAAGGGGAGGCAGCTTGGTGTaGCGGGTGTGTGGAGCTGGGCCGGCCCACGAGCAGGAATCCTTC +
Preference number: 6 (lower is better)
Translates to: FSRTEPLTGRGGSLV*RVCGAGPAHEQESF
Trigger: GAAGGATTCCTGCTCGTGGGCCGGCCCAGCTCCACACACCCGCAACACCAAGCTGCCTCCCCTTCCAGTCAATGGTTCTGTCCTGGAAAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp GAGGGAGTCCCAGGTGGCTGGGCTTGGCTGCCATATTaGTGCAGGAGGGAGAAAACTGGTTCAGAGATCCGC +
Preference number: 6 (lower is better)
Translates to: EGVPGGWAWLPY*CRREKTGSEIR
Trigger: GCGGATCTCTGAACCAGTTTTCTCCCTCCTGCAGCAATATGGCAGCCAAGCCCAGCCACCTGGGACTCCCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GCAAGCTTGTGGTTGTGGCGGCTGGGGCTGCACGGCTaGGCAGCCTCCATTCTGTTCATACATGTGGATCTG +
Preference number: 6 (lower is better)
Translates to: ASLWLWRLGLHG*AASILFIHVDL
Trigger: CAGATCCACATGTATGAACAGAATGGAGGCTGCCCAGCCGTGCAGCCCCAGCCGCCACAACCACAAGCTTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp ATTATTGTCAACTTGACACAGCTGGCGTTACCTCCGTaGGCGGCTACAGCTGCGGCCACCGCCAGAGGACAG +
Preference number: 6 (lower is better)
Translates to: IIVNLTQLALPP*AATAAATARGQ
Trigger: CTGTCCTCTGGCGGTGGCCGCAGCTGTAGCCGCCCACGGAGGTAACGCCAGCTGTGTCAAGTTGACAATAAT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161301.8
CDS CAA 72 bp TCCAGGAGCTGGGAGTCCACGGTGCTAGACACCTGGTaGACTCCCGGTGAAGGCAAAGGCTCAGGCTGGATA +
Preference number: 6 (lower is better)
Translates to: SRSWESTVLDTW*TPGEGKGSGWI
Trigger: TATCCAGCCTGAGCCTTTGCCTTCACCGGGAGTCAACCAGGTGTCTAGCACCGTGGACTCCCAGCTCCTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 90 bp CCCCGGCCACCTGGCTCGGCGCTGGCCTCATTATCCCCATTCTCCTaGAGCAGTGGAGCACGGACATGCACATCATTACGCTGTTTCTTG +
Preference number: 6 (lower is better)
Translates to: PRPPGSALASLSPFS*SSGARTCTSLRCFL
Trigger: CAAGAAACAGCGTAATGATGTGCATGTCCGTGCTCCACTGCTCAAGGAGAATGGGGATAATGAGGCCAGCGCCGAGCCAGGTGGCCGGGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 90 bp GTGTGTGGAGCTGGGCCGGCCCACGAGCAGGAATCCTTCAGTGACTaGAGCTTCTCTCTCTTCAGCTGCTCAAAGCGATGCACGGTGCTC +
Preference number: 6 (lower is better)
Translates to: VCGAGPAHEQESFSD*SFSLFSCSKRCTVL
Trigger: GAGCACCGTGCATCGCTTTGAGCAGCTGAAGAGAGAGAAGCTCAAGTCACTGAAGGATTCCTGCTCGTGGGCCGGCCCAGCTCCACACAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 72 bp TGGAGCTGGGCCGGCCCACGAGCAGGAATCCTTCAGTaGCTTGAGCTTCTCTCTCTTCAGCTGCTCAAAGCG +
Preference number: 6 (lower is better)
Translates to: WSWAGPRAGILQ*LELLSLQLLKA
Trigger: CGCTTTGAGCAGCTGAAGAGAGAGAAGCTCAAGTCACTGAAGGATTCCTGCTCGTGGGCCGGCCCAGCTCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 72 bp TGCTGCAGGAGGGAGAAAACTGGTTCAGAGATCCGCTaGCAATGTTTGGGCTCAGCTGGGGGTGGGCTTGGC +
Preference number: 6 (lower is better)
Translates to: CCRREKTGSEIR*QCLGSAGGGLG
Trigger: GCCAAGCCCACCCCCAGCTGAGCCCAAACATTGTCAGCGGATCTCTGAACCAGTTTTCTCCCTCCTGCAGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp GCTTCTCTCTCTTCAGCTGCTCAAAGCGATGCACGGTaGTCATGTGTTTGCGCAGCTGCAGGCCACCAGTGG +
Preference number: 6 (lower is better)
Translates to: ASLSSAAQSDAR*SCVCAAAGHQW
Trigger: CCACTGGTGGCCTGCAGCTGCGCAAACACATGAGCACCGTGCATCGCTTTGAGCAGCTGAAGAGAGAGAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp GAGCTCATGGTGCTGGTGGAGCTGTCTCTTCGTTCCTaGAGCTGGCTCAGCATCGTCACTTCGGTCAGCTCT +
Preference number: 6 (lower is better)
Translates to: ELMVLVELSLRS*SWLSIVTSVSS
Trigger: AGAGCTGACCGAAGTGACGATGCTGAGCCAGCTGCAGGAACGAAGAGACAGCTCCACCAGCACCATGAGCTC
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GGGAGAAAACTGGTTCAGAGATCCGCTGACAATGTTTaGGCTCAGCTGGGGGTGGGCTTGGCTGTAGCTGGC +
Preference number: 6 (lower is better)
Translates to: GRKLVQRSADNV*AQLGVGLAVAG
Trigger: GCCAGCTACAGCCAAGCCCACCCCCAGCTGAGCCCAAACATTGTCAGCGGATCTCTGAACCAGTTTTCTCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp CCTGCTGGTCCCTTGGGCATAGCTTCTGCTGTCTCTTaGTTGGCTGATGTGACCATGGCTTGGCCAGTGGTC +
Preference number: 6 (lower is better)
Translates to: PAGPLGIASAVS*LADVTMAWPVV
Trigger: GACCACTGGCCAAGCCATGGTCACATCAGCCAACCAAGAGACAGCAGAAGCTATGCCCAAGGGACCAGCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp ACCTGGTTGACTCCCGGTGAAGGCAAAGGCTCAGGCTaGATACTGTCTGAGCAAGCTTGTGGTTGTGGCGGC +
Preference number: 6 (lower is better)
Translates to: TWLTPGEGKGSG*ILSEQACGCGG
Trigger: GCCGCCACAACCACAAGCTTGCTCAGACAGTATCCAGCCTGAGCCTTTGCCTTCACCGGGAGTCAACCAGGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 72 bp CCTGGCTCGGCGCTGGCCTCATTATCCCCATTCTCCTaGAGCAGTGGAGCACGGACATGCACATCATTACGC +
Preference number: 6 (lower is better)
Translates to: PGSALASLSPFS*SSGARTCTSLR
Trigger: GCGTAATGATGTGCATGTCCGTGCTCCACTGCTCAAGGAGAATGGGGATAATGAGGCCAGCGCCGAGCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 72 bp CTGGCTCGGCGCTGGCCTCATTATCCCCATTCTCCTTaGGCAGTGGAGCACGGACATGCACATCATTACGCT +
Preference number: 6 (lower is better)
Translates to: LARRWPHYPHSP*AVEHGHAHHYA
Trigger: AGCGTAATGATGTGCATGTCCGTGCTCCACTGCTCAAGGAGAATGGGGATAATGAGGCCAGCGCCGAGCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 72 bp CCCTGCCGAATGCCGTCATCCAAGGTACCACCGGTGTaGGCCTTGATGTACTGTACCACATCATCTGGCAGC +
Preference number: 6 (lower is better)
Translates to: PCRMPSSKVPPV*ALMYCTTSSGS
Trigger: GCTGCCAGATGATGTGGTACAGTACATCAAGGCTCACACCGGTGGTACCTTGGATGACGGCATTCGGCAGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 72 bp GTTCTGCTGGGACTCCATGAAGCCAGGCTGATGGGATaGCAGAAGGTTGGAGCCCTGTTGGTAGCTGTCCTG +
Preference number: 6 (lower is better)
Translates to: VLLGLHEARLMG*QKVGALLVAVL
Trigger: CAGGACAGCTACCAACAGGGCTCCAACCTTCTGTCATCCCATCAGCCTGGCTTCATGGAGTCCCAGCAGAAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 72 bp GGGCAGTGTCAAGGAATTCCGGGGTGTGGTGAGGCGTaGGGAATTCTGGGAGAGATTGTGGAGAAGGGTTGG +
Preference number: 6 (lower is better)
Translates to: GQCQGIPGCGEA*GILGEIVEKGW
Trigger: CCAACCCTTCTCCACAATCTCTCCCAGAATTCCTCACGCCTCACCACACCCCGGAATTCCTTGACACTGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp CCAGAGGACAGGCCTTTTTCCCTGGGTCGGGGAAGCTaGTGTCCTCCAAGAGACCACTCTTGGCTTCTTTCT +
Preference number: 6 (lower is better)
Translates to: PEDRPFSLGRGS*CPPRDHSWLLS
Trigger: AGAAAGAAGCCAAGAGTGGTCTCTTGGAGGACAGCAGCTTCCCCGACCCAGGGAAAAAGGCCTGTCCTCTGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000062483.15
ENSMUST00000159839.8
ENSMUST00000160991.8
ENSMUST00000161056.8
ENSMUST00000161301.8
ENSMUST00000161451.8
ENSMUST00000162552.8
CDS GCA 72 bp CATTTGCTGAGGGAGTCCCAGGTGGCTGGGCTTGGCTaGCATATTGCTGCAGGAGGGAGAAAACTGGTTCAG +
Preference number: 6 (lower is better)
Translates to: HLLRESQVAGLG*HIAAGGRKLVQ
Trigger: CTGAACCAGTTTTCTCCCTCCTGCAGCAATATGGCAGCCAAGCCCAGCCACCTGGGACTCCCTCAGCAAATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GGACAACTTCCATTTGCTGAGGGAGTCCCAGGTGGCTaGGCTTGGCTGCCATATTGCTGCAGGAGGGAGAAA +
Preference number: 6 (lower is better)
Translates to: GQLPFAEGVPGG*AWLPYCCRREK
Trigger: TTTCTCCCTCCTGCAGCAATATGGCAGCCAAGCCCAGCCACCTGGGACTCCCTCAGCAAATGGAAGTTGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 72 bp GGCAGCAGTCCTGCCGGTCCACCGCCCCCTGTATTGTaGAAGTTTTCCAGGACAGAACCATTGACTGGAAGG +
Preference number: 6 (lower is better)
Translates to: GSSPAGPPPPVL*KFSRTEPLTGR
Trigger: CCTTCCAGTCAATGGTTCTGTCCTGGAAAACTTCAACAATACAGGGGGCGGTGGACCGGCAGGACTGCTGCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 72 bp TCCCTTGGGCATAGCTTCTGCTGTCTCTTGGTTGGCTaGTGTGACCATGGCTTGGCCAGTGGTCCTGGCATA +
Preference number: 6 (lower is better)
Translates to: SLGHSFCCLLVG*CDHGLASGPGI
Trigger: TATGCCAGGACCACTGGCCAAGCCATGGTCACATCAGCCAACCAAGAGACAGCAGAAGCTATGCCCAAGGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 72 bp GGATGGAGGGCAGTGTCAAGGAATTCCGGGGTGTGGTaGGGCGTGAGGAATTCTGGGAGAGATTGTGGAGAA +
Preference number: 6 (lower is better)
Translates to: GWRAVSRNSGVW*GVRNSGRDCGE
Trigger: TTCTCCACAATCTCTCCCAGAATTCCTCACGCCTCACCACACCCCGGAATTCCTTGACACTGCCCTCCATCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp GACTTGAGCTTCTCTCTCTTCAGCTGCTCAAAGCGATaGACGGTGCTCATGTGTTTGCGCAGCTGCAGGCCA +
Preference number: 6 (lower is better)
Translates to: DLSFSLFSCSKR*TVLMCLRSCRP
Trigger: TGGCCTGCAGCTGCGCAAACACATGAGCACCGTGCATCGCTTTGAGCAGCTGAAGAGAGAGAAGCTCAAGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp TCTGCTGTCTCTTGGTTGGCTGATGTGACCATGGCTTaGCCAGTGGTCCTGGCATACAACTGCTGTTGCCCA +
Preference number: 6 (lower is better)
Translates to: SAVSWLADVTMA*PVVLAYNCCCP
Trigger: TGGGCAACAGCAGTTGTATGCCAGGACCACTGGCCAAGCCATGGTCACATCAGCCAACCAAGAGACAGCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp TTGATGGCTTTGATATGTAGGCAGTCCTCCACAGTGTaGCTGGTGCTACTGGCCTCCACACTCTCCTCAGGT +
Preference number: 6 (lower is better)
Translates to: LMALICRQSSTV*LVLLASTLSSG
Trigger: ACCTGAGGAGAGTGTGGAGGCCAGTAGCACCAGCCACACTGTGGAGGACTGCCTACATATCAAAGCCATCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp CTGCTCTGCACGGATTGTGGATTATATCCTGGATACTaGCCAAAGGCTGGCTTCTGTTGGACCACAGCCAGG +
Preference number: 6 (lower is better)
Translates to: LLCTDCGLYPGY*PKAGFCWTTAR
Trigger: CCTGGCTGTGGTCCAACAGAAGCCAGCCTTTGGCCAGTATCCAGGATATAATCCACAATCCGTGCAGAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp TCCGGAGCTGCTCTGCACGGATTGTGGATTATATCCTaGATACTGGCCAAAGGCTGGCTTCTGTTGGACCAC +
Preference number: 6 (lower is better)
Translates to: SGAALHGLWIIS*ILAKGWLLLDH
Trigger: GTGGTCCAACAGAAGCCAGCCTTTGGCCAGTATCCAGGATATAATCCACAATCCGTGCAGAGCAGCTCCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 72 bp AGTGGAGCACGGACATGCACATCATTACGCTGTTTCTaGGTGACATGGGCGTCTGGCCCATGGACAGTCTTC +
Preference number: 6 (lower is better)
Translates to: SGARTCTSLRCF*VTWASGPWTVF
Trigger: GAAGACTGTCCATGGGCCAGACGCCCATGTCACCAAGAAACAGCGTAATGATGTGCATGTCCGTGCTCCACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS TCA 72 bp GAGCACGGACATGCACATCATTACGCTGTTTCTTGGTaGCATGGGCGTCTGGCCCATGGACAGTCTTCACAT +
Preference number: 6 (lower is better)
Translates to: EHGHAHHYAVSW*HGRLAHGQSSH
Trigger: ATGTGAAGACTGTCCATGGGCCAGACGCCCATGTCACCAAGAAACAGCGTAATGATGTGCATGTCCGTGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GGCGCTGGCCTCATTATCCCCATTCTCCTTGAGCAGTaGAGCACGGACATGCACATCATTACGCTGTTTCTT +
Preference number: 6 (lower is better)
Translates to: GAGLIIPILLEQ*STDMHIITLFL
Trigger: AAGAAACAGCGTAATGATGTGCATGTCCGTGCTCCACTGCTCAAGGAGAATGGGGATAATGAGGCCAGCGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GGTGGCAGTGAACCTGGATTCATGTTGTGGGTACTGTaGAAACGTTGCACTCGAGGCAGAATAAGGGGGTCA +
Preference number: 6 (lower is better)
Translates to: GGSEPGFMLWVL*KRCTRGRIRGS
Trigger: TGACCCCCTTATTCTGCCTCGAGTGCAACGTTTCCACAGTACCCACAACATGAATCCAGGTTCACTGCCACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp GGATTGTGGATTATATCCTGGATACTGGCCAAAGGCTaGCTTCTGTTGGACCACAGCCAGGTTGCTGTGAGG +
Preference number: 6 (lower is better)
Translates to: GLWIISWILAKG*LLLDHSQVAVR
Trigger: CCTCACAGCAACCTGGCTGTGGTCCAACAGAAGCCAGCCTTTGGCCAGTATCCAGGATATAATCCACAATCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 72 bp ATTATATCCTGGATACTGGCCAAAGGCTGGCTTCTGTaGGACCACAGCCAGGTTGCTGTGAGGGAAAGGAGG +
Preference number: 6 (lower is better)
Translates to: IISWILAKGWLL*DHSQVAVRERR
Trigger: CCTCCTTTCCCTCACAGCAACCTGGCTGTGGTCCAACAGAAGCCAGCCTTTGGCCAGTATCCAGGATATAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS GCA 72 bp TTATCCCCATTCTCCTTGAGCAGTGGAGCACGGACATaGACATCATTACGCTGTTTCTTGGTGACATGGGCG +
Preference number: 6 (lower is better)
Translates to: LSPFSLSSGART*TSLRCFLVTWA
Trigger: CGCCCATGTCACCAAGAAACAGCGTAATGATGTGCATGTCCGTGCTCCACTGCTCAAGGAGAATGGGGATAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CCA 72 bp TGTATTGTTGAAGTTTTCCAGGACAGAACCATTGACTaGAAGGGGAGGCAGCTTGGTGTTGCGGGTGTGTGG +
Preference number: 6 (lower is better)
Translates to: CIVEVFQDRTID*KGRQLGVAGVW
Trigger: CCACACACCCGCAACACCAAGCTGCCTCCCCTTCCAGTCAATGGTTCTGTCCTGGAAAACTTCAACAATACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15
CDS CAA 72 bp CTCTCCACCCTTGGAACAGGGTCTCTCACTGTCCTGTaGATTATTGTCAACTTGACACAGCTGGCGTTACCT +
Preference number: 6 (lower is better)
Translates to: LSTLGTGSLTVL*IIVNLTQLALP
Trigger: AGGTAACGCCAGCTGTGTCAAGTTGACAATAATCAACAGGACAGTGAGAGACCCTGTTCCAAGGGTGGAGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000161301.8
CDS GCA 72 bp ATTCTGGGAGAGATTGTGGAGAAGGGTTGGGCTCAGTaGACCAGAAAACAAACTCGAGTGATCACCATCATC +
Preference number: 6 (lower is better)
Translates to: ILGEIVEKGWAQ*TRKQTRVITII
Trigger: GATGATGGTGATCACTCGAGTTTGTTTTCTGGTGCACTGAGCCCAACCCTTCTCCACAATCTCTCCCAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000062483.15