RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GLCE (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032252

Ensembl transcript IDs: ENSMUST00000034785.8, ENSMUST00000185675.7

Found 243 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp ACGTCTGACAAGCCAAGCACTGACAGTGCTGTCACAGGCTCAGTGTaGCCTCTTAGGGGATTCTGGGATCACAAGATAAGTCAAGTAGCT +
Preference number: 1 (lower is better)
Translates to: TSDKPSTDSAVTGSV*PLRGFWDHKISQVA
Trigger: AGCTACTTGACTTATCTTGTGATCCCAGAATCCCCTAAGAGGTCACACTGAGCCTGTGACAGCACTGTCAGTGCTTGGCTTGTCAGACGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 90 bp CTGTACACCAACAAAGACAGAGGCCCTGCATCTGGAGAGTGCTTGTaGCATTTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGA +
Preference number: 1 (lower is better)
Translates to: LYTNKDRGPASGECL*HFYTPHRCREALER
Trigger: TCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAAATGTCACAAGCACTCTCCAGATGCAGGGCCTCTGTCTTTGTTGGTGTACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 90 bp TGTCACAAAATCAGTTCCACGATGATTTCACTGACTCCTCTCATCTaGAGACCAGTATGCAAACAGAAAGCAGAAGTCGGGGCCACTCCA +
Preference number: 1 (lower is better)
Translates to: CHKISSTMISLTPLI*RPVCKQKAEVGATP
Trigger: TGGAGTGGCCCCGACTTCTGCTTTCTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAGTGAAATCATCGTGGAACTGATTTTGTGACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 90 bp GACCACCCTCCAGGAGGGCATCCAGTAAACACATTATTGCATATTTaGCACATGGCATATACCCCACATGTACAATGGAGAAGCAAGGAA +
Preference number: 1 (lower is better)
Translates to: DHPPGGHPVNTLLHI*HMAYTPHVQWRSKE
Trigger: TTCCTTGCTTCTCCATTGTACATGTGGGGTATATGCCATGTGTCAAATATGCAATAATGTGTTTACTGGATGCCCTCCTGGAGGGTGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR GCA 90 bp AGTTTTGCTGTATATAAAACTAACATGTGCACATTGTGCTTGAACTaGAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGC +
Preference number: 1 (lower is better)
Translates to: SFAVYKTNMCTLCLN*KGCTALQRTTLQEG
Trigger: GCCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCACAATGTGCACATGTTAGTTTTATATACAGCAAAACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 90 bp ACACACTGCACTAGAGCAGACGTGGGGAAGACGATTATCAAACTTTaGCTGATTGTAGACCGTTTCATAAAACACAGCATGTCTGTGACT +
Preference number: 1 (lower is better)
Translates to: THCTRADVGKTIIKL*LIVDRFIKHSMSVT
Trigger: AGTCACAGACATGCTGTGTTTTATGAAACGGTCTACAATCAGTCAAAGTTTGATAATCGTCTTCCCCACGTCTGCTCTAGTGCAGTGTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR GCA 90 bp ATGCAACTGTTTCAGAAGACTAACTTTAAGGGTCTCTTCTTACAGTaGTGTGACCCACAAACCCAGAACACAGCATTTAAAGTGTGCGAC +
Preference number: 1 (lower is better)
Translates to: MQLFQKTNFKGLFLQ*CDPQTQNTAFKVCD
Trigger: GTCGCACACTTTAAATGCTGTGTTCTGGGTTTGTGGGTCACAGCACTGTAAGAAGAGACCCTTAAAGTTAGTCTTCTGAAACAGTTGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR GCA 90 bp GATGGCACACAGACAGCAGACACAGTAGCATCTTTTCTGTTTCAATaGTGGAATCGTTCAAAATTAAGCTTCAGAGAAACAGCAAGGACA +
Preference number: 1 (lower is better)
Translates to: DGTQTADTVASFLFQ*WNRSKLSFRETART
Trigger: TGTCCTTGCTGTTTCTCTGAAGCTTAATTTTGAACGATTCCAGCATTGAAACAGAAAAGATGCTACTGTGTCTGCTGTCTGTGTGCCATC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CCA 90 bp GTGACTCCTGAACACGACACTTCTCTTTTAAGGAGGAGGTACCAATaGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGCTTATA +
Preference number: 1 (lower is better)
Translates to: VTPEHDTSLLRRRYQ*SISKHQVCHKFRLI
Trigger: TATAAGCCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCTTAAAAGAGAAGTGTCGTGTTCAGGAGTCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 90 bp AACAAGTTTCATTTCAGTTGTGCTTATGTATGTGACCGTGAAACCTaGACACGGGCTGTGTTTAGATATACAGAGTTCAAGAAAACCATA +
Preference number: 1 (lower is better)
Translates to: NKFHFSCAYVCDRET*TRAVFRYTEFKKTI
Trigger: TATGGTTTTCTTGAACTCTGTATATCTAAACACAGCCCGTGTTCAGGTTTCACGGTCACATACATAAGCACAACTGAAATGAAACTTGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR GCA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGCAAAGACAGAGGCCCTaGATCTGGAGAGTGCTTGTG +
Preference number: 2 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGQRQRP*IWRVLV
Trigger: CACAAGCACTCTCCAGATGCAGGGCCTCTGTCTTTG...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGGCTGAGCTCTGCTGCTaGGCGACACAGAAGAGGCTG +
Preference number: 2 (lower is better)
Translates to: FYTPHRCREALERSRYIQAELCC*ATQKRL
Trigger: CAGCCTCTTCTGTGTCGCTCAGCAGCAGAGCTCAGC...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACGCTGAGCTCTGCTGCTaGGCGACACAGAAGAGGCTG +
Preference number: 2 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHAELCC*ATQKRL
Trigger: CAGCCTCTTCTGTGTCGCTCAGCAGCAGAGCTCAGC...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp ACTGACTCCTCTCATCTGAAGACCAGTATGCAAACAGAAAGCAGAAGTCGGGGCCTTGGTTCAGTGCACTaGCAGAGCGCTCTCCTCGAT +
Preference number: 2 (lower is better)
Translates to: TDSSHLKTSMQTESRSRGLGSVH*QSALLD
Trigger: ATCGAGGAGAGCGCTCTGTCAGTGCACTGAACCAAG...GCCCCGACTTCTGCTTTCTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp ACTGACTCCTCTCATCTGAAGACCAGTATGCAAACAGAAAGCAGAAGTCGGGGCCGTGAAAAGCAATGGTaGCAACCCAGGCAGGAGAGA +
Preference number: 2 (lower is better)
Translates to: TDSSHLKTSMQTESRSRGREKQW*QPRQER
Trigger: TCTCTCCTGCCTGGGTTGTCACCATTGCTTTTCACG...GCCCCGACTTCTGCTTTCTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR GCA 90 bp ACTGACTCCTCTCATCTGAAGACCAGTATGCAAACAGAAAGCAGAAGTCGGGGCGTGATACAGACACACTaGACTAGAGCAGACGTGGGG +
Preference number: 2 (lower is better)
Translates to: TDSSHLKTSMQTESRSRGVIQTH*TRADVG
Trigger: CCCCACGTCTGCTCTAGTGCAGTGTGTCTGTATCAC...GCCCCGACTTCTGCTTTCTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR GCA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGCAAACCAATCCCTGTTaGTTTTACCTAATGCCCGGA +
Preference number: 2 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGQTNPC*FYLMPG
Trigger: TCCGGGCATTAGGTAAAAGCAACAGGGATTGGTTTG...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR GCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCACAGCATTTAAAGTGTaGGACGTGCTGCTGAGCTCT +
Preference number: 2 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHATAFKV*DVLLSS
Trigger: AGAGCTCAGCAGCACGTCGCACACTTTAAATGCTGT...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR GCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCAAGTCAAGTAGCTGTTaGAACGTGGAAGGCAGTGGA +
Preference number: 2 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHAKSSSC*NVEGSG
Trigger: TCCACTGCCTTCCACGTTGCAACAGCTACTTGACTT...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCAACAAATCTGAGAAGTaGACAGTGTTCCCAGGTGGG +
Preference number: 2 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHANKSEK*TVFPGG
Trigger: CCCACCTGGGAACACTGTCCACTTCTCAGATTTGTT...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCAACACAGCATGTCTGTaGCTTCTTGTGCAGTCAACA +
Preference number: 2 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHANTACL*LLVQST
Trigger: TGTTGACTGCACAAGAAGTCACAGACATGCTGTGTT...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGCTTCGCTTTTATTGCTaGGACAAATGTGCATGTTCA +
Preference number: 2 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGLRFYC*DKCACS
Trigger: TGAACATGCACATTTGTCTCAGCAATAAAAGCGAAG...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGCTTGGTTCAGTGCACTaGCAGAGCGCTCTCCTCGAT +
Preference number: 2 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRLGSVH*QSALLD
Trigger: ATCGAGGAGAGCGCTCTGTCAGTGCACTGAACCAAG...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCCTTTACTGTGACTCCTaGACACGACACTTCTCTTTT +
Preference number: 2 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHALYCDS*TRHFSF
Trigger: AAAAGAGAAGTGTCGTGTTCAGGAGTCACAGTAAAG...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCGAAAAGCAACAGCAGTaGACTGCCATTTCTACATCA +
Preference number: 2 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHAEKQQQ*TAISTS
Trigger: TGATGTAGAAATGGCAGTTCACTGCTGTTGCTTTTC...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCACTTTCCCTCTTCAGTaGAAAAGGACAACCACATTG +
Preference number: 2 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHATFPLQ*KRTTTL
Trigger: CAATGTGGTTGTCCTTTTCCACTGAAGAGGGAAAGT...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 90 bp GGACCACCCTCCAGGAGGGCATCCAGTAAACACATTATTGCATATTaGACACATGGCATATACCCCACATGTACAATGGAGAAGCAAGGA +
Preference number: 2 (lower is better)
Translates to: GPPSRRASSKHIIAY*THGIYPTCTMEKQG
Trigger: TCCTTGCTTCTCCATTGTACATGTGGGGTATATGCCATGTGTCAAATATGCAATAATGTGTTTACTGGATGCCCTCCTGGAGGGTGGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGGGAGAGACTTTACTGTaGCTCCTGAACACGACACTT +
Preference number: 2 (lower is better)
Translates to: FYTPHRCREALERSRYIQGETLL*LLNTTL
Trigger: AAGTGTCGTGTTCAGGAGTCACAGTAAAGTCTCTCC...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGAGGACAGAAACGACGTaGAAAGCAATGGTGACAACC +
Preference number: 2 (lower is better)
Translates to: FYTPHRCREALERSRYIQRTETT*KAMVTT
Trigger: GGTTGTCACCATTGCTTTTCACGTCGTTTCTGTCCT...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGCTGACTCCTCTCATCTaGAGACCAGTATGCAAACAG +
Preference number: 2 (lower is better)
Translates to: FYTPHRCREALERSRYIQLTPLI*RPVCKQ
Trigger: CTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAG...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACCGACACAGAAGAGGCTaGAATGCACTTTTGGTTTCG +
Preference number: 2 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHRHRRG*NALLVS
Trigger: CGAAACCAAAAGTGCATTCCAGCCTCTTCTGTGTCG...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGAGCAGACACTGTCCATaGCATGAGGACTCTGAAACT +
Preference number: 2 (lower is better)
Translates to: FYTPHRCREALERSRYIQSRHCP*HEDSET
Trigger: AGTTTCAGAGTCCTCATGCCATGGACAGTGTCTGCT...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 90 bp GGAGTCTTCGCTTTTATTGCTGAGACAAATGTGCATGTTCAGATGTaGCTGAAACACCTCGTGTGTGAGAACCACAGAGGTAAAAGCTGG +
Preference number: 2 (lower is better)
Translates to: GVFAFIAETNVHVQM*LKHLVCENHRGKSW
Trigger: CCAGCTTTTACCTCTGTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAAAAGCGAAGACTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp CATGGCATGAGGACTCTGAAACTCACTTACAGATCTGATGGCACACAGACAGCACTCCCTCTCAAGAAATaGACCTATGGGAAAGAAACA +
Preference number: 2 (lower is better)
Translates to: HGMRTLKLTYRSDGTQTALPLKK*TYGKET
Trigger: TGTTTCTTTCCCATAGGTTCATTTCTTGAGAGGGAG...TGCTGTCTGTGTGCCATCAGATCTGTAAGTGAGTTTCAGAGTCCTCATGCCATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CCA 90 bp GTCTTCGCTTTTATTGCTGAGACAAATGTGCATGTTCAGATGTTGCTGAAACACAGAGGGCAGAGGTCTTaGTTCAGTGCACTGACAGAG +
Preference number: 2 (lower is better)
Translates to: VFAFIAETNVHVQMLLKHRGQRS*FSALTE
Trigger: CTCTGTCAGTGCACTGAACCAAGACCTCTGCCCTCT...GTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAAAAGCGAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CCA 90 bp AAGTGTCATTATTTGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAACTGTCTCAGAGGGCAGAGGTCTTaGTTCAGTGCACTGACAGAG +
Preference number: 2 (lower is better)
Translates to: KCHYLFLERVRLMLPNCLRGQRS*FSALTE
Trigger: CTCTGTCAGTGCACTGAACCAAGACCTCTGCCCTCT...GAGACAGTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 90 bp CAATGGAGAAGCAAGGAAACAATTACAAGAACAAACCAGCAGCTTTaGGTAAGAGTCTGTACACCAACAAAGACAGAGGCCCTGCATCTG +
Preference number: 2 (lower is better)
Translates to: QWRSKETITRTNQQL*VRVCTPTKTEALHL
Trigger: CAGATGCAGGGCCTCTGTCTTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTTTCCTTGCTTCTCCATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACCTTTACTGTGACTCCTaGACACGACACTTCTCTTTT +
Preference number: 2 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHLYCDS*TRHFSF
Trigger: AAAAGAGAAGTGTCGTGTTCAGGAGTCACAGTAAAG...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR GCA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGACAGCATTTAAAGTGTaGGACGTGCTGCTGAGCTCT +
Preference number: 2 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRTAFKV*DVLLSS
Trigger: AGAGCTCAGCAGCACGTCGCACACTTTAAATGCTGT...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR GCA 90 bp ACTGACTCCTCTCATCTGAAGACCAGTATGCAAACAGAAAGCAGAAGTCGGGGCAACAAATGCAACAAATaGTCACTCCCTCTCAAGAAA +
Preference number: 2 (lower is better)
Translates to: TDSSHLKTSMQTESRSRGNKCNK*SLPLKK
Trigger: TTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTT...GCCCCGACTTCTGCTTTCTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR GCA 90 bp CATGGCATGAGGACTCTGAAACTCACTTACAGATCTGATGGCACACAGACAGCAAACAAATGCAACAAATaGTCACTCCCTCTCAAGAAA +
Preference number: 2 (lower is better)
Translates to: HGMRTLKLTYRSDGTQTANKCNK*SLPLKK
Trigger: TTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTT...TGCTGTCTGTGTGCCATCAGATCTGTAAGTGAGTTTCAGAGTCCTCATGCCATG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CCA 90 bp AAGTGTCATTATTTGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAACTGTCTCCGACACAGAAGAGGCTaGAATGCACTTTTGGTTTCG +
Preference number: 2 (lower is better)
Translates to: KCHYLFLERVRLMLPNCLRHRRG*NALLVS
Trigger: CGAAACCAAAAGTGCATTCCAGCCTCTTCTGTGTCG...GAGACAGTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 90 bp GCCTTTAACATGCATCTGACCAGCAGCATGGATAAGTGTCATTATTaGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAACTGTCTCTAT +
Preference number: 2 (lower is better)
Translates to: AFNMHLTSSMDKCHY*FLERVRLMLPNCLY
Trigger: ATAGAGACAGTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTTATCCATGCTGCTGGTCAGATGCATGTTAAAGGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR GCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAATTCTGGAGGCAAAAATaGATGGGTCCCTGGCAGTGT +
Preference number: 2 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKFWRQK*MGPWQC
Trigger: ACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAA...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp AAGTGTCATTATTTGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAACTGTCTCCTCCCTCTCAAGAAATaGACCTATGGGAAAGAAACA +
Preference number: 2 (lower is better)
Translates to: KCHYLFLERVRLMLPNCLLPLKK*TYGKET
Trigger: TGTTTCTTTCCCATAGGTTCATTTCTTGAGAGGGAG...GAGACAGTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAAAGGACAGAAACGACGTaGAAAGCAATGGTGACAACC +
Preference number: 2 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKRTETT*KAMVTT
Trigger: GGTTGTCACCATTGCTTTTCACGTCGTTTCTGTCCT...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAACTGACTCCTCTCATCTaGAGACCAGTATGCAAACAG +
Preference number: 2 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKLTPLI*RPVCKQ
Trigger: CTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAG...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAAAACACAGCATGTCTGTaGCTTCTTGTGCAGTCAACA +
Preference number: 2 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKNTACL*LLVQST
Trigger: TGTTGACTGCACAAGAAGTCACAGACATGCTGTGTT...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAATGTAATACAGCACACTaGTTTCTAAAAGCCTGCTTT +
Preference number: 2 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKCNTAH*FLKACF
Trigger: AAAGCAGGCTTTTAGAAATCAGTGTGCTGTATTACA...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR TCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAAACGATTATCAAACTTTaGCTGATTGTAGACCGTTTC +
Preference number: 2 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKTIIKL*LIVDRF
Trigger: GAAACGGTCTACAATCAGTCAAAGTTTGATAATCGT...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 72 bp CCCAGAACACAGCATTTAAAGTGTGCGACGTGCTGCTaGGCTCTGCTGCTGAGCGACACAGAAGAGGCTGGA +
Preference number: 3 (lower is better)
Translates to: PRTQHLKCATCC*ALLLSDTEEAG
Trigger: TCCAGCCTCTTCTGTGTCGCTCAGCAGCAGAGCTCAGCAGCACGTCGCACACTTTAAATGCTGTGTTCTGGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR GCA 72 bp TGTGACCCACAAACCCAGAACACAGCATTTAAAGTGTaGGACGTGCTGCTGAGCTCTGCTGCTGAGCGACAC +
Preference number: 3 (lower is better)
Translates to: CDPQTQNTAFKV*DVLLSSAAERH
Trigger: GTGTCGCTCAGCAGCAGAGCTCAGCAGCACGTCGCACACTTTAAATGCTGTGTTCTGGGTTTGTGGGTCACA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 72 bp AAGCCAAGCACTGACAGTGCTGTCACAGGCTCAGTGTaGCCTCTTAGGGGATTCTGGGATCACAAGATAAGT +
Preference number: 3 (lower is better)
Translates to: KPSTDSAVTGSV*PLRGFWDHKIS
Trigger: ACTTATCTTGTGATCCCAGAATCCCCTAAGAGGTCACACTGAGCCTGTGACAGCACTGTCAGTGCTTGGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 72 bp AACAAAGACAGAGGCCCTGCATCTGGAGAGTGCTTGTaGCATTTCTACACACCTCACAGATGTCGTGAGGCT +
Preference number: 3 (lower is better)
Translates to: NKDRGPASGECL*HFYTPHRCREA
Trigger: AGCCTCACGACATCTGTGAGGTGTGTAGAAATGTCACAAGCACTCTCCAGATGCAGGGCCTCTGTCTTTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CCA 72 bp TTTGTAGTTTTCTGGAGGCAAAAATGCATGGGTCCCTaGCAGTGTTCCTCCATACATGCCCAGTTCTCCCAC +
Preference number: 3 (lower is better)
Translates to: FVVFWRQKCMGP*QCSSIHAQFSH
Trigger: GTGGGAGAACTGGGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAACTACAAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CAA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCAAAAGGACAACCACATaGGTAAGGCACTGGTGTTTG +
Preference number: 3 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHAKRTTT*VRHWCL
Trigger: CAAACACCAGTGCCTTACCAATGTGGTTGTCCTTTT...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CAA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGCACATTATTGCATATTaGACACATGGCATATACCCC +
Preference number: 3 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGHIIAY*THGIYP
Trigger: GGGGTATATGCCATGTGTCAAATATGCAATAATGTG...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 72 bp GTGGGCAGATCACCCACCTCGCCTTTAACATGCATCTaGCCAGCAGCATGGATAAGTGTCATTATTTGTTCC +
Preference number: 3 (lower is better)
Translates to: VGRSPTSPLTCI*PAAWISVIICS
Trigger: GGAACAAATAATGACACTTATCCATGCTGCTGGTCAGATGCATGTTAAAGGCGAGGTGGGTGATCTGCCCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR GCA 72 bp GGGATTCTGGGATCACAAGATAAGTCAAGTAGCTGTTaGAACGTGGAAGGCAGTGGAAAAGCAACAGCAGTG +
Preference number: 3 (lower is better)
Translates to: GILGSQDKSSSC*NVEGSGKATAV
Trigger: CACTGCTGTTGCTTTTCCACTGCCTTCCACGTTGCAACAGCTACTTGACTTATCTTGTGATCCCAGAATCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR GCA 72 bp AACCTAGGGAACTTTGTAGTTTTCTGGAGGCAAAAATaGATGGGTCCCTGGCAGTGTTCCTCCATACATGCC +
Preference number: 3 (lower is better)
Translates to: NLGNFVVFWRQK*MGPWQCSSIHA
Trigger: GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAACTACAAAGTTCCCTAGGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CAA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACGCAAACCAATCCCTGTaGCTTTTACCTAATGCCCGG +
Preference number: 3 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHANQSL*LLPNAR
Trigger: CCGGGCATTAGGTAAAAGCAACAGGGATTGGTTTGC...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CAA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCGAGTCTTCGCTTTTATaGCTGAGACAAATGTGCATG +
Preference number: 3 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHAESSLL*LRQMCM
Trigger: CATGCACATTTGTCTCAGCAATAAAAGCGAAGACTC...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 72 bp TTAAGCTTCAGAGAAACAGCAAGGACAGAAACGACGTaGAAAGCAATGGTGACAACCCAGGCAGGAGAGACT +
Preference number: 3 (lower is better)
Translates to: LSFRETARTETT*KAMVTTQAGET
Trigger: AGTCTCTCCTGCCTGGGTTGTCACCATTGCTTTTCACGTCGTTTCTGTCCTTGCTGTTTCTCTGAAGCTTAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 72 bp CCATGGCATGAGGACTCTGAAACTCACTTACAGATCTaGTGGCACACAGACAGCAGACACAGTAGCATCTTT +
Preference number: 3 (lower is better)
Translates to: PWHEDSETHLQI*WHTDSRHSSIF
Trigger: AAAGATGCTACTGTGTCTGCTGTCTGTGTGCCATCAGATCTGTAAGTGAGTTTCAGAGTCCTCATGCCATGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 72 bp ATCAGTTCCACGATGATTTCACTGACTCCTCTCATCTaGAGACCAGTATGCAAACAGAAAGCAGAAGTCGGG +
Preference number: 3 (lower is better)
Translates to: ISSTMISLTPLI*RPVCKQKAEVG
Trigger: CCCGACTTCTGCTTTCTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAGTGAAATCATCGTGGAACTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CAA 90 bp AAGTGTCATTATTTGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAACTGTCTCGCAAACCAATCCCTGTaGCTTTTACCTAATGCCCGG +
Preference number: 3 (lower is better)
Translates to: KCHYLFLERVRLMLPNCLANQSL*LLPNAR
Trigger: CCGGGCATTAGGTAAAAGCAACAGGGATTGGTTTGC...GAGACAGTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CAA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGGAGTCTTCGCTTTTATaGCTGAGACAAATGTGCATG +
Preference number: 3 (lower is better)
Translates to: FYTPHRCREALERSRYIQESSLL*LRQMCM
Trigger: CATGCACATTTGTCTCAGCAATAAAAGCGAAGACTC...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 72 bp CCAGGAGGGCATCCAGTAAACACATTATTGCATATTTaGCACATGGCATATACCCCACATGTACAATGGAGA +
Preference number: 3 (lower is better)
Translates to: PGGHPVNTLLHI*HMAYTPHVQWR
Trigger: TCTCCATTGTACATGTGGGGTATATGCCATGTGTCAAATATGCAATAATGTGTTTACTGGATGCCCTCCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CCA 72 bp AAAACAAACCCAAACAAACCAACTTTCCCTCTTCAGTaGAAAAGGACAACCACATTGGTAAGGCACTGGTGT +
Preference number: 3 (lower is better)
Translates to: KTNPNKPTFPLQ*KRTTTLVRHWC
Trigger: ACACCAGTGCCTTACCAATGTGGTTGTCCTTTTCCACTGAAGAGGGAAAGTTGGTTTGTTTGGGTTTGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CAA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACGACGATTATCAAACTTaGACTGATTGTAGACCGTTT +
Preference number: 3 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHDDYQT*TDCRPF
Trigger: AAACGGTCTACAATCAGTCAAAGTTTGATAATCGTC...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 72 bp ACTAGAGCAGACGTGGGGAAGACGATTATCAAACTTTaGCTGATTGTAGACCGTTTCATAAAACACAGCATG +
Preference number: 3 (lower is better)
Translates to: TRADVGKTIIKL*LIVDRFIKHSM
Trigger: CATGCTGTGTTTTATGAAACGGTCTACAATCAGTCAAAGTTTGATAATCGTCTTCCCCACGTCTGCTCTAGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 72 bp TTATTGCTGAGACAAATGTGCATGTTCAGATGTTGCTaGAACACCTCGTGTGTGAGAACCACAGAGGTAAAA +
Preference number: 3 (lower is better)
Translates to: LLLRQMCMFRCC*NTSCVRTTEVK
Trigger: TTTTACCTCTGTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CAA 90 bp GCTTATGTTACCCAACTGTCTCTATATTATCACACCCTAAACAAAAACCAGAGCTGTAATGTCCTCTCATaGGACAGGACTACTAAAGGA +
Preference number: 3 (lower is better)
Translates to: AYVTQLSLYYHTLNKNQSCNVLS*DRTTKG
Trigger: TCCTTTAGTAGTCCTGTCCAATGAGAGGACATTACA...GCTCTGGTTTTTGTTTAGGGTGTGATAATATAGAGACAGTTGGGTAACATAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR-3UTR CAA 90 bp GTCTTCGCTTTTATTGCTGAGACAAATGTGCATGTTCAGATGTTGCTGAAACACGATAAGTGTCATTATTaGTTCCTAGAAAGGGTGAGG +
Preference number: 3 (lower is better)
Translates to: VFAFIAETNVHVQMLLKHDKCHY*FLERVR
Trigger: CCTCACCCTTTCTAGGAACAAATAATGACACTTATC...GTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAAAAGCGAAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR TCA 72 bp TTGCTGTATATAAAACTAACATGTGCACATTGTGCTTaGACTGCAAAGGCTGTACAGCTTTACAGAGGACCA +
Preference number: 3 (lower is better)
Translates to: LLYIKLTCAHCA*TAKAVQLYRGP
Trigger: TGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCACAATGTGCACATGTTAGTTTTATATACAGCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR GCA 72 bp TTTCAGAAGACTAACTTTAAGGGTCTCTTCTTACAGTaGTGTGACCCACAAACCCAGAACACAGCATTTAAA +
Preference number: 3 (lower is better)
Translates to: FQKTNFKGLFLQ*CDPQTQNTAFK
Trigger: TTTAAATGCTGTGTTCTGGGTTTGTGGGTCACAGCACTGTAAGAAGAGACCCTTAAAGTTAGTCTTCTGAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CCA 72 bp GAACACGACACTTCTCTTTTAAGGAGGAGGTACCAATaGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTT +
Preference number: 3 (lower is better)
Translates to: EHDTSLLRRRYQ*SISKHQVCHKF
Trigger: AAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCTTAAAAGAGAAGTGTCGTGTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CCA 72 bp ACAGCAGACACAGTAGCATCTTTTCTGTTTCAATGCTaGAATCGTTCAAAATTAAGCTTCAGAGAAACAGCA +
Preference number: 3 (lower is better)
Translates to: TADTVASFLFQC*NRSKLSFRETA
Trigger: TGCTGTTTCTCTGAAGCTTAATTTTGAACGATTCCAGCATTGAAACAGAAAAGATGCTACTGTGTCTGCTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CCA 72 bp GGCTGTTTTACTACTGAAATGGTGACAGATTCAACATaGAAGCTAACTCAGAGAAGTGAACCAAACCAATAT +
Preference number: 3 (lower is better)
Translates to: GCFTTEMVTDST*KLTQRSEPNQY
Trigger: ATATTGGTTTGGTTCACTTCTCTGAGTTAGCTTCCATGTTGAATCTGTCACCATTTCAGTAGTAAAACAGCC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCCTGCCACACTGGCCATaGAGCACCCCTTGGGCACAG +
Preference number: 4 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHALPHWP*STPWAQ
Trigger: CTGTGCCCAAGGGGTGCTTCATGGCCAGTGTGGCAG...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 72 bp CTGCATGGAGGCCTACATGATGAGAGGGCAGAGGTCTaGGTTCAGTGCACTGACAGAGCGCTCTCCTCGATA +
Preference number: 4 (lower is better)
Translates to: LHGGLHDERAEV*VQCTDRALSSI
Trigger: TATCGAGGAGAGCGCTCTGTCAGTGCACTGAACCAAGACCTCTGCCCTCTCATCATGTAGGCCTCCATGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGGGTAACTGTACTCCATaGAGTTCTGGGCCCAATGCC +
Preference number: 4 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGGNCTP*SSGPNA
Trigger: GGCATTGGGCCCAGAACTTCATGGAGTACAGTTACC...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGGAGCAATGCCAAGCATaGAGTGGCGGAGGTCATAGA +
Preference number: 4 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGEQCQA*SGGGHR
Trigger: TCTATGACCTCCGCCACTTCATGCTTGGCATTGCTC...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGCCGGGTCACCATAATTaGCCAGCCACCTTTCTCATC +
Preference number: 4 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGPGHHN*PATFLI
Trigger: GATGAGAAAGGTGGCTGGCCAATTATGGTGACCCGG...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp AACACAGCATTTAAAGTGTGCGACGTGCTGCTGAGCTCTGCTGCTGAGCGACACGGCGGAGGTCATAGATaGTCCCGGAGCCAGTATCAT +
Preference number: 4 (lower is better)
Translates to: NTAFKVCDVLLSSAAERHGGGHR*SRSQYH
Trigger: ATGATACTGGCTCCGGGACCATCTATGACCTCCGCC...GTGTCGCTCAGCAGCAGAGCTCAGCAGCACGTCGCACACTTTAAATGCTGTGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp AACACAGCATTTAAAGTGTGCGACGTGCTGCTGAGCTCTGCTGCTGAGCGACACCTTGCCCTTGTGCCATaGCAGAGTACCATCCTGGTT +
Preference number: 4 (lower is better)
Translates to: NTAFKVCDVLLSSAAERHLALVP*QSTILV
Trigger: AACCAGGATGGTACTCTGCCATGGCACAAGGGCAAG...GTGTCGCTCAGCAGCAGAGCTCAGCAGCACGTCGCACACTTTAAATGCTGTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp AACACAGCATTTAAAGTGTGCGACGTGCTGCTGAGCTCTGCTGCTGAGCGACACACTTGCAGCAAAGAATaGAGCCATGTGGGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: NTAFKVCDVLLSSAAERHTCSKE*SHVGCG
Trigger: ACCACAGCCCACATGGCTGCATTCTTTGCTGCAAGT...GTGTCGCTCAGCAGCAGAGCTCAGCAGCACGTCGCACACTTTAAATGCTGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp ACTGACTCCTCTCATCTGAAGACCAGTATGCAAACAGAAAGCAGAAGTCGGGGCGGCGGAGGTCATAGATaGTCCCGGAGCCAGTATCAT +
Preference number: 4 (lower is better)
Translates to: TDSSHLKTSMQTESRSRGGGGHR*SRSQYH
Trigger: ATGATACTGGCTCCGGGACCATCTATGACCTCCGCC...GCCCCGACTTCTGCTTTCTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGTCAAAGTCTTATAGTTaGCCCGAGCTGCCAAACAAC +
Preference number: 4 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGSKSYS*PELPNN
Trigger: GTTGTTTGGCAGCTCGGGTCAACTATAAGACTTTGA...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGCCCTTAAAGCTGAACTaGGGAATACATAGTCTTTCG +
Preference number: 4 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGPLKLN*GIHSLS
Trigger: CGAAAGACTATGTATTCCTCAGTTCAGCTTTAAGGG...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGCCCAACAACAGGGGGTaGCTTCTGTTGTTCCTGAGG +
Preference number: 4 (lower is better)
Translates to: FYTPHRCREALERSRYIQPNNRG*LLLFLR
Trigger: CCTCAGGAACAACAGAAGGCACCCCCTGTTGTTGGG...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGGAATCCCTTCCCTTTTaGAATCAACCTAACCACCTT +
Preference number: 4 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGESLPF*NQPNHL
Trigger: AAGGTGGTTAGGTTGATTGCAAAAGGGAAGGGATTC...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACGATGGCTTGCCCTTGTaGCATGGCAGAGTACCATCC +
Preference number: 4 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHDGLPL*HGRVPS
Trigger: GGATGGTACTCTGCCATGGCACAAGGGCAAGCCATC...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCACGGCTTTAACTCCATaGTGCTCTGACGGAAACTTG +
Preference number: 4 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHATALTP*CSDGNL
Trigger: CAAGTTTCCGTCAGAGCAGCATGGAGTTAAAGCCGT...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCTCAAAGTCTTATAGTTaGCCCGAGCTGCCAAACAAC +
Preference number: 4 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHASKSYS*PELPNN
Trigger: GTTGTTTGGCAGCTCGGGTCAACTATAAGACTTTGA...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp CATGGCATGAGGACTCTGAAACTCACTTACAGATCTGATGGCACACAGACAGCAGGATCTAGACTTGTCTaGCACACTGGCCATGAAGCA +
Preference number: 4 (lower is better)
Translates to: HGMRTLKLTYRSDGTQTAGSRLV*HTGHEA
Trigger: TGCTTCATGGCCAGTGTGGCAGACAAGTCTAGATCC...TGCTGTCTGTGTGCCATCAGATCTGTAAGTGAGTTTCAGAGTCCTCATGCCATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp ACTGACTCCTCTCATCTGAAGACCAGTATGCAAACAGAAAGCAGAAGTCGGGGCACGGCTTTAACTCCATaGTGCTCTGACGGAAACTTG +
Preference number: 4 (lower is better)
Translates to: TDSSHLKTSMQTESRSRGTALTP*CSDGNL
Trigger: CAAGTTTCCGTCAGAGCAGCATGGAGTTAAAGCCGT...GCCCCGACTTCTGCTTTCTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACATGGTGCTGAGCAGCTaGAGCTGGTTAATGTGGGTG +
Preference number: 4 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHMVLSS*SWLMWV
Trigger: CACCCACATTAACCAGCTGCAGCTGCTCAGCACCAT...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGGGATTGCTTTGTCGCTaGAACACTTATTCCACAAAA +
Preference number: 4 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGGLLCR*NTYSTK
Trigger: TTTTGTGGAATAAGTGTTCCAGCGACAAAGCAATCC...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGCTTGCCCTTGTGCCATaGCAGAGTACCATCCTGGTT +
Preference number: 4 (lower is better)
Translates to: FYTPHRCREALERSRYIQLALVP*QSTILV
Trigger: AACCAGGATGGTACTCTGCCATGGCACAAGGGCAAG...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGAAATTCTTTGAAGATTaGGGACTCATCGATGGTGCT +
Preference number: 4 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGKFFED*GLIDGA
Trigger: AGCACCATCGATGAGTCCCCAATCTTCAAAGAATTT...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAACTGCCACACTGGCCATaGAGCACCCCTTGGGCACAG +
Preference number: 4 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKLPHWP*STPWAQ
Trigger: CTGTGCCCAAGGGGTGCTTCATGGCCAGTGTGGCAG...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp CGATACCTTTCTAAGCACCTGCCCCGTGGAATGCAACTGTTTCAGAAGACTAACAAGTTCTGGGCCCAATaGCGTAGTATATGTCCCTGT +
Preference number: 4 (lower is better)
Translates to: RYLSKHLPRGMQLFQKTNKFWAQ*RSICPC
Trigger: ACAGGGACATATACTACGGCATTGGGCCCAGAACTT...GTTAGTCTTCTGAAACAGTTGCATTCCACGGGGCAGGTGCTTAGAAAGGTATCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCGTTTGGCTATGTGGTTaGCATAGTGGTTACTTTCAG +
Preference number: 4 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHAVWLCG*HSGYFQ
Trigger: CTGAAAGTAACCACTATGCCAACCACATAGCCAAAC...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp ACTGACTCCTCTCATCTGAAGACCAGTATGCAAACAGAAAGCAGAAGTCGGGGCCTTCTGACTGCTGTTTaGCTATGTGGTTGGCATAGT +
Preference number: 4 (lower is better)
Translates to: TDSSHLKTSMQTESRSRGLLTAV*LCGWHS
Trigger: ACTATGCCAACCACATAGCCAAACAGCAGTCAGAAG...GCCCCGACTTCTGCTTTCTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGTGCACAGTGAAGAGCTaGTTCTTTTCTGTGGTCTCC +
Preference number: 4 (lower is better)
Translates to: FYTPHRCREALERSRYIQCTVKS*FFSVVS
Trigger: GGAGACCACAGAAAAGAATCAGCTCTTCACTGTGCA...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCTCTCGGTTAGATTCTTaGTGTAATGACTTAGCCCAT +
Preference number: 4 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHASRLDS*CNDLAH
Trigger: ATGGGCTAAGTCATTACAGCAAGAATCTAACCGAGA...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACAAGTGCCGAGGAAACTaGATTGCTTTGTCGCTGGAA +
Preference number: 4 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHKCRGN*IALSLE
Trigger: TTCCAGCGACAAAGCAATCCAGTTTCCTCGGCACTT...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp CATGGCATGAGGACTCTGAAACTCACTTACAGATCTGATGGCACACAGACAGCACTGTGCAATCTGGATTaGGTAGAAATAGCCTTGAGG +
Preference number: 4 (lower is better)
Translates to: HGMRTLKLTYRSDGTQTALCNLD*VEIALR
Trigger: CCTCAAGGCTATTTCTACCCAATCCAGATTGCACAG...TGCTGTCTGTGTGCCATCAGATCTGTAAGTGAGTTTCAGAGTCCTCATGCCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp CATGGCATGAGGACTCTGAAACTCACTTACAGATCTGATGGCACACAGACAGCATACTCCATGAAGTTCTaGGCCCAATGCCGTAGTATA +
Preference number: 4 (lower is better)
Translates to: HGMRTLKLTYRSDGTQTAYSMKF*AQCRSI
Trigger: TATACTACGGCATTGGGCCCAGAACTTCATGGAGTA...TGCTGTCTGTGTGCCATCAGATCTGTAAGTGAGTTTCAGAGTCCTCATGCCATG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAATTCCCCCGTTGCTATTaGAGCCCCCAACAACAGGGG +
Preference number: 4 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKFPRCY*SPQQQG
Trigger: CCCCTGTTGTTGGGGGCTTCAATAGCAACGGGGGAA...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACGTCAGGGTGATAAGGTaGTCTCTGTGCATAGACTTT +
Preference number: 4 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHVRVIR*SLCIDF
Trigger: AAAGTCTATGCACAGAGATCACCTTATCACCCTGAC...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACCTCCACTTATACATTTaGCTCTGTCTCGGACTTCCA +
Preference number: 4 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHLHLYI*LCLGLP
Trigger: TGGAAGTCCGAGACAGAGTCAAATGTATAAGTGGAG...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGCTTCTGACTGCTGTTTaGCTATGTGGTTGGCATAGT +
Preference number: 4 (lower is better)
Translates to: FYTPHRCREALERSRYIQLLTAV*LCGWHS
Trigger: ACTATGCCAACCACATAGCCAAACAGCAGTCAGAAG...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGCTGTGCAATCTGGATTaGGTAGAAATAGCCTTGAGG +
Preference number: 4 (lower is better)
Translates to: FYTPHRCREALERSRYIQLCNLD*VEIALR
Trigger: CCTCAAGGCTATTTCTACCCAATCCAGATTGCACAG...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp AAGTGTCATTATTTGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAACTGTCTCCCGGGTCACCATAATTaGCCAGCCACCTTTCTCATC +
Preference number: 4 (lower is better)
Translates to: KCHYLFLERVRLMLPNCLPGHHN*PATFLI
Trigger: GATGAGAAAGGTGGCTGGCCAATTATGGTGACCCGG...GAGACAGTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGAGGAAATGCCTCTTCTaGCTGCTGTTTGGCTATGTG +
Preference number: 4 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRRKCLF*LLFGYV
Trigger: CACATAGCCAAACAGCAGTCAGAAGAGGCATTTCCT...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp CATGGCATGAGGACTCTGAAACTCACTTACAGATCTGATGGCACACAGACAGCAAGACATAATGCACAGTaGAGAGCTGATTCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: HGMRTLKLTYRSDGTQTARHNAQ*RADSFL
Trigger: CAGAAAAGAATCAGCTCTTCACTGTGCATTATGTCT...TGCTGTCTGTGTGCCATCAGATCTGTAAGTGAGTTTCAGAGTCCTCATGCCATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GTCTTCGCTTTTATTGCTGAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCATGTGGGCTGTGGTTaGGATGGTAATGTTGTCCAG +
Preference number: 4 (lower is better)
Translates to: VFAFIAETNVHVQMLLKHHVGCG*DGNVVQ
Trigger: CTGGACAACATTACCATCTCAACCACAGCCCACATG...GTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAAAAGCGAAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp AAGTGTCATTATTTGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAACTGTCTCCATGTGGGCTGTGGTTaGGATGGTAATGTTGTCCAG +
Preference number: 4 (lower is better)
Translates to: KCHYLFLERVRLMLPNCLHVGCG*DGNVVQ
Trigger: CTGGACAACATTACCATCTCAACCACAGCCCACATG...GAGACAGTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACCCCTTAAAGCTGAACTaGGGAATACATAGTCTTTCG +
Preference number: 4 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHPLKLN*GIHSLS
Trigger: CGAAAGACTATGTATTCCTCAGTTCAGCTTTAAGGG...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGCCGAGGAAACTGGATTaGTTTGTCGCTGGAACACTT +
Preference number: 4 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRPRKLD*FVAGTL
Trigger: AAGTGTTCCAGCGACAAAGCAATCCAGTTTCCTCGG...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGCTCCCTTTAATGGTGTaGTCATCGTTTATGAGACAG +
Preference number: 4 (lower is better)
Translates to: FYTPHRCREALERSRYIQLPLMV*SSFMRQ
Trigger: CTGTCTCATAAACGATGAGCACACCATTAAAGGGAG...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGAAGTTCTGGGCCCAATaGCGTAGTATATGTCCCTGT +
Preference number: 4 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRKFWAQ*RSICPC
Trigger: ACAGGGACATATACTACGGCATTGGGCCCAGAACTT...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAAGATGGCTTGCCCTTGTaGCATGGCAGAGTACCATCC +
Preference number: 4 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKDGLPL*HGRVPS
Trigger: GGATGGTACTCTGCCATGGCACAAGGGCAAGCCATC...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCTCTGTGCATAGACTTTaGAATAGCTATGAGAGAATT +
Preference number: 4 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHASVHRL*NSYERI
Trigger: AATTCTCTCATAGCTATTCCAAAGTCTATGCACAGA...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGAAGAATGCAGCCATGTaGGCTGTGGTTGAGATGGTA +
Preference number: 4 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRKNAAM*AVVEMV
Trigger: TACCATCTCAACCACAGCCCACATGGCTGCATTCTT...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 72 bp GCTTTTATTGCTGAGACAAATGTGCATGTTCAGATGTaGCTGAAACACCTCGTGTGTGAGAACCACAGAGGT +
Preference number: 4 (lower is better)
Translates to: AFIAETNVHVQM*LKHLVCENHRG
Trigger: ACCTCTGTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 72 bp CCAACTTTCCCTCTTCAGTGGAAAAGGACAACCACATaGGTAAGGCACTGGTGTTTGTCACAAAATCAGTTC +
Preference number: 4 (lower is better)
Translates to: PTFPLQWKRTTT*VRHWCLSQNQF
Trigger: GAACTGATTTTGTGACAAACACCAGTGCCTTACCAATGTGGTTGTCCTTTTCCACTGAAGAGGGAAAGTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACAGACATAATGCACAGTaGAGAGCTGATTCTTTTCTG +
Preference number: 4 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHRHNAQ*RADSFL
Trigger: CAGAAAAGAATCAGCTCTTCACTGTGCATTATGTCT...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp ATAATTGAACAAATGCAACAAATGCTCACTCCCTCTCAAGAAATGAACCTATGGGGTAACTGTACTCCATaGAGTTCTGGGCCCAATGCC +
Preference number: 4 (lower is better)
Translates to: IIEQMQQMLTPSQEMNLWGNCTP*SSGPNA
Trigger: GGCATTGGGCCCAGAACTTCATGGAGTACAGTTACC...CCATAGGTTCATTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTTCAATTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp ATAATTGAACAAATGCAACAAATGCTCACTCCCTCTCAAGAAATGAACCTATGGGAGCAATGCCAAGCATaGAGTGGCGGAGGTCATAGA +
Preference number: 4 (lower is better)
Translates to: IIEQMQQMLTPSQEMNLWEQCQA*SGGGHR
Trigger: TCTATGACCTCCGCCACTTCATGCTTGGCATTGCTC...CCATAGGTTCATTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTTCAATTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAAATGGTGCTGAGCAGCTaGAGCTGGTTAATGTGGGTG +
Preference number: 4 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKMVLSS*SWLMWV
Trigger: CACCCACATTAACCAGCTGCAGCTGCTCAGCACCAT...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACAAATTCTTTGAAGATTaGGGACTCATCGATGGTGCT +
Preference number: 4 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHKFFED*GLIDGA
Trigger: AGCACCATCGATGAGTCCCCAATCTTCAAAGAATTT...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 72 bp ATGCATCTGACCAGCAGCATGGATAAGTGTCATTATTaGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAAC +
Preference number: 4 (lower is better)
Translates to: MHLTSSMDKCHY*FLERVRLMLPN
Trigger: GTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTTATCCATGCTGCTGGTCAGATGCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 72 bp AGCAAGGAAACAATTACAAGAACAAACCAGCAGCTTTaGGTAAGAGTCTGTACACCAACAAAGACAGAGGCC +
Preference number: 4 (lower is better)
Translates to: SKETITRTNQQL*VRVCTPTKTEA
Trigger: GGCCTCTGTCTTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTTTCCTTGCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 72 bp TCCAGGAGGGCATCCAGTAAACACATTATTGCATATTaGACACATGGCATATACCCCACATGTACAATGGAG +
Preference number: 4 (lower is better)
Translates to: SRRASSKHIIAY*THGIYPTCTME
Trigger: CTCCATTGTACATGTGGGGTATATGCCATGTGTCAAATATGCAATAATGTGTTTACTGGATGCCCTCCTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGCAATCTCTTCATATTTaGGCCCTAACACCTTGCTTC +
Preference number: 4 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRQSLHI*ALTPCF
Trigger: GAAGCAAGGTGTTAGGGCTCAAATATGAAGAGATTG...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp GTCTTCGCTTTTATTGCTGAGACAAATGTGCATGTTCAGATGTTGCTGAAACACAATGCCTCTTCTGACTaGTGTTTGGCTATGTGGTTG +
Preference number: 4 (lower is better)
Translates to: VFAFIAETNVHVQMLLKHNASSD*CLAMWL
Trigger: CAACCACATAGCCAAACAGCAGTCAGAAGAGGCATT...GTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAAAAGCGAAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACTCTGTCCCTGTCTTCTaGTGTTTCATATACTTCTAT +
Preference number: 4 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHSVPVF*CFIYFY
Trigger: ATAGAAGTATATGAAACAGCAGAAGACAGGGACAGA...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAAACTTGCAGCAAAGAATaGAGCCATGTGGGCTGTGGT +
Preference number: 4 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKTCSKE*SHVGCG
Trigger: ACCACAGCCCACATGGCTGCATTCTTTGCTGCAAGT...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGGCTTTAACTCCATGCTaGTCTGACGGAAACTTGTAT +
Preference number: 4 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRALTPC*SDGNLY
Trigger: ATACAAGTTTCCGTCAGAGCAGCATGGAGTTAAAGC...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp CGATACCTTTCTAAGCACCTGCCCCGTGGAATGCAACTGTTTCAGAAGACTAACTCTGTGCATAGACTTTaGAATAGCTATGAGAGAATT +
Preference number: 4 (lower is better)
Translates to: RYLSKHLPRGMQLFQKTNSVHRL*NSYERI
Trigger: AATTCTCTCATAGCTATTCCAAAGTCTATGCACAGA...GTTAGTCTTCTGAAACAGTTGCATTCCACGGGGCAGGTGCTTAGAAAGGTATCG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGACCTTCACTGGTTTCTaGAGCAATAAACTGTTTAAC +
Preference number: 4 (lower is better)
Translates to: FYTPHRCREALERSRYIQTFTGF*SNKLFN
Trigger: GTTAAACAGTTTATTGCTCCAGAAACCAGTGAAGGT...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp GCTTATGTTACCCAACTGTCTCTATATTATCACACCCTAAACAAAAACCAGAGCAAGAATGCAGCCATGTaGGCTGTGGTTGAGATGGTA +
Preference number: 4 (lower is better)
Translates to: AYVTQLSLYYHTLNKNQSKNAAM*AVVEMV
Trigger: TACCATCTCAACCACAGCCCACATGGCTGCATTCTT...GCTCTGGTTTTTGTTTAGGGTGTGATAATATAGAGACAGTTGGGTAACATAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp ATAATTGAACAAATGCAACAAATGCTCACTCCCTCTCAAGAAATGAACCTATGGAGGAAATGCCTCTTCTaGCTGCTGTTTGGCTATGTG +
Preference number: 4 (lower is better)
Translates to: IIEQMQQMLTPSQEMNLWRKCLF*LLFGYV
Trigger: CACATAGCCAAACAGCAGTCAGAAGAGGCATTTCCT...CCATAGGTTCATTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTTCAATTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp GCTTATGTTACCCAACTGTCTCTATATTATCACACCCTAAACAAAAACCAGAGCGTCAGGGTGATAAGGTaGTCTCTGTGCATAGACTTT +
Preference number: 4 (lower is better)
Translates to: AYVTQLSLYYHTLNKNQSVRVIR*SLCIDF
Trigger: AAAGTCTATGCACAGAGATCACCTTATCACCCTGAC...GCTCTGGTTTTTGTTTAGGGTGTGATAATATAGAGACAGTTGGGTAACATAAGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAATGCACAGTGAAGAGCTaGTTCTTTTCTGTGGTCTCC +
Preference number: 4 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKCTVKS*FFSVVS
Trigger: GGAGACCACAGAAAAGAATCAGCTCTTCACTGTGCA...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp ATAATTGAACAAATGCAACAAATGCTCACTCCCTCTCAAGAAATGAACCTATGGCCGAGGAAACTGGATTaGTTTGTCGCTGGAACACTT +
Preference number: 4 (lower is better)
Translates to: IIEQMQQMLTPSQEMNLWPRKLD*FVAGTL
Trigger: AAGTGTTCCAGCGACAAAGCAATCCAGTTTCCTCGG...CCATAGGTTCATTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTTCAATTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp GTCTTCGCTTTTATTGCTGAGACAAATGTGCATGTTCAGATGTTGCTGAAACACGAATCCCTTCCCTTTTaGAATCAACCTAACCACCTT +
Preference number: 4 (lower is better)
Translates to: VFAFIAETNVHVQMLLKHESLPF*NQPNHL
Trigger: AAGGTGGTTAGGTTGATTGCAAAAGGGAAGGGATTC...GTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAAAAGCGAAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp ATAATTGAACAAATGCAACAAATGCTCACTCCCTCTCAAGAAATGAACCTATGGAAGTGCCGAGGAAACTaGATTGCTTTGTCGCTGGAA +
Preference number: 4 (lower is better)
Translates to: IIEQMQQMLTPSQEMNLWKCRGN*IALSLE
Trigger: TTCCAGCGACAAAGCAATCCAGTTTCCTCGGCACTT...CCATAGGTTCATTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTTCAATTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp GTCTTCGCTTTTATTGCTGAGACAAATGTGCATGTTCAGATGTTGCTGAAACACAGAGCTAGGTGTGGTTaGATATTCTTCATACCAGTC +
Preference number: 4 (lower is better)
Translates to: VFAFIAETNVHVQMLLKHRARCG*IFFIPV
Trigger: GACTGGTATGAAGAATATCCAACCACACCTAGCTCT...GTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAAAAGCGAAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGATTTCTCTACCCAAGTaGATGGAAGGAAAACTTCAT +
Preference number: 4 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRISLPK*MEGKLH
Trigger: ATGAAGTTTTCCTTCCATTCACTTGGGTAGAGAAAT...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR TCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAACTCCACTTATACATTTaGCTCTGTCTCGGACTTCCA +
Preference number: 4 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKLHLYI*LCLGLP
Trigger: TGGAAGTCCGAGACAGAGTCAAATGTATAAGTGGAG...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAAAATGCCTCTTCTGACTaGTGTTTGGCTATGTGGTTG +
Preference number: 4 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKNASSD*CLAMWL
Trigger: CAACCACATAGCCAAACAGCAGTCAGAAGAGGCATT...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp GTCTTCGCTTTTATTGCTGAGACAAATGTGCATGTTCAGATGTTGCTGAAACACGGATTGCTTTGTCGCTaGAACACTTATTCCACAAAA +
Preference number: 4 (lower is better)
Translates to: VFAFIAETNVHVQMLLKHGLLCR*NTYSTK
Trigger: TTTTGTGGAATAAGTGTTCCAGCGACAAAGCAATCC...GTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAAAAGCGAAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGACCTTCACTGGTTTCTaGAGCAATAAACTGTTTAAC +
Preference number: 4 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRTFTGF*SNKLFN
Trigger: GTTAAACAGTTTATTGCTCCAGAAACCAGTGAAGGT...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CCA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAATACTCCATGAAGTTCTaGGCCCAATGCCGTAGTATA +
Preference number: 4 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKYSMKF*AQCRSI
Trigger: TATACTACGGCATTGGGCCCAGAACTTCATGGAGTA...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 72 bp TTTGCTGTATATAAAACTAACATGTGCACATTGTGCTaGAACTGCAAAGGCTGTACAGCTTTACAGAGGACC +
Preference number: 4 (lower is better)
Translates to: FAVYKTNMCTLC*NCKGCTALQRT
Trigger: GGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCACAATGTGCACATGTTAGTTTTATATACAGCAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp ATAATTGAACAAATGCAACAAATGCTCACTCCCTCTCAAGAAATGAACCTATGGCTCCCTTTAATGGTGTaGTCATCGTTTATGAGACAG +
Preference number: 4 (lower is better)
Translates to: IIEQMQQMLTPSQEMNLWLPLMV*SSFMRQ
Trigger: CTGTCTCATAAACGATGAGCACACCATTAAAGGGAG...CCATAGGTTCATTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTTCAATTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp AAGTGTCATTATTTGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAACTGTCTCTCTGTCCCTGTCTTCTaGTGTTTCATATACTTCTAT +
Preference number: 4 (lower is better)
Translates to: KCHYLFLERVRLMLPNCLSVPVF*CFIYFY
Trigger: ATAGAAGTATATGAAACAGCAGAAGACAGGGACAGA...GAGACAGTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp ATAATTGAACAAATGCAACAAATGCTCACTCCCTCTCAAGAAATGAACCTATGGGCTTTAACTCCATGCTaGTCTGACGGAAACTTGTAT +
Preference number: 4 (lower is better)
Translates to: IIEQMQQMLTPSQEMNLWALTPC*SDGNLY
Trigger: ATACAAGTTTCCGTCAGAGCAGCATGGAGTTAAAGC...CCATAGGTTCATTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTTCAATTAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
3UTR CAA 72 bp AGACCGTTTCATAAAACACAGCATGTCTGTGACTTCTaGTGCAGTCAACAAGTTTCATTTCAGTTGTGCTTA +
Preference number: 4 (lower is better)
Translates to: RPFHKTQHVCDF*CSQQVSFQLCL
Trigger: TAAGCACAACTGAAATGAAACTTGTTGACTGCACAAGAAGTCACAGACATGCTGTGTTTTATGAAACGGTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR GCA 90 bp ATAATTGAACAAATGCAACAAATGCTCACTCCCTCTCAAGAAATGAACCTATGGTCTCGGTTAGATTCTTaGTGTAATGACTTAGCCCAT +
Preference number: 4 (lower is better)
Translates to: IIEQMQQMLTPSQEMNLWSRLDS*CNDLAH
Trigger: ATGGGCTAAGTCATTACAGCAAGAATCTAACCGAGA...CCATAGGTTCATTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTTCAATTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS TCA 90 bp TGGTGTGATAGTCCCAGCGGGCCAGGTTGGGAGCAATGCCAAGCATaGAGTGGCGGAGGTCATAGATGGTCCCGGAGCCAGTATCATACA +
Preference number: 5 (lower is better)
Translates to: WCDSPSGPGWEQCQA*SGGGHRWSRSQYHT
Trigger: TGTATGATACTGGCTCCGGGACCATCTATGACCTCCGCCACTTCATGCTTGGCATTGCTCCCAACCTGGCCCGCTGGGACTATCACACCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGTCCCAGCGGGCCAGGTaGGGAGCAATGCCAAGCATG +
Preference number: 5 (lower is better)
Translates to: FYTPHRCREALERSRYIQSQRAR*GAMPSM
Trigger: CATGCTTGGCATTGCTCCCAACCTGGCCCGCTGGGA...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp CATGGCATGAGGACTCTGAAACTCACTTACAGATCTGATGGCACACAGACAGCACTTCCCCCGTTGCTATaGAAGCCCCCAACAACAGGG +
Preference number: 5 (lower is better)
Translates to: HGMRTLKLTYRSDGTQTALPPLL*KPPTTG
Trigger: CCCTGTTGTTGGGGGCTTCAATAGCAACGGGGGAAG...TGCTGTCTGTGTGCCATCAGATCTGTAAGTGAGTTTCAGAGTCCTCATGCCATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AACACAGCATTTAAAGTGTGCGACGTGCTGCTGAGCTCTGCTGCTGAGCGACACTCACTAGCCAGTCACTaGCAGCAAAGAATGCAGCCA +
Preference number: 5 (lower is better)
Translates to: NTAFKVCDVLLSSAAERHSLASH*QQRMQP
Trigger: TGGCTGCATTCTTTGCTGCAAGTGACTGGCTAGTGA...GTGTCGCTCAGCAGCAGAGCTCAGCAGCACGTCGCACACTTTAAATGCTGTGTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CCA 90 bp TGGTTCCTCACTAGCCAGTCACTTGCAGCAAAGAATGCAGCCATGTaGGCTGTGGTTGAGATGGTAATGTTGTCCAGGAATCCCTTCCCT +
Preference number: 5 (lower is better)
Translates to: WFLTSQSLAAKNAAM*AVVEMVMLSRNPFP
Trigger: AGGGAAGGGATTCCTGGACAACATTACCATCTCAACCACAGCCCACATGGCTGCATTCTTTGCTGCAAGTGACTGGCTAGTGAGGAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp GTGCTTGAACTGCAAAGGCTGTACAGCTTTACAGAGGACCACCCTCCAGGAGGGGGAAACTGGATTGCTTaGTCGCTGGAACACTTATTC +
Preference number: 5 (lower is better)
Translates to: VLELQRLYSFTEDHPPGGGNWIA*SLEHLF
Trigger: GAATAAGTGTTCCAGCGACAAAGCAATCCAGTTTCC...CCCTCCTGGAGGGTGGTCCTCTGTAAAGCTGTACAGCCTTTGCAGTTCAAGCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp CGATACCTTTCTAAGCACCTGCCCCGTGGAATGCAACTGTTTCAGAAGACTAACAGGGGGTGCCTTCTGTaGTTCCTGAGGAAATGCCTC +
Preference number: 5 (lower is better)
Translates to: RYLSKHLPRGMQLFQKTNRGCLL*FLRKCL
Trigger: GAGGCATTTCCTCAGGAACAACAGAAGGCACCCCCT...GTTAGTCTTCTGAAACAGTTGCATTCCACGGGGCAGGTGCTTAGAAAGGTATCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp CGATACCTTTCTAAGCACCTGCCCCGTGGAATGCAACTGTTTCAGAAGACTAACACCTTGCTTCCCCCGTaGCTATTGAAGCCCCCAACA +
Preference number: 5 (lower is better)
Translates to: RYLSKHLPRGMQLFQKTNTLLPP*LLKPPT
Trigger: TGTTGGGGGCTTCAATAGCAACGGGGGAAGCAAGGT...GTTAGTCTTCTGAAACAGTTGCATTCCACGGGGCAGGTGCTTAGAAAGGTATCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp ACTGACTCCTCTCATCTGAAGACCAGTATGCAAACAGAAAGCAGAAGTCGGGGCTTGAGCCCTAACACCTaGCTTCCCCCGTTGCTATTG +
Preference number: 5 (lower is better)
Translates to: TDSSHLKTSMQTESRSRGLSPNT*LPPLLL
Trigger: CAATAGCAACGGGGGAAGCAAGGTGTTAGGGCTCAA...GCCCCGACTTCTGCTTTCTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAGT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp CGATACCTTTCTAAGCACCTGCCCCGTGGAATGCAACTGTTTCAGAAGACTAACTGGGTAGAAATAGCCTaGAGGCCCCCACTGGGTAGA +
Preference number: 5 (lower is better)
Translates to: RYLSKHLPRGMQLFQKTNWVEIA*RPPLGR
Trigger: TCTACCCAGTGGGGGCCTCAAGGCTATTTCTACCCA...GTTAGTCTTCTGAAACAGTTGCATTCCACGGGGCAGGTGCTTAGAAAGGTATCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp GTTTTCTGGAGGCAAAAATGCATGGGTCCCTGGCAGTGTTCCTCCATACATGCCTCACTAGCCAGTCACTaGCAGCAAAGAATGCAGCCA +
Preference number: 5 (lower is better)
Translates to: VFWRQKCMGPWQCSSIHASLASH*QQRMQP
Trigger: TGGCTGCATTCTTTGCTGCAAGTGACTGGCTAGTGA...GGCATGTATGGAGGAACACTGCCAGGGACCCATGCATTTTTGCCTCCAGAAAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp CATGGCATGAGGACTCTGAAACTCACTTACAGATCTGATGGCACACAGACAGCAAGAGATGGCTTGCCCTaGTGCCATGGCAGAGTACCA +
Preference number: 5 (lower is better)
Translates to: HGMRTLKLTYRSDGTQTARDGLP*CHGRVP
Trigger: TGGTACTCTGCCATGGCACAAGGGCAAGCCATCTCT...TGCTGTCTGTGTGCCATCAGATCTGTAAGTGAGTTTCAGAGTCCTCATGCCATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGTCCCAGCGGGCCAGGTaGGGAGCAATGCCAAGCATG +
Preference number: 5 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRSQRAR*GAMPSM
Trigger: CATGCTTGGCATTGCTCCCAACCTGGCCCGCTGGGA...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS TCA 90 bp TCCTTTCCTGAGGTCAGTGACCAGGTCTCTGGTAACTGTACTCCATaGAGTTCTGGGCCCAATGCCGTAGTATATGTCCCTGTCTCTGAA +
Preference number: 5 (lower is better)
Translates to: SFPEVSDQVSGNCTP*SSGPNAVVYVPVSE
Trigger: TTCAGAGACAGGGACATATACTACGGCATTGGGCCCAGAACTTCATGGAGTACAGTTACCAGAGACCTGGTCACTGACCTCAGGAAAGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AACACAGCATTTAAAGTGTGCGACGTGCTGCTGAGCTCTGCTGCTGAGCGACACACTGTGCAATCTGGATaGGGTAGAAATAGCCTTGAG +
Preference number: 5 (lower is better)
Translates to: NTAFKVCDVLLSSAAERHTVQSG*GRNSLE
Trigger: CTCAAGGCTATTTCTACCCAATCCAGATTGCACAGT...GTGTCGCTCAGCAGCAGAGCTCAGCAGCACGTCGCACACTTTAAATGCTGTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGGCCATGAAGCACCCCTaGGGCACAGTCCATTCATTA +
Preference number: 5 (lower is better)
Translates to: FYTPHRCREALERSRYIQAMKHP*GTVHSL
Trigger: TAATGAATGGACTGTGCCCAAGGGGTGCTTCATGGC...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS TCA 90 bp AACAACAGGGGGTGCCTTCTGTTGTTCCTGAGGAAATGCCTCTTCTaGCTGCTGTTTGGCTATGTGGTTGGCATAGTGGTTACTTTCAGA +
Preference number: 5 (lower is better)
Translates to: NNRGCLLLFLRKCLF*LLFGYVVGIVVTFR
Trigger: TCTGAAAGTAACCACTATGCCAACCACATAGCCAAACAGCAGTCAGAAGAGGCATTTCCTCAGGAACAACAGAAGGCACCCCCTGTTGTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp ACTGACTCCTCTCATCTGAAGACCAGTATGCAAACAGAAAGCAGAAGTCGGGGCACTCCACTTATACATTaGACTCTGTCTCGGACTTCC +
Preference number: 5 (lower is better)
Translates to: TDSSHLKTSMQTESRSRGTPLIH*TLSRTS
Trigger: GGAAGTCCGAGACAGAGTCAAATGTATAAGTGGAGT...GCCCCGACTTCTGCTTTCTGTTTGCATACTGGTCTTCAGATGAGAGGAGTCAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CCA 90 bp GCCTTTAAGGTAGCTTTTCCACCTCTTGACAAATTCTTTGAAGATTaGGGACTCATCGATGGTGCTGAGCAGCTGCAGCTGGTTAATGTG +
Preference number: 5 (lower is better)
Translates to: AFKVAFPPLDKFFED*GLIDGAEQLQLVNV
Trigger: CACATTAACCAGCTGCAGCTGCTCAGCACCATCGATGAGTCCCCAATCTTCAAAGAATTTGTCAAGAGGTGGAAAAGCTACCTTAAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp GTCTTCGCTTTTATTGCTGAGACAAATGTGCATGTTCAGATGTTGCTGAAACACACCTTGCTTCCCCCGTaGCTATTGAAGCCCCCAACA +
Preference number: 5 (lower is better)
Translates to: VFAFIAETNVHVQMLLKHTLLPP*LLKPPT
Trigger: TGTTGGGGGCTTCAATAGCAACGGGGGAAGCAAGGT...GTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAAAAGCGAAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp CATGGCATGAGGACTCTGAAACTCACTTACAGATCTGATGGCACACAGACAGCAAACCTAACCACCTTTTaGGGCATGATTTTGGTTGGC +
Preference number: 5 (lower is better)
Translates to: HGMRTLKLTYRSDGTQTANLTTF*GMILVG
Trigger: GCCAACCAAAATCATGCCCAAAAAGGTGGTTAGGTT...TGCTGTCTGTGTGCCATCAGATCTGTAAGTGAGTTTCAGAGTCCTCATGCCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp GAGACAAATGTGCATGTTCAGATGTTGCTGAAACACCTCGTGTGTGAGAACCACGTTGAGATGGTAATGTaGTCCAGGAATCCCTTCCCT +
Preference number: 5 (lower is better)
Translates to: ETNVHVQMLLKHLVCENHVEMVM*SRNPFP
Trigger: AGGGAAGGGATTCCTGGACAACATTACCATCTCAAC...GTGGTTCTCACACACGAGGTGTTTCAGCAACATCTGAACATGCACATTTGTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 90 bp TCCATCCACTCTGAATCCACTACTCAAGTGCCGAGGAAACTGGATTaGTTTGTCGCTGGAACACTTATTCCACAAAAGTACTGTGACCAA +
Preference number: 5 (lower is better)
Translates to: SIHSESTTQVPRKLD*FVAGTLIPQKYCDQ
Trigger: TTGGTCACAGTACTTTTGTGGAATAAGTGTTCCAGCGACAAAGCAATCCAGTTTCCTCGGCACTTGAGTAGTGGATTCAGAGTGGATGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAACTTCCCCCGTTGCTATaGAAGCCCCCAACAACAGGG +
Preference number: 5 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKLPPLL*KPPTTG
Trigger: CCCTGTTGTTGGGGGCTTCAATAGCAACGGGGGAAG...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGAACCTAACCACCTTTTaGGGCATGATTTTGGTTGGC +
Preference number: 5 (lower is better)
Translates to: FYTPHRCREALERSRYIQNLTTF*GMILVG
Trigger: GCCAACCAAAATCATGCCCAAAAAGGTGGTTAGGTT...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 90 bp TCATACCAGTCATGTTTATTCATGAACACGGCTTTAACTCCATGCTaGTCTGACGGAAACTTGTATGGGGCTGTTGCCCTTAAAGCTGAA +
Preference number: 5 (lower is better)
Translates to: SYQSCLFMNTALTPC*SDGNLYGAVALKAE
Trigger: TTCAGCTTTAAGGGCAACAGCCCCATACAAGTTTCCGTCAGAGCAGCATGGAGTTAAAGCCGTGTTCATGAATAAACATGACTGGTATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 90 bp TCTTCATACCAGTCATGTTTATTCATGAACACGGCTTTAACTCCATaGTGCTCTGACGGAAACTTGTATGGGGCTGTTGCCCTTAAAGCT +
Preference number: 5 (lower is better)
Translates to: SSYQSCLFMNTALTP*CSDGNLYGAVALKA
Trigger: AGCTTTAAGGGCAACAGCCCCATACAAGTTTCCGTCAGAGCAGCATGGAGTTAAAGCCGTGTTCATGAATAAACATGACTGGTATGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CCA 90 bp TCTAATCCATCCACTCTGAATCCACTACTCAAGTGCCGAGGAAACTaGATTGCTTTGTCGCTGGAACACTTATTCCACAAAAGTACTGTG +
Preference number: 5 (lower is better)
Translates to: SNPSTLNPLLKCRGN*IALSLEHLFHKSTV
Trigger: CACAGTACTTTTGTGGAATAAGTGTTCCAGCGACAAAGCAATCCAGTTTCCTCGGCACTTGAGTAGTGGATTCAGAGTGGATGGATTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp GCTTATGTTACCCAACTGTCTCTATATTATCACACCCTAAACAAAAACCAGAGCGCCGAGGAAACTGGATaGCTTTGTCGCTGGAACACT +
Preference number: 5 (lower is better)
Translates to: AYVTQLSLYYHTLNKNQSAEETG*LCRWNT
Trigger: AGTGTTCCAGCGACAAAGCAATCCAGTTTCCTCGGC...GCTCTGGTTTTTGTTTAGGGTGTGATAATATAGAGACAGTTGGGTAACATAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAATGGGTAGAAATAGCCTaGAGGCCCCCACTGGGTAGA +
Preference number: 5 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKWVEIA*RPPLGR
Trigger: TCTACCCAGTGGGGGCCTCAAGGCTATTTCTACCCA...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp GCTTATGTTACCCAACTGTCTCTATATTATCACACCCTAAACAAAAACCAGAGCGCCATGAAGCACCCCTaGGGCACAGTCCATTCATTA +
Preference number: 5 (lower is better)
Translates to: AYVTQLSLYYHTLNKNQSAMKHP*GTVHSL
Trigger: TAATGAATGGACTGTGCCCAAGGGGTGCTTCATGGC...GCTCTGGTTTTTGTTTAGGGTGTGATAATATAGAGACAGTTGGGTAACATAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp ATAATTGAACAAATGCAACAAATGCTCACTCCCTCTCAAGAAATGAACCTATGGAGAGATGGCTTGCCCTaGTGCCATGGCAGAGTACCA +
Preference number: 5 (lower is better)
Translates to: IIEQMQQMLTPSQEMNLWRDGLP*CHGRVP
Trigger: TGGTACTCTGCCATGGCACAAGGGCAAGCCATCTCT...CCATAGGTTCATTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTTCAATTAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp GCTTATGTTACCCAACTGTCTCTATATTATCACACCCTAAACAAAAACCAGAGCTGCTCTGACGGAAACTaGTATGGGGCTGTTGCCCTT +
Preference number: 5 (lower is better)
Translates to: AYVTQLSLYYHTLNKNQSCSDGN*YGAVAL
Trigger: AAGGGCAACAGCCCCATACAAGTTTCCGTCAGAGCA...GCTCTGGTTTTTGTTTAGGGTGTGATAATATAGAGACAGTTGGGTAACATAAGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp ATAATTGAACAAATGCAACAAATGCTCACTCCCTCTCAAGAAATGAACCTATGGGCCGAGGAAACTGGATaGCTTTGTCGCTGGAACACT +
Preference number: 5 (lower is better)
Translates to: IIEQMQQMLTPSQEMNLWAEETG*LCRWNT
Trigger: AGTGTTCCAGCGACAAAGCAATCCAGTTTCCTCGGC...CCATAGGTTCATTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTTCAATTAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAATTGAGCCCTAACACCTaGCTTCCCCCGTTGCTATTG +
Preference number: 5 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKLSPNT*LPPLLL
Trigger: CAATAGCAACGGGGGAAGCAAGGTGTTAGGGCTCAA...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp TTCTACACACCTCACAGATGTCGTGAGGCTCTTGAACGAAGCCGTTATATACAGTCAATCTCTTCATATTaGAGCCCTAACACCTTGCTT +
Preference number: 5 (lower is better)
Translates to: FYTPHRCREALERSRYIQSISSY*SPNTLL
Trigger: AAGCAAGGTGTTAGGGCTCAAATATGAAGAGATTGA...CTGTATATAACGGCTTCGTTCAAGAGCCTCACGACATCTGTGAGGTGTGTAGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAATGCTCTGACGGAAACTaGTATGGGGCTGTTGCCCTT +
Preference number: 5 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKCSDGN*YGAVAL
Trigger: AAGGGCAACAGCCCCATACAAGTTTCCGTCAGAGCA...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 90 bp AATGGAAGGAAAACTTCATTCCCCTCTCGTCTCCCTTTAATGGTGTaGTCATCGTTTATGAGACAGTCAATCTCTTCATATTTGAGCCCT +
Preference number: 5 (lower is better)
Translates to: NGRKTSFPSRLPLMV*SSFMRQSISSYLSP
Trigger: AGGGCTCAAATATGAAGAGATTGACTGTCTCATAAACGATGAGCACACCATTAAAGGGAGACGAGAGGGGAATGAAGTTTTCCTTCCATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 90 bp CTGTTTCATATACTTCTATGTGAGGGGGTTTCTCGGTTAGATTCTTaGTGTAATGACTTAGCCCATACTGTGCAATCTGGATTGGGTAGA +
Preference number: 5 (lower is better)
Translates to: LFHILLCEGVSRLDS*CNDLAHTVQSGLGR
Trigger: TCTACCCAATCCAGATTGCACAGTATGGGCTAAGTCATTACAGCAAGAATCTAACCGAGAAACCCCCTCACATAGAAGTATATGAAACAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AAGTGTCATTATTTGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAACTGTCTCACTCCACTTATACATTaGACTCTGTCTCGGACTTCC +
Preference number: 5 (lower is better)
Translates to: KCHYLFLERVRLMLPNCLTPLIH*TLSRTS
Trigger: GGAAGTCCGAGACAGAGTCAAATGTATAAGTGGAGT...GAGACAGTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AAGTGTCATTATTTGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAACTGTCTCACTGTGCAATCTGGATaGGGTAGAAATAGCCTTGAG +
Preference number: 5 (lower is better)
Translates to: KCHYLFLERVRLMLPNCLTVQSG*GRNSLE
Trigger: CTCAAGGCTATTTCTACCCAATCCAGATTGCACAGT...GAGACAGTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AGGAGGAGGTACCAATGGTCAATTTCAAAGCATCAAGTCTGTCACAAGTTTAGGTTTTTGGGCATGATTTaGGTTGGCTTGACAGCTTTT +
Preference number: 5 (lower is better)
Translates to: RRRYQWSISKHQVCHKFRFLGMI*VGLTAF
Trigger: AAAAGCTGTCAAGCCAACCAAAATCATGCCCAAAAA...CCTAAACTTGTGACAGACTTGATGCTTTGAAATTGACCATTGGTACCTCCTCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAAGTTGAGATGGTAATGTaGTCCAGGAATCCCTTCCCT +
Preference number: 5 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKVEMVM*SRNPFP
Trigger: AGGGAAGGGATTCCTGGACAACATTACCATCTCAAC...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS TCA 90 bp ATTGTAGCCTTCAAAGGACATAAACACACCGTCAGGGTGATAAGGTaGTCTCTGTGCATAGACTTTGGAATAGCTATGAGAGAATTCAAA +
Preference number: 5 (lower is better)
Translates to: IVAFKGHKHTVRVIR*SLCIDFGIAMREFK
Trigger: TTTGAATTCTCTCATAGCTATTCCAAAGTCTATGCACAGAGATCACCTTATCACCCTGACGGTGTGTTTATGTCCTTTGAAGGCTACAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp ATAATTGAACAAATGCAACAAATGCTCACTCCCTCTCAAGAAATGAACCTATGGGGAAACTGGATTGCTTaGTCGCTGGAACACTTATTC +
Preference number: 5 (lower is better)
Translates to: IIEQMQQMLTPSQEMNLWGNWIA*SLEHLF
Trigger: GAATAAGTGTTCCAGCGACAAAGCAATCCAGTTTCC...CCATAGGTTCATTTCTTGAGAGGGAGTGAGCATTTGTTGCATTTGTTCAATTAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp GTCTTCGCTTTTATTGCTGAGACAAATGTGCATGTTCAGATGTTGCTGAAACACTCAATCTCTTCATATTaGAGCCCTAACACCTTGCTT +
Preference number: 5 (lower is better)
Translates to: VFAFIAETNVHVQMLLKHSISSY*SPNTLL
Trigger: AAGCAAGGTGTTAGGGCTCAAATATGAAGAGATTGA...GTGTTTCAGCAACATCTGAACATGCACATTTGTCTCAGCAATAAAAGCGAAGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AAGTGTCATTATTTGTTCCTAGAAAGGGTGAGGCTTATGTTACCCAACTGTCTCTTTTTGGGCATGATTTaGGTTGGCTTGACAGCTTTT +
Preference number: 5 (lower is better)
Translates to: KCHYLFLERVRLMLPNCLFLGMI*VGLTAF
Trigger: AAAAGCTGTCAAGCCAACCAAAATCATGCCCAAAAA...GAGACAGTTGGGTAACATAAGCCTCACCCTTTCTAGGAACAAATAATGACACTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp GCTTATGTTACCCAACTGTCTCTATATTATCACACCCTAAACAAAAACCAGAGCCTCTTGACAAATTCTTaGAAGATTGGGGACTCATCG +
Preference number: 5 (lower is better)
Translates to: AYVTQLSLYYHTLNKNQSLLTNS*KIGDSS
Trigger: CGATGAGTCCCCAATCTTCAAAGAATTTGTCAAGAG...GCTCTGGTTTTTGTTTAGGGTGTGATAATATAGAGACAGTTGGGTAACATAAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAACTCTTGACAAATTCTTaGAAGATTGGGGACTCATCG +
Preference number: 5 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKLLTNS*KIGDSS
Trigger: CGATGAGTCCCCAATCTTCAAAGAATTTGTCAAGAG...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp GCTTATGTTACCCAACTGTCTCTATATTATCACACCCTAAACAAAAACCAGAGCATGATTTTGGTTGGCTaGACAGCTTTTGTGTTAGAA +
Preference number: 5 (lower is better)
Translates to: AYVTQLSLYYHTLNKNQSMILVG*TAFVLE
Trigger: TTCTAACACAAAAGCTGTCAAGCCAACCAAAATCAT...GCTCTGGTTTTTGTTTAGGGTGTGATAATATAGAGACAGTTGGGTAACATAAGC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS-3UTR CAA 90 bp AACAATTACAAGAACAAACCAGCAGCTTTTGGTAAGAGTCTGTACACCAACAAAATGATTTTGGTTGGCTaGACAGCTTTTGTGTTAGAA +
Preference number: 5 (lower is better)
Translates to: NNYKNKPAAFGKSLYTNKMILVG*TAFVLE
Trigger: TTCTAACACAAAAGCTGTCAAGCCAACCAAAATCAT...TTTGTTGGTGTACAGACTCTTACCAAAAGCTGCTGGTTTGTTCTTGTAATTGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS TCA 72 bp AGTCCCAGCGGGCCAGGTTGGGAGCAATGCCAAGCATaGAGTGGCGGAGGTCATAGATGGTCCCGGAGCCAG +
Preference number: 6 (lower is better)
Translates to: SPSGPGWEQCQA*SGGGHRWSRSQ
Trigger: CTGGCTCCGGGACCATCTATGACCTCCGCCACTTCATGCTTGGCATTGCTCCCAACCTGGCCCGCTGGGACT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS TCA 72 bp AAGCCCCCAACAACAGGGGGTGCCTTCTGTTGTTCCTaGGGAAATGCCTCTTCTGACTGCTGTTTGGCTATG +
Preference number: 6 (lower is better)
Translates to: KPPTTGGAFCCS*GNASSDCCLAM
Trigger: CATAGCCAAACAGCAGTCAGAAGAGGCATTTCCTCAGGAACAACAGAAGGCACCCCCTGTTGTTGGGGGCTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CAA 72 bp CACCTTTCTCATCCTGGTTCCTCACTAGCCAGTCACTaGCAGCAAAGAATGCAGCCATGTGGGCTGTGGTTG +
Preference number: 6 (lower is better)
Translates to: HLSHPGSSLASH*QQRMQPCGLWL
Trigger: CAACCACAGCCCACATGGCTGCATTCTTTGCTGCAAGTGACTGGCTAGTGAGGAACCAGGATGAGAAAGGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS TCA 72 bp GAGGTCAGTGACCAGGTCTCTGGTAACTGTACTCCATaGAGTTCTGGGCCCAATGCCGTAGTATATGTCCCT +
Preference number: 6 (lower is better)
Translates to: EVSDQVSGNCTP*SSGPNAVVYVP
Trigger: AGGGACATATACTACGGCATTGGGCCCAGAACTTCATGGAGTACAGTTACCAGAGACCTGGTCACTGACCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS TCA 72 bp GGGTGCCTTCTGTTGTTCCTGAGGAAATGCCTCTTCTaGCTGCTGTTTGGCTATGTGGTTGGCATAGTGGTT +
Preference number: 6 (lower is better)
Translates to: GCLLLFLRKCLF*LLFGYVVGIVV
Trigger: AACCACTATGCCAACCACATAGCCAAACAGCAGTCAGAAGAGGCATTTCCTCAGGAACAACAGAAGGCACCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CAA 72 bp AACACGGCTTTAACTCCATGCTGCTCTGACGGAAACTaGTATGGGGCTGTTGCCCTTAAAGCTGAACTGAGG +
Preference number: 6 (lower is better)
Translates to: NTALTPCCSDGN*YGAVALKAELR
Trigger: CCTCAGTTCAGCTTTAAGGGCAACAGCCCCATACAAGTTTCCGTCAGAGCAGCATGGAGTTAAAGCCGTGTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CCA 72 bp GTAGCTTTTCCACCTCTTGACAAATTCTTTGAAGATTaGGGACTCATCGATGGTGCTGAGCAGCTGCAGCTG +
Preference number: 6 (lower is better)
Translates to: VAFPPLDKFFED*GLIDGAEQLQL
Trigger: CAGCTGCAGCTGCTCAGCACCATCGATGAGTCCCCAATCTTCAAAGAATTTGTCAAGAGGTGGAAAAGCTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CAA 90 bp GCAGCAAAGAATGCAGCCATGTGGGCTGTGGTTGAGATGGTAATGTaGTCCAGGAATCCCTTCCCTTTTGCAATCAACCTAACCACCTTT +
Preference number: 6 (lower is better)
Translates to: AAKNAAMWAVVEMVM*SRNPFPFAINLTTF
Trigger: AAAGGTGGTTAGGTTGATTGCAAAAGGGAAGGGATTCCTGGACAACATTACCATCTCAACCACAGCCCACATGGCTGCATTCTTTGCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CAA 90 bp AAAGACACACCTTCACTGGTTTCTGGAGCAATAAACTGTTTAACATaGGTGGATCTAGACTTGTCTGCCACACTGGCCATGAAGCACCCC +
Preference number: 6 (lower is better)
Translates to: KDTPSLVSGAINCLT*VDLDLSATLAMKHP
Trigger: GGGGTGCTTCATGGCCAGTGTGGCAGACAAGTCTAGATCCACCAATGTTAAACAGTTTATTGCTCCAGAAACCAGTGAAGGTGTGTCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS TCA 72 bp TTCTGGGCCCAATGCCGTAGTATATGTCCCTGTCTCTaGAAGCAATCAGCTGGGTGTTTGAGACATAATGCA +
Preference number: 6 (lower is better)
Translates to: FWAQCRSICPCL*KQSAGCLRHNA
Trigger: TGCATTATGTCTCAAACACCCAGCTGATTGCTTTCAGAGACAGGGACATATACTACGGCATTGGGCCCAGAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 72 bp CAGTCATGTTTATTCATGAACACGGCTTTAACTCCATaGTGCTCTGACGGAAACTTGTATGGGGCTGTTGCC +
Preference number: 6 (lower is better)
Translates to: QSCLFMNTALTP*CSDGNLYGAVA
Trigger: GGCAACAGCCCCATACAAGTTTCCGTCAGAGCAGCATGGAGTTAAAGCCGTGTTCATGAATAAACATGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CAA 72 bp AGACAGTCAATCTCTTCATATTTGAGCCCTAACACCTaGCTTCCCCCGTTGCTATTGAAGCCCCCAACAACA +
Preference number: 6 (lower is better)
Translates to: RQSISSYLSPNT*LPPLLLKPPTT
Trigger: TGTTGTTGGGGGCTTCAATAGCAACGGGGGAAGCAAGGTGTTAGGGCTCAAATATGAAGAGATTGACTGTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CAA 72 bp AATGCAGCCATGTGGGCTGTGGTTGAGATGGTAATGTaGTCCAGGAATCCCTTCCCTTTTGCAATCAACCTA +
Preference number: 6 (lower is better)
Translates to: NAAMWAVVEMVM*SRNPFPFAINL
Trigger: TAGGTTGATTGCAAAAGGGAAGGGATTCCTGGACAACATTACCATCTCAACCACAGCCCACATGGCTGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CAA 90 bp TCCACTCTGAATCCACTACTCAAGTGCCGAGGAAACTGGATTGCTTaGTCGCTGGAACACTTATTCCACAAAAGTACTGTGACCAAAGTG +
Preference number: 6 (lower is better)
Translates to: STLNPLLKCRGNWIA*SLEHLFHKSTVTKV
Trigger: CACTTTGGTCACAGTACTTTTGTGGAATAAGTGTTCCAGCGACAAAGCAATCCAGTTTCCTCGGCACTTGAGTAGTGGATTCAGAGTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CAA 90 bp TTAATGGTGTGCTCATCGTTTATGAGACAGTCAATCTCTTCATATTaGAGCCCTAACACCTTGCTTCCCCCGTTGCTATTGAAGCCCCCA +
Preference number: 6 (lower is better)
Translates to: LMVCSSFMRQSISSY*SPNTLLPPLLLKPP
Trigger: TGGGGGCTTCAATAGCAACGGGGGAAGCAAGGTGTTAGGGCTCAAATATGAAGAGATTGACTGTCTCATAAACGATGAGCACACCATTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 72 bp TTTTCTAATCCATCCACTCTGAATCCACTACTCAAGTaGCGAGGAAACTGGATTGCTTTGTCGCTGGAACAC +
Preference number: 6 (lower is better)
Translates to: FSNPSTLNPLLK*RGNWIALSLEH
Trigger: GTGTTCCAGCGACAAAGCAATCCAGTTTCCTCGGCACTTGAGTAGTGGATTCAGAGTGGATGGATTAGAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 72 bp TCATGTTTATTCATGAACACGGCTTTAACTCCATGCTaGTCTGACGGAAACTTGTATGGGGCTGTTGCCCTT +
Preference number: 6 (lower is better)
Translates to: SCLFMNTALTPC*SDGNLYGAVAL
Trigger: AAGGGCAACAGCCCCATACAAGTTTCCGTCAGAGCAGCATGGAGTTAAAGCCGTGTTCATGAATAAACATGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CCA 72 bp TCCACTCTGAATCCACTACTCAAGTGCCGAGGAAACTaGATTGCTTTGTCGCTGGAACACTTATTCCACAAA +
Preference number: 6 (lower is better)
Translates to: STLNPLLKCRGN*IALSLEHLFHK
Trigger: TTTGTGGAATAAGTGTTCCAGCGACAAAGCAATCCAGTTTCCTCGGCACTTGAGTAGTGGATTCAGAGTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CAA 72 bp CCTTCACTGGTTTCTGGAGCAATAAACTGTTTAACATaGGTGGATCTAGACTTGTCTGCCACACTGGCCATG +
Preference number: 6 (lower is better)
Translates to: PSLVSGAINCLT*VDLDLSATLAM
Trigger: CATGGCCAGTGTGGCAGACAAGTCTAGATCCACCAATGTTAAACAGTTTATTGCTCCAGAAACCAGTGAAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS TCA 72 bp GAAACTTGTATGGGGCTGTTGCCCTTAAAGCTGAACTaGGGAATACATAGTCTTTCGTTAGAAGATAGGCCC +
Preference number: 6 (lower is better)
Translates to: ETCMGLLPLKLN*GIHSLSLEDRP
Trigger: GGGCCTATCTTCTAACGAAAGACTATGTATTCCTCAGTTCAGCTTTAAGGGCAACAGCCCCATACAAGTTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 72 bp TCTGAATCCACTACTCAAGTGCCGAGGAAACTGGATTaGTTTGTCGCTGGAACACTTATTCCACAAAAGTAC +
Preference number: 6 (lower is better)
Translates to: SESTTQVPRKLD*FVAGTLIPQKY
Trigger: GTACTTTTGTGGAATAAGTGTTCCAGCGACAAAGCAATCCAGTTTCCTCGGCACTTGAGTAGTGGATTCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CAA 72 bp TGCTCATCGTTTATGAGACAGTCAATCTCTTCATATTaGAGCCCTAACACCTTGCTTCCCCCGTTGCTATTG +
Preference number: 6 (lower is better)
Translates to: CSSFMRQSISSY*SPNTLLPPLLL
Trigger: CAATAGCAACGGGGGAAGCAAGGTGTTAGGGCTCAAATATGAAGAGATTGACTGTCTCATAAACGATGAGCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 72 bp ATACTTCTATGTGAGGGGGTTTCTCGGTTAGATTCTTaGTGTAATGACTTAGCCCATACTGTGCAATCTGGA +
Preference number: 6 (lower is better)
Translates to: ILLCEGVSRLDS*CNDLAHTVQSG
Trigger: TCCAGATTGCACAGTATGGGCTAAGTCATTACAGCAAGAATCTAACCGAGAAACCCCCTCACATAGAAGTAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 72 bp CCATTCATTAGGTCTGATGTTTCTGTCCCTGTCTTCTaGTGTTTCATATACTTCTATGTGAGGGGGTTTCTC +
Preference number: 6 (lower is better)
Translates to: PFIRSDVSVPVF*CFIYFYVRGFL
Trigger: GAGAAACCCCCTCACATAGAAGTATATGAAACAGCAGAAGACAGGGACAGAAACATCAGACCTAATGAATGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CAA 72 bp TTTGCAATCAACCTAACCACCTTTTTGGGCATGATTTaGGTTGGCTTGACAGCTTTTGTGTTAGAAAGGCCC +
Preference number: 6 (lower is better)
Translates to: FAINLTTFLGMI*VGLTAFVLERP
Trigger: GGGCCTTTCTAACACAAAAGCTGTCAAGCCAACCAAAATCATGCCCAAAAAGGTGGTTAGGTTGATTGCAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS TCA 72 bp TTCAAAGGACATAAACACACCGTCAGGGTGATAAGGTaGTCTCTGTGCATAGACTTTGGAATAGCTATGAGA +
Preference number: 6 (lower is better)
Translates to: FKGHKHTVRVIR*SLCIDFGIAMR
Trigger: TCTCATAGCTATTCCAAAGTCTATGCACAGAGATCACCTTATCACCCTGACGGTGTGTTTATGTCCTTTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS CCA 72 bp CGTCAGGGTGATAAGGTGATCTCTGTGCATAGACTTTaGAATAGCTATGAGAGAATTCAAATCGATCATAGC +
Preference number: 6 (lower is better)
Translates to: RQGDKVISVHRL*NSYERIQIDHS
Trigger: GCTATGATCGATTTGAATTCTCTCATAGCTATTCCAAAGTCTATGCACAGAGATCACCTTATCACCCTGACG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7
CDS GCA 72 bp AAAACTTCATTCCCCTCTCGTCTCCCTTTAATGGTGTaGTCATCGTTTATGAGACAGTCAATCTCTTCATAT +
Preference number: 6 (lower is better)
Translates to: KTSFPSRLPLMV*SSFMRQSISSY
Trigger: ATATGAAGAGATTGACTGTCTCATAAACGATGAGCACACCATTAAAGGGAGACGAGAGGGGAATGAAGTTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000034785.8
ENSMUST00000185675.7