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Pregenerated sensors for GKN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000030048

Ensembl transcript IDs: ENSMUST00000032127.6

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS CCA 90 bp ACCGGAAGCCTGTTTGCCCAGGGCCTGGGTAATATCATCCAAACTTaGGAAGGCTGCTGGGTCCATCTTTGCCAGAACACAGGCCATCTT +
Preference number: 5 (lower is better)
Translates to: TGSLFAQGLGNIIQT*EGCWVHLCQNTGHL
Trigger: AAGATGGCCTGTGTTCTGGCAAAGATGGACCCAGCAGCCTTCCCAAGTTTGGATGATATTACCCAGGCCCTGGGCAAACAGGCTTCCGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032127.6
CDS GCA 90 bp CTGTTTGCCCAGGGCCTGGGTAATATCATCCAAACTTGGGAAGGCTaGTGGGTCCATCTTTGCCAGAACACAGGCCATCTTGCTAAACAG +
Preference number: 5 (lower is better)
Translates to: LFAQGLGNIIQTWEG*WVHLCQNTGHLAKQ
Trigger: CTGTTTAGCAAGATGGCCTGTGTTCTGGCAAAGATGGACCCAGCAGCCTTCCCAAGTTTGGATGATATTACCCAGGCCCTGGGCAAACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032127.6
CDS CCA 90 bp TTTGCCCAGGGCCTGGGTAATATCATCCAAACTTGGGAAGGCTGCTaGGTCCATCTTTGCCAGAACACAGGCCATCTTGCTAAACAGCTT +
Preference number: 5 (lower is better)
Translates to: FAQGLGNIIQTWEGC*VHLCQNTGHLAKQL
Trigger: AAGCTGTTTAGCAAGATGGCCTGTGTTCTGGCAAAGATGGACCCAGCAGCCTTCCCAAGTTTGGATGATATTACCCAGGCCCTGGGCAAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032127.6
CDS CAA 72 bp GCTGCTGGGTCCATCTTTGCCAGAACACAGGCCATCTaGCTAAACAGCTTAGCTGCCAGGAGGTCGTTCTTG +
Preference number: 6 (lower is better)
Translates to: AAGSIFARTQAI*LNSLAARRSFL
Trigger: CAAGAACGACCTCCTGGCAGCTAAGCTGTTTAGCAAGATGGCCTGTGTTCTGGCAAAGATGGACCCAGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032127.6
CDS TCA 72 bp AGAGCCCAGGGATCTCACCACAAATGGACAGTCCCATaGAGGACAGAAGCTGGAGCTCAGAACATGAGTCTG +
Preference number: 6 (lower is better)
Translates to: RAQGSHHKWTVP*RTEAGAQNMSL
Trigger: CAGACTCATGTTCTGAGCTCCAGCTTCTGTCCTTCATGGGACTGTCCATTTGTGGTGAGATCCCTGGGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032127.6
CDS GCA 72 bp CAGGGCCTGGGTAATATCATCCAAACTTGGGAAGGCTaGTGGGTCCATCTTTGCCAGAACACAGGCCATCTT +
Preference number: 6 (lower is better)
Translates to: QGLGNIIQTWEG*WVHLCQNTGHL
Trigger: AAGATGGCCTGTGTTCTGGCAAAGATGGACCCAGCAGCCTTCCCAAGTTTGGATGATATTACCCAGGCCCTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032127.6
CDS CCA 72 bp GGCCTGGGTAATATCATCCAAACTTGGGAAGGCTGCTaGGTCCATCTTTGCCAGAACACAGGCCATCTTGCT +
Preference number: 6 (lower is better)
Translates to: GLGNIIQTWEGC*VHLCQNTGHLA
Trigger: AGCAAGATGGCCTGTGTTCTGGCAAAGATGGACCCAGCAGCCTTCCCAAGTTTGGATGATATTACCCAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032127.6
CDS CCA 72 bp CTGTTTGCCCAGGGCCTGGGTAATATCATCCAAACTTaGGAAGGCTGCTGGGTCCATCTTTGCCAGAACACA +
Preference number: 6 (lower is better)
Translates to: LFAQGLGNIIQT*EGCWVHLCQNT
Trigger: TGTGTTCTGGCAAAGATGGACCCAGCAGCCTTCCCAAGTTTGGATGATATTACCCAGGCCCTGGGCAAACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032127.6
CDS GCA 72 bp TGCCAGAACACAGGCCATCTTGCTAAACAGCTTAGCTaGCAGGAGGTCGTTCTTGTAGTCCATGACTCCATC +
Preference number: 6 (lower is better)
Translates to: CQNTGHLAKQLS*QEVVLVVHDSI
Trigger: GATGGAGTCATGGACTACAAGAACGACCTCCTGGCAGCTAAGCTGTTTAGCAAGATGGCCTGTGTTCTGGCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000032127.6
CDS CCA 72 bp AAAGTAGGTGGGGACGGCTCTGCACAGGTCTTTGATTaGCACTCCGTATTGGGCCAAGTTTTTGATTCGGCT +
Preference number: 6 (lower is better)
Translates to: KVGGDGSAQVFD*HSVLGQVFDSA
Trigger: AGCCGAATCAAAAACTTGGCCCAATACGGAGTGCCAATCAAAGACCTGTGCAGAGCCGTCCCCACCTACTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032127.6
CDS CCA 72 bp ACGGCTCTGCACAGGTCTTTGATTGGCACTCCGTATTaGGCCAAGTTTTTGATTCGGCTGGGTAAAACTGTG +
Preference number: 6 (lower is better)
Translates to: TALHRSLIGTPY*AKFLIRLGKTV
Trigger: CACAGTTTTACCCAGCCGAATCAAAAACTTGGCCCAATACGGAGTGCCAATCAAAGACCTGTGCAGAGCCGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000032127.6