Pregenerated sensors for GKN1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030050Ensembl transcript IDs: ENSMUST00000032129.3
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GAGTTTACAGAAGGGGGTGTGCAGTTATGGGAGAGAGCGGCAATCTaGGGTTCTCCGTATCTGCAGGCGTGTGTTCTAGTCTCTCATTCC | + |
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Preference number: 1 (lower is better) Translates to: EFTEGGVQLWERAAI*GSPYLQACVLVSHS Trigger: GGAATGAGAGACTAGAACACACGCCTGCAGATACGGAGAACCTCAGATTGCCGCTCTCTCCCATAACTGCACACCCCCTTCTGTAAACTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR TCA 90 bp | CAGGCGTGTGTTCTAGTCTCTCATTCCCAGTGTCTCCTCCTTGGGTaGTTATTGATACTTCTGGCTCCTTGCAGGAAAAACACCCTTGCT | + |
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Preference number: 1 (lower is better) Translates to: QACVLVSHSQCLLLG*LLILLAPCRKNTLA Trigger: AGCAAGGGTGTTTTTCCTGCAAGGAGCCAGAAGTATCAATAATCACCCAAGGAGGAGACACTGGGAATGAGAGACTAGAACACACGCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR-3UTR GCA 90 bp | GTATCTGCAGGCGTGTGTTCTAGTCTCTCATTCCCAGTGTCTCCTCCTTGGGTGATACTTCTGGCTCCTTaGAGGAAAAACACCCTTGCT | + |
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Preference number: 2 (lower is better) Translates to: VSAGVCSSLSFPVSPPWVILLAP*RKNTLA Trigger: AGCAAGGGTGTTTTTCCTGCAAGGAGCCAGAAGTAT...CACCCAAGGAGGAGACACTGGGAATGAGAGACTAGAACACACGCCTGCAGATAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR-3UTR GCA 90 bp | CAAGGGCCATCTTCAGGTGAAAGAAAGAAGCAGAGTTTACAGAAGGGGGTGTGCCCCAAACCCAGGCTGTaGTTTGTAGTATTTGAAAAC | + |
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Preference number: 2 (lower is better) Translates to: QGPSSGERKKQSLQKGVCPKPRL*FVVFEN Trigger: GTTTTCAAATACTACAAAGCACAGCCTGGGTTTGGG...GCACACCCCCTTCTGTAAACTCTGCTTCTTTCTTTCACCTGAAGATGGCCCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR-3UTR TCA 90 bp | AAAAGCAAGGGCCATCTTCAGGTGAAAGAAAGAAGCAGAGTTTACAGAAGGGGGGTGCTTTGTAGTATTTaGAAACTCTGGAGGGATGCT | + |
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Preference number: 2 (lower is better) Translates to: KSKGHLQVKERSRVYRRGVLCSI*KLWRDA Trigger: AGCATCCCTCCAGAGTTTTCAAATACTACAAAGCAC...CCCCCTTCTGTAAACTCTGCTTCTTTCTTTCACCTGAAGATGGCCCTTGCTTTT 44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR TCA 72 bp | AAAACTCTGGAGGGATGCTTTATAGCGGAGAGGTCCTaGATACAGGCTGGCAGGTGCCACATTGGACTCCCA | + |
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Preference number: 3 (lower is better) Translates to: KTLEGCFIAERS*IQAGRCHIGLP Trigger: TGGGAGTCCAATGTGGCACCTGCCAGCCTGTATTCAGGACCTCTCCGCTATAAAGCATCCCTCCAGAGTTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR CCA 72 bp | GGGATGCTTTATAGCGGAGAGGTCCTGAATACAGGCTaGCAGGTGCCACATTGGACTCCCATAGAAGTCATG | + |
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Preference number: 3 (lower is better) Translates to: GMLYSGEVLNTG*QVPHWTPIEVM Trigger: CATGACTTCTATGGGAGTCCAATGTGGCACCTGCCAGCCTGTATTCAGGACCTCTCCGCTATAAAGCATCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR CCA 72 bp | GGAGAGGTCCTGAATACAGGCTGGCAGGTGCCACATTaGACTCCCATAGAAGTCATGAGGCATGTCATTACA | + |
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Preference number: 3 (lower is better) Translates to: GEVLNTGWQVPH*TPIEVMRHVIT Trigger: TGTAATGACATGCCTCATGACTTCTATGGGAGTCCAATGTGGCACCTGCCAGCCTGTATTCAGGACCTCTCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR-3UTR CAA 90 bp | GCAGGCGTGTGTTCTAGTCTCTCATTCCCAGTGTCTCCTCCTTGGGTGATTATTGATACTTCTGGCTCCTaGCAGGAAAAACACCCTTGC | + |
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Preference number: 3 (lower is better) Translates to: AGVCSSLSFPVSPPWVIIDTSGS*QEKHPC Trigger: GCAAGGGTGTTTTTCCTGCAAGGAGCCAGAAGTATC...AATAATCACCCAAGGAGGAGACACTGGGAATGAGAGACTAGAACACACGCCTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR GCA 72 bp | GGTGAAAGAAAGAAGCAGAGTTTACAGAAGGGGGTGTaGAGTTATGGGAGAGAGCGGCAATCTGAGGTTCTC | + |
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Preference number: 3 (lower is better) Translates to: GERKKQSLQKGV*SYGRERQSEVL Trigger: GAGAACCTCAGATTGCCGCTCTCTCCCATAACTGCACACCCCCTTCTGTAAACTCTGCTTCTTTCTTTCACC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR-3UTR CAA 90 bp | GACTCCCATAGAAGTCATGAGGCATGTCATTACAAACTGGATGTGCTGCCACGTTCTCATAATCAAGCATaGCGATGGTCAGAGCCCACG | + |
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Preference number: 3 (lower is better) Translates to: DSHRSHEACHYKLDVLPRSHNQA*RWSEPT Trigger: CGTGGGCTCTGACCATCGCAATGCTTGATTATGAGA...ACGTGGCAGCACATCCAGTTTGTAATGACATGCCTCATGACTTCTATGGGAGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR TCA 72 bp | TCTCTCATTCCCAGTGTCTCCTCCTTGGGTGATTATTaGTACTTCTGGCTCCTTGCAGGAAAAACACCCTTG | + |
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Preference number: 3 (lower is better) Translates to: SLIPSVSSLGDY*YFWLLAGKTPL Trigger: CAAGGGTGTTTTTCCTGCAAGGAGCCAGAAGTATCAATAATCACCCAAGGAGGAGACACTGGGAATGAGAGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR TCA 72 bp | GTTCTAGTCTCTCATTCCCAGTGTCTCCTCCTTGGGTaGTTATTGATACTTCTGGCTCCTTGCAGGAAAAAC | + |
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Preference number: 3 (lower is better) Translates to: VLVSHSQCLLLG*LLILLAPCRKN Trigger: GTTTTTCCTGCAAGGAGCCAGAAGTATCAATAATCACCCAAGGAGGAGACACTGGGAATGAGAGACTAGAAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR TCA 72 bp | TCATTACAAACTGGATGTGCTGCCACGTGGGTTTATTaGGCCTTAAAGAAGCTAATCACAACCCCCAGAGAA | + |
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Preference number: 3 (lower is better) Translates to: SLQTGCAATWVY*ALKKLITTPRE Trigger: TTCTCTGGGGGTTGTGATTAGCTTCTTTAAGGCTCAATAAACCCACGTGGCAGCACATCCAGTTTGTAATGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR CCA 72 bp | ACTCCCATAGAAGTCATGAGGCATGTCATTACAAACTaGATGTGCTGCCACGTGGGTTTATTGAGCCTTAAA | + |
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Preference number: 3 (lower is better) Translates to: TPIEVMRHVITN*MCCHVGLLSLK Trigger: TTTAAGGCTCAATAAACCCACGTGGCAGCACATCCAGTTTGTAATGACATGCCTCATGACTTCTATGGGAGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR GCA 72 bp | GAAGTCATGAGGCATGTCATTACAAACTGGATGTGCTaGCACGTGGGTTTATTGAGCCTTAAAGAAGCTAAT | + |
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Preference number: 3 (lower is better) Translates to: EVMRHVITNWMC*HVGLLSLKEAN Trigger: ATTAGCTTCTTTAAGGCTCAATAAACCCACGTGGCAGCACATCCAGTTTGTAATGACATGCCTCATGACTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR GCA 72 bp | ATAGAAGTCATGAGGCATGTCATTACAAACTGGATGTaGTGCCACGTGGGTTTATTGAGCCTTAAAGAAGCT | + |
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Preference number: 3 (lower is better) Translates to: IEVMRHVITNWM*CHVGLLSLKEA Trigger: AGCTTCTTTAAGGCTCAATAAACCCACGTGGCAGCACATCCAGTTTGTAATGACATGCCTCATGACTTCTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR CCA 90 bp | GTGTGCAGTTATGGGAGAGAGCGGCAATCTGAGGTTCTCCGTATCTGCAGGCGTCCTGAAGGGAGGGCATaGCATCCTTGTTCATTCTGT | + |
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Preference number: 4 (lower is better) Translates to: VCSYGRERQSEVLRICRRPEGRA*HPCSFC Trigger: ACAGAATGAACAAGGATGCCATGCCCTCCCTTCAGG...ACGCCTGCAGATACGGAGAACCTCAGATTGCCGCTCTCTCCCATAACTGCACAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR CAA 72 bp | CGGAGAGGTCCTGAATACAGGCTGGCAGGTGCCACATaGGACTCCCATAGAAGTCATGAGGCATGTCATTAC | + |
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Preference number: 4 (lower is better) Translates to: RRGPEYRLAGAT*DSHRSHEACHY Trigger: GTAATGACATGCCTCATGACTTCTATGGGAGTCCAATGTGGCACCTGCCAGCCTGTATTCAGGACCTCTCCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR TCA 90 bp | GCAGGCGTGTGTTCTAGTCTCTCATTCCCAGTGTCTCCTCCTTGGGTGATTATTCGTTGTGCACACCATTaGTGCTCACCGACTGCTGTC | + |
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Preference number: 4 (lower is better) Translates to: AGVCSSLSFPVSPPWVIIRCAHH*CSPTAV Trigger: GACAGCAGTCGGTGAGCATCAATGGTGTGCACAACG...AATAATCACCCAAGGAGGAGACACTGGGAATGAGAGACTAGAACACACGCCTGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR CCA 90 bp | CAAGGGCCATCTTCAGGTGAAAGAAAGAAGCAGAGTTTACAGAAGGGGGTGTGCAGTACATCAAGTCCTTaGGAGGAGCTCCTCCAGGCC | + |
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Preference number: 4 (lower is better) Translates to: QGPSSGERKKQSLQKGVCSTSSP*EELLQA Trigger: GGCCTGGAGGAGCTCCTCCCAAGGACTTGATGTACT...GCACACCCCCTTCTGTAAACTCTGCTTCTTTCTTTCACCTGAAGATGGCCCTTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR TCA 90 bp | CAGAAGGGGGTGTGCAGTTATGGGAGAGAGCGGCAATCTGAGGTTCTCCGTATCCTAGTATGTCTCCACTaGTGTTCCACAGAAGGACAT | + |
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Preference number: 4 (lower is better) Translates to: QKGVCSYGRERQSEVLRILVCLH*CSTEGH Trigger: ATGTCCTTCTGTGGAACATCAGTGGAGACATACTAG...GATACGGAGAACCTCAGATTGCCGCTCTCTCCCATAACTGCACACCCCCTTCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR CCA 90 bp | AATACAGGCTGGCAGGTGCCACATTGGACTCCCATAGAAGTCATGAGGCATGTCCAATGCATGACTTCTTaGAGAAGAGTCTCGTGGCAG | + |
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Preference number: 4 (lower is better) Translates to: NTGWQVPHWTPIEVMRHVQCMTS*RRVSWQ Trigger: CTGCCACGAGACTCTTCTCCAAGAAGTCATGCATTG...GACATGCCTCATGACTTCTATGGGAGTCCAATGTGGCACCTGCCAGCCTGTATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR CAA 72 bp | ATCACAACCCCCAGAGAACACTCTCATAATCAAGCATaGCGATGGTCAGAGCCCACGGGTTGTTTTCCTGTG | + |
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Preference number: 4 (lower is better) Translates to: ITTPREHSHNQA*RWSEPTGCFPV Trigger: CACAGGAAAACAACCCGTGGGCTCTGACCATCGCAATGCTTGATTATGAGAGTGTTCTCTGGGGGTTGTGAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR TCA 90 bp | GTGTGTTCTAGTCTCTCATTCCCAGTGTCTCCTCCTTGGGTGATTATTGATACTATTGTATCGAGGTCCTaGAGGGAGGGCATGGCATCC | + |
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Preference number: 4 (lower is better) Translates to: VCSSLSFPVSPPWVIIDTIVSRS*REGMAS Trigger: GGATGCCATGCCCTCCCTTCAGGACCTCGATACAAT...AGTATCAATAATCACCCAAGGAGGAGACACTGGGAATGAGAGACTAGAACACAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR TCA 90 bp | TCCCATAGAAGTCATGAGGCATGTCATTACAAACTGGATGTGCTGCCACGTGGGTCTGTGCACAATGCATaGCTTCTTGGAGAAGAGTCT | + |
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Preference number: 4 (lower is better) Translates to: SHRSHEACHYKLDVLPRGSVHNA*LLGEES Trigger: AGACTCTTCTCCAAGAAGTCATGCATTGTGCACAGA...CCCACGTGGCAGCACATCCAGTTTGTAATGACATGCCTCATGACTTCTATGGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR GCA 90 bp | AAAAGCAAGGGCCATCTTCAGGTGAAAGAAAGAAGCAGAGTTTACAGAAGGGGGATATTGGCCACGTTGTaGACACCATTGATGCTCACC | + |
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Preference number: 4 (lower is better) Translates to: KSKGHLQVKERSRVYRRGILATL*TPLMLT Trigger: GGTGAGCATCAATGGTGTGCACAACGTGGCCAATAT...CCCCCTTCTGTAAACTCTGCTTCTTTCTTTCACCTGAAGATGGCCCTTGCTTTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR GCA 90 bp | GCAGGCGTGTGTTCTAGTCTCTCATTCCCAGTGTCTCCTCCTTGGGTGATTATTTCCTTGTTCATTCTGTaGACAATGCATGACTTCTTG | + |
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Preference number: 4 (lower is better) Translates to: AGVCSSLSFPVSPPWVIISLFIL*TMHDFL Trigger: CAAGAAGTCATGCATTGTGCACAGAATGAACAAGGA...AATAATCACCCAAGGAGGAGACACTGGGAATGAGAGACTAGAACACACGCCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| 3UTR CAA 72 bp | GTCATTACAAACTGGATGTGCTGCCACGTGGGTTTATaGAGCCTTAAAGAAGCTAATCACAACCCCCAGAGA | + |
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Preference number: 4 (lower is better) Translates to: VITNWMCCHVGL*SLKEANHNPQR Trigger: TCTCTGGGGGTTGTGATTAGCTTCTTTAAGGCTCAATAAACCCACGTGGCAGCACATCCAGTTTGTAATGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR GCA 90 bp | CCCAGGCTGTGCTTTGTAGTATTTGAAAACTCTGGAGGGATGCTTTATAGCGGATCATTCTGTGCACAATaGATGACTTCTTGGAGAAGA | + |
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Preference number: 4 (lower is better) Translates to: PRLCFVVFENSGGMLYSGSFCAQ*MTSWRR Trigger: TCTTCTCCAAGAAGTCATGCATTGTGCACAGAATGA...TCCGCTATAAAGCATCCCTCCAGAGTTTTCAAATACTACAAAGCACAGCCTGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR CAA 90 bp | GTGTGCAGTTATGGGAGAGAGCGGCAATCTGAGGTTCTCCGTATCTGCAGGCGTGAGTACATCAAGTCCTaGGGAGGAGCTCCTCCAGGC | + |
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Preference number: 5 (lower is better) Translates to: VCSYGRERQSEVLRICRREYIKS*GGAPPG Trigger: GCCTGGAGGAGCTCCTCCCAAGGACTTGATGTACTC...ACGCCTGCAGATACGGAGAACCTCAGATTGCCGCTCTCTCCCATAACTGCACAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS TCA 90 bp | AGTCCTTGGGAGGAGCTCCTCCAGGCCCTTTACCCTTCTGTTCCTTaGCCATTGTATCGAGGTCCTGAAGGGAGGGCATGGCATCCTTGT | + |
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Preference number: 5 (lower is better) Translates to: SPWEELLQALYPSVP*PLYRGPEGRAWHPC Trigger: ACAAGGATGCCATGCCCTCCCTTCAGGACCTCGATACAATGGTCAAGGAACAGAAGGGTAAAGGGCCTGGAGGAGCTCCTCCCAAGGACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CCA 90 bp | CTCGGCCACATAGGTAGGGATGCCCCTGCACATGCCAGCAATCTTTaGTCCGAATGTATTCAGGTCCTCCACTCTGGTAGGGTTGACGGA | + |
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Preference number: 5 (lower is better) Translates to: LGHIGRDAPAHASNL*SECIQVLHSGRVDG Trigger: TCCGTCAACCCTACCAGAGTGGAGGACCTGAATACATTCGGACCAAAGATTGCTGGCATGTGCAGGGGCATCCCTACCTATGTGGCCGAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS GCA 90 bp | TTCCAGGAGTCCCAGCCGTTATTGTTGTCGATATTGGCCACGTTGTaGACACCATTGATGCTCACCGACTGCTGTCCACTTCCGTCTACA | + |
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Preference number: 5 (lower is better) Translates to: FQESQPLLLSILATL*TPLMLTDCCPLPST Trigger: TGTAGACGGAAGTGGACAGCAGTCGGTGAGCATCAATGGTGTGCACAACGTGGCCAATATCGACAACAATAACGGCTGGGACTCCTGGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR CAA 90 bp | GTATCTGCAGGCGTGTGTTCTAGTCTCTCATTCCCAGTGTCTCCTCCTTGGGTGGAGGGCATGGCATCCTaGTTCATTCTGTGCACAATG | + |
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Preference number: 5 (lower is better) Translates to: VSAGVCSSLSFPVSPPWVEGMAS*FILCTM Trigger: CATTGTGCACAGAATGAACAAGGATGCCATGCCCTC...CACCCAAGGAGGAGACACTGGGAATGAGAGACTAGAACACACGCCTGCAGATAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS TCA 90 bp | CCCAGCCGTTATTGTTGTCGATATTGGCCACGTTGTGCACACCATTaGTGCTCACCGACTGCTGTCCACTTCCGTCTACATTGCCATCAT | + |
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Preference number: 5 (lower is better) Translates to: PSRYCCRYWPRCAHH*CSPTAVHFRLHCHH Trigger: ATGATGGCAATGTAGACGGAAGTGGACAGCAGTCGGTGAGCATCAATGGTGTGCACAACGTGGCCAATATCGACAACAATAACGGCTGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS TCA 90 bp | CCAGGCCCTTTACCCTTCTGTTCCTTGACCATTGTATCGAGGTCCTaGAGGGAGGGCATGGCATCCTTGTTCATTCTGTGCACAATGCAT | + |
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Preference number: 5 (lower is better) Translates to: PGPLPFCSLTIVSRS*REGMASLFILCTMH Trigger: ATGCATTGTGCACAGAATGAACAAGGATGCCATGCCCTCCCTTCAGGACCTCGATACAATGGTCAAGGAACAGAAGGGTAAAGGGCCTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR CAA 90 bp | GTATCTGCAGGCGTGTGTTCTAGTCTCTCATTCCCAGTGTCTCCTCCTTGGGTGACAATGCATGACTTCTaGGAGAAGAGTCTCGTGGCA | + |
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Preference number: 5 (lower is better) Translates to: VSAGVCSSLSFPVSPPWVTMHDF*EKSLVA Trigger: TGCCACGAGACTCTTCTCCAAGAAGTCATGCATTGT...CACCCAAGGAGGAGACACTGGGAATGAGAGACTAGAACACACGCCTGCAGATAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS TCA 90 bp | GGACATCCGCAGAATCCAGAGTATGTCAGCTGTGTAGCACTTCTTTaGGTACAAAGGCTGGTTTGGTCCTGGAATCTCCTCGGCCACATA | + |
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Preference number: 5 (lower is better) Translates to: GHPQNPEYVSCVALL*VQRLVWSWNLLGHI Trigger: TATGTGGCCGAGGAGATTCCAGGACCAAACCAGCCTTTGTACTCAAAGAAGTGCTACACAGCTGACATACTCTGGATTCTGCGGATGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS GCA 90 bp | GCCATCATTACCATTGATGTTGACCGTGTAAGCAAAACCAGGAGCTaGAAGGAGGCCAAGCAGACCCACGACGAACATTGTGAGCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: AIITIDVDRVSKTRS*KEAKQTHDEHCELH Trigger: ATGAAGCTCACAATGTTCGTCGTGGGTCTGCTTGGCCTCCTTGCAGCTCCTGGTTTTGCTTACACGGTCAACATCAATGGTAATGATGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS GCA 90 bp | GGTCCTGAAGGGAGGGCATGGCATCCTTGTTCATTCTGTGCACAATaGATGACTTCTTGGAGAAGAGTCTCGTGGCAGCGAAACTGTTTT | + |
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Preference number: 5 (lower is better) Translates to: GPEGRAWHPCSFCAQ*MTSWRRVSWQRNCF Trigger: AAAACAGTTTCGCTGCCACGAGACTCTTCTCCAAGAAGTCATGCATTGTGCACAGAATGAACAAGGATGCCATGCCCTCCCTTCAGGACC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS-3UTR CAA 90 bp | GACTCCCATAGAAGTCATGAGGCATGTCATTACAAACTGGATGTGCTGCCACGTAGTACAAAGGCTGGTTaGGTCCTGGAATCTCCTCGG | + |
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Preference number: 5 (lower is better) Translates to: DSHRSHEACHYKLDVLPRSTKAG*VLESPR Trigger: CCGAGGAGATTCCAGGACCAAACCAGCCTTTGTACT...ACGTGGCAGCACATCCAGTTTGTAATGACATGCCTCATGACTTCTATGGGAGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS TCA 90 bp | CTGAAGGGAGGGCATGGCATCCTTGTTCATTCTGTGCACAATGCATaGCTTCTTGGAGAAGAGTCTCGTGGCAGCGAAACTGTTTTCATA | + |
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Preference number: 5 (lower is better) Translates to: LKGGHGILVHSVHNA*LLGEESRGSETVFI Trigger: TATGAAAACAGTTTCGCTGCCACGAGACTCTTCTCCAAGAAGTCATGCATTGTGCACAGAATGAACAAGGATGCCATGCCCTCCCTTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CCA 90 bp | AGGGCATGGCATCCTTGTTCATTCTGTGCACAATGCATGACTTCTTaGAGAAGAGTCTCGTGGCAGCGAAACTGTTTTCATAGTCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: RAWHPCSFCAQCMTS*RRVSWQRNCFHSPR Trigger: TCTGGGACTATGAAAACAGTTTCGCTGCCACGAGACTCTTCTCCAAGAAGTCATGCATTGTGCACAGAATGAACAAGGATGCCATGCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CCA 90 bp | TGTTCATTCTGTGCACAATGCATGACTTCTTGGAGAAGAGTCTCGTaGCAGCGAAACTGTTTTCATAGTCCCAGAGGCTATTCCAGGAGT | + |
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Preference number: 5 (lower is better) Translates to: CSFCAQCMTSWRRVS*QRNCFHSPRGYSRS Trigger: ACTCCTGGAATAGCCTCTGGGACTATGAAAACAGTTTCGCTGCCACGAGACTCTTCTCCAAGAAGTCATGCATTGTGCACAGAATGAACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS TCA 72 bp | GAGGAGCTCCTCCAGGCCCTTTACCCTTCTGTTCCTTaGCCATTGTATCGAGGTCCTGAAGGGAGGGCATGG | + |
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Preference number: 6 (lower is better) Translates to: EELLQALYPSVP*PLYRGPEGRAW Trigger: CCATGCCCTCCCTTCAGGACCTCGATACAATGGTCAAGGAACAGAAGGGTAAAGGGCCTGGAGGAGCTCCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CAA 90 bp | TTCAGGTCCTCCACTCTGGTAGGGTTGACGGAGTACATCAAGTCCTaGGGAGGAGCTCCTCCAGGCCCTTTACCCTTCTGTTCCTTGACC | + |
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Preference number: 6 (lower is better) Translates to: FRSSTLVGLTEYIKS*GGAPPGPLPFCSLT Trigger: GGTCAAGGAACAGAAGGGTAAAGGGCCTGGAGGAGCTCCTCCCAAGGACTTGATGTACTCCGTCAACCCTACCAGAGTGGAGGACCTGAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CAA 72 bp | TCCACTCTGGTAGGGTTGACGGAGTACATCAAGTCCTaGGGAGGAGCTCCTCCAGGCCCTTTACCCTTCTGT | + |
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Preference number: 6 (lower is better) Translates to: STLVGLTEYIKS*GGAPPGPLPFC Trigger: ACAGAAGGGTAAAGGGCCTGGAGGAGCTCCTCCCAAGGACTTGATGTACTCCGTCAACCCTACCAGAGTGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CAA 90 bp | GCAATCTTTGGTCCGAATGTATTCAGGTCCTCCACTCTGGTAGGGTaGACGGAGTACATCAAGTCCTTGGGAGGAGCTCCTCCAGGCCCT | + |
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Preference number: 6 (lower is better) Translates to: AIFGPNVFRSSTLVG*TEYIKSLGGAPPGP Trigger: AGGGCCTGGAGGAGCTCCTCCCAAGGACTTGATGTACTCCGTCAACCCTACCAGAGTGGAGGACCTGAATACATTCGGACCAAAGATTGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CAA 90 bp | TCCCAGAGGCTATTCCAGGAGTCCCAGCCGTTATTGTTGTCGATATaGGCCACGTTGTGCACACCATTGATGCTCACCGACTGCTGTCCA | + |
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Preference number: 6 (lower is better) Translates to: SQRLFQESQPLLLSI*ATLCTPLMLTDCCP Trigger: TGGACAGCAGTCGGTGAGCATCAATGGTGTGCACAACGTGGCCAATATCGACAACAATAACGGCTGGGACTCCTGGAATAGCCTCTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS GCA 72 bp | GGGAGGGCATGGCATCCTTGTTCATTCTGTGCACAATaGATGACTTCTTGGAGAAGAGTCTCGTGGCAGCGA | + |
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Preference number: 6 (lower is better) Translates to: GRAWHPCSFCAQ*MTSWRRVSWQR Trigger: TCGCTGCCACGAGACTCTTCTCCAAGAAGTCATGCATTGTGCACAGAATGAACAAGGATGCCATGCCCTCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CCA 72 bp | ATAGGTAGGGATGCCCCTGCACATGCCAGCAATCTTTaGTCCGAATGTATTCAGGTCCTCCACTCTGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: IGRDAPAHASNL*SECIQVLHSGR Trigger: CCTACCAGAGTGGAGGACCTGAATACATTCGGACCAAAGATTGCTGGCATGTGCAGGGGCATCCCTACCTAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CAA 90 bp | CTATTCCAGGAGTCCCAGCCGTTATTGTTGTCGATATTGGCCACGTaGTGCACACCATTGATGCTCACCGACTGCTGTCCACTTCCGTCT | + |
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Preference number: 6 (lower is better) Translates to: LFQESQPLLLSILAT*CTPLMLTDCCPLPS Trigger: AGACGGAAGTGGACAGCAGTCGGTGAGCATCAATGGTGTGCACAACGTGGCCAATATCGACAACAATAACGGCTGGGACTCCTGGAATAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS GCA 72 bp | TTGGCCACGTTGTGCACACCATTGATGCTCACCGACTaGTGTCCACTTCCGTCTACATTGCCATCATTACCA | + |
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Preference number: 6 (lower is better) Translates to: LATLCTPLMLTD*CPLPSTLPSLP Trigger: TGGTAATGATGGCAATGTAGACGGAAGTGGACAGCAGTCGGTGAGCATCAATGGTGTGCACAACGTGGCCAA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CAA 72 bp | CTATTCCAGGAGTCCCAGCCGTTATTGTTGTCGATATaGGCCACGTTGTGCACACCATTGATGCTCACCGAC | + |
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Preference number: 6 (lower is better) Translates to: LFQESQPLLLSI*ATLCTPLMLTD Trigger: GTCGGTGAGCATCAATGGTGTGCACAACGTGGCCAATATCGACAACAATAACGGCTGGGACTCCTGGAATAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CAA 72 bp | TCCCAGAGGCTATTCCAGGAGTCCCAGCCGTTATTGTaGTCGATATTGGCCACGTTGTGCACACCATTGATG | + |
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Preference number: 6 (lower is better) Translates to: SQRLFQESQPLL*SILATLCTPLM Trigger: CATCAATGGTGTGCACAACGTGGCCAATATCGACAACAATAACGGCTGGGACTCCTGGAATAGCCTCTGGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CAA 90 bp | AGGACATCCGCAGAATCCAGAGTATGTCAGCTGTGTAGCACTTCTTaGAGTACAAAGGCTGGTTTGGTCCTGGAATCTCCTCGGCCACAT | + |
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Preference number: 6 (lower is better) Translates to: RTSAESRVCQLCSTS*STKAGLVLESPRPH Trigger: ATGTGGCCGAGGAGATTCCAGGACCAAACCAGCCTTTGTACTCAAAGAAGTGCTACACAGCTGACATACTCTGGATTCTGCGGATGTCCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS TCA 72 bp | GGGCATGGCATCCTTGTTCATTCTGTGCACAATGCATaGCTTCTTGGAGAAGAGTCTCGTGGCAGCGAAACT | + |
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Preference number: 6 (lower is better) Translates to: GHGILVHSVHNA*LLGEESRGSET Trigger: AGTTTCGCTGCCACGAGACTCTTCTCCAAGAAGTCATGCATTGTGCACAGAATGAACAAGGATGCCATGCCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS TCA 72 bp | TTACCCTTCTGTTCCTTGACCATTGTATCGAGGTCCTaGAGGGAGGGCATGGCATCCTTGTTCATTCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: LPFCSLTIVSRS*REGMASLFILC Trigger: GCACAGAATGAACAAGGATGCCATGCCCTCCCTTCAGGACCTCGATACAATGGTCAAGGAACAGAAGGGTAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS TCA 72 bp | TATTGTTGTCGATATTGGCCACGTTGTGCACACCATTaGTGCTCACCGACTGCTGTCCACTTCCGTCTACAT | + |
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Preference number: 6 (lower is better) Translates to: YCCRYWPRCAHH*CSPTAVHFRLH Trigger: ATGTAGACGGAAGTGGACAGCAGTCGGTGAGCATCAATGGTGTGCACAACGTGGCCAATATCGACAACAATA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CCA 72 bp | TGTGCACAATGCATGACTTCTTGGAGAAGAGTCTCGTaGCAGCGAAACTGTTTTCATAGTCCCAGAGGCTAT | + |
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Preference number: 6 (lower is better) Translates to: CAQCMTSWRRVS*QRNCFHSPRGY Trigger: ATAGCCTCTGGGACTATGAAAACAGTTTCGCTGCCACGAGACTCTTCTCCAAGAAGTCATGCATTGTGCACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CAA 72 bp | GCAGAATCCAGAGTATGTCAGCTGTGTAGCACTTCTTaGAGTACAAAGGCTGGTTTGGTCCTGGAATCTCCT | + |
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Preference number: 6 (lower is better) Translates to: AESRVCQLCSTS*STKAGLVLESP Trigger: AGGAGATTCCAGGACCAAACCAGCCTTTGTACTCAAAGAAGTGCTACACAGCTGACATACTCTGGATTCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CAA 72 bp | GCATCCTTGTTCATTCTGTGCACAATGCATGACTTCTaGGAGAAGAGTCTCGTGGCAGCGAAACTGTTTTCA | + |
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Preference number: 6 (lower is better) Translates to: ASLFILCTMHDF*EKSLVAAKLFS Trigger: TGAAAACAGTTTCGCTGCCACGAGACTCTTCTCCAAGAAGTCATGCATTGTGCACAGAATGAACAAGGATGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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| CDS CCA 72 bp | CATCCTTGTTCATTCTGTGCACAATGCATGACTTCTTaGAGAAGAGTCTCGTGGCAGCGAAACTGTTTTCAT | + |
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Preference number: 6 (lower is better) Translates to: HPCSFCAQCMTS*RRVSWQRNCFH Trigger: ATGAAAACAGTTTCGCTGCCACGAGACTCTTCTCCAAGAAGTCATGCATTGTGCACAGAATGAACAAGGATG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032129.3 |
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