Pregenerated sensors for GKAP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000021552Ensembl transcript IDs: ENSMUST00000091579.6, ENSMUST00000223811.2, ENSMUST00000224505.2, ENSMUST00000225034.2, ENSMUST00000225098.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ATATACACATTTCTGCAAAAGTGTGAAAGAATTCTGTGCTGGCCTCCGAGGCCATACTTTGCCTCCCACTaGGTGATCACAGCTTTGAGC | + |
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Preference number: 4 (lower is better) Translates to: IYTFLQKCERILCWPPRPYFASH*VITALS Trigger: GCTCAAAGCTGTGATCACTCAGTGGGAGGCAAAGTA...TGGCCTCGGAGGCCAGCACAGAATTCTTTCACACTTTTGCAGAAATGTGTATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR GCA 90 bp | GTTGCTTTTAGTTCCTTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTACGGAATCAGAGCCACTaGCGCTGTCCACTTGTAGCA | + |
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Preference number: 4 (lower is better) Translates to: VAFSSFNKNLQFSSRTALRNQSH*RCPLVA Trigger: TGCTACAAGTGGACAGCGGCAGTGGCTCTGATTCCG...TAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAAGGAACTAAAAGCAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR GCA 90 bp | AACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTGCAAAAGTGCCTACTTCCTGGTTGTaGTCTGGAGCGGGAGAGTTA | + |
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Preference number: 4 (lower is better) Translates to: NLQFSSRTALNIHISAKVPTSWL*SGAGEL Trigger: TAACTCTCCCGCTCCAGAGCACAACCAGGAAGTAGG...CACTTTTGCAGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR TCA 90 bp | GAACTAGTTGCTTTTAGTTCCTTCAACAAAAACCTGCAGTTTAGCAGTCGCACATCGTTCTTGATGCTCTaGGACTCATCCACTTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: ELVAFSSFNKNLQFSSRTSFLML*DSSTCR Trigger: TCTGCAAGTGGATGAGTCTCAGAGCATCAAGAACGA...TGTGCGACTGCTAAACTGCAGGTTTTTGTTGAAGGAACTAAAAGCAACTAGTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR CCA 90 bp | AACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTGCACCCTTCCTGCCTCCCTaGTATTTGGCTAATTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: NKNLQFSSRTALNIHISAPFLPP*YLANSA Trigger: GGCAGAATTAGCCAAATACCAGGGAGGCAGGAAGGG...TGCAGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR TCA 90 bp | TTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTCCAGTTTTCTTCCCGTaGCTCCTTCTGTGCTGGGTT | + |
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Preference number: 4 (lower is better) Translates to: FNKNLQFSSRTALNIHISPVFFP*LLLCWV Trigger: AACCCAGCACAGAAGGAGTCACGGGAAGAAAACTGG...AGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR TCA 90 bp | AACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTGCAAAAGTGCATCTTCCAGTCTATTaGAGAATCCCCCATCGTGTG | + |
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Preference number: 4 (lower is better) Translates to: NLQFSSRTALNIHISAKVHLPVY*RIPHRV Trigger: CACACGATGGGGGATTCTTCAATAGACTGGAAGATG...CACTTTTGCAGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR TCA 90 bp | AGTTCCTTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACTCGTTCTTGATGCTCTaGGACTCATCCACTTGCAGA | + |
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Preference number: 4 (lower is better) Translates to: SSFNKNLQFSSRTALNIHSFLML*DSSTCR Trigger: TCTGCAAGTGGATGAGTCTCAGAGCATCAAGAACGA...GTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAAGGAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR GCA 90 bp | AACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTGCATCCTTTTCCCCTTCCTaGCTCCCTGGTATTTGGCTA | + |
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Preference number: 4 (lower is better) Translates to: NKNLQFSSRTALNIHISASFSPS*LPGIWL Trigger: TAGCCAAATACCAGGGAGGCAGGAAGGGGAAAAGGA...TGCAGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR CCA 90 bp | TTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTCCCTTCCTGCCTCCCTaGTATTTGGCTAATTCTGCC | + |
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Preference number: 4 (lower is better) Translates to: FNKNLQFSSRTALNIHISPFLPP*YLANSA Trigger: GGCAGAATTAGCCAAATACCAGGGAGGCAGGAAGGG...AGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR TCA 90 bp | GAACTAGTTGCTTTTAGTTCCTTCAACAAAAACCTGCAGTTTAGCAGTCGCACAACCTTTTGTCTGAGTTaGAGCAGTCTCAGCATTTTC | + |
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Preference number: 4 (lower is better) Translates to: ELVAFSSFNKNLQFSSRTTFCLS*SSLSIF Trigger: GAAAATGCTGAGACTGCTTCAACTCAGACAAAAGGT...TGTGCGACTGCTAAACTGCAGGTTTTTGTTGAAGGAACTAAAAGCAACTAGTTC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR TCA 90 bp | GTTGCTTTTAGTTCCTTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAACAGCTTTGAGCTTCTaGATTTCTGCGTCTTTCCTT | + |
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Preference number: 4 (lower is better) Translates to: VAFSSFNKNLQFSSRTALTALSF*ISASFL Trigger: AAGGAAAGACGCAGAAATTCAGAAGCTCAAAGCTGT...TAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAAGGAACTAAAAGCAAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR TCA 90 bp | AACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTGCAAAAGTGTCGTGTGATAAAGTCTaGGCAGAATTCGATTCCTCT | + |
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Preference number: 4 (lower is better) Translates to: NLQFSSRTALNIHISAKVSCDKV*AEFDSS Trigger: AGAGGAATCGAATTCTGCTCAGACTTTATCACACGA...CACTTTTGCAGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR GCA 90 bp | AGTTCCTTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACTTATCTGTTCCGTTGTaGTCTGTGAGTTGTTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: SSFNKNLQFSSRTALNIHLSVPL*SVSCSL Trigger: GAGAGAACAACTCACAGAGCACAACGGAACAGATAA...GTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAAGGAACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR CCA 90 bp | AGTTCCTTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACGTTGAACATTGCAAATaGAATGGGAGGATTTCTGGG | + |
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Preference number: 4 (lower is better) Translates to: SSFNKNLQFSSRTALNIHVEHCK*NGRISG Trigger: CCCAGAAATCCTCCCATTCCATTTGCAATGTTCAAC...GTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAAGGAACT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR TCA 90 bp | TTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTTGCTGGGTTTGGCGATaGAAGCTCATGTTGAACATT | + |
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Preference number: 4 (lower is better) Translates to: FNKNLQFSSRTALNIHISCWVWR*KLMLNI Trigger: AATGTTCAACATGAGCTTTCATCGCCAAACCCAGCA...AGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR CCA 90 bp | AAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTGCAAAAGGTTTGTCCTTGCCCTaGTGGTTCTTCCTTTTATCT | + |
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Preference number: 4 (lower is better) Translates to: KNLQFSSRTALNIHISAKGLSLP*WFFLLS Trigger: AGATAAAAGGAAGAACCACCAGGGCAAGGACAAACC...TTTTGCAGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR GCA 90 bp | TTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTTACTTCTTTATACTTTaGCTGGTTGTGCTCTGGAGC | + |
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Preference number: 4 (lower is better) Translates to: FNKNLQFSSRTALNIHISYFFIL*LVVLWS Trigger: GCTCCAGAGCACAACCAGGCAAAGTATAAAGAAGTA...AGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000225098.2 |
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| CDS-3UTR GCA 90 bp | AAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTGCAAAATACTTCTTTATACTTTaGCTCCCACTGAGTGATCAC | + |
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Preference number: 4 (lower is better) Translates to: KNLQFSSRTALNIHISAKYFFIL*LPLSDH Trigger: GTGATCACTCAGTGGGAGGCAAAGTATAAAGAAGTA...TTTTGCAGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR CCA 90 bp | TTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTACATTGCAAATGGAATaGGAGGATTTCTGGGGAATT | + |
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Preference number: 4 (lower is better) Translates to: FNKNLQFSSRTALNIHISTLQME*EDFWGI Trigger: AATTCCCCAGAAATCCTCCCATTCCATTTGCAATGT...AGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAA 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS GCA 90 bp | TTGCTTTGTTTCCCAGAGTTTGAGACTTCCCATTACTCCGGCCTTTaGCTTTCCCAGGCTCGGAATCAGAGCCACTGCCGCTGTCCACTT | + |
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Preference number: 5 (lower is better) Translates to: LLCFPEFETSHYSGL*LSQARNQSHCRCPL Trigger: AAGTGGACAGCGGCAGTGGCTCTGATTCCGAGCCTGGGAAAGGCAAAGGCCGGAGTAATGGGAAGTCTCAAACTCTGGGAAACAAAGCAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000091579.6 ENSMUST00000223811.2 ENSMUST00000224505.2 ENSMUST00000225034.2 |
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| CDS TCA 90 bp | CCAGTGCGGCATGAAGTGAAGACACCTGGACCGTCAGCTCGTTCTTaGTGCTCTGAGACTCATCCACTTGCAGAAGTATCTCGGCCTTAT | + |
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Preference number: 5 (lower is better) Translates to: PVRHEVKTPGPSARS*CSETHPLAEVSRPY Trigger: ATAAGGCCGAGATACTTCTGCAAGTGGATGAGTCTCAGAGCATCAAGAACGAGCTGACGGTCCAGGTGTCTTCACTTCATGCCGCACTGG 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR CAA 90 bp | GTTGCTTTTAGTTCCTTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTATTTGTTTCCCAGAGTTaGAGACTTCCCATTACTCCG | + |
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Preference number: 5 (lower is better) Translates to: VAFSSFNKNLQFSSRTALFVSQS*RLPITP Trigger: CGGAGTAATGGGAAGTCTCAAACTCTGGGAAACAAA...TAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAAGGAACTAAAAGCAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR CAA 90 bp | GTTGCTTTTAGTTCCTTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTACACTTTAGATCTTTCTaGTTCCAGTGCGGCATGAAG | + |
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Preference number: 5 (lower is better) Translates to: VAFSSFNKNLQFSSRTALHFRSF*FQCGMK Trigger: CTTCATGCCGCACTGGAACAAGAAAGATCTAAAGTG...TAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAAGGAACTAAAAGCAAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR CAA 90 bp | AACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTGCAAAAGTGTCATCTTCCAGTCTATaGAAGAATCCCCCATCGTGT | + |
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Preference number: 5 (lower is better) Translates to: NLQFSSRTALNIHISAKVSSSSL*KNPPSC Trigger: ACACGATGGGGGATTCTTCAATAGACTGGAAGATGA...CACTTTTGCAGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR CAA 90 bp | AGTTCCTTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACTCATCTTCCAGTCTATaGAAGAATCCCCCATCGTGT | + |
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Preference number: 5 (lower is better) Translates to: SSFNKNLQFSSRTALNIHSSSSL*KNPPSC Trigger: ACACGATGGGGGATTCTTCAATAGACTGGAAGATGA...GTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAAGGAACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR CAA 90 bp | AGTTCCTTCAACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACCACTTTAGATCTTTCTaGTTCCAGTGCGGCATGAAG | + |
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Preference number: 5 (lower is better) Translates to: SSFNKNLQFSSRTALNIHHFRSF*FQCGMK Trigger: CTTCATGCCGCACTGGAACAAGAAAGATCTAAAGTG...GTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTTGAAGGAACT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS-3UTR CAA 90 bp | AAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTGCAAAACCCGTTTCTTCTCATTaGAGGTTGCTTTGTTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: KNLQFSSRTALNIHISAKPVSSH*RLLCFP Trigger: TGGGAAACAAAGCAACCTCAAATGAGAAGAAACGGG...TTTTGCAGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS-3UTR CAA 90 bp | AACAAAAACCTGCAGTTTAGCAGTCGCACAGCATTAAATATACACATTTCTGCATTCTGGGGAATTTTCTaGAAAGCAAGATTCCTGAGC | + |
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Preference number: 5 (lower is better) Translates to: NKNLQFSSRTALNIHISAFWGIF*KARFLS Trigger: GCTCAGGAATCTTGCTTTCAAGAAAATTCCCCAGAA...TGCAGAAATGTGTATATTTAATGCTGTGCGACTGCTAAACTGCAGGTTTTTGTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS GCA 72 bp | TTCCCAGAGTTTGAGACTTCCCATTACTCCGGCCTTTaGCTTTCCCAGGCTCGGAATCAGAGCCACTGCCGC | + |
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Preference number: 6 (lower is better) Translates to: FPEFETSHYSGL*LSQARNQSHCR Trigger: GCGGCAGTGGCTCTGATTCCGAGCCTGGGAAAGGCAAAGGCCGGAGTAATGGGAAGTCTCAAACTCTGGGAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000091579.6 ENSMUST00000223811.2 ENSMUST00000224505.2 ENSMUST00000225034.2 |
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| CDS CAA 90 bp | CACCTGGACCGTCAGCTCGTTCTTGATGCTCTGAGACTCATCCACTaGCAGAAGTATCTCGGCCTTATCTTTCATCTCTCCCTCCTGAAG | + |
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Preference number: 6 (lower is better) Translates to: HLDRQLVLDALRLIH*QKYLGLIFHLSLLK Trigger: CTTCAGGAGGGAGAGATGAAAGATAAGGCCGAGATACTTCTGCAAGTGGATGAGTCTCAGAGCATCAAGAACGAGCTGACGGTCCAGGTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS TCA 72 bp | GAAGACACCTGGACCGTCAGCTCGTTCTTGATGCTCTaGGACTCATCCACTTGCAGAAGTATCTCGGCCTTA | + |
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Preference number: 6 (lower is better) Translates to: EDTWTVSSFLML*DSSTCRSISAL Trigger: TAAGGCCGAGATACTTCTGCAAGTGGATGAGTCTCAGAGCATCAAGAACGAGCTGACGGTCCAGGTGTCTTC 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS CAA 90 bp | TCCACTCTTGCCAGTTTTCTTCCCGTGACTCCTTCTGTGCTGGGTTaGGCGATGAAAGCTCATGTTGAACATTGCAAATGGAATGGGAGG | + |
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Preference number: 6 (lower is better) Translates to: STLASFLPVTPSVLG*AMKAHVEHCKWNGR Trigger: CCTCCCATTCCATTTGCAATGTTCAACATGAGCTTTCATCGCCAAACCCAGCACAGAAGGAGTCACGGGAAGAAAACTGGCAAGAGTGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000091579.6 |
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| CDS TCA 72 bp | CATGAAGTGAAGACACCTGGACCGTCAGCTCGTTCTTaGTGCTCTGAGACTCATCCACTTGCAGAAGTATCT | + |
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Preference number: 6 (lower is better) Translates to: HEVKTPGPSARS*CSETHPLAEVS Trigger: AGATACTTCTGCAAGTGGATGAGTCTCAGAGCATCAAGAACGAGCTGACGGTCCAGGTGTCTTCACTTCATG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS TCA 72 bp | CACTTTAGATCTTTCTTGTTCCAGTGCGGCATGAAGTaGAGACACCTGGACCGTCAGCTCGTTCTTGATGCT | + |
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Preference number: 6 (lower is better) Translates to: HFRSFLFQCGMK*RHLDRQLVLDA Trigger: AGCATCAAGAACGAGCTGACGGTCCAGGTGTCTTCACTTCATGCCGCACTGGAACAAGAAAGATCTAAAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS CAA 72 bp | CGTCAGCTCGTTCTTGATGCTCTGAGACTCATCCACTaGCAGAAGTATCTCGGCCTTATCTTTCATCTCTCC | + |
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Preference number: 6 (lower is better) Translates to: RQLVLDALRLIH*QKYLGLIFHLS Trigger: GGAGAGATGAAAGATAAGGCCGAGATACTTCTGCAAGTGGATGAGTCTCAGAGCATCAAGAACGAGCTGACG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS TCA 72 bp | ACTTTCACTTTAGATCTTTCTTGTTCCAGTGCGGCATaGAGTGAAGACACCTGGACCGTCAGCTCGTTCTTG | + |
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Preference number: 6 (lower is better) Translates to: TFTLDLSCSSAA*SEDTWTVSSFL Trigger: CAAGAACGAGCTGACGGTCCAGGTGTCTTCACTTCATGCCGCACTGGAACAAGAAAGATCTAAAGTGAAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000091579.6 ENSMUST00000225098.2 |
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| CDS TCA 72 bp | TTCTTCTCATTTGAGGTTGCTTTGTTTCCCAGAGTTTaGGACTTCCCATTACTCCGGCCTTTGCCTTTCCCA | + |
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Preference number: 6 (lower is better) Translates to: FFSFEVALFPRV*DFPLLRPLPFP Trigger: TGGGAAAGGCAAAGGCCGGAGTAATGGGAAGTCTCAAACTCTGGGAAACAAAGCAACCTCAAATGAGAAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000091579.6 ENSMUST00000223811.2 ENSMUST00000224505.2 ENSMUST00000225034.2 |
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| CDS CCA 72 bp | TGCTTTTACTTCTTTATACTTTGCCTGGTTGTGCTCTaGAGCGGGAGAGTTATCTGTTCCGTTGTGCTCTGT | + |
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Preference number: 6 (lower is better) Translates to: CFYFFILCLVVL*SGRVICSVVLC Trigger: ACAGAGCACAACGGAACAGATAACTCTCCCGCTCCAGAGCACAACCAGGCAAAGTATAAAGAAGTAAAAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000225098.2 |
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