RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000025059

Ensembl transcript IDs: ENSMUST00000026039.15, ENSMUST00000113978.9, ENSMUST00000142152.2, ENSMUST00000156390.8

Found 61 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TTTGATGGTCTGTGCATGGTGGCATATGTCTTTATTCCCAGCAGTTaGAAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGCCAGC +
Preference number: 1 (lower is better)
Translates to: FDGLCMVAYVFIPSS*KRQRQADLYEFKAS
Trigger: GCTGGCCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCACAGACCATCAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR TCA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCACAGCTAGACAGAAGCTaGGGTAAAGGATGGAACCCC +
Preference number: 2 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQAQLDRS*GKGWNP
Trigger: GGGGTTCCATCCTTTACCTCAGCTTCTGTCTAGCTG...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR GCA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAATTGGGAGCAGCACATaGAGAGGGGAAGGACAATCT +
Preference number: 2 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQAIGSST*RGEGQS
Trigger: AGATTGTCCTTCCCCTCTGCATGTGCTGCTCCCAAT...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR TCA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAGCTCGTCAGTGCATGTaGACAAGTACTGAAAAGTGG +
Preference number: 2 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQAARQCM*TSTEKW
Trigger: CCACTTTTCAGTACTTGTTCACATGCACTGACGAGC...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR TCA 90 bp AAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGCCAGCTTGGTATACAGACAGCTAGACAGAAGCTaGGGTAAAGGATGGAACCCC +
Preference number: 2 (lower is better)
Translates to: KRQRQADLYEFKASLVYRQLDRS*GKGWNP
Trigger: GGGGTTCCATCCTTTACCTCAGCTTCTGTCTAGCTG...TCTGTATACCAAGCTGGCCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CCA 90 bp TTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGAGCAGCTTCAGTCATTaGGAGCAGCACATGCAGAGG +
Preference number: 2 (lower is better)
Translates to: LFPAVGRDRGRQISMNSRSSFSH*EQHMQR
Trigger: CCTCTGCATGTGCTGCTCCCAATGACTGAAGCTGCT...CCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CCA 90 bp AAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGCCAGCTTGGTATACAGAAGCAGCTTCAGTCATTaGGAGCAGCACATGCAGAGG +
Preference number: 2 (lower is better)
Translates to: KRQRQADLYEFKASLVYRSSFSH*EQHMQR
Trigger: CCTCTGCATGTGCTGCTCCCAATGACTGAAGCTGCT...TCTGTATACCAAGCTGGCCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTT
49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR GCA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCACTGCTTAGAGGATCATaGAGCCAGTGGCTTATGAAA +
Preference number: 2 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQALLRGS*SQWLMK
Trigger: TTTCATAAGCCACTGGCTGCATGATCCTCTAAGCAG...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR TCA 90 bp TTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGGCTCGTCAGTGCATGTaGACAAGTACTGAAAAGTGG +
Preference number: 2 (lower is better)
Translates to: LFPAVGRDRGRQISMNSRARQCM*TSTEKW
Trigger: CCACTTTTCAGTACTTGTTCACATGCACTGACGAGC...CCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CCA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAAAAAAGCTTGCATCTTaGAAATCCGTGAGGTGGTAT +
Preference number: 2 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQAKKLAS*KSVRWY
Trigger: ATACCACCTCACGGATTTCCAAGATGCAAGCTTTTT...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
46% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CCA 90 bp AAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGCCAGCTTGGTATACAGAAAAAAGCTTGCATCTTaGAAATCCGTGAGGTGGTAT +
Preference number: 2 (lower is better)
Translates to: KRQRQADLYEFKASLVYRKKLAS*KSVRWY
Trigger: ATACCACCTCACGGATTTCCAAGATGCAAGCTTTTT...TCTGTATACCAAGCTGGCCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR GCA 90 bp TTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGGTATTTACTGTTACATaGCACAGTTGCTTTTCTTCC +
Preference number: 2 (lower is better)
Translates to: LFPAVGRDRGRQISMNSRVFTVT*HSCFSS
Trigger: GGAAGAAAAGCAACTGTGGCATGTAACAGTAAATAC...CCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR GCA 90 bp ACAACCTCTTCCTCAAACATGTGTAATCCACTAGCATCTGAATATACTGAATGGCTGCTTAGAGGATCATaGAGCCAGTGGCTTATGAAA +
Preference number: 2 (lower is better)
Translates to: TTSSSNMCNPLASEYTEWLLRGS*SQWLMK
Trigger: TTTCATAAGCCACTGGCTGCATGATCCTCTAAGCAG...CCATTCAGTATATTCAGATGCTAGTGGATTACACATGTTTGAGGAAGAGGTTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR GCA 90 bp AAAGTGGCTTTTGTGTGTGCTGAAACATCTCTGATAACTAAACTTTCATCTGGACTGCTTAGAGGATCATaGAGCCAGTGGCTTATGAAA +
Preference number: 2 (lower is better)
Translates to: KVAFVCAETSLITKLSSGLLRGS*SQWLMK
Trigger: TTTCATAAGCCACTGGCTGCATGATCCTCTAAGCAG...TCCAGATGAAAGTTTAGTTATCAGAGATGTTTCAGCACACACAAAAGCCACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR GCA 90 bp AGAATCATGTTTGAGAAGAGTATTTACTGTTACATGCCACAGTTGCTTTTCTTCCTGCTTAGAGGATCATaGAGCCAGTGGCTTATGAAA +
Preference number: 2 (lower is better)
Translates to: RIMFEKSIYCYMPQLLFFLLRGS*SQWLMK
Trigger: TTTCATAAGCCACTGGCTGCATGATCCTCTAAGCAG...GAAGAAAAGCAACTGTGGCATGTAACAGTAAATACTCTTCTCAAACATGATTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR GCA 90 bp AAAGTGGCTTTTGTGTGTGCTGAAACATCTCTGATAACTAAACTTTCATCTGGACTGGAGGATTCTTTCTaGTGCACTTTCTTTATTTCA +
Preference number: 2 (lower is better)
Translates to: KVAFVCAETSLITKLSSGLEDSF*CTFFIS
Trigger: TGAAATAAAGAAAGTGCAGCAGAAAGAATCCTCCAG...TCCAGATGAAAGTTTAGTTATCAGAGATGTTTCAGCACACACAAAAGCCACTTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CCA 90 bp AGAATCATGTTTGAGAAGAGTATTTACTGTTACATGCCACAGTTGCTTTTCTTCAAAAAGCTTGCATCTTaGAAATCCGTGAGGTGGTAT +
Preference number: 2 (lower is better)
Translates to: RIMFEKSIYCYMPQLLFFKKLAS*KSVRWY
Trigger: ATACCACCTCACGGATTTCCAAGATGCAAGCTTTTT...GAAGAAAAGCAACTGTGGCATGTAACAGTAAATACTCTTCTCAAACATGATTCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR CCA 72 bp GCAGCTGTATCAGTGACACCGAGCAGCTTCAGTCATTaGGAGCAGCACATGCAGAGGGGAAGGACAATCTAC +
Preference number: 3 (lower is better)
Translates to: AAVSVTPSSFSH*EQHMQRGRTIY
Trigger: GTAGATTGTCCTTCCCCTCTGCATGTGCTGCTCCCAATGACTGAAGCTGCTCGGTGTCACTGATACAGCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR TCA 72 bp TCTATATTGATGTCACGTAAGTGGCAGCTGTATCAGTaGCACCGAGCAGCTTCAGTCATTGGGAGCAGCACA +
Preference number: 3 (lower is better)
Translates to: SILMSRKWQLYQ*HRAASVIGSST
Trigger: TGTGCTGCTCCCAATGACTGAAGCTGCTCGGTGTCACTGATACAGCTGCCACTTACGTGACATCAATATAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCACAGGATCTTTCTATATaGATGTCACGTAAGTGGCAG +
Preference number: 3 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQAQDLSI*MSRKWQ
Trigger: CTGCCACTTACGTGACATCAATATAGAAAGATCCTG...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAACTGAAAAGTGGCTTTaGTGTGTGCTGAAACATCTC +
Preference number: 3 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQATEKWL*CVLKHL
Trigger: GAGATGTTTCAGCACACACAAAAGCCACTTTTCAGT...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAAAGAAGCCACTCATTTaGAACAGGTTAGTAACAACC +
Preference number: 3 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQAKKPLI*NRLVTT
Trigger: GGTTGTTACTAACCTGTTCAAAATGAGTGGCTTCTT...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAAAACACCTGACAAGGTaGAATTTTGGCAAACACTGT +
Preference number: 3 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQAKHLTR*NFGKHC
Trigger: ACAGTGTTTGCCAAAATTCAACCTTGTCAGGTGTTT...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp AAAGTGGCTTTTGTGTGTGCTGAAACATCTCTGATAACTAAACTTTCATCTGGAGAGCAGCTTCAGTCATaGGGAGCAGCACATGCAGAG +
Preference number: 3 (lower is better)
Translates to: KVAFVCAETSLITKLSSGEQLQS*GAAHAE
Trigger: CTCTGCATGTGCTGCTCCCAATGACTGAAGCTGCTC...TCCAGATGAAAGTTTAGTTATCAGAGATGTTTCAGCACACACAAAAGCCACTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp AAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGCCAGCTTGGTATACAGACAGGATCTTTCTATATaGATGTCACGTAAGTGGCAG +
Preference number: 3 (lower is better)
Translates to: KRQRQADLYEFKASLVYRQDLSI*MSRKWQ
Trigger: CTGCCACTTACGTGACATCAATATAGAAAGATCCTG...TCTGTATACCAAGCTGGCCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp TTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGAAGAAGCCACTCATTTaGAACAGGTTAGTAACAACC +
Preference number: 3 (lower is better)
Translates to: LFPAVGRDRGRQISMNSRKKPLI*NRLVTT
Trigger: GGTTGTTACTAACCTGTTCAAAATGAGTGGCTTCTT...CCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR TCA 72 bp CTGCTAATTAGCTCGTCAGTGCATGTGAACAAGTACTaGAAAGTGGCTTTTGTGTGTGCTGAAACATCTCTG +
Preference number: 3 (lower is better)
Translates to: LLISSSVHVNKY*KVAFVCAETSL
Trigger: CAGAGATGTTTCAGCACACACAAAAGCCACTTTTCAGTACTTGTTCACATGCACTGACGAGCTAATTAGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp AAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGCCAGCTTGGTATACAGAAAAAATGTATACAGCTaGCCCTCCCCCAATTTATAT +
Preference number: 3 (lower is better)
Translates to: KRQRQADLYEFKASLVYRKNVYS*PSPNLY
Trigger: ATATAAATTGGGGGAGGGCAAGCTGTATACATTTTT...TCTGTATACCAAGCTGGCCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTT
42% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp TTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGAAAAATGTATACAGCTaGCCCTCCCCCAATTTATAT +
Preference number: 3 (lower is better)
Translates to: LFPAVGRDRGRQISMNSRKNVYS*PSPNLY
Trigger: ATATAAATTGGGGGAGGGCAAGCTGTATACATTTTT...CCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp AAAGTGGCTTTTGTGTGTGCTGAAACATCTCTGATAACTAAACTTTCATCTGGATGTTACATGCCACAGTaGCTTTTCTTCCAGCTGAGA +
Preference number: 3 (lower is better)
Translates to: KVAFVCAETSLITKLSSGCYMPQ*LFFQLR
Trigger: TCTCAGCTGGAAGAAAAGCAACTGTGGCATGTAACA...TCCAGATGAAAGTTTAGTTATCAGAGATGTTTCAGCACACACAAAAGCCACTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp AAAGTGGCTTTTGTGTGTGCTGAAACATCTCTGATAACTAAACTTTCATCTGGAAAACACCTGACAAGGTaGAATTTTGGCAAACACTGT +
Preference number: 3 (lower is better)
Translates to: KVAFVCAETSLITKLSSGKHLTR*NFGKHC
Trigger: ACAGTGTTTGCCAAAATTCAACCTTGTCAGGTGTTT...TCCAGATGAAAGTTTAGTTATCAGAGATGTTTCAGCACACACAAAAGCCACTTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp TATTTACTGTTACATGCCACAGTTGCTTTTCTTCCAGCTGAGATAATTAAATGGAAACACCTGACAAGGTaGAATTTTGGCAAACACTGT +
Preference number: 3 (lower is better)
Translates to: YLLLHATVAFLPAEIIKWKHLTR*NFGKHC
Trigger: ACAGTGTTTGCCAAAATTCAACCTTGTCAGGTGTTT...CCATTTAATTATCTCAGCTGGAAGAAAAGCAACTGTGGCATGTAACAGTAAATA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR-3UTR CAA 90 bp AGAATCATGTTTGAGAAGAGTATTTACTGTTACATGCCACAGTTGCTTTTCTTCAAAAATGTATACAGCTaGCCCTCCCCCAATTTATAT +
Preference number: 3 (lower is better)
Translates to: RIMFEKSIYCYMPQLLFFKNVYS*PSPNLY
Trigger: ATATAAATTGGGGGAGGGCAAGCTGTATACATTTTT...GAAGAAAAGCAACTGTGGCATGTAACAGTAAATACTCTTCTCAAACATGATTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR TCA 90 bp AAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGCCAGCTTGGTATACAGAACCAGCAGCTGGAACTaGAGAGCCAGAGGGGACAAC +
Preference number: 4 (lower is better)
Translates to: KRQRQADLYEFKASLVYRTSSWN*RARGDN
Trigger: GTTGTCCCCTCTGGCTCTTCAGTTCCAGCTGCTGGT...TCTGTATACCAAGCTGGCCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142152.2
CDS-3UTR CCA 90 bp AAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGCCAGCTTGGTATACAGAGTCGAGCTGGTACCCTaGTCCACTGCTCCCACCAAT +
Preference number: 4 (lower is better)
Translates to: KRQRQADLYEFKASLVYRVELVP*STAPTN
Trigger: ATTGGTGGGAGCAGTGGACCAGGGTACCAGCTCGAC...TCTGTATACCAAGCTGGCCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR GCA 90 bp AAGACATCTGAGCTGTTAAAAGCAAACAAGCAAGAAGCCACTCATTTTGAACAGCACACCAACCCCCTCTaGAGCCCCAGCTGCCATGGC +
Preference number: 4 (lower is better)
Translates to: KTSELLKANKQEATHFEQHTNPL*SPSCHG
Trigger: GCCATGGCAGCTGGGGCTGCAGAGGGGGTTGGTGTG...CTGTTCAAAATGAGTGGCTTCTTGCTTGTTTGCTTTTAACAGCTCAGATGTCTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR GCA 90 bp ACAACCTCTTCCTCAAACATGTGTAATCCACTAGCATCTGAATATACTGAATGGCACACCAACCCCCTCTaGAGCCCCAGCTGCCATGGC +
Preference number: 4 (lower is better)
Translates to: TTSSSNMCNPLASEYTEWHTNPL*SPSCHG
Trigger: GCCATGGCAGCTGGGGCTGCAGAGGGGGTTGGTGTG...CCATTCAGTATATTCAGATGCTAGTGGATTACACATGTTTGAGGAAGAGGTTGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
3UTR CAA 72 bp CAGAGGCAGGCAGATCTCTATGAATTCAAGGCCAGCTaGGTATACAGAGTGAGTTGTAGGACAGTCAGGCCT +
Preference number: 4 (lower is better)
Translates to: QRQADLYEFKAS*VYRVSCRTVRP
Trigger: AGGCCTGACTGTCCTACAACTCACTCTGTATACCAAGCTGGCCTTGAATTCATAGAGATCTGCCTGCCTCTG
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CCA 90 bp AAGACATCTGAGCTGTTAAAAGCAAACAAGCAAGAAGCCACTCATTTTGAACAGCAGCCCCAGCTGCCATaGCAGCGCCTAGTGCAGTTG +
Preference number: 4 (lower is better)
Translates to: KTSELLKANKQEATHFEQQPQLP*QRLVQL
Trigger: CAACTGCACTAGGCGCTGCCATGGCAGCTGGGGCTG...CTGTTCAAAATGAGTGGCTTCTTGCTTGTTTGCTTTTAACAGCTCAGATGTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR GCA 90 bp TATTTACTGTTACATGCCACAGTTGCTTTTCTTCCAGCTGAGATAATTAAATGGCACACCAACCCCCTCTaGAGCCCCAGCTGCCATGGC +
Preference number: 4 (lower is better)
Translates to: YLLLHATVAFLPAEIIKWHTNPL*SPSCHG
Trigger: GCCATGGCAGCTGGGGCTGCAGAGGGGGTTGGTGTG...CCATTTAATTATCTCAGCTGGAAGAAAAGCAACTGTGGCATGTAACAGTAAATA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CCA 90 bp AAAGTGGCTTTTGTGTGTGCTGAAACATCTCTGATAACTAAACTTTCATCTGGACAGCCCCAGCTGCCATaGCAGCGCCTAGTGCAGTTG +
Preference number: 4 (lower is better)
Translates to: KVAFVCAETSLITKLSSGQPQLP*QRLVQL
Trigger: CAACTGCACTAGGCGCTGCCATGGCAGCTGGGGCTG...TCCAGATGAAAGTTTAGTTATCAGAGATGTTTCAGCACACACAAAAGCCACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CCA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCATCTTCAACAGCCTCTTaGACCTTTTTCACGTTGTCA +
Preference number: 4 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQASSTAS*TFFTLS
Trigger: TGACAACGTGAAAAAGGTCCAAGAGGCTGTTGAAGA...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CCA 90 bp TATTTACTGTTACATGCCACAGTTGCTTTTCTTCCAGCTGAGATAATTAAATGGCAGCCCCAGCTGCCATaGCAGCGCCTAGTGCAGTTG +
Preference number: 4 (lower is better)
Translates to: YLLLHATVAFLPAEIIKWQPQLP*QRLVQL
Trigger: CAACTGCACTAGGCGCTGCCATGGCAGCTGGGGCTG...CCATTTAATTATCTCAGCTGGAAGAAAAGCAACTGTGGCATGTAACAGTAAATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR TCA 90 bp AAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGCCAGCTTGGTATACAGACCAGCTTTCAGGCTATaGGAGATTTTCATTAGGCCA +
Preference number: 4 (lower is better)
Translates to: KRQRQADLYEFKASLVYRPAFRL*EIFIRP
Trigger: TGGCCTAATGAAAATCTCTCATAGCCTGAAAGCTGG...TCTGTATACCAAGCTGGCCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113978.9
CDS-3UTR CCA 90 bp AAAGTGGCTTTTGTGTGTGCTGAAACATCTCTGATAACTAAACTTTCATCTGGAGTCGAGCTGGTACCCTaGTCCACTGCTCCCACCAAT +
Preference number: 4 (lower is better)
Translates to: KVAFVCAETSLITKLSSGVELVP*STAPTN
Trigger: ATTGGTGGGAGCAGTGGACCAGGGTACCAGCTCGAC...TCCAGATGAAAGTTTAGTTATCAGAGATGTTTCAGCACACACAAAAGCCACTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CCA 90 bp TTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGTTCTCAACAGTAGACTaGGTTCTTAGGTCAAGCCAC +
Preference number: 4 (lower is better)
Translates to: LFPAVGRDRGRQISMNSRFSTVD*VLRSSH
Trigger: GTGGCTTGACCTAAGAACCCAGTCTACTGTTGAGAA...CCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CCA 90 bp AGAATCATGTTTGAGAAGAGTATTTACTGTTACATGCCACAGTTGCTTTTCTTCGTCGAGCTGGTACCCTaGTCCACTGCTCCCACCAAT +
Preference number: 4 (lower is better)
Translates to: RIMFEKSIYCYMPQLLFFVELVP*STAPTN
Trigger: ATTGGTGGGAGCAGTGGACCAGGGTACCAGCTCGAC...GAAGAAAAGCAACTGTGGCATGTAACAGTAAATACTCTTCTCAAACATGATTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CCA 90 bp TTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGTCTTCAACAGCCTCTTaGACCTTTTTCACGTTGTCA +
Preference number: 4 (lower is better)
Translates to: LFPAVGRDRGRQISMNSRSSTAS*TFFTLS
Trigger: TGACAACGTGAAAAAGGTCCAAGAGGCTGTTGAAGA...CCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CCA 90 bp AAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGCCAGCTTGGTATACAGATCTTCAACAGCCTCTTaGACCTTTTTCACGTTGTCA +
Preference number: 4 (lower is better)
Translates to: KRQRQADLYEFKASLVYRSSTAS*TFFTLS
Trigger: TGACAACGTGAAAAAGGTCCAAGAGGCTGTTGAAGA...TCTGTATACCAAGCTGGCCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CCA 90 bp AAAGTGGCTTTTGTGTGTGCTGAAACATCTCTGATAACTAAACTTTCATCTGGAAGAGCCAGGAGAAACTaGAGCAGCCACGGCATTATA +
Preference number: 4 (lower is better)
Translates to: KVAFVCAETSLITKLSSGRARRN*SSHGII
Trigger: TATAATGCCGTGGCTGCTCCAGTTTCTCCTGGCTCT...TCCAGATGAAAGTTTAGTTATCAGAGATGTTTCAGCACACACAAAAGCCACTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142152.2
CDS-3UTR CCA 90 bp AAGACATCTGAGCTGTTAAAAGCAAACAAGCAAGAAGCCACTCATTTTGAACAGTTCTCAACAGTAGACTaGGTTCTTAGGTCAAGCCAC +
Preference number: 4 (lower is better)
Translates to: KTSELLKANKQEATHFEQFSTVD*VLRSSH
Trigger: GTGGCTTGACCTAAGAACCCAGTCTACTGTTGAGAA...CTGTTCAAAATGAGTGGCTTCTTGCTTGTTTGCTTTTAACAGCTCAGATGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CCA 90 bp ACAACCTCTTCCTCAAACATGTGTAATCCACTAGCATCTGAATATACTGAATGGTCTTCAACAGCCTCTTaGACCTTTTTCACGTTGTCA +
Preference number: 4 (lower is better)
Translates to: TTSSSNMCNPLASEYTEWSSTAS*TFFTLS
Trigger: TGACAACGTGAAAAAGGTCCAAGAGGCTGTTGAAGA...CCATTCAGTATATTCAGATGCTAGTGGATTACACATGTTTGAGGAAGAGGTTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CAA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAGTTTATATGCTACGGTaGTCAGGAGGCCATGTTCAG +
Preference number: 5 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQAVYMLR*SGGHVQ
Trigger: CTGAACATGGCCTCCTGACAACCGTAGCATATAAAC...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CAA 90 bp TGCATGGTGGCATATGTCTTTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCATTCTTCAACAGCCTCTaGGACCTTTTTCACGTTGTC +
Preference number: 5 (lower is better)
Translates to: CMVAYVFIPSSWKRQRQAFFNSL*DLFHVV
Trigger: GACAACGTGAAAAAGGTCCAAGAGGCTGTTGAAGAA...TGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAAAGACATATGCCACCATGCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CAA 90 bp TTATTCCCAGCAGTTGGAAGAGACAGAGGCAGGCAGATCTCTATGAATTCAAGGTTCTTCAACAGCCTCTaGGACCTTTTTCACGTTGTC +
Preference number: 5 (lower is better)
Translates to: LFPAVGRDRGRQISMNSRFFNSL*DLFHVV
Trigger: GACAACGTGAAAAAGGTCCAAGAGGCTGTTGAAGAA...CCTTGAATTCATAGAGATCTGCCTGCCTCTGTCTCTTCCAACTGCTGGGAATAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CAA 90 bp AAGACATCTGAGCTGTTAAAAGCAAACAAGCAAGAAGCCACTCATTTTGAACAGCAGCGCCTAGTGCAGTaGTTTCAGGCATGGAGGGTT +
Preference number: 5 (lower is better)
Translates to: KTSELLKANKQEATHFEQQRLVQ*FQAWRV
Trigger: AACCCTCCATGCCTGAAACAACTGCACTAGGCGCTG...CTGTTCAAAATGAGTGGCTTCTTGCTTGTTTGCTTTTAACAGCTCAGATGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CAA 90 bp ACAACCTCTTCCTCAAACATGTGTAATCCACTAGCATCTGAATATACTGAATGGCAGCGCCTAGTGCAGTaGTTTCAGGCATGGAGGGTT +
Preference number: 5 (lower is better)
Translates to: TTSSSNMCNPLASEYTEWQRLVQ*FQAWRV
Trigger: AACCCTCCATGCCTGAAACAACTGCACTAGGCGCTG...CCATTCAGTATATTCAGATGCTAGTGGATTACACATGTTTGAGGAAGAGGTTGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CAA 90 bp TATTTACTGTTACATGCCACAGTTGCTTTTCTTCCAGCTGAGATAATTAAATGGCAGCGCCTAGTGCAGTaGTTTCAGGCATGGAGGGTT +
Preference number: 5 (lower is better)
Translates to: YLLLHATVAFLPAEIIKWQRLVQ*FQAWRV
Trigger: AACCCTCCATGCCTGAAACAACTGCACTAGGCGCTG...CCATTTAATTATCTCAGCTGGAAGAAAAGCAACTGTGGCATGTAACAGTAAATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CAA 90 bp AGAATCATGTTTGAGAAGAGTATTTACTGTTACATGCCACAGTTGCTTTTCTTCCAGCGCCTAGTGCAGTaGTTTCAGGCATGGAGGGTT +
Preference number: 5 (lower is better)
Translates to: RIMFEKSIYCYMPQLLFFQRLVQ*FQAWRV
Trigger: AACCCTCCATGCCTGAAACAACTGCACTAGGCGCTG...GAAGAAAAGCAACTGTGGCATGTAACAGTAAATACTCTTCTCAAACATGATTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CAA 90 bp AAAGTGGCTTTTGTGTGTGCTGAAACATCTCTGATAACTAAACTTTCATCTGGAGTTTATATGCTACGGTaGTCAGGAGGCCATGTTCAG +
Preference number: 5 (lower is better)
Translates to: KVAFVCAETSLITKLSSGVYMLR*SGGHVQ
Trigger: CTGAACATGGCCTCCTGACAACCGTAGCATATAAAC...TCCAGATGAAAGTTTAGTTATCAGAGATGTTTCAGCACACACAAAAGCCACTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8
CDS-3UTR CAA 90 bp TATTTACTGTTACATGCCACAGTTGCTTTTCTTCCAGCTGAGATAATTAAATGGGTTTATATGCTACGGTaGTCAGGAGGCCATGTTCAG +
Preference number: 5 (lower is better)
Translates to: YLLLHATVAFLPAEIIKWVYMLR*SGGHVQ
Trigger: CTGAACATGGCCTCCTGACAACCGTAGCATATAAAC...CCATTTAATTATCTCAGCTGGAAGAAAAGCAACTGTGGCATGTAACAGTAAATA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000026039.15
ENSMUST00000113978.9
ENSMUST00000142152.2
ENSMUST00000156390.8