RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GJE1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019867

Ensembl transcript IDs: ENSMUST00000020016.5

Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GAGTTAAAGACACATGTTTCAGTGTGTAGGGAAAGAGGTAAATTCTaGTTTGGTTGTGTGACATGGCACATAAATATCATCTCTGAACAT +
Preference number: 1 (lower is better)
Translates to: ELKTHVSVCRERGKF*FGCVTWHINIISEH
Trigger: ATGTTCAGAGATGATATTTATGTGCCATGTCACACAACCAAACCAGAATTTACCTCTTTCCCTACACACTGAAACATGTGTCTTTAACTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
3UTR TCA 72 bp AATCTACATAAGAAGTCTCTTTGGCCAAAAATAAGGTaGTCACTTAAAGTATTGTACATGAGAGAAGCCTGT +
Preference number: 3 (lower is better)
Translates to: NLHKKSLWPKIR*SLKVLYMREAC
Trigger: ACAGGCTTCTCTCATGTACAATACTTTAAGTGATCACCTTATTTTTGGCCAAAGAGACTTCTTATGTAGATT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS-3UTR CCA 90 bp CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACAAGAGAGTGTGGAACTaGCCGATCACAGTTGGAGGC +
Preference number: 4 (lower is better)
Translates to: HSGGRGRRISEFETSLVYKRVWN*PITVGG
Trigger: GCCTCCAACTGTGATCGGCCAGTTCCACACTCTCTT...GTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS-3UTR CCA 90 bp CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACAATGCCCAGAACACTTaGGGAGTTATTGGCCGGAAC +
Preference number: 4 (lower is better)
Translates to: HSGGRGRRISEFETSLVYNAQNT*GVIGRN
Trigger: GTTCCGGCCAATAACTCCCCAAGTGTTCTGGGCATT...GTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS-3UTR GCA 90 bp CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACAGGACAATCACTAGCTaGAATGCCCAGAACACTTGG +
Preference number: 4 (lower is better)
Translates to: HSGGRGRRISEFETSLVYRTITS*NAQNTW
Trigger: CCAAGTGTTCTGGGCATTGCAGCTAGTGATTGTCCT...GTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS-3UTR GCA 90 bp CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACAATCTGAAGCCAGAATaGGAACACCTCCAGGCTGAT +
Preference number: 4 (lower is better)
Translates to: HSGGRGRRISEFETSLVYNLKPE*EHLQAD
Trigger: ATCAGCCTGGAGGTGTTCGCATTCTGGCTTCAGATT...GTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS-3UTR CCA 90 bp CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACTATCTCTCGCTTGTCTaGGTCACAGCTGAAGTGCAA +
Preference number: 4 (lower is better)
Translates to: HSGGRGRRISEFETSLVYYLSLV*VTAEVQ
Trigger: TTGCACTTCAGCTGTGACCCAGACAAGCGAGAGATA...GTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS-3UTR CCA 90 bp CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACCATGCAGCATACAGGTaGAAAATAGCTCCAGGAAGC +
Preference number: 4 (lower is better)
Translates to: HSGGRGRRISEFETSLVYHAAYR*KIAPGS
Trigger: GCTTCCTGGAGCTATTTTCCACCTGTATGCTGCATG...GTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS-3UTR CCA 90 bp CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACCACTTGGGGAGTTATTaGCCGGAACTGATTGTAACA +
Preference number: 4 (lower is better)
Translates to: HSGGRGRRISEFETSLVYHLGSY*PELIVT
Trigger: TGTTACAATCAGTTCCGGCCAATAACTCCCCAAGTG...GTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS-3UTR GCA 90 bp CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACATTGATGCTTTTGCATaGAGCATACAGGTGGAAAAT +
Preference number: 4 (lower is better)
Translates to: HSGGRGRRISEFETSLVYIDAFA*SIQVEN
Trigger: ATTTTCCACCTGTATGCTGCATGCAAAAGCATCAAT...GTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS-3UTR GCA 90 bp CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACATAGTCTTTTCAAAGTaGTCTGGAACCATGCATTTT +
Preference number: 4 (lower is better)
Translates to: HSGGRGRRISEFETSLVYIVFSK*SGTMHF
Trigger: AAAATGCATGGTTCCAGAGCACTTTGAAAAGACTAT...GTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS TCA 90 bp CCCGTAGACAGCAAAGCCCAGCACTCCGAGGAAGAACATCCGCACTaGGCCGAAGAAGAGAGTGTGGAACTGGCCGATCACAGTTGGAGG +
Preference number: 5 (lower is better)
Translates to: PVDSKAQHSEEEHPH*AEEESVELADHSWR
Trigger: CCTCCAACTGTGATCGGCCAGTTCCACACTCTCTTCTTCGGCTCAGTGCGGATGTTCTTCCTCGGAGTGCTGGGCTTTGCTGTCTACGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS-3UTR CAA 90 bp CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACAGGTTTATCTCTCGCTaGTCTGGGTCACAGCTGAAG +
Preference number: 5 (lower is better)
Translates to: HSGGRGRRISEFETSLVYRFISR*SGSQLK
Trigger: CTTCAGCTGTGACCCAGACAAGCGAGAGATAAACCT...GTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS-3UTR CAA 90 bp CACTCAGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGACCAGCCTGGTCTACACACTTGGGGAGTTATaGGCCGGAACTGATTGTAAC +
Preference number: 5 (lower is better)
Translates to: HSGGRGRRISEFETSLVYTLGEL*AGTDCN
Trigger: GTTACAATCAGTTCCGGCCAATAACTCCCCAAGTGT...GTAGACCAGGCTGGTCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS TCA 90 bp GATTGTAACAGAACAGGTTTATCTCTCGCTTGTCTGGGTCACAGCTaGAGTGCAACGCCTCATTCCCGTAGACAGCAAAGCCCAGCACTC +
Preference number: 5 (lower is better)
Translates to: DCNRTGLSLACLGHS*SATPHSRRQQSPAL
Trigger: GAGTGCTGGGCTTTGCTGTCTACGGGAATGAGGCGTTGCACTTCAGCTGTGACCCAGACAAGCGAGAGATAAACCTGTTCTGTTACAATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS TCA 90 bp AGCCGAAGAGGTGAATCTGAAGCCAGAATGCGAACACCTCCAGGCTaGTTCTTAACAAGACCGAGAGGACGTAAATCACAGTGTACACGG +
Preference number: 5 (lower is better)
Translates to: SRRGESEARMRTPPG*FLTRPRGRKSQCTR
Trigger: CCGTGTACACTGTGATTTACGTCCTCTCGGTCTTGTTAAGAATCAGCCTGGAGGTGTTCGCATTCTGGCTTCAGATTCACCTCTTCGGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS CCA 90 bp TGGCCGGAACTGATTGTAACAGAACAGGTTTATCTCTCGCTTGTCTaGGTCACAGCTGAAGTGCAACGCCTCATTCCCGTAGACAGCAAA +
Preference number: 5 (lower is better)
Translates to: WPELIVTEQVYLSLV*VTAEVQRLIPVDSK
Trigger: TTTGCTGTCTACGGGAATGAGGCGTTGCACTTCAGCTGTGACCCAGACAAGCGAGAGATAAACCTGTTCTGTTACAATCAGTTCCGGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS TCA 72 bp AGCAAAGCCCAGCACTCCGAGGAAGAACATCCGCACTaGGCCGAAGAAGAGAGTGTGGAACTGGCCGATCAC +
Preference number: 6 (lower is better)
Translates to: SKAQHSEEEHPH*AEEESVELADH
Trigger: GTGATCGGCCAGTTCCACACTCTCTTCTTCGGCTCAGTGCGGATGTTCTTCCTCGGAGTGCTGGGCTTTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS TCA 72 bp AGAACAGGTTTATCTCTCGCTTGTCTGGGTCACAGCTaGAGTGCAACGCCTCATTCCCGTAGACAGCAAAGC +
Preference number: 6 (lower is better)
Translates to: RTGLSLACLGHS*SATPHSRRQQS
Trigger: GCTTTGCTGTCTACGGGAATGAGGCGTTGCACTTCAGCTGTGACCCAGACAAGCGAGAGATAAACCTGTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS CCA 72 bp AGGAAGAACATCCGCACTGAGCCGAAGAAGAGAGTGTaGAACTGGCCGATCACAGTTGGAGGCTTAACACAT +
Preference number: 6 (lower is better)
Translates to: RKNIRTEPKKRV*NWPITVGGLTH
Trigger: ATGTGTTAAGCCTCCAACTGTGATCGGCCAGTTCCACACTCTCTTCTTCGGCTCAGTGCGGATGTTCTTCCT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS TCA 72 bp GGTGAATCTGAAGCCAGAATGCGAACACCTCCAGGCTaGTTCTTAACAAGACCGAGAGGACGTAAATCACAG +
Preference number: 6 (lower is better)
Translates to: GESEARMRTPPG*FLTRPRGRKSQ
Trigger: CTGTGATTTACGTCCTCTCGGTCTTGTTAAGAATCAGCCTGGAGGTGTTCGCATTCTGGCTTCAGATTCACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS CCA 72 bp CTGATTGTAACAGAACAGGTTTATCTCTCGCTTGTCTaGGTCACAGCTGAAGTGCAACGCCTCATTCCCGTA +
Preference number: 6 (lower is better)
Translates to: LIVTEQVYLSLV*VTAEVQRLIPV
Trigger: TACGGGAATGAGGCGTTGCACTTCAGCTGTGACCCAGACAAGCGAGAGATAAACCTGTTCTGTTACAATCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS CAA 90 bp GCAGGACAATCACTAGCTGCAATGCCCAGAACACTTGGGGAGTTATaGGCCGGAACTGATTGTAACAGAACAGGTTTATCTCTCGCTTGT +
Preference number: 6 (lower is better)
Translates to: AGQSLAAMPRTLGEL*AGTDCNRTGLSLAC
Trigger: ACAAGCGAGAGATAAACCTGTTCTGTTACAATCAGTTCCGGCCAATAACTCCCCAAGTGTTCTGGGCATTGCAGCTAGTGATTGTCCTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS CCA 72 bp GCCGAAGAAGAGAGTGTGGAACTGGCCGATCACAGTTaGAGGCTTAACACATCCTTCATAGAAGTTCTTGAT +
Preference number: 6 (lower is better)
Translates to: AEEESVELADHS*RLNTSFIEVLD
Trigger: ATCAAGAACTTCTATGAAGGATGTGTTAAGCCTCCAACTGTGATCGGCCAGTTCCACACTCTCTTCTTCGGC
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS CAA 90 bp GAGGACGTAAATCACAGTGTACACGGGCTTCTGAAGAATGCAGTCTaGATTGATGCTTTTGCATGCAGCATACAGGTGGAAAATAGCTCC +
Preference number: 6 (lower is better)
Translates to: EDVNHSVHGLLKNAV*IDAFACSIQVENSS
Trigger: GGAGCTATTTTCCACCTGTATGCTGCATGCAAAAGCATCAATCAAGACTGCATTCTTCAGAAGCCCGTGTACACTGTGATTTACGTCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS CAA 72 bp TCACTAGCTGCAATGCCCAGAACACTTGGGGAGTTATaGGCCGGAACTGATTGTAACAGAACAGGTTTATCT +
Preference number: 6 (lower is better)
Translates to: SLAAMPRTLGEL*AGTDCNRTGLS
Trigger: AGATAAACCTGTTCTGTTACAATCAGTTCCGGCCAATAACTCCCCAAGTGTTCTGGGCATTGCAGCTAGTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS GCA 72 bp CTTCTGAAGAATGCAGTCTTGATTGATGCTTTTGCATaGAGCATACAGGTGGAAAATAGCTCCAGGAAGCAG +
Preference number: 6 (lower is better)
Translates to: LLKNAVLIDAFA*SIQVENSSRKQ
Trigger: CTGCTTCCTGGAGCTATTTTCCACCTGTATGCTGCATGCAAAAGCATCAATCAAGACTGCATTCTTCAGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5
CDS CAA 72 bp AAGAGATTCAGTATCACACAAGTATATCGGCTTCACTaGGAAGCCGAAGAGGTGAATCTGAAGCCAGAATGC +
Preference number: 6 (lower is better)
Translates to: KRFSITQVYRLH*EAEEVNLKPEC
Trigger: GCATTCTGGCTTCAGATTCACCTCTTCGGCTTCCAAGTGAAGCCGATATACTTGTGTGATACTGAATCTCTT
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020016.5