Pregenerated sensors for GJD4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036855Ensembl transcript IDs: ENSMUST00000041007.4
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCCACCCCTACCAAGGCCATCCTAGGCCCTGCAGGGCACCTTGGTaGCTTGCTCCAAAGCTGCAGAGGGAGGTTTTTCTTAATCAAACA | + |
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Preference number: 1 (lower is better) Translates to: FHPYQGHPRPCRAPW*LAPKLQREVFLNQT Trigger: TGTTTGATTAAGAAAAACCTCCCTCTGCAGCTTTGGAGCAAGTCACCAAGGTGCCCTGCAGGGCCTAGGATGGCCTTGGTAGGGGTGGAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR GCA 90 bp | CAGCCTAAGGACTATCCTGAAGGACCATCCCAACATTTACAAGTTTaGAGAGACATCAGCAACACCCTTGCCTCCCCCACTCATGCTATC | + |
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Preference number: 1 (lower is better) Translates to: QPKDYPEGPSQHLQV*RDISNTLASPTHAI Trigger: GATAGCATGAGTGGGGGAGGCAAGGGTGTTGCTGATGTCTCTGCAAACTTGTAAATGTTGGGATGGTCCTTCAGGATAGTCCTTAGGCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR GCA 90 bp | CAAGCTGACAACTTAAGTTCTGCTTGCAAGATTTTCTCTCTGATCTaGTTTCTCTGGAGATCTCCAGACAGCTCTTTCTGTTTTCTACTC | + |
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Preference number: 1 (lower is better) Translates to: QADNLSSACKIFSLI*FLWRSPDSSFCFLL Trigger: GAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTCCAGAGAAAGCAGATCAGAGAGAAAATCTTGCAAGCAGAACTTAAGTTGTCAGCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR TCA 90 bp | AGAGCATTGAAACAAACAAATCGAAGTCAAATCATGGGTCCAAGCTaGCAACTTAAGTTCTGCTTGCAAGATTTTCTCTCTGATCTGCTT | + |
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Preference number: 1 (lower is better) Translates to: RALKQTNRSQIMGPS*QLKFCLQDFLSDLL Trigger: AAGCAGATCAGAGAGAAAATCTTGCAAGCAGAACTTAAGTTGTCAGCTTGGACCCATGATTTGACTTCGATTTGTTTGTTTCAATGCTCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR GCA 90 bp | GAGACATCAGCAACACCCTTGCCTCCCCCACTCATGCTATCCCTGATTAGCATGAGGCCCATGCCCTGTTaGCCCTGTTTCAGGGGTAGG | + |
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Preference number: 2 (lower is better) Translates to: ETSATPLPPPLMLSLISMRPMPC*PCFRGR Trigger: CCTACCCCTGAAACAGGGGCAACAGGGCATGGGCCT...CATGCTAATCAGGGATAGCATGAGTGGGGGAGGCAAGGGTGTTGCTGATGTCTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR TCA 90 bp | TTGCCTCCCCCACTCATGCTATCCCTGATTAGCATGGAGTCATTAACGTTAACATGCAGGGCACCTTGGTaGCTTGCTCCAAAGCTGCAG | + |
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Preference number: 2 (lower is better) Translates to: LPPPLMLSLISMESLTLTCRAPW*LAPKLQ Trigger: CTGCAGCTTTGGAGCAAGTCACCAAGGTGCCCTGCA...TGTTAACGTTAATGACTCCATGCTAATCAGGGATAGCATGAGTGGGGGAGGCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR GCA 90 bp | GAGATCTCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGTTCTCCAAGCAGTGGCACCTTGGTGACTTaGTCCAAAGCTGCAGAGGGA | + |
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Preference number: 2 (lower is better) Translates to: EISRQLFLFSTLDSSPSSGTLVT*SKAAEG Trigger: TCCCTCTGCAGCTTTGGAGCAAGTCACCAAGGTGCC...ACTGCTTGGAGAACTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR TCA 90 bp | CATATCAATCCAGCCATTTACTCCAGGTTCCCTTTTGATTATCCTATGAATCAGCCTCTTACCCTGCCTTaGGTACAAAGGGCAGTACGG | + |
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Preference number: 2 (lower is better) Translates to: HINPAIYSRFPFDYPMNQPLTLP*VQRAVR Trigger: CCGTACTGCCCTTTGTACTCAAGGCAGGGTAAGAGG...CTGATTCATAGGATAATCAAAAGGGAACCTGGAGTAAATGGCTGGATTGATATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR CCA 90 bp | TCTGGAGATCTCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGTTCTCCAAGATGACCCCAGCCTCTTaGTTCTTAGGAGACAGCAAA | + |
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Preference number: 2 (lower is better) Translates to: SGDLQTALSVFYSRQFSKMTPAS*FLGDSK Trigger: TTTGCTGTCTCCTAAGAACCAAGAGGCTGGGGTCAT...CTTGGAGAACTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTCCAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR TCA 90 bp | TCTCACAGCCTAAGGACTATCCTGAAGGACCATCCCAACATTTACAAGTTTGCAAGCAAGAATACAAGATaGAGAAACCTCTTACCCTGC | + |
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Preference number: 2 (lower is better) Translates to: SHSLRTILKDHPNIYKFASKNTR*RNLLPC Trigger: GCAGGGTAAGAGGTTTCTTCATCTTGTATTCTTGCT...TGCAAACTTGTAAATGTTGGGATGGTCCTTCAGGATAGTCCTTAGGCTGTGAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR GCA 90 bp | ATTATGTCTATTTTAACTCATGCTTCTAGAGGTTCTTCTCACAGCCTAAGGACTCATCAGCAACACCCTTaGCTCCCCCACTCATGCTAT | + |
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Preference number: 2 (lower is better) Translates to: IMSILTHASRGSSHSLRTHQQHP*LPHSCY Trigger: ATAGCATGAGTGGGGGAGGCAAGGGTGTTGCTGATG...AGTCCTTAGGCTGTGAGAAGAACCTCTAGAAGCATGAGTTAAAATAGACATAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR CCA 90 bp | AACCAGCCTTCACTTGGAGAGAGAGAAGGGGTATTTGAGAGCATTGAAACAAACATAAAAGTGATTAGATaGAGGAGGAGGTTTGCCCAA | + |
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Preference number: 2 (lower is better) Translates to: NQPSLGEREGVFESIETNIKVIR*RRRFAQ Trigger: TTGGGCAAACCTCCTCCTCCATCTAATCACTTTTAT...GTTTGTTTCAATGCTCTCAAATACCCCTTCTCTCTCTCCAAGTGAAGGCTGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR GCA 90 bp | CATATCAATCCAGCCATTTACTCCAGGTTCCCTTTTGATTATCCTATGAATCAGGACTTGCTCCAAAGCTaGAGAGGGAGGTTTTTCTTA | + |
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Preference number: 2 (lower is better) Translates to: HINPAIYSRFPFDYPMNQDLLQS*RGRFFL Trigger: TAAGAAAAACCTCCCTCTGCAGCTTTGGAGCAAGTC...CTGATTCATAGGATAATCAAAAGGGAACCTGGAGTAAATGGCTGGATTGATATG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR GCA 90 bp | CAACTTAAGTTCTGCTTGCAAGATTTTCTCTCTGATCTGCTTTCTCTGGAGATCCAACATTTACAAGTTTaGAGAGACATCAGCAACACC | + |
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Preference number: 2 (lower is better) Translates to: QLKFCLQDFLSDLLSLEIQHLQV*RDISNT Trigger: GGTGTTGCTGATGTCTCTGCAAACTTGTAAATGTTG...GATCTCCAGAGAAAGCAGATCAGAGAGAAAATCTTGCAAGCAGAACTTAAGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR GCA 90 bp | TCTGCTTTCTCTGGAGATCTCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGGGTTTACAGTATAGCTaGTTTTGTTCCTTTCAGTTT | + |
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Preference number: 2 (lower is better) Translates to: SAFSGDLQTALSVFYSRQGLQYS*FCSFQF Trigger: AAACTGAAAGGAACAAAAGCAGCTATACTGTAAACC...CTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTCCAGAGAAAGCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR TCA 72 bp | TACCAAGGCCATCCTAGGCCCTGCAGGGCACCTTGGTaGCTTGCTCCAAAGCTGCAGAGGGAGGTTTTTCTT | + |
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Preference number: 3 (lower is better) Translates to: YQGHPRPCRAPW*LAPKLQREVFL Trigger: AAGAAAAACCTCCCTCTGCAGCTTTGGAGCAAGTCACCAAGGTGCCCTGCAGGGCCTAGGATGGCCTTGGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR CAA 90 bp | TCTGCTTTCTCTGGAGATCTCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGGGGCACCTTGGTGACTaGCTCCAAAGCTGCAGAGGG | + |
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Preference number: 3 (lower is better) Translates to: SAFSGDLQTALSVFYSRQGHLGD*LQSCRG Trigger: CCCTCTGCAGCTTTGGAGCAAGTCACCAAGGTGCCC...CTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTCCAGAGAAAGCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR GCA 72 bp | GGCCCTGCAGGGCACCTTGGTGACTTGCTCCAAAGCTaGAGAGGGAGGTTTTTCTTAATCAAACAGTTCAAT | + |
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Preference number: 3 (lower is better) Translates to: GPAGHLGDLLQS*RGRFFLIKQFN Trigger: ATTGAACTGTTTGATTAAGAAAAACCTCCCTCTGCAGCTTTGGAGCAAGTCACCAAGGTGCCCTGCAGGGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR GCA 72 bp | GACTATCCTGAAGGACCATCCCAACATTTACAAGTTTaGAGAGACATCAGCAACACCCTTGCCTCCCCCACT | + |
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Preference number: 3 (lower is better) Translates to: DYPEGPSQHLQV*RDISNTLASPT Trigger: AGTGGGGGAGGCAAGGGTGTTGCTGATGTCTCTGCAAACTTGTAAATGTTGGGATGGTCCTTCAGGATAGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR TCA 72 bp | GTCCAGTATTATACAAACAAACCTTACAGCAGCCATTaGCACTCATGTAGGCCCATGCCCTGTTGCCCCTGT | + |
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Preference number: 3 (lower is better) Translates to: VQYYTNKPYSSH*HSCRPMPCCPC Trigger: ACAGGGGCAACAGGGCATGGGCCTACATGAGTGTCAATGGCTGCTGTAAGGTTTGTTTGTATAATACTGGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR CAA 90 bp | TCTGGAGATCTCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGTTCTCCAAGTGTCTGGGCCTAACCTaGCTCTGCCTTTGTAAGCAC | + |
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Preference number: 3 (lower is better) Translates to: SGDLQTALSVFYSRQFSKCLGLT*LCLCKH Trigger: GTGCTTACAAAGGCAGAGCAAGGTTAGGCCCAGACA...CTTGGAGAACTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTCCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR CAA 90 bp | TCTGGAGATCTCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGTTCTCCAAGCATGACCCCAGCCTCTaGGTTCTTAGGAGACAGCAA | + |
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Preference number: 3 (lower is better) Translates to: SGDLQTALSVFYSRQFSKHDPSL*VLRRQQ Trigger: TTGCTGTCTCCTAAGAACCAAGAGGCTGGGGTCATG...CTTGGAGAACTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTCCAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR TCA 72 bp | ACATATCAATCCAGCCATTTACTCCAGGTTCCCTTTTaGTTATCCTATGAATCAGCATCCCATGACCCCAGC | + |
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Preference number: 3 (lower is better) Translates to: TYQSSHLLQVPF*LSYESASHDPS Trigger: GCTGGGGTCATGGGATGCTGATTCATAGGATAATCAAAAGGGAACCTGGAGTAAATGGCTGGATTGATATGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR CAA 90 bp | TCTGCTTTCTCTGGAGATCTCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGCCAACATTTACAAGTTaGCAGAGACATCAGCAACAC | + |
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Preference number: 3 (lower is better) Translates to: SAFSGDLQTALSVFYSRQPTFTS*QRHQQH Trigger: GTGTTGCTGATGTCTCTGCAAACTTGTAAATGTTGG...CTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTCCAGAGAAAGCAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR TCA 72 bp | TCCACAATCTCTCCATCTCCCTCCTTAGTAGCTTTCTaGCAAGTTGGTTTACAGTATAGCTGCTTTTGTTCC | + |
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Preference number: 3 (lower is better) Translates to: STISPSPSLVAF*QVGLQYSCFCS Trigger: GGAACAAAAGCAGCTATACTGTAAACCAACTTGTCAGAAAGCTACTAAGGAGGGAGATGGAGAGATTGTGGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR CAA 90 bp | AACCAGCCTTCACTTGGAGAGAGAGAAGGGGTATTTGAGAGCATTGAAACAAACTGCTATTCTAAAATATaGCAGATCCTAAGCCCAGTC | + |
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Preference number: 3 (lower is better) Translates to: NQPSLGEREGVFESIETNCYSKI*QILSPV Trigger: GACTGGGCTTAGGATCTGCAATATTTTAGAATAGCA...GTTTGTTTCAATGCTCTCAAATACCCCTTCTCTCTCTCCAAGTGAAGGCTGGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR GCA 72 bp | AAATCATGGGTCCAAGCTGACAACTTAAGTTCTGCTTaGAAGATTTTCTCTCTGATCTGCTTTCTCTGGAGA | + |
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Preference number: 3 (lower is better) Translates to: KSWVQADNLSSA*KIFSLICFLWR Trigger: TCTCCAGAGAAAGCAGATCAGAGAGAAAATCTTGCAAGCAGAACTTAAGTTGTCAGCTTGGACCCATGATTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR-3UTR CAA 90 bp | AACCAGCCTTCACTTGGAGAGAGAGAAGGGGTATTTGAGAGCATTGAAACAAACCAACTTAAGTTCTGCTaGCAAGATTTTCTCTCTGAT | + |
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Preference number: 3 (lower is better) Translates to: NQPSLGEREGVFESIETNQLKFC*QDFLSD Trigger: ATCAGAGAGAAAATCTTGCAAGCAGAACTTAAGTTG...GTTTGTTTCAATGCTCTCAAATACCCCTTCTCTCTCTCCAAGTGAAGGCTGGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR TCA 72 bp | GTTTACAGTATAGCTGCTTTTGTTCCTTTCAGTTTGTaGAGCCCCCATATAATTCATATTGCATCCTTATAT | + |
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Preference number: 3 (lower is better) Translates to: VYSIAAFVPFSL*SPHIIHIASLY Trigger: ATATAAGGATGCAATATGAATTATATGGGGGCTTCACAAACTGAAAGGAACAAAAGCAGCTATACTGTAAAC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| 3UTR CAA 72 bp | AAGGCCATCCTAGGCCCTGCAGGGCACCTTGGTGACTaGCTCCAAAGCTGCAGAGGGAGGTTTTTCTTAATC | + |
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Preference number: 4 (lower is better) Translates to: KAILGPAGHLGD*LQSCRGRFFLI Trigger: GATTAAGAAAAACCTCCCTCTGCAGCTTTGGAGCAAGTCACCAAGGTGCCCTGCAGGGCCTAGGATGGCCTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR GCA 90 bp | TTGCCTCCCCCACTCATGCTATCCCTGATTAGCATGGAGTCATTAACGTTAACACGGCCTCCAGCAGCATaGGCAGCAGTAGGTGCACCA | + |
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Preference number: 4 (lower is better) Translates to: LPPPLMLSLISMESLTLTRPPAA*AAVGAP Trigger: TGGTGCACCTACTGCTGCGCATGCTGCTGGAGGCCG...TGTTAACGTTAATGACTCCATGCTAATCAGGGATAGCATGAGTGGGGGAGGCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR GCA 90 bp | TACTCCAGGTTCCCTTTTGATTATCCTATGAATCAGCATCCCATGACCCCAGCCAGCAAGGCCAGGCTCTaGACTAGCCAGAATCGCAGC | + |
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Preference number: 4 (lower is better) Translates to: YSRFPFDYPMNQHPMTPASKARL*TSQNRS Trigger: GCTGCGATTCTGGCTAGTGCAGAGCCTGGCCTTGCT...GGCTGGGGTCATGGGATGCTGATTCATAGGATAATCAAAAGGGAACCTGGAGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR GCA 90 bp | TCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGTTCTCCAAGCAGTTCTGTCCCTGAGCAGGGTACATaGGAGCAAGACACGCGGGCG | + |
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Preference number: 4 (lower is better) Translates to: SRQLFLFSTLDSSPSSSVPEQGT*EQDTRA Trigger: CGCCCGCGTGTCTTGCTCGCATGTACCCTGCTCAGG...GACAGAACTGCTTGGAGAACTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CCA 90 bp | TTGCCTCCCCCACTCATGCTATCCCTGATTAGCATGGAGTCATTAACGTTAACAGGAGTGACTTCTCCGTaGGCCGCGACACGTAGCAGT | + |
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Preference number: 4 (lower is better) Translates to: LPPPLMLSLISMESLTLTGVTSP*AATRSS Trigger: ACTGCTACGTGTCGCGGCCCACGGAGAAGTCACTCC...TGTTAACGTTAATGACTCCATGCTAATCAGGGATAGCATGAGTGGGGGAGGCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR GCA 90 bp | TCTCACAGCCTAAGGACTATCCTGAAGGACCATCCCAACATTTACAAGTTTGCATCAAATGGGGAGCACTaGCTGAGGTGGTCAGCCGGC | + |
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Preference number: 4 (lower is better) Translates to: SHSLRTILKDHPNIYKFASNGEH*LRWSAG Trigger: GCCGGCTGACCACCTCAGGCAGTGCTCCCCATTTGA...TGCAAACTTGTAAATGTTGGGATGGTCCTTCAGGATAGTCCTTAGGCTGTGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CCA 90 bp | TCTGGAGATCTCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGTTCTCCAAGCTGTGTCTGGCCAGGTaGCTCTGGGTAGCCAAGGAG | + |
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Preference number: 4 (lower is better) Translates to: SGDLQTALSVFYSRQFSKLCLAR*LWVAKE Trigger: CTCCTTGGCTACCCAGAGCCACCTGGCCAGACACAG...CTTGGAGAACTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTCCAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR GCA 90 bp | TCCAGTATTATACAAACAAACCTTACAGCAGCCATTGACACTCATGTAGGCCCAGAGGCAAGGGGGAGGTaGAGGTACTTCACAGACTGG | + |
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Preference number: 4 (lower is better) Translates to: SSIIQTNLTAAIDTHVGPEARGR*RYFTDW Trigger: CCAGTCTGTGAAGTACCTGCACCTCCCCCTTGCCTC...TGGGCCTACATGAGTGTCAATGGCTGCTGTAAGGTTTGTTTGTATAATACTGGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CCA 90 bp | TCTCACAGCCTAAGGACTATCCTGAAGGACCATCCCAACATTTACAAGTTTGCAGAGCTTGAGGCTTGCTaGCTGAACTGTGTCTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: SHSLRTILKDHPNIYKFAELEAC*LNCVWP Trigger: TGGCCAGACACAGTTCAGCCAGCAAGCCTCAAGCTC...TGCAAACTTGTAAATGTTGGGATGGTCCTTCAGGATAGTCCTTAGGCTGTGAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR TCA 90 bp | TTCTCACAGCCTAAGGACTATCCTGAAGGACCATCCCAACATTTACAAGTTTGCATCCTCATAGATAGGTaGCCCTGCCAAGACCACCAC | + |
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Preference number: 4 (lower is better) Translates to: FSQPKDYPEGPSQHLQVCILIDR*PCQDHH Trigger: GTGGTGGTCTTGGCAGGGTCACCTATCTATGAGGAT...GCAAACTTGTAAATGTTGGGATGGTCCTTCAGGATAGTCCTTAGGCTGTGAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR TCA 90 bp | CATATCAATCCAGCCATTTACTCCAGGTTCCCTTTTGATTATCCTATGAATCAGGCAGGTCAGCCAAGCTaGGCAGGAAGGATAGCGCAC | + |
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Preference number: 4 (lower is better) Translates to: HINPAIYSRFPFDYPMNQAGQPS*AGRIAH Trigger: GTGCGCTATCCTTCCTGCTCAGCTTGGCTGACCTGC...CTGATTCATAGGATAATCAAAAGGGAACCTGGAGTAAATGGCTGGATTGATATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR GCA 90 bp | TCTGCTTTCTCTGGAGATCTCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGCAAGGAGAGTTCATCTaGCTGGGTGTTTTTGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: SAFSGDLQTALSVFYSRQQGEFI*LGVFAP Trigger: GGGGGCAAAAACACCCAGGCAGATGAACTCTCCTTG...CTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTCCAGAGAAAGCAGA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CCA 90 bp | TCACAGCCTAAGGACTATCCTGAAGGACCATCCCAACATTTACAAGTTTGCAGAGGTCGTAGCAAACGTTaGCACATCCTGGTTGCAGTG | + |
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Preference number: 4 (lower is better) Translates to: SQPKDYPEGPSQHLQVCRGRSKR*HILVAV Trigger: CACTGCAACCAGGATGTGCCAACGTTTGCTACGACC...TCTGCAAACTTGTAAATGTTGGGATGGTCCTTCAGGATAGTCCTTAGGCTGTGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CCA 90 bp | GAGATCTCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGTTCTCCAAGCAGTCATTCACCCACTGCGTaGTCCTCAGTGTCTTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: EISRQLFLFSTLDSSPSSHSPTA*SSVSFS Trigger: GGAGAAAGACACTGAGGACCACGCAGTGGGTGAATG...ACTGCTTGGAGAACTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CCA 90 bp | TACTCCAGGTTCCCTTTTGATTATCCTATGAATCAGCATCCCATGACCCCAGCCTTTTTGGTTCTCAAATaGGGAGCACTGCCTGAGGTG | + |
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Preference number: 4 (lower is better) Translates to: YSRFPFDYPMNQHPMTPAFLVLK*GALPEV Trigger: CACCTCAGGCAGTGCTCCCCATTTGAGAACCAAAAA...GGCTGGGGTCATGGGATGCTGATTCATAGGATAATCAAAAGGGAACCTGGAGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR TCA 90 bp | AAGCCCAGTCTTTTATTTTACATATCAATCCAGCCATTTACTCCAGGTTCCCTTTTGAGGCTTGCTGGCTaGACTGTGTCTGGCCAGGTG | + |
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Preference number: 4 (lower is better) Translates to: KPSLLFYISIQPFTPGSLLRLAG*TVSGQV Trigger: CACCTGGCCAGACACAGTTCAGCCAGCAAGCCTCAA...AAGGGAACCTGGAGTAAATGGCTGGATTGATATGTAAAATAAAAGACTGGGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CCA 90 bp | AACCAGCCTTCACTTGGAGAGAGAGAAGGGGTATTTGAGAGCATTGAAACAAACAGGTACTTCACAGACTaGTCTAGCCTCTCCATTCAC | + |
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Preference number: 4 (lower is better) Translates to: NQPSLGEREGVFESIETNRYFTD*SSLSIH Trigger: GTGAATGGAGAGGCTAGACCAGTCTGTGAAGTACCT...GTTTGTTTCAATGCTCTCAAATACCCCTTCTCTCTCTCCAAGTGAAGGCTGGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR TCA 90 bp | CAACTTAAGTTCTGCTTGCAAGATTTTCTCTCTGATCTGCTTTCTCTGGAGATCTCTCTCTGTGGAATCTaGGCTCATGTGCTGTGTGAG | + |
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Preference number: 4 (lower is better) Translates to: QLKFCLQDFLSDLLSLEISLCGI*AHVLCE Trigger: CTCACACAGCACATGAGCTCAGATTCCACAGAGAGA...GATCTCCAGAGAAAGCAGATCAGAGAGAAAATCTTGCAAGCAGAACTTAAGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CCA 90 bp | GAGATCTCCAGACAGCTCTTTCTGTTTTCTACTCTAGACAGTTCTCCAAGCAGTAGTGAAGTCTCTCTGTaGAATCTGAGCTCATGTGCT | + |
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Preference number: 4 (lower is better) Translates to: EISRQLFLFSTLDSSPSSSEVSL*NLSSCA Trigger: AGCACATGAGCTCAGATTCCACAGAGAGACTTCACT...ACTGCTTGGAGAACTGTCTAGAGTAGAAAACAGAAAGAGCTGTCTGGAGATCTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR GCA 90 bp | ATTATGTCTATTTTAACTCATGCTTCTAGAGGTTCTTCTCACAGCCTAAGGACTATGGAGCTTGAGGCTTaGTGGCTGAACTGTGTCTGG | + |
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Preference number: 4 (lower is better) Translates to: IMSILTHASRGSSHSLRTMELEA*WLNCVW Trigger: CCAGACACAGTTCAGCCAGCAAGCCTCAAGCTCCAT...AGTCCTTAGGCTGTGAGAAGAACCTCTAGAAGCATGAGTTAAAATAGACATAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CCA 90 bp | AACTTAAGTTCTGCTTGCAAGATTTTCTCTCTGATCTGCTTTCTCTGGAGATCTGCCTCACTAGCATCTTaGTCTGAATGTTCCAGCAGC | + |
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Preference number: 4 (lower is better) Translates to: NLSSACKIFSLICFLWRSASLAS*SECSSS Trigger: GCTGCTGGAACATTCAGACCAAGATGCTAGTGAGGC...AGATCTCCAGAGAAAGCAGATCAGAGAGAAAATCTTGCAAGCAGAACTTAAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS TCA 90 bp | AGGTCCAGTGAAGTCTCTCTGTGGAATCTGAGCTCATGTGCTGTGTaGGCCACTGTTAGCCTGTCACCAGCTGAGGAAGTGGCCTCACTA | + |
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Preference number: 5 (lower is better) Translates to: RSSEVSLWNLSSCAV*ATVSLSPAEEVASL Trigger: TAGTGAGGCCACTTCCTCAGCTGGTGACAGGCTAACAGTGGCTCACACAGCACATGAGCTCAGATTCCACAGAGAGACTTCACTGGACCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CAA 90 bp | TTGCCTCCCCCACTCATGCTATCCCTGATTAGCATGGAGTCATTAACGTTAACACTCCTGTCTGTCCTCTaGGTCCACCTGACCTTGGCT | + |
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Preference number: 5 (lower is better) Translates to: LPPPLMLSLISMESLTLTLLSVL*VHLTLA Trigger: AGCCAAGGTCAGGTGGACCAAGAGGACAGACAGGAG...TGTTAACGTTAATGACTCCATGCTAATCAGGGATAGCATGAGTGGGGGAGGCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CAA 90 bp | AACCAGCCTTCACTTGGAGAGAGAGAAGGGGTATTTGAGAGCATTGAAACAAACCCTGGTTGCAGTGTGTaGCAAATAAACCTCTCTTGT | + |
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Preference number: 5 (lower is better) Translates to: NQPSLGEREGVFESIETNPGCSV*QINLSC Trigger: ACAAGAGAGGTTTATTTGCAACACACTGCAACCAGG...GTTTGTTTCAATGCTCTCAAATACCCCTTCTCTCTCTCCAAGTGAAGGCTGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CAA 90 bp | ATTATGTCTATTTTAACTCATGCTTCTAGAGGTTCTTCTCACAGCCTAAGGACTGAACTCAGGCACAACTaGTTCCTCCTGTCTGTCCTC | + |
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Preference number: 5 (lower is better) Translates to: IMSILTHASRGSSHSLRTELRHN*FLLSVL Trigger: GAGGACAGACAGGAGGAACAAGTTGTGCCTGAGTTC...AGTCCTTAGGCTGTGAGAAGAACCTCTAGAAGCATGAGTTAAAATAGACATAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CAA 90 bp | AAGCCCAGTCTTTTATTTTACATATCAATCCAGCCATTTACTCCAGGTTCCCTTGTTGGCACATCCTGGTaGCAGTGTGTTGCAAATAAA | + |
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Preference number: 5 (lower is better) Translates to: KPSLLFYISIQPFTPGSLVGTSW*QCVANK Trigger: TTTATTTGCAACACACTGCAACCAGGATGTGCCAAC...AAGGGAACCTGGAGTAAATGGCTGGATTGATATGTAAAATAAAAGACTGGGCTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS-3UTR CAA 90 bp | AACTTAAGTTCTGCTTGCAAGATTTTCTCTCTGATCTGCTTTCTCTGGAGATCTACCCACTCAGATTTTTaGGTTCTCAAATGGGGAGCA | + |
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Preference number: 5 (lower is better) Translates to: NLSSACKIFSLICFLWRSTHSDF*VLKWGA Trigger: TGCTCCCCATTTGAGAACCAAAAAATCTGAGTGGGT...AGATCTCCAGAGAAAGCAGATCAGAGAGAAAATCTTGCAAGCAGAACTTAAGTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS TCA 72 bp | GGTGGTCAGCCGGCATGGAGCTTGAGGCTTGCTGGCTaGACTGTGTCTGGCCAGGTGGCTCTGGGTAGCCAA | + |
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Preference number: 6 (lower is better) Translates to: GGQPAWSLRLAG*TVSGQVALGSQ Trigger: TTGGCTACCCAGAGCCACCTGGCCAGACACAGTTCAGCCAGCAAGCCTCAAGCTCCATGCCGGCTGACCACC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS GCA 72 bp | CCAAAGACCACCGAAGGCAGAAGCAAGGCCAGGCTCTaGACTAGCCAGAATCGCAGCGGTGACACTGGGGAA | + |
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Preference number: 6 (lower is better) Translates to: PKTTEGRSKARL*TSQNRSGDTGE Trigger: TTCCCCAGTGTCACCGCTGCGATTCTGGCTAGTGCAGAGCCTGGCCTTGCTTCTGCCTTCGGTGGTCTTTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS CAA 90 bp | GTCACTCTGCCCTGCTGTCCACATGCAGGGGAACTCAGGCACAACTaGTTCCTCCTGTCTGTCCTCTTGGTCCACCTGACCTTGGCTAAG | + |
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Preference number: 6 (lower is better) Translates to: VTLPCCPHAGELRHN*FLLSVLLVHLTLAK Trigger: CTTAGCCAAGGTCAGGTGGACCAAGAGGACAGACAGGAGGAACAAGTTGTGCCTGAGTTCCCCTGCATGTGGACAGCAGGGCAGAGTGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS TCA 72 bp | TTCTCCTCGGCAGGATCCAAAGCAGGTCAGCCAAGCTaGGCAGGAAGGATAGCGCACTCACTGCCCAAAAGA | + |
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Preference number: 6 (lower is better) Translates to: FSSAGSKAGQPS*AGRIAHSLPKR Trigger: TCTTTTGGGCAGTGAGTGCGCTATCCTTCCTGCTCAGCTTGGCTGACCTGCTTTGGATCCTGCCGAGGAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS GCA 72 bp | ACAGGCCTGACCAACATTGCTGTTGTCACTCTGCCCTaGTGTCCACATGCAGGGGAACTCAGGCACAACTTG | + |
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Preference number: 6 (lower is better) Translates to: TGLTNIAVVTLP*CPHAGELRHNL Trigger: CAAGTTGTGCCTGAGTTCCCCTGCATGTGGACAGCAGGGCAGAGTGACAACAGCAATGTTGGTCAGGCCTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS GCA 72 bp | CAACATTGCTGTTGTCACTCTGCCCTGCTGTCCACATaGAGGGGAACTCAGGCACAACTTGTTCCTCCTGTC | + |
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Preference number: 6 (lower is better) Translates to: QHCCCHSALLST*RGTQAQLVPPV Trigger: GACAGGAGGAACAAGTTGTGCCTGAGTTCCCCTGCATGTGGACAGCAGGGCAGAGTGACAACAGCAATGTTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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| CDS TCA 72 bp | GAAGTCTCTCTGTGGAATCTGAGCTCATGTGCTGTGTaGGCCACTGTTAGCCTGTCACCAGCTGAGGAAGTG | + |
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Preference number: 6 (lower is better) Translates to: EVSLWNLSSCAV*ATVSLSPAEEV Trigger: CACTTCCTCAGCTGGTGACAGGCTAACAGTGGCTCACACAGCACATGAGCTCAGATTCCACAGAGAGACTTC 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000041007.4 |
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