Pregenerated sensors for GJD3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000047197

Ensembl transcript IDs: ENSMUST00000062931.2

Found 14 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	GGCGGCGGGAGCAGCTTGGCGCGCTGGCGACCCTTCCAGAGCAGGTaGCCCAGCTCCGCCACGCTGAGCAGCGCCGACAGCAGCCCGACG	+
Preference number: 5 (lower is better) Translates to: GGGSSLARWRPFQSR*PSSATLSSADSSPT Trigger: CGTCGGGCTGCTGTCGGCGCTGCTCAGCGTGGCGGAGCTGGGTCACCTGCTCTGGAAGGGTCGCCAGCGCGCCAAGCTGCTCCCGCCGCC 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS TCA 90 bp	TTTGCTGTGGCCGCTGCCGCCTTCGCCCTCGCTGTCGCCTGCCGGTaGGCGGTGCGCGTAGGCTGGCGGGCCGAAAGGGTCGGGGTCCCC	+
Preference number: 5 (lower is better) Translates to: FAVAAAAFALAVACR*AVRVGWRAERVGVP Trigger: GGGGACCCCGACCCTTTCGGCCCGCCAGCCTACGCGCACCGCTCACCGGCAGGCGACAGCGAGGGCGAAGGCGGCAGCGGCCACAGCAAA 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS CCA 90 bp	CTCGGTGGGCCGGCTCACGAAACAGTCGACCGTGTGCGGACAAGGTaGCCCGGCGCACGCGTAGTGCGGGTCCACGCGGAAGCCGTAGAG	+
Preference number: 5 (lower is better) Translates to: LGGPAHETVDRVRTR*PGARVVRVHAEAVE Trigger: CTCTACGGCTTCCGCGTGGACCCGCACTACGCGTGCGCCGGGCCACCTTGTCCGCACACGGTCGACTGTTTCGTGAGCCGGCCCACCGAG 70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS TCA 90 bp	GCTGCGCACCACCCGCCTCCTTGCTGGCCTGGTGCATGGAGTAGATaGCGAACAGCACCGGCGGCGCCGACAGCAGCAGGATGTGGAAGA	+
Preference number: 5 (lower is better) Translates to: AAHHPPPCWPGAWSR*RTAPAAPTAAGCGR Trigger: TCTTCCACATCCTGCTGCTGTCGGCGCCGCCGGTGCTGTTCGTCATCTACTCCATGCACCAGGCCAGCAAGGAGGCGGGTGGTGCGCAGC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS CCA 90 bp	GCAGCCCGACGGCGAAGTAGAAGACCACGAAGACGGTCTTCTCGGTaGGCCGGCTCACGAAACAGTCGACCGTGTGCGGACAAGGTGGCC	+
Preference number: 5 (lower is better) Translates to: AARRRSRRPRRRSSR*AGSRNSRPCADKVA Trigger: GGCCACCTTGTCCGCACACGGTCGACTGTTTCGTGAGCCGGCCCACCGAGAAGACCGTCTTCGTGGTCTTCTACTTCGCCGTCGGGCTGC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS GCA 72 bp	GCCTCGGCACGCCCGCGCGCGCACGGCGGGGCCAGCTaGGCACCACCCGCCTCCTTGCTGGCCTGGTGCATG	+
Preference number: 6 (lower is better) Translates to: ASARPRAHGGAS*APPASLLAWCM Trigger: CATGCACCAGGCCAGCAAGGAGGCGGGTGGTGCGCAGCTGGCCCCGCCGTGCGCGCGCGGGCGTGCCGAGGC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS TCA 72 bp	GCCGCTGCCGCCTTCGCCCTCGCTGTCGCCTGCCGGTaGGCGGTGCGCGTAGGCTGGCGGGCCGAAAGGGTC	+
Preference number: 6 (lower is better) Translates to: AAAAFALAVACR*AVRVGWRAERV Trigger: GACCCTTTCGGCCCGCCAGCCTACGCGCACCGCTCACCGGCAGGCGACAGCGAGGGCGAAGGCGGCAGCGGC 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS CCA 72 bp	AGGTCCTGGCGCACGGTAGCCAGCGACGCTTTGCTGTaGCCGCTGCCGCCTTCGCCCTCGCTGTCGCCTGCC	+
Preference number: 6 (lower is better) Translates to: RSWRTVASDALL*PLPPSPSLSPA Trigger: GGCAGGCGACAGCGAGGGCGAAGGCGGCAGCGGCCACAGCAAAGCGTCGCTGGCTACCGTGCGCCAGGACCT 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS TCA 72 bp	AGCAGCTTGGCGCGCTGGCGACCCTTCCAGAGCAGGTaGCCCAGCTCCGCCACGCTGAGCAGCGCCGACAGC	+
Preference number: 6 (lower is better) Translates to: SSLARWRPFQSR*PSSATLSSADS Trigger: GCTGTCGGCGCTGCTCAGCGTGGCGGAGCTGGGTCACCTGCTCTGGAAGGGTCGCCAGCGCGCCAAGCTGCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS CAA 72 bp	ATGGCCAGGTCCTGGCGCACGGTAGCCAGCGACGCTTaGCTGTGGCCGCTGCCGCCTTCGCCCTCGCTGTCG	+
Preference number: 6 (lower is better) Translates to: MARSWRTVASDA*LWPLPPSPSLS Trigger: CGACAGCGAGGGCGAAGGCGGCAGCGGCCACAGCAAAGCGTCGCTGGCTACCGTGCGCCAGGACCTGGCCAT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS CCA 72 bp	CCGGCTCACGAAACAGTCGACCGTGTGCGGACAAGGTaGCCCGGCGCACGCGTAGTGCGGGTCCACGCGGAA	+
Preference number: 6 (lower is better) Translates to: PAHETVDRVRTR*PGARVVRVHAE Trigger: TTCCGCGTGGACCCGCACTACGCGTGCGCCGGGCCACCTTGTCCGCACACGGTCGACTGTTTCGTGAGCCGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS GCA 72 bp	ACCAGCCAGAGACGACCCACGAGCGGCGACTGTAGCTaGACCGCGTCCAGCAGGGAGCCTAGGAACGCCCAC	+
Preference number: 6 (lower is better) Translates to: TSQRRPTSGDCS*TASSREPRNAH Trigger: GTGGGCGTTCCTAGGCTCCCTGCTGGACGCGGTGCAGCTACAGTCGCCGCTCGTGGGTCGTCTCTGGCTGGT 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS TCA 72 bp	CACCCGCCTCCTTGCTGGCCTGGTGCATGGAGTAGATaGCGAACAGCACCGGCGGCGCCGACAGCAGCAGGA	+
Preference number: 6 (lower is better) Translates to: HPPPCWPGAWSR*RTAPAAPTAAG Trigger: TCCTGCTGCTGTCGGCGCCGCCGGTGCTGTTCGTCATCTACTCCATGCACCAGGCCAGCAAGGAGGCGGGTG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2
CDS CCA 72 bp	CGGCGAAGTAGAAGACCACGAAGACGGTCTTCTCGGTaGGCCGGCTCACGAAACAGTCGACCGTGTGCGGAC	+
Preference number: 6 (lower is better) Translates to: RRSRRPRRRSSR*AGSRNSRPCAD Trigger: GTCCGCACACGGTCGACTGTTTCGTGAGCCGGCCCACCGAGAAGACCGTCTTCGTGGTCTTCTACTTCGCCG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062931.2

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