Pregenerated sensors for GJB6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040055Ensembl transcript IDs: ENSMUST00000039380.9, ENSMUST00000160703.2
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GCTTGGTTTTCAGAGATAGACCACAATTTTGACTTATATTGTGTATaGACAGCTCAGGTGTTCTACAATAATCGAACTCAAGTATCCACT | + |
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Preference number: 1 (lower is better) Translates to: AWFSEIDHNFDLYCV*TAQVFYNNRTQVST Trigger: AGTGGATACTTGAGTTCGATTATTGTAGAACACCTGAGCTGTTCATACACAATATAAGTCAAAATTGTGGTCTATCTCTGAAAACCAAGC 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| 3UTR-3UTR CCA 90 bp | GCACTGTTCACCATAGGTGGAAAGGCTCATTTTAAAAAGGGTCCCACTTCCTTCCAAACTTTAGATACTTaGGGTGCACTTGTAAAGCTA | + |
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Preference number: 2 (lower is better) Translates to: ALFTIGGKAHFKKGPTSFQTLDT*GALVKL Trigger: TAGCTTTACAAGTGCACCCCAAGTATCTAAAGTTTG...GAAGGAAGTGGGACCCTTTTTAAAATGAGCCTTTCCACCTATGGTGAACAGTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| 3UTR-3UTR CAA 90 bp | CTTCGATTCCATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACAGACCTAGAGGAGGAGTaGTCAGATCAATGTTGTCTA | + |
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Preference number: 3 (lower is better) Translates to: LRFHSYSAIGNVYCPMNTDLEEE*SDQCCL Trigger: TAGACAACATTGATCTGACAACTCCTCCTCTAGGTC...TGTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATGGAATCGAAG 40% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| 3UTR-3UTR CAA 90 bp | TCGATTCCATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACATCGTTGTCAGATCAATGTaGTCTACAAAGAGGGTACAT | + |
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Preference number: 3 (lower is better) Translates to: SIPFIFSNRQCILSNEHIVVRSM*STKRVH Trigger: ATGTACCCTCTTTGTAGACAACATTGATCTGACAAC...GATGTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATGGAATCGA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| 3UTR TCA 72 bp | TCAGAGATAGACCACAATTTTGACTTATATTGTGTATaGACAGCTCAGGTGTTCTACAATAATCGAACTCAA | + |
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Preference number: 3 (lower is better) Translates to: SEIDHNFDLYCV*TAQVFYNNRTQ Trigger: TTGAGTTCGATTATTGTAGAACACCTGAGCTGTTCATACACAATATAAGTCAAAATTGTGGTCTATCTCTGA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| 3UTR CCA 72 bp | CTGCTAGACCCTTTACAAGTTCAAACTTTAGATACTTaGGGTGCACTTGTAAAGCTAACTTTGTATATTTTT | + |
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Preference number: 3 (lower is better) Translates to: LLDPLQVQTLDT*GALVKLTLYIF Trigger: AAAAATATACAAAGTTAGCTTTACAAGTGCACCCCAAGTATCTAAAGTTTGAACTTGTAAAGGGTCTAGCAG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR CCA 90 bp | AGTTGTCAGATCAATGTTGTCTACAAAGAGGGTACATGCTCAGAAGGGCTCACCAGTAGGCCACGTGCATaGCCACCAACAGGGCTGGGG | + |
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Preference number: 4 (lower is better) Translates to: SCQINVVYKEGTCSEGLTSRPRA*PPTGLG Trigger: CCCCAGCCCTGTTGGTGGCCATGCACGTGGCCTACT...GGTGAGCCCTTCTGAGCATGTACCCTCTTTGTAGACAACATTGATCTGACAACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR CCA 90 bp | GCACTGTTCACCATAGGTGGAAAGGCTCATTTTAAAAAGGGTCCCACTTCCTTCGACGTTCTTGCACCCTaGCTGCAGAGTGTTGCAGAC | + |
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Preference number: 4 (lower is better) Translates to: ALFTIGGKAHFKKGPTSFDVLAP*LQSVAD Trigger: GTCTGCAACACTCTGCAGCCAGGGTGCAAGAACGTC...GAAGGAAGTGGGACCCTTTTTAAAATGAGCCTTTCCACCTATGGTGAACAGTGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR GCA 90 bp | CCTTCGATTCCATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACGACACAAAGATCAGCTaGAGGGCCCAGAGCCGGATG | + |
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Preference number: 4 (lower is better) Translates to: PSIPFIFSNRQCILSNEHDTKIS*RAQSRM Trigger: CATCCGGCTCTGGGCCCTGCAGCTGATCTTTGTGTC...GTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATGGAATCGAAGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR CCA 90 bp | TCGATTCCATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACATCAGCAGTCCACGAGATTaGGGCAGGGGTCAATGCCAC | + |
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Preference number: 4 (lower is better) Translates to: SIPFIFSNRQCILSNEHISSPRD*GRGQCH Trigger: GTGGCATTGACCCCTGCCCCAATCTCGTGGACTGCT...GATGTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATGGAATCGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR CCA 90 bp | CATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACATCCCACCTTAGGGCATGGTTGGGGTaGTTTCTCTGCGCCTGTGTT | + |
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Preference number: 4 (lower is better) Translates to: HSYSAIGNVYCPMNTSHLRAWLG*FLCACV Trigger: AACACAGGCGCAGAGAAACCACCCCAACCATGCCCT...AAGGTGGGATGTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR CCA 90 bp | AGTTGTCAGATCAATGTTGTCTACAAAGAGGGTACATGCTCAGAAGGGCTCACCCTTGTGATTGCATTCTaGCCACTATCTGAGATCAGC | + |
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Preference number: 4 (lower is better) Translates to: SCQINVVYKEGTCSEGLTLVIAF*PLSEIS Trigger: GCTGATCTCAGATAGTGGCCAGAATGCAATCACAAG...GGTGAGCCCTTCTGAGCATGTACCCTCTTTGTAGACAACATTGATCTGACAACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR TCA 90 bp | CGATTCCATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACATCCAGGCGGCTTCGAAGATaGTGCGGAAGAAAATGCTGC | + |
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Preference number: 4 (lower is better) Translates to: RFHSYSAIGNVYCPMNTSRRLRR*CGRKCC Trigger: GCAGCATTTTCTTCCGCATCATCTTCGAAGCCGCCT...GGATGTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATGGAATCG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR TCA 90 bp | CGATTCCATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACATCCACAACTCGGCCACATTaGGCAGCATGCAAATCACGG | + |
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Preference number: 4 (lower is better) Translates to: RFHSYSAIGNVYCPMNTSTTRPH*AACKSR Trigger: CCGTGATTTGCATGCTGCTCAATGTGGCCGAGTTGT...GGATGTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATGGAATCG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR GCA 90 bp | CCTTCGATTCCATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACCATAGCAGACGTTCTTaGACCCTGGCTGCAGAGTGT | + |
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Preference number: 4 (lower is better) Translates to: PSIPFIFSNRQCILSNEHHSRRS*TLAAEC Trigger: ACACTCTGCAGCCAGGGTGCAAGAACGTCTGCTATG...GTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATGGAATCGAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR GCA 90 bp | CTTCGATTCCATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACATGGGGCAGGGGTCAATaGCACATTTCAGTACCCAGG | + |
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Preference number: 4 (lower is better) Translates to: LRFHSYSAIGNVYCPMNTWGRGQ*HISVPR Trigger: CCTGGGTACTGAAATGTGGCATTGACCCCTGCCCCA...TGTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATGGAATCGAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR CCA 90 bp | TCGATTCCATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACATCGGCCACCAACAGGGCTaGGGTAGACACAAAGATCAG | + |
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Preference number: 4 (lower is better) Translates to: SIPFIFSNRQCILSNEHIGHQQG*GRHKDQ Trigger: CTGATCTTTGTGTCTACCCCAGCCCTGTTGGTGGCC...GATGTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATGGAATCGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR GCA 90 bp | CATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACATCCCACCTTTTCTTGCACCCTGGCTaGAGAGTGTTGCAGACAAAG | + |
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Preference number: 4 (lower is better) Translates to: HSYSAIGNVYCPMNTSHLFLHPG*RVLQTK Trigger: CTTTGTCTGCAACACTCTGCAGCCAGGGTGCAAGAA...AAGGTGGGATGTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR GCA 90 bp | CATTCATATTCAGCAATCGGCAATGTATATTGTCCAATGAACACATCCCACCTTTGCGGAAGAAAATGCTaGTGGTGTACGTCCACCACA | + |
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Preference number: 4 (lower is better) Translates to: HSYSAIGNVYCPMNTSHLCGRKC*WCTSTT Trigger: TGTGGTGGACGTACACCAGCAGCATTTTCTTCCGCA...AAGGTGGGATGTGTTCATTGGACAATATACATTGCCGATTGCTGAATATGAATG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR GCA 90 bp | AGTTGTCAGATCAATGTTGTCTACAAAGAGGGTACATGCTCAGAAGGGCTCACCCATGCAAATCACGGATaGGGAAATCATAAAAACAGT | + |
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Preference number: 4 (lower is better) Translates to: SCQINVVYKEGTCSEGLTHANHG*GNHKNS Trigger: ACTGTTTTTATGATTTCCGCATCCGTGATTTGCATG...GGTGAGCCCTTCTGAGCATGTACCCTCTTTGTAGACAACATTGATCTGACAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| 3UTR CAA 72 bp | GTCACTTATAGACAAACTCTTGACCTAGAGGAGGAGTaGTCAGATCAATGTTGTCTACAAAGAGGGTACATG | + |
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Preference number: 4 (lower is better) Translates to: VTYRQTLDLEEE*SDQCCLQRGYM Trigger: CATGTACCCTCTTTGTAGACAACATTGATCTGACAACTCCTCCTCTAGGTCAAGAGTTTGTCTATAAGTGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS GCA 90 bp | AAAATAAAGATGACCGTGATCCACACCTTCCCTATGCTGGTAGAGTaGTTGTTCACGCCACCGATGACGGTGTGCAGGGTCCCCCAGTCC | + |
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Preference number: 5 (lower is better) Translates to: KIKMTVIHTFPMLVE*LFTPPMTVCRVPQS Trigger: GGACTGGGGGACCCTGCACACCGTCATCGGTGGCGTGAACAAGCACTCTACCAGCATAGGGAAGGTGTGGATCACGGTCATCTTTATTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000039380.9 ENSMUST00000160703.2 |
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| CDS-3UTR CAA 90 bp | AGTTGTCAGATCAATGTTGTCTACAAAGAGGGTACATGCTCAGAAGGGCTCACCCACAACTCGGCCACATaGAGCAGCATGCAAATCACG | + |
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Preference number: 5 (lower is better) Translates to: SCQINVVYKEGTCSEGLTHNSAT*SSMQIT Trigger: CGTGATTTGCATGCTGCTCAATGTGGCCGAGTTGTG...GGTGAGCCCTTCTGAGCATGTACCCTCTTTGTAGACAACATTGATCTGACAACT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS CCA 90 bp | GAGATCAGCTCATTCATTTCATTCTGCTTGCTCTCTTTCAGGGCATaGTTGGGGTGGTTTCTCTGCGCCTGTGTTCTTTTGGATCTCCTA | + |
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Preference number: 5 (lower is better) Translates to: EISSFISFCLLSFRA*LGWFLCACVLLDLL Trigger: TAGGAGATCCAAAAGAACACAGGCGCAGAGAAACCACCCCAACCATGCCCTGAAAGAGAGCAAGCAGAATGAAATGAATGAGCTGATCTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR CAA 90 bp | GCACTGTTCACCATAGGTGGAAAGGCTCATTTTAAAAAGGGTCCCACTTCCTTCTGCGCCTGTGTTCTTTaGGATCTCCTAAAGCACAAT | + |
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Preference number: 5 (lower is better) Translates to: ALFTIGGKAHFKKGPTSFCACVL*DLLKHN Trigger: ATTGTGCTTTAGGAGATCCAAAAGAACACAGGCGCA...GAAGGAAGTGGGACCCTTTTTAAAATGAGCCTTTCCACCTATGGTGAACAGTGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS-3UTR CAA 90 bp | GAGTTGTCAGATCAATGTTGTCTACAAAGAGGGTACATGCTCAGAAGGGCTCACTTCATTTCATTCTGCTaGCTCTCTTTCAGGGCATGG | + |
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Preference number: 5 (lower is better) Translates to: ELSDQCCLQRGYMLRRAHFISFC*LSFRAW Trigger: CCATGCCCTGAAAGAGAGCAAGCAGAATGAAATGAA...GTGAGCCCTTCTGAGCATGTACCCTCTTTGTAGACAACATTGATCTGACAACTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS CAA 72 bp | ACCGTGATCCACACCTTCCCTATGCTGGTAGAGTGCTaGTTCACGCCACCGATGACGGTGTGCAGGGTCCCC | + |
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Preference number: 6 (lower is better) Translates to: TVIHTFPMLVEC*FTPPMTVCRVP Trigger: GGGGACCCTGCACACCGTCATCGGTGGCGTGAACAAGCACTCTACCAGCATAGGGAAGGTGTGGATCACGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039380.9 ENSMUST00000160703.2 |
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| CDS GCA 72 bp | ATGACCGTGATCCACACCTTCCCTATGCTGGTAGAGTaGTTGTTCACGCCACCGATGACGGTGTGCAGGGTC | + |
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Preference number: 6 (lower is better) Translates to: MTVIHTFPMLVE*LFTPPMTVCRV Trigger: GACCCTGCACACCGTCATCGGTGGCGTGAACAAGCACTCTACCAGCATAGGGAAGGTGTGGATCACGGTCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039380.9 ENSMUST00000160703.2 |
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| CDS CAA 72 bp | CACCACAGGGAGCCCTCAATGCGCACCTTCTGCCGTTaGATGTCCTCCAGGTCTTTAAACTCGTTTCTCTTC | + |
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Preference number: 6 (lower is better) Translates to: HHREPSMRTFCR*MSSRSLNSFLF Trigger: GAAGAGAAACGAGTTTAAAGACCTGGAGGACATCAAACGGCAGAAGGTGCGCATTGAGGGCTCCCTGTGGTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000039380.9 ENSMUST00000160703.2 |
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| CDS CCA 72 bp | TCATTTCATTCTGCTTGCTCTCTTTCAGGGCATGGTTaGGGTGGTTTCTCTGCGCCTGTGTTCTTTTGGATC | + |
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Preference number: 6 (lower is better) Translates to: SFHSACSLSGHG*GGFSAPVFFWI Trigger: GATCCAAAAGAACACAGGCGCAGAGAAACCACCCCAACCATGCCCTGAAAGAGAGCAAGCAGAATGAAATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS CAA 90 bp | ATCAGCTCATTCATTTCATTCTGCTTGCTCTCTTTCAGGGCATGGTaGGGGTGGTTTCTCTGCGCCTGTGTTCTTTTGGATCTCCTAAAG | + |
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Preference number: 6 (lower is better) Translates to: ISSFISFCLLSFRAW*GWFLCACVLLDLLK Trigger: CTTTAGGAGATCCAAAAGAACACAGGCGCAGAGAAACCACCCCAACCATGCCCTGAAAGAGAGCAAGCAGAATGAAATGAATGAGCTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS CCA 72 bp | TCATTCATTTCATTCTGCTTGCTCTCTTTCAGGGCATaGTTGGGGTGGTTTCTCTGCGCCTGTGTTCTTTTG | + |
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Preference number: 6 (lower is better) Translates to: SFISFCLLSFRA*LGWFLCACVLL Trigger: CAAAAGAACACAGGCGCAGAGAAACCACCCCAACCATGCCCTGAAAGAGAGCAAGCAGAATGAAATGAATGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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| CDS CAA 72 bp | TTCATTTCATTCTGCTTGCTCTCTTTCAGGGCATGGTaGGGGTGGTTTCTCTGCGCCTGTGTTCTTTTGGAT | + |
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Preference number: 6 (lower is better) Translates to: FISFCLLSFRAW*GWFLCACVLLD Trigger: ATCCAAAAGAACACAGGCGCAGAGAAACCACCCCAACCATGCCCTGAAAGAGAGCAAGCAGAATGAAATGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000039380.9 |
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