Pregenerated sensors for GJB2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000046352Ensembl transcript IDs: ENSMUST00000055698.8
Found 48 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TCCTCAGAGGAAGAGAAACAATGTGAGATCCCTTTGTTTAAACTGTaGATGTATCCTCCAAGCTTGGTCGCTACCAGCACGGGGTCTCAG | + |
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Preference number: 1 (lower is better) Translates to: SSEEEKQCEIPLFKL*MYPPSLVATSTGSQ Trigger: CTGAGACCCCGTGCTGGTAGCGACCAAGCTTGGAGGATACATTCACAGTTTAAACAAAGGGATCTCACATTGTTTCTCTTCCTCTGAGGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR CCA 90 bp | AATGTGAGATCCCTTTGTTTAAACTGTGAATGTATCCTCCAAGCTTaGTCGCTACCAGCACGGGGTCTCAGTGGAACTAACTTTAGAACC | + |
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Preference number: 1 (lower is better) Translates to: NVRSLCLNCECILQA*SLPARGLSGTNFRT Trigger: GGTTCTAAAGTTAGTTCCACTGAGACCCCGTGCTGGTAGCGACCAAGCTTGGAGGATACATTCACAGTTTAAACAAAGGGATCTCACATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR TCA 90 bp | CCAATGACATTCTTGGCAGGAAGAAGTGTCCCCTGTTGGATTTGTTaGCTGTCATCTTGTAGGATACACATAAGGCATAGTGGTAATGGT | + |
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Preference number: 1 (lower is better) Translates to: PMTFLAGRSVPCWIC*LSSCRIHIRHSGNG Trigger: ACCATTACCACTATGCCTTATGTGTATCCTACAAGATGACAGTCAACAAATCCAACAGGGGACACTTCTTCCTGCCAAGAATGTCATTGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR TCA 90 bp | GTTTTAATCAACAGGATTGGGAGTCTAGAAGTTTCATTGGTTCTCTaGAAACCACCCCATTTGGTTTCTGCACCATTGAATTGTCCCATG | + |
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Preference number: 1 (lower is better) Translates to: VLINRIGSLEVSLVL*KPPHLVSAPLNCPM Trigger: CATGGGACAATTCAATGGTGCAGAAACCAAATGGGGTGGTTTTCAGAGAACCAATGAAACTTCTAGACTCCCAATCCTGTTGATTAAAAC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR TCA 90 bp | CATGAAACCACAACTCTTATTTATTGTTACAAAATGGCTTTCCAATaGCATTCTTGGCAGGAAGAAGTGTCCCCTGTTGGATTTGTTGAC | + |
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Preference number: 1 (lower is better) Translates to: HETTTLIYCYKMAFQ*HSWQEEVSPVGFVD Trigger: GTCAACAAATCCAACAGGGGACACTTCTTCCTGCCAAGAATGTCATTGGAAAGCCATTTTGTAACAATAAATAAGAGTTGTGGTTTCATG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR TCA 90 bp | AGGCATAGTGGTAATGGTTCAACTTGCCCTAGAAAGGTTACATACTaGCCTAAACTAGTTTCTTCTATTTCTTCCAAATATCCACATTTC | + |
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Preference number: 1 (lower is better) Translates to: RHSGNGSTCPRKVTY*PKLVSSISSKYPHF Trigger: GAAATGTGGATATTTGGAAGAAATAGAAGAAACTAGTTTAGGTCAGTATGTAACCTTTCTAGGGCAAGTTGAACCATTACCACTATGCCT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR CCA 90 bp | GGTTCTCTGAAAACCACCCCATTTGGTTTCTGCACCATTGAATTGTCCCATGGCGGGGGACTTTCTCAGTaGCACCTTCCTCAGGACCGG | + |
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Preference number: 2 (lower is better) Translates to: GSLKTTPFGFCTIELSHGGGLSQ*HLPQDR Trigger: CCGGTCCTGAGGAAGGTGCCACTGAGAAAGTCCCCC...GCCATGGGACAATTCAATGGTGCAGAAACCAAATGGGGTGGTTTTCAGAGAACC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR CCA 90 bp | GTGAATGTATCCTCCAAGCTTGGTCGCTACCAGCACGGGGTCTCAGTGGAACTAAATTGGGCCTTTGTTTaGGAGCTTTGGGGGAAGGGA | + |
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Preference number: 2 (lower is better) Translates to: VNVSSKLGRYQHGVSVELNWAFV*ELWGKG Trigger: TCCCTTCCCCCAAAGCTCCCAAACAAAGGCCCAATT...TAGTTCCACTGAGACCCCGTGCTGGTAGCGACCAAGCTTGGAGGATACATTCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR CCA 90 bp | AAATTACAGTTGACTATTTTAATTGAGGCCTCTTCTTGTCAGAAGCCAGCACGATTTGTTTGGGAGCTTTaGGGGAAGGGAGGCCCACGG | + |
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Preference number: 2 (lower is better) Translates to: KLQLTILIEASSCQKPARFVWEL*GKGGPR Trigger: CCGTGGGCCTCCCTTCCCCCAAAGCTCCCAAACAAA...TCGTGCTGGCTTCTGACAAGAAGAGGCCTCAATTAAAATAGTCAACTGTAATTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR GCA 90 bp | CAACAGGATTGGGAGTCTAGAAGTTTCATTGGTTCTCTGAAAACCACCCCATTTTCTGGTTACACACCATaGTCACTTCACACACTGAAC | + |
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Preference number: 2 (lower is better) Translates to: QQDWESRSFIGSLKTTPFSGYTP*SLHTLN Trigger: GTTCAGTGTGTGAAGTGAGCATGGTGTGTAACCAGA...AAATGGGGTGGTTTTCAGAGAACCAATGAAACTTCTAGACTCCCAATCCTGTTG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR TCA 90 bp | CACAACTCTTATTTATTGTTACAAAATGGCTTTCCAATGACATTCTTGGCAGGAGCTCACTTCACACACTaGACCTCTGGACTAGGAGGA | + |
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Preference number: 2 (lower is better) Translates to: HNSYLLLQNGFPMTFLAGAHFTH*TSGLGG Trigger: TCCTCCTAGTCCAGAGGTTCAGTGTGTGAAGTGAGC...TCCTGCCAAGAATGTCATTGGAAAGCCATTTTGTAACAATAAATAAGAGTTGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR CCA 90 bp | TGGGAGTCTAGAAGTTTCATTGGTTCTCTGAAAACCACCCCATTTGGTTTCTGCAGGGACTTCAAATGGTaGCATTTTAGATGGGAATGT | + |
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Preference number: 2 (lower is better) Translates to: WESRSFIGSLKTTPFGFCRDFKW*HFRWEC Trigger: ACATTCCCATCTAAAATGCCACCATTTGAAGTCCCT...GCAGAAACCAAATGGGGTGGTTTTCAGAGAACCAATGAAACTTCTAGACTCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR CCA 90 bp | CAACAGGATTGGGAGTCTAGAAGTTTCATTGGTTCTCTGAAAACCACCCCATTTTCCAGGGACTTCAAATaGTGGCATTTTAGATGGGAA | + |
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Preference number: 2 (lower is better) Translates to: QQDWESRSFIGSLKTTPFSRDFK*WHFRWE Trigger: TTCCCATCTAAAATGCCACCATTTGAAGTCCCTGGA...AAATGGGGTGGTTTTCAGAGAACCAATGAAACTTCTAGACTCCCAATCCTGTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR TCA 90 bp | CAACAGGATTGGGAGTCTAGAAGTTTCATTGGTTCTCTGAAAACCACCCCATTTGTTGACTATTTTAATTaGGGCCTCTTCTTGTCAGAA | + |
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Preference number: 2 (lower is better) Translates to: QQDWESRSFIGSLKTTPFVDYFN*GLFLSE Trigger: TTCTGACAAGAAGAGGCCTCAATTAAAATAGTCAAC...AAATGGGGTGGTTTTCAGAGAACCAATGAAACTTCTAGACTCCCAATCCTGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR GCA 90 bp | CACAACTCTTATTTATTGTTACAAAATGGCTTTCCAATGACATTCTTGGCAGGATCTTCTGATGCTGACTaGAACATCCCACAGCTACAG | + |
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Preference number: 2 (lower is better) Translates to: HNSYLLLQNGFPMTFLAGSSDAD*NIPQLQ Trigger: CTGTAGCTGTGGGATGTTGCAGTCAGCATCAGAAGA...TCCTGCCAAGAATGTCATTGGAAAGCCATTTTGTAACAATAAATAAGAGTTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR TCA 90 bp | CACAACTCTTATTTATTGTTACAAAATGGCTTTCCAATGACATTCTTGGCAGGAGTTTCATTGGTTCTCTaGAAACCACCCCATTTGGTT | + |
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Preference number: 2 (lower is better) Translates to: HNSYLLLQNGFPMTFLAGVSLVL*KPPHLV Trigger: AACCAAATGGGGTGGTTTTCAGAGAACCAATGAAAC...TCCTGCCAAGAATGTCATTGGAAAGCCATTTTGTAACAATAAATAAGAGTTGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR GCA 90 bp | CACAACTCTTATTTATTGTTACAAAATGGCTTTCCAATGACATTCTTGGCAGGAACCCCATTTGGTTTCTaGACCATTGAATTGTCCCAT | + |
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Preference number: 2 (lower is better) Translates to: HNSYLLLQNGFPMTFLAGTPFGF*TIELSH Trigger: ATGGGACAATTCAATGGTGCAGAAACCAAATGGGGT...TCCTGCCAAGAATGTCATTGGAAAGCCATTTTGTAACAATAAATAAGAGTTGTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR CAA 90 bp | CCTTCCTCAGGACCGGGTTCCTCTCTCCTGTCCTCAGAGGAAGAGAAACAATGTAATACAGGCATAGAATaGGGCCTTTGTTTGGGAGCT | + |
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Preference number: 3 (lower is better) Translates to: PSSGPGSSLLSSEEEKQCNTGIE*GLCLGA Trigger: AGCTCCCAAACAAAGGCCCAATTCTATGCCTGTATT...ACATTGTTTCTCTTCCTCTGAGGACAGGAGAGAGGAACCCGGTCCTGAGGAAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR GCA 72 bp | CATCTTAAAGACCCTGTGAGATCTGGTTACACACCATaGTCACTTCACACACTGAACCTCTGGACTAGGAGG | + |
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Preference number: 3 (lower is better) Translates to: HLKDPVRSGYTP*SLHTLNLWTRR Trigger: CCTCCTAGTCCAGAGGTTCAGTGTGTGAAGTGAGCATGGTGTGTAACCAGATCTCACAGGGTCTTTAAGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR CCA 72 bp | TTCAAATGGTGGCATTTTAGATGGGAATGTTTGTCTTaGGAACTGCTGGTGGCTGAGCTCTGCCGACTAAGC | + |
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Preference number: 3 (lower is better) Translates to: FKWWHFRWECLS*ELLVAELCRLS Trigger: GCTTAGTCGGCAGAGCTCAGCCACCAGCAGTTCCCAAGACAAACATTCCCATCTAAAATGCCACCATTTGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR CCA 72 bp | TCCCTTTGTTTAAACTGTGAATGTATCCTCCAAGCTTaGTCGCTACCAGCACGGGGTCTCAGTGGAACTAAC | + |
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Preference number: 3 (lower is better) Translates to: SLCLNCECILQA*SLPARGLSGTN Trigger: GTTAGTTCCACTGAGACCCCGTGCTGGTAGCGACCAAGCTTGGAGGATACATTCACAGTTTAAACAAAGGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR CAA 90 bp | GGTGGCAGTTGTCGGCATATCCTATCTGTCTCTTACACAAAATTACAGTTGACTGAATTGGGCCTTTGTTaGGGAGCTTTGGGGGAAGGG | + |
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Preference number: 3 (lower is better) Translates to: GGSCRHILSVSYTKLQLTELGLC*GALGEG Trigger: CCCTTCCCCCAAAGCTCCCAAACAAAGGCCCAATTC...AGTCAACTGTAATTTTGTGTAAGAGACAGATAGGATATGCCGACAACTGCCACC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR GCA 72 bp | AGCAAACCCATGAAGTCCCTATCTTCTGATGCTGACTaGAACATCCCACAGCTACAGAGTAGACAAACTGGT | + |
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Preference number: 3 (lower is better) Translates to: SKPMKSLSSDAD*NIPQLQSRQTG Trigger: ACCAGTTTGTCTACTCTGTAGCTGTGGGATGTTGCAGTCAGCATCAGAAGATAGGGACTTCATGGGTTTGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR CAA 90 bp | CACAACTCTTATTTATTGTTACAAAATGGCTTTCCAATGACATTCTTGGCAGGAGCGACTAAGCATGGGTaGCCTCATCCTCTCCCTCCA | + |
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Preference number: 3 (lower is better) Translates to: HNSYLLLQNGFPMTFLAGATKHG*PHPLPP Trigger: TGGAGGGAGAGGATGAGGCAACCCATGCTTAGTCGC...TCCTGCCAAGAATGTCATTGGAAAGCCATTTTGTAACAATAAATAAGAGTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR TCA 72 bp | GAAGAGAAACAATGTGAGATCCCTTTGTTTAAACTGTaGATGTATCCTCCAAGCTTGGTCGCTACCAGCACG | + |
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Preference number: 3 (lower is better) Translates to: EEKQCEIPLFKL*MYPPSLVATST Trigger: CGTGCTGGTAGCGACCAAGCTTGGAGGATACATTCACAGTTTAAACAAAGGGATCTCACATTGTTTCTCTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR GCA 72 bp | TTCATTGGTTCTCTGAAAACCACCCCATTTGGTTTCTaGACCATTGAATTGTCCCATGGCAGTGAAATTCCC | + |
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Preference number: 3 (lower is better) Translates to: FIGSLKTTPFGF*TIELSHGSEIP Trigger: GGGAATTTCACTGCCATGGGACAATTCAATGGTGCAGAAACCAAATGGGGTGGTTTTCAGAGAACCAATGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR TCA 72 bp | TTCTTGGCAGGAAGAAGTGTCCCCTGTTGGATTTGTTaGCTGTCATCTTGTAGGATACACATAAGGCATAGT | + |
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Preference number: 3 (lower is better) Translates to: FLAGRSVPCWIC*LSSCRIHIRHS Trigger: ACTATGCCTTATGTGTATCCTACAAGATGACAGTCAACAAATCCAACAGGGGACACTTCTTCCTGCCAAGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR-3UTR CAA 90 bp | CACAACTCTTATTTATTGTTACAAAATGGCTTTCCAATGACATTCTTGGCAGGACATAGAATTGGGCCTTaGTTTGGGAGCTTTGGGGGA | + |
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Preference number: 3 (lower is better) Translates to: HNSYLLLQNGFPMTFLAGHRIGP*FGSFGG Trigger: TCCCCCAAAGCTCCCAAACAAAGGCCCAATTCTATG...TCCTGCCAAGAATGTCATTGGAAAGCCATTTTGTAACAATAAATAAGAGTTGTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR TCA 72 bp | ACAACTCTTATTTATTGTTACAAAATGGCTTTCCAATaGCATTCTTGGCAGGAAGAAGTGTCCCCTGTTGGA | + |
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Preference number: 3 (lower is better) Translates to: TTLIYCYKMAFQ*HSWQEEVSPVG Trigger: TCCAACAGGGGACACTTCTTCCTGCCAAGAATGTCATTGGAAAGCCATTTTGTAACAATAAATAAGAGTTGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR TCA 72 bp | GGTAATGGTTCAACTTGCCCTAGAAAGGTTACATACTaGCCTAAACTAGTTTCTTCTATTTCTTCCAAATAT | + |
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Preference number: 3 (lower is better) Translates to: GNGSTCPRKVTY*PKLVSSISSKY Trigger: ATATTTGGAAGAAATAGAAGAAACTAGTTTAGGTCAGTATGTAACCTTTCTAGGGCAAGTTGAACCATTACC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR CCA 90 bp | CCTTCCTCAGGACCGGGTTCCTCTCTCCTGTCCTCAGAGGAAGAGAAACAATGTAGCAGTCCACTGTATTaGGGCAGGGCCAAGCGTTGC | + |
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Preference number: 4 (lower is better) Translates to: PSSGPGSSLLSSEEEKQCSSPLY*GRAKRC Trigger: GCAACGCTTGGCCCTGCCCCAATACAGTGGACTGCT...ACATTGTTTCTCTTCCTCTGAGGACAGGAGAGAGGAACCCGGTCCTGAGGAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR CCA 90 bp | GTGAATGTATCCTCCAAGCTTGGTCGCTACCAGCACGGGGTCTCAGTGGAACTACCCGGAAGAAGATGCTaGTGGTGTAGGTCCACCACA | + |
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Preference number: 4 (lower is better) Translates to: VNVSSKLGRYQHGVSVELPGRRC*WCRSTT Trigger: TGTGGTGGACCTACACCACCAGCATCTTCTTCCGGG...TAGTTCCACTGAGACCCCGTGCTGGTAGCGACCAAGCTTGGAGGATACATTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR TCA 90 bp | TGGGAGTCTAGAAGTTTCATTGGTTCTCTGAAAACCACCCCATTTGGTTTCTGCCTGGCGTGGACACCATaGTCAGCTGCAGAGCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: WESRSFIGSLKTTPFGFCLAWTP*SAAEPR Trigger: TCTGGGCTCTGCAGCTGATCATGGTGTCCACGCCAG...GCAGAAACCAAATGGGGTGGTTTTCAGAGAACCAATGAAACTTCTAGACTCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR GCA 90 bp | CCAGGGACTTCAAATGGTGGCATTTTAGATGGGAATGTTTGTCTTGGGAACTGCGACACCATGATCAGCTaGAGAGCCCAGAGCCGGATG | + |
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Preference number: 4 (lower is better) Translates to: PGTSNGGILDGNVCLGNCDTMIS*RAQSRM Trigger: CATCCGGCTCTGGGCTCTGCAGCTGATCATGGTGTC...GCAGTTCCCAAGACAAACATTCCCATCTAAAATGCCACCATTTGAAGTCCCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR GCA 90 bp | CCAGGGACTTCAAATGGTGGCATTTTAGATGGGAATGTTTGTCTTGGGAACTGCCGTAGCATACATTCTTaGAGCCAGGCTGGAGCGTGT | + |
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Preference number: 4 (lower is better) Translates to: PGTSNGGILDGNVCLGNCRSIHS*SQAGAC Trigger: ACACGCTCCAGCCTGGCTGCAAGAATGTATGCTACG...GCAGTTCCCAAGACAAACATTCCCATCTAAAATGCCACCATTTGAAGTCCCTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR GCA 90 bp | CAACAGGATTGGGAGTCTAGAAGTTTCATTGGTTCTCTGAAAACCACCCCATTTCAGACAAAATCGGCTTaGTCATCTCCCCACACCTCC | + |
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Preference number: 4 (lower is better) Translates to: QQDWESRSFIGSLKTTPFQTKSA*SSPHTS Trigger: GGAGGTGTGGGGAGATGAGCAAGCCGATTTTGTCTG...AAATGGGGTGGTTTTCAGAGAACCAATGAAACTTCTAGACTCCCAATCCTGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR CCA 90 bp | CCAGGGACTTCAAATGGTGGCATTTTAGATGGGAATGTTTGTCTTGGGAACTGCTCGATACGGACCTTCTaGGTTTTGATCTCTTCGATG | + |
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Preference number: 4 (lower is better) Translates to: PGTSNGGILDGNVCLGNCSIRTF*VLISSM Trigger: CATCGAAGAGATCAAAACCCAGAAGGTCCGTATCGA...GCAGTTCCCAAGACAAACATTCCCATCTAAAATGCCACCATTTGAAGTCCCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR CAA 72 bp | CTGAAAACCACCCCATTTGGTTTCTGCACCATTGAATaGTCCCATGGCAGTGAAATTCCCAAGCAAACCCAT | + |
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Preference number: 4 (lower is better) Translates to: LKTTPFGFCTIE*SHGSEIPKQTH Trigger: ATGGGTTTGCTTGGGAATTTCACTGCCATGGGACAATTCAATGGTGCAGAAACCAAATGGGGTGGTTTTCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR TCA 90 bp | AAATTACAGTTGACTATTTTAATTGAGGCCTCTTCTTGTCAGAAGCCAGCACGAAGACGGCTTCAAAGATaGCCCGGAAGAAGATGCTGG | + |
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Preference number: 4 (lower is better) Translates to: KLQLTILIEASSCQKPARRRLQR*PGRRCW Trigger: CCAGCATCTTCTTCCGGGTCATCTTTGAAGCCGTCT...TCGTGCTGGCTTCTGACAAGAAGAGGCCTCAATTAAAATAGTCAACTGTAATTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR CCA 90 bp | CACAACTCTTATTTATTGTTACAAAATGGCTTTCCAATGACATTCTTGGCAGGAGCCGGATGTGAGAGATaGGGAAGTGGTGGTCGTAGC | + |
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Preference number: 4 (lower is better) Translates to: HNSYLLLQNGFPMTFLAGAGCER*GSGGRS Trigger: GCTACGACCACCACTTCCCCATCTCTCACATCCGGC...TCCTGCCAAGAATGTCATTGGAAAGCCATTTTGTAACAATAAATAAGAGTTGTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR TCA 90 bp | CAACAGGATTGGGAGTCTAGAAGTTTCATTGGTTCTCTGAAAACCACCCCATTTTTATCTCTCCCTTCATaGACTTCCGTTTCTTTTCAT | + |
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Preference number: 4 (lower is better) Translates to: QQDWESRSFIGSLKTTPFLSLPS*TSVSFH Trigger: ATGAAAAGAAACGGAAGTTCATGAAGGGAGAGATAA...AAATGGGGTGGTTTTCAGAGAACCAATGAAACTTCTAGACTCCCAATCCTGTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR TCA 90 bp | GGTGGCAGTTGTCGGCATATCCTATCTGTCTCTTACACAAAATTACAGTTGACTAATAGCACAGCTCTGTaGTATTTAGCAGAATGCAAA | + |
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Preference number: 4 (lower is better) Translates to: GGSCRHILSVSYTKLQLTNSTAL*YLAECK Trigger: TTTGCATTCTGCTAAATATCACAGAGCTGTGCTATT...AGTCAACTGTAATTTTGTGTAAGAGACAGATAGGATATGCCGACAACTGCCACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| 3UTR CAA 72 bp | CGGCATATCCTATCTGTCTCTTACACAAAATTACAGTaGACTATTTTAATTGAGGCCTCTTCTTGTCAGAAG | + |
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Preference number: 4 (lower is better) Translates to: RHILSVSYTKLQ*TILIEASSCQK Trigger: CTTCTGACAAGAAGAGGCCTCAATTAAAATAGTCAACTGTAATTTTGTGTAAGAGACAGATAGGATATGCCG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR CAA 90 bp | GTGAATGTATCCTCCAAGCTTGGTCGCTACCAGCACGGGGTCTCAGTGGAACTAGCATTTCACCAGACGTaGCATGAAGAAGCCATTGTA | + |
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Preference number: 5 (lower is better) Translates to: VNVSSKLGRYQHGVSVELAFHQT*HEEAIV Trigger: TACAATGGCTTCTTCATGCAACGTCTGGTGAAATGC...TAGTTCCACTGAGACCCCGTGCTGGTAGCGACCAAGCTTGGAGGATACATTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR CAA 90 bp | CAACAGGATTGGGAGTCTAGAAGTTTCATTGGTTCTCTGAAAACCACCCCATTTCCAGGCTGGAGCGTGTaGCAGACAAAATCGGCTTGC | + |
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Preference number: 5 (lower is better) Translates to: QQDWESRSFIGSLKTTPFPGWSV*QTKSAC Trigger: GCAAGCCGATTTTGTCTGCAACACGCTCCAGCCTGG...AAATGGGGTGGTTTTCAGAGAACCAATGAAACTTCTAGACTCCCAATCCTGTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR CAA 90 bp | CAACAGGATTGGGAGTCTAGAAGTTTCATTGGTTCTCTGAAAACCACCCCATTTGCAGACAAAATCGGCTaGCTCATCTCCCCACACCTC | + |
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Preference number: 5 (lower is better) Translates to: QQDWESRSFIGSLKTTPFADKIG*LISPHL Trigger: GAGGTGTGGGGAGATGAGCAAGCCGATTTTGTCTGC...AAATGGGGTGGTTTTCAGAGAACCAATGAAACTTCTAGACTCCCAATCCTGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS-3UTR CAA 90 bp | CCAGGGACTTCAAATGGTGGCATTTTAGATGGGAATGTTTGTCTTGGGAACTGCCGGACCTTCTGGGTTTaGATCTCTTCGATGTCCTTA | + |
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Preference number: 5 (lower is better) Translates to: PGTSNGGILDGNVCLGNCRTFWV*ISSMSL Trigger: TAAGGACATCGAAGAGATCAAAACCCAGAAGGTCCG...GCAGTTCCCAAGACAAACATTCCCATCTAAAATGCCACCATTTGAAGTCCCTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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| CDS CAA 72 bp | CACCACAGGGACCCTTCGATACGGACCTTCTGGGTTTaGATCTCTTCGATGTCCTTAAACTCGTTCTTTATC | + |
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Preference number: 6 (lower is better) Translates to: HHRDPSIRTFWV*ISSMSLNSFFI Trigger: GATAAAGAACGAGTTTAAGGACATCGAAGAGATCAAAACCCAGAAGGTCCGTATCGAAGGGTCCCTGTGGTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000055698.8 |
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