Pregenerated sensors for GJA6 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000055691Ensembl transcript IDs: ENSMUST00000069417.6
Found 30 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTGCTTTCACAATGCTTTCAAGCACAAGTCACAATGTCTAGGTTATaGAGCTGCTGTTTAAGTACAGTCATGGCTACTGTTAGATTGCTC | + |
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Preference number: 1 (lower is better) Translates to: LLSQCFQAQVTMSRL*SCCLSTVMATVRLL Trigger: GAGCAATCTAACAGTAGCCATGACTGTACTTAAACAGCAGCTTCATAACCTAGACATTGTGACTTGTGCTTGAAAGCATTGTGAAAGCAA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| 3UTR GCA 90 bp | AAACAAATTAATATTTCTTGTATAAAATGGTATGTGGAGCTGTCATaGAAGAGTGAAAAGTCTGCAGCTCAGCACTTTCAATCACCTGTG | + |
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Preference number: 1 (lower is better) Translates to: KQINISCIKWYVELS*KSEKSAAQHFQSPV Trigger: CACAGGTGATTGAAAGTGCTGAGCTGCAGACTTTTCACTCTTGCATGACAGCTCCACATACCATTTTATACAAGAAATATTAATTTGTTT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| 3UTR-3UTR GCA 90 bp | AAATGGTATGTGGAGCTGTCATGCAAGAGTGAAAAGTCTGCAGCTCAGCACTTTTGGCTACTGTTAGATTaGTCTACAATGTTAATGTCC | + |
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Preference number: 2 (lower is better) Translates to: KWYVELSCKSEKSAAQHFWLLLD*STMLMS Trigger: GGACATTAACATTGTAGAGCAATCTAACAGTAGCCA...AAAGTGCTGAGCTGCAGACTTTTCACTCTTGCATGACAGCTCCACATACCATTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| 3UTR-3UTR GCA 90 bp | TATGTGGAGCTGTCATGCAAGAGTGAAAAGTCTGCAGCTCAGCACTTTCAATCAGAACAAAGCCAAGAATaGCTATTATTGCCAAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: YVELSCKSEKSAAQHFQSEQSQE*LLLPSS Trigger: TGAACTTGGCAATAATAGGCATTCTTGGCTTTGTTC...TGATTGAAAGTGCTGAGCTGCAGACTTTTCACTCTTGCATGACAGCTCCACATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| 3UTR CAA 90 bp | CTACTGTTAGATTGCTCTACAATGTTAATGTCCACTATCTTTGCTTaGCTTTTCTACCTAAAACCCTCTGAGAATTCTGTTTATCATCAC | + |
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Preference number: 2 (lower is better) Translates to: LLLDCSTMLMSTIFA*LFYLKPSENSVYHH Trigger: GTGATGATAAACAGAATTCTCAGAGGGTTTTAGGTAGAAAAGCAAAGCAAAGATAGTGGACATTAACATTGTAGAGCAATCTAACAGTAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| 3UTR-3UTR TCA 90 bp | TACATCTACCTTGGAGAAGGAAAATACATTGTCTACATAGCAAGAGGATTACAAACAATGTCTAGGTTATaGAGCTGCTGTTTAAGTACA | + |
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Preference number: 2 (lower is better) Translates to: YIYLGEGKYIVYIARGLQTMSRL*SCCLST Trigger: TGTACTTAAACAGCAGCTTCATAACCTAGACATTGT...TTGTAATCCTCTTGCTATGTAGACAATGTATTTTCCTTCTCCAAGGTAGATGTA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| 3UTR TCA 72 bp | GCCAGAAAGGATACTTCCTGCCTGCCCTCCCCCTTTTaGCCACGCATTGTAACTGACATGGTTCTGTTCACT | + |
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Preference number: 3 (lower is better) Translates to: ARKDTSCLPSPF*PRIVTDMVLFT Trigger: AGTGAACAGAACCATGTCAGTTACAATGCGTGGTCAAAAGGGGGAGGGCAGGCAGGAAGTATCCTTTCTGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| 3UTR TCA 72 bp | TTGTATAAAATGGTATGTGGAGCTGTCATGCAAGAGTaGAAAGTCTGCAGCTCAGCACTTTCAATCACCTGT | + |
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Preference number: 3 (lower is better) Translates to: LYKMVCGAVMQE*KVCSSALSITC Trigger: ACAGGTGATTGAAAGTGCTGAGCTGCAGACTTTTCACTCTTGCATGACAGCTCCACATACCATTTTATACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| 3UTR-3UTR CAA 90 bp | TATGTGGAGCTGTCATGCAAGAGTGAAAAGTCTGCAGCTCAGCACTTTCAATCAATGGCTACTGTTAGATaGCTCTACAATGTTAATGTC | + |
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Preference number: 3 (lower is better) Translates to: YVELSCKSEKSAAQHFQSMATVR*LYNVNV Trigger: GACATTAACATTGTAGAGCAATCTAACAGTAGCCAT...TGATTGAAAGTGCTGAGCTGCAGACTTTTCACTCTTGCATGACAGCTCCACATA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| 3UTR GCA 72 bp | AATATTTCTTGTATAAAATGGTATGTGGAGCTGTCATaGAAGAGTGAAAAGTCTGCAGCTCAGCACTTTCAA | + |
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Preference number: 3 (lower is better) Translates to: NISCIKWYVELS*KSEKSAAQHFQ Trigger: TTGAAAGTGCTGAGCTGCAGACTTTTCACTCTTGCATGACAGCTCCACATACCATTTTATACAAGAAATATT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR CCA 90 bp | ATGTGGAGCTGTCATGCAAGAGTGAAAAGTCTGCAGCTCAGCACTTTCAATCACGATACGAAAATGACCTaGAGGACCCAGAGGCGCACG | + |
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Preference number: 4 (lower is better) Translates to: MWSCHARVKSLQLSTFNHDTKMT*RTQRRT Trigger: CGTGCGCCTCTGGGTCCTCCAGGTCATTTTCGTATC...GTGATTGAAAGTGCTGAGCTGCAGACTTTTCACTCTTGCATGACAGCTCCACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR TCA 90 bp | AAATGGTATGTGGAGCTGTCATGCAAGAGTGAAAAGTCTGCAGCTCAGCACTTTGCACAGATACGAAAATaGCCTGGAGGACCCAGAGGC | + |
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Preference number: 4 (lower is better) Translates to: KWYVELSCKSEKSAAQHFAQIRK*PGGPRG Trigger: GCCTCTGGGTCCTCCAGGTCATTTTCGTATCTGTGC...AAAGTGCTGAGCTGCAGACTTTTCACTCTTGCATGACAGCTCCACATACCATTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR CCA 90 bp | GTCAATTACACAGGAATTAGGCAACCCCCTTCACCTTCTTCTGCTCTCCAAATAGCGCACGTGAGAGATTaGGAAGGCATGGTCATAGCA | + |
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Preference number: 4 (lower is better) Translates to: VNYTGIRQPPSPSSALQIAHVRD*EGMVIA Trigger: TGCTATGACCATGCCTTCCCAATCTCTCACGTGCGC...TATTTGGAGAGCAGAAGAAGGTGAAGGGGGTTGCCTAATTCCTGTGTAATTGAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR GCA 90 bp | AGGTCAATTACACAGGAATTAGGCAACCCCCTTCACCTTCTTCTGCTCTCCAAACAGGCTGCTGAGTGTTaGAATGGAACTCAAACTGCT | + |
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Preference number: 4 (lower is better) Translates to: RSITQELGNPLHLLLLSKQAAEC*NGTQTA Trigger: AGCAGTTTGAGTTCCATTGCAACACTCAGCAGCCTG...TTTGGAGAGCAGAAGAAGGTGAAGGGGGTTGCCTAATTCCTGTGTAATTGACCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR GCA 90 bp | AGGTCAATTACACAGGAATTAGGCAACCCCCTTCACCTTCTTCTGCTCTCCAAACTTGAACTGCTCTCCTaGAATTGTCTCCAAGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: RSITQELGNPLHLLLLSKLELLS*NCLQVP Trigger: AGGCACTTGGAGACAATTGCAGGAGAGCAGTTCAAG...TTTGGAGAGCAGAAGAAGGTGAAGGGGGTTGCCTAATTCCTGTGTAATTGACCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR TCA 90 bp | GTCAATTACACAGGAATTAGGCAACCCCCTTCACCTTCTTCTGCTCTCCAAATACTGGCCTCATTAAAATaGGCAGCTTCCAGTTCTTCC | + |
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Preference number: 4 (lower is better) Translates to: VNYTGIRQPPSPSSALQILASLK*AASSSS Trigger: GGAAGAACTGGAAGCTGCTCATTTTAATGAGGCCAG...TATTTGGAGAGCAGAAGAAGGTGAAGGGGGTTGCCTAATTCCTGTGTAATTGAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR CCA 90 bp | GTCAATTACACAGGAATTAGGCAACCCCCTTCACCTTCTTCTGCTCTCCAAATAACCTTTTCTAGGAGCTaGTGTAAGGCACTCCAATCA | + |
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Preference number: 4 (lower is better) Translates to: VNYTGIRQPPSPSSALQITFSRS*CKALQS Trigger: TGATTGGAGTGCCTTACACCAGCTCCTAGAAAAGGT...TATTTGGAGAGCAGAAGAAGGTGAAGGGGGTTGCCTAATTCCTGTGTAATTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR GCA 90 bp | GTCAATTACACAGGAATTAGGCAACCCCCTTCACCTTCTTCTGCTCTCCAAATAAGGTTAGCAGCAATCTaGCTCTCATTTTCACCTTAC | + |
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Preference number: 4 (lower is better) Translates to: VNYTGIRQPPSPSSALQIRLAAI*LSFSPY Trigger: GTAAGGTGAAAATGAGAGGCAGATTGCTGCTAACCT...TATTTGGAGAGCAGAAGAAGGTGAAGGGGGTTGCCTAATTCCTGTGTAATTGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR TCA 90 bp | ATGTGGAGCTGTCATGCAAGAGTGAAAAGTCTGCAGCTCAGCACTTTCAATCACCATAGAACAGCTCAATaGTATCCAAGACAAAAGACA | + |
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Preference number: 4 (lower is better) Translates to: MWSCHARVKSLQLSTFNHHRTAQ*YPRQKT Trigger: TGTCTTTTGTCTTGGATATCATTGAGCTGTTCTATG...GTGATTGAAAGTGCTGAGCTGCAGACTTTTCACTCTTGCATGACAGCTCCACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR TCA 90 bp | TTTACCTCTAAGCACTTCTTTAAGTGTATAGTGTTCCCAAGTGCTGTTTTCAGTTCTCGAAGACAGACTTaGAGAAGATGCTGGCCATGT | + |
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Preference number: 4 (lower is better) Translates to: FTSKHFFKCIVFPSAVFSSRRQT*RRCWPC Trigger: ACATGGCCAGCATCTTCTTCAAGTCTGTCTTCGAGA...ACTGAAAACAGCACTTGGGAACACTATACACTTAAAGAAGTGCTTAGAGGTAAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR GCA 90 bp | TACATCTACCTTGGAGAAGGAAAATACATTGTCTACATAGCAAGAGGATTACAACTGCCACACTTGAACTaGTCTCCTGCAATTGTCTCC | + |
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Preference number: 4 (lower is better) Translates to: YIYLGEGKYIVYIARGLQLPHLN*SPAIVS Trigger: GGAGACAATTGCAGGAGAGCAGTTCAAGTGTGGCAG...TTGTAATCCTCTTGCTATGTAGACAATGTATTTTCCTTCTCCAAGGTAGATGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| 3UTR CAA 72 bp | GATTGCTCTACAATGTTAATGTCCACTATCTTTGCTTaGCTTTTCTACCTAAAACCCTCTGAGAATTCTGTT | + |
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Preference number: 4 (lower is better) Translates to: DCSTMLMSTIFA*LFYLKPSENSV Trigger: AACAGAATTCTCAGAGGGTTTTAGGTAGAAAAGCAAAGCAAAGATAGTGGACATTAACATTGTAGAGCAATC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR CAA 90 bp | AGGTCAATTACACAGGAATTAGGCAACCCCCTTCACCTTCTTCTGCTCTCCAAAGGCGCACGTGAGAGATaGGGAAGGCATGGTCATAGC | + |
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Preference number: 5 (lower is better) Translates to: RSITQELGNPLHLLLLSKGARER*GRHGHS Trigger: GCTATGACCATGCCTTCCCAATCTCTCACGTGCGCC...TTTGGAGAGCAGAAGAAGGTGAAGGGGGTTGCCTAATTCCTGTGTAATTGACCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR CAA 90 bp | AGGTCAATTACACAGGAATTAGGCAACCCCCTTCACCTTCTTCTGCTCTCCAAATTCCAGTTCTTCCTCTaGCTTGTTCAACTTCTTATT | + |
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Preference number: 5 (lower is better) Translates to: RSITQELGNPLHLLLLSKFQFFL*LVQLLI Trigger: AATAAGAAGTTGAACAAGCAAGAGGAAGAACTGGAA...TTTGGAGAGCAGAAGAAGGTGAAGGGGGTTGCCTAATTCCTGTGTAATTGACCT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR CAA 90 bp | TACATCTACCTTGGAGAAGGAAAATACATTGTCTACATAGCAAGAGGATTACAAACTGCTCTCCTGCAATaGTCTCCAAGTGCCTTTCCA | + |
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Preference number: 5 (lower is better) Translates to: YIYLGEGKYIVYIARGLQTALLQ*SPSAFP Trigger: TGGAAAGGCACTTGGAGACAATTGCAGGAGAGCAGT...TTGTAATCCTCTTGCTATGTAGACAATGTATTTTCCTTCTCCAAGGTAGATGTA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR CAA 90 bp | TACATCTACCTTGGAGAAGGAAAATACATTGTCTACATAGCAAGAGGATTACAAATCTCGAAGACAGACTaGAAGAAGATGCTGGCCATG | + |
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Preference number: 5 (lower is better) Translates to: YIYLGEGKYIVYIARGLQISKTD*KKMLAM Trigger: CATGGCCAGCATCTTCTTCAAGTCTGTCTTCGAGAT...TTGTAATCCTCTTGCTATGTAGACAATGTATTTTCCTTCTCCAAGGTAGATGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR CAA 90 bp | TTTACCTCTAAGCACTTCTTTAAGTGTATAGTGTTCCCAAGTGCTGTTTTCAGTAAAATGAAAAGAACCTaGATCCATACCTTTCCTCCA | + |
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Preference number: 5 (lower is better) Translates to: FTSKHFFKCIVFPSAVFSKMKRT*IHTFPP Trigger: TGGAGGAAAGGTATGGATCAAGGTTCTTTTCATTTT...ACTGAAAACAGCACTTGGGAACACTATACACTTAAAGAAGTGCTTAGAGGTAAA 37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS-3UTR CAA 90 bp | GTTAGATTGCTCTACAATGTTAATGTCCACTATCTTTGCTTTGCTTTTCTACCTAGTTCTTCCTCTTGCTaGTTCAACTTCTTATTCTGT | + |
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Preference number: 5 (lower is better) Translates to: VRLLYNVNVHYLCFAFLPSSSSC*FNFLFC Trigger: ACAGAATAAGAAGTTGAACAAGCAAGAGGAAGAACT...AGGTAGAAAAGCAAAGCAAAGATAGTGGACATTAACATTGTAGAGCAATCTAAC 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS TCA 72 bp | GTCTCCAAGTGCCTTTCCACGCTGGCCTCATTAAAATaGGCAGCTTCCAGTTCTTCCTCTTGCTTGTTCAAC | + |
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Preference number: 6 (lower is better) Translates to: VSKCLSTLASLK*AASSSSSCLFN Trigger: GTTGAACAAGCAAGAGGAAGAACTGGAAGCTGCTCATTTTAATGAGGCCAGCGTGGAAAGGCACTTGGAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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| CDS TCA 72 bp | TCATTTTCACCTTACTCTGTTCTTCACTGCCACACTTaGACTGCTCTCCTGCAATTGTCTCCAAGTGCCTTT | + |
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Preference number: 6 (lower is better) Translates to: SFSPYSVLHCHT*TALLQLSPSAF Trigger: AAAGGCACTTGGAGACAATTGCAGGAGAGCAGTTCAAGTGTGGCAGTGAAGAACAGAGTAAGGTGAAAATGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000069417.6 |
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