Pregenerated sensors for GJA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050953

Ensembl transcript IDs: ENSMUST00000068581.9, ENSMUST00000220069.2

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
3UTR-3UTR CCA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTCTGCTCAAAGCTCTATaGCAGAATCTCAGTAAAACA	+
Preference number: 2 (lower is better) Translates to: QAREARLQTAKFLNTGMFLLKAL*QNLSKT Trigger: TGTTTTACTGAGATTCTGCCATAGAGCTTTGAGCAG...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
3UTR CAA 90 bp	GACCAGCTGAGGATAATATATGGAAGACACAAAGGTGGGACAGATTaGAAAAAGAACCCACTGAGATGCAAATACATGGGCAATCTTTTT	+
Preference number: 2 (lower is better) Translates to: DQLRIIYGRHKGGTD*KKNPLRCKYMGNLF Trigger: AAAAAGATTGCCCATGTATTTGCATCTCAGTGGGTTCTTTTTCAAATCTGTCCCACCTTTGTGTCTTCCATATATTATCCTCAGCTGGTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
3UTR-3UTR CAA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTAAAGGAAATGCCATGTaGAGGACTTGGATTCCTGCT	+
Preference number: 3 (lower is better) Translates to: QAREARLQTAKFLNTGMFKGNAM*RTWIPA Trigger: AGCAGGAATCCAAGTCCTCAACATGGCATTTCCTTT...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
3UTR TCA 72 bp	AGGACAACCTGTCTTTTCATAAAGGAAATGCCATGTTaGGGACTTGGATTCCTGCTCAAAGCTCTATGGCAG	+
Preference number: 3 (lower is better) Translates to: RTTCLFIKEMPC*GLGFLLKALWQ Trigger: CTGCCATAGAGCTTTGAGCAGGAATCCAAGTCCTCAACATGGCATTTCCTTTATGAAAAGACAGGTTGTCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR GCA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGACAGGCCGAGGTCTGCTaGTGGCGCGGCTGCTGGCTC	+
Preference number: 4 (lower is better) Translates to: GAERESPIYVSSNETLTRQAEVC*WRGCWL Trigger: GAGCCAGCAGCCGCGCCAGCAGCAGACCTCGGCCTG...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CCA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTTGCTGGCGCGGCTGCTaGCTCTGCTGGAAGGTCGCT	+
Preference number: 4 (lower is better) Translates to: QAREARLQTAKFLNTGMFCWRGC*LCWKVA Trigger: AGCGACCTTCCAGCAGAGCCAGCAGCCGCGCCAGCA...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR GCA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGACATCAGGCCGAGGTCTaGTGCTGGCGCGGCTGCTGG	+
Preference number: 4 (lower is better) Translates to: GAERESPIYVSSNETLTRHQAEV*CWRGCW Trigger: CCAGCAGCCGCGCCAGCAGCAGACCTCGGCCTGATG...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CCA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTCGTGGGAGTTGGAGATaGTGCTTCCGGCCTGCCCCA	+
Preference number: 4 (lower is better) Translates to: QAREARLQTAKFLNTGMFRGSWR*CFRPAP Trigger: TGGGGCAGGCCGGAAGCACCATCTCCAACTCCCACG...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR GCA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGATGCTGCTGGCGCGGCTaGTGGCTCTGCTGGAAGGTC	+
Preference number: 4 (lower is better) Translates to: GAERESPIYVSSNETLTRCCWRG*WLCWKV Trigger: GACCTTCCAGCAGAGCCAGCAGCCGCGCCAGCAGCA...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CCA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTCCTTCCCTCCGGCCGTaGAGTAGGCTTGGACCTTGT	+
Preference number: 4 (lower is better) Translates to: QAREARLQTAKFLNTGMFPSLRP*SRLGPC Trigger: ACAAGGTCCAAGCCTACTCCACGGCCGGAGGGAAGG...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CCA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTGAGATCCGCAGTCTTTaGATGGGCTCAGTGGGCCGG	+
Preference number: 4 (lower is better) Translates to: QAREARLQTAKFLNTGMFEIRSL*MGSVGR Trigger: CCGGCCCACTGAGCCCATCCAAAGACTGCGGATCTC...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CCA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGATGCTGGCGCGGCTGCTaGCTCTGCTGGAAGGTCGCT	+
Preference number: 4 (lower is better) Translates to: GAERESPIYVSSNETLTRCWRGC*LCWKVA Trigger: AGCGACCTTCCAGCAGAGCCAGCAGCCGCGCCAGCA...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR TCA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTTTCATCACCCCAAGCTaGCTCAACCGCTGTCCCCAG	+
Preference number: 4 (lower is better) Translates to: QAREARLQTAKFLNTGMFFITPS*LNRCPQ Trigger: CTGGGGACAGCGGTTGAGTCAGCTTGGGGTGATGAA...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CCA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGACGTGGGAGTTGGAGATaGTGCTTCCGGCCTGCCCCA	+
Preference number: 4 (lower is better) Translates to: GAERESPIYVSSNETLTRRGSWR*CFRPAP Trigger: TGGGGCAGGCCGGAAGCACCATCTCCAACTCCCACG...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR GCA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTGGCAGGGATCTCTCTTaGAGGTGTAGACCGCACTCA	+
Preference number: 4 (lower is better) Translates to: QAREARLQTAKFLNTGMFGRDLS*RCRPHS Trigger: TGAGTGCGGTCTACACCTGCAAGAGAGATCCCTGCC...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CCA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTACGATAGCTAAGGGCTaGAGTTCGTGTCCAGCAGCA	+
Preference number: 4 (lower is better) Translates to: QAREARLQTAKFLNTGMFTIAKG*SSCPAA Trigger: TGCTGCTGGACACGAACTCCAGCCCTTAGCTATCGT...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR GCA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGAGGCAGGGATCTCTCTTaGAGGTGTAGACCGCACTCA	+
Preference number: 4 (lower is better) Translates to: GAERESPIYVSSNETLTRGRDLS*RCRPHS Trigger: TGAGTGCGGTCTACACCTGCAAGAGAGATCCCTGCC...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR TCA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGACGGTCTGCGCCACTTTaGGCTCCTCTTCTTTCTTGT	+
Preference number: 4 (lower is better) Translates to: GAERESPIYVSSNETLTRRSAPL*APLLSC Trigger: ACAAGAAAGAAGAGGAGCTCAAAGTGGCGCAGACCG...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR TCA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTCATAGAAGAGCTCAATaGTATTCAGAGCGAGAGACA	+
Preference number: 4 (lower is better) Translates to: QAREARLQTAKFLNTGMFHRRAQ*YSERET Trigger: TGTCTCTCGCTCTGAATATCATTGAGCTCTTCTATG...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR GCA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTCTTGCTTGTTGTAATTaGGGCAGGAGGAATTGTTTC	+
Preference number: 4 (lower is better) Translates to: QAREARLQTAKFLNTGMFLACCN*GRRNCF Trigger: GAAACAATTCCTCCTGCCGCAATTACAACAAGCAAG...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR TCA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGACATAGAAGAGCTCAATaGTATTCAGAGCGAGAGACA	+
Preference number: 4 (lower is better) Translates to: GAERESPIYVSSNETLTRHRRAQ*YSERET Trigger: TGTCTCTCGCTCTGAATATCATTGAGCTCTTCTATG...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR GCA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGATTCTTGATTTCAATCTaGTTCAGGTGCATCTCCACG	+
Preference number: 4 (lower is better) Translates to: GAERESPIYVSSNETLTRFLISI*FRCIST Trigger: CGTGGAGATGCACCTGAAGCAGATTGAAATCAAGAA...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CAA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGAGGCCGTGGAGTAGGCTaGGACCTTGTCCAGCAGCTT	+
Preference number: 5 (lower is better) Translates to: GAERESPIYVSSNETLTRGRGVG*DLVQQL Trigger: AAGCTGCTGGACAAGGTCCAAGCCTACTCCACGGCC...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CAA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTTTCACAACCGGGTTGTaGAGTGTTACAGCGAAAGGC	+
Preference number: 5 (lower is better) Translates to: QAREARLQTAKFLNTGMFFTTGL*SVTAKG Trigger: GCCTTTCGCTGTAACACTCAACAACCCGGTTGTGAA...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CAA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTCCTCTCATCTTCACCTaGCCGTGTTCTTCAATCCCA	+
Preference number: 5 (lower is better) Translates to: QAREARLQTAKFLNTGMFPLIFT*PCSSIP Trigger: TGGGATTGAAGAACACGGCAAGGTGAAGATGAGAGG...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CAA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTGTAATTCGCCCAGTTTaGCTCGCTGGCTTGCTTGTT	+
Preference number: 5 (lower is better) Translates to: QAREARLQTAKFLNTGMFVIRPV*LAGLLV Trigger: AACAAGCAAGCCAGCGAGCAAAACTGGGCGAATTAC...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CAA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTACCTCGAAGACAGACTaGAAGAGGATGCTGATGATG	+
Preference number: 5 (lower is better) Translates to: QAREARLQTAKFLNTGMFTSKTD*KRMLMM Trigger: CATCATCAGCATCCTCTTCAAGTCTGTCTTCGAGGT...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CAA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGATCACCAGTGACCAGCTaGTACCCAGGAGGAGACATA	+
Preference number: 5 (lower is better) Translates to: GAERESPIYVSSNETLTRSPVTS*YPGGDI Trigger: TATGTCTCCTCCTGGGTACAAGCTGGTCACTGGTGA...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CAA 90 bp	CAGGCCAGGGAAGCTCGCCTGCAAACTGCCAAGTTTTTAAACACTGGAATGTTTCCAGCAGCAACTTTTTaGGCATTTTGGCTGTCGTCA	+
Preference number: 5 (lower is better) Translates to: QAREARLQTAKFLNTGMFPAATF*AFWLSS Trigger: TGACGACAGCCAAAATGCCAAAAAAGTTGCTGCTGG...AAACATTCCAGTGTTTAAAAACTTGGCAGTTTGCAGGCGAGCTTCCCTGGCCTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS-3UTR CAA 90 bp	GGGGCAGAGAGAGAAAGCCCTATCTATGTTTCATCCAATGAGACTCTTACTAGACCAGCAGCAACTTTTTaGGCATTTTGGCTGTCGTCA	+
Preference number: 5 (lower is better) Translates to: GAERESPIYVSSNETLTRPAATF*AFWLSS Trigger: TGACGACAGCCAAAATGCCAAAAAAGTTGCTGCTGG...TCTAGTAAGAGTCTCATTGGATGAAACATAGATAGGGCTTTCTCTCTCTGCCCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2
CDS CCA 72 bp	ATATTTTGGAGATCCGCAGTCTTTGGATGGGCTCAGTaGGCCGGTGGTGGCGTGGTAAGGATCGCTTCTTCC	+
Preference number: 6 (lower is better) Translates to: IFWRSAVFGWAQ*AGGGVVRIASS Trigger: GGAAGAAGCGATCCTTACCACGCCACCACCGGCCCACTGAGCCCATCCAAAGACTGCGGATCTCCAAAATAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000068581.9 ENSMUST00000220069.2