RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GIT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000041890

Ensembl transcript IDs: ENSMUST00000043283.14, ENSMUST00000086564.11, ENSMUST00000112183.8, ENSMUST00000112185.9, ENSMUST00000130925.2, ENSMUST00000131016.2, ENSMUST00000131993.8, ENSMUST00000146044.8, ENSMUST00000155908.8, ENSMUST00000178440.8

Found 646 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGTCAACCTCTGCCCTTaGGGAGCTGTGGGGGAGCTGCCACCAGCTAGGGCACACGGGGAA +
Preference number: 1 (lower is better)
Translates to: SERQCCGGLGVNLCP*GAVGELPPARAHGE
Trigger: TTCCCCGTGTGCCCTAGCTGGTGGCAGCTCCCCCACAGCTCCCCAAGGGCAGAGGTTGACACCCAGGCCACCGCAGCACTGGCGCTCGCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 90 bp CGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTaGGTGTCAACCTCTGCCCTTGGGGAGCTGTGGGGGAGCTGCCAC +
Preference number: 1 (lower is better)
Translates to: RQSAFSTASASAAVA*VSTSALGELWGSCH
Trigger: GTGGCAGCTCCCCCACAGCTCCCCAAGGGCAGAGGTTGACACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 90 bp CAGGTCAGGGCCAGAGCTCCACCCAGGCAGAAGCGATCGACAAAGTaGCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGTC +
Preference number: 1 (lower is better)
Translates to: QVRARAPPRQKRSTK*LQHSERQCCGGLGV
Trigger: GACACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATCGCTTCTGCCTGGGTGGAGCTCTGGCCCTGACCTG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 90 bp CGCCCTTGGCTGTCTGTGCACCTGGCTGGCAACATAGCCACTGCCTaGTCCCTCAGGTCAGGGCCAGAGCTCCACCCAGGCAGAAGCGAT +
Preference number: 1 (lower is better)
Translates to: RPWLSVHLAGNIATA*SLRSGPELHPGRSD
Trigger: ATCGCTTCTGCCTGGGTGGAGCTCTGGCCCTGACCTGAGGGAGCAGGCAGTGGCTATGTTGCCAGCCAGGTGCACAGACAGCCAAGGGCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 90 bp ACAAGCTGCTGTCCTCACAGGCTGGGTGGGGTCCCTAGCCGCCCTTaGCTGTCTGTGCACCTGGCTGGCAACATAGCCACTGCCTGCTCC +
Preference number: 1 (lower is better)
Translates to: TSCCPHRLGGVPSRP*LSVHLAGNIATACS
Trigger: GGAGCAGGCAGTGGCTATGTTGCCAGCCAGGTGCACAGACAGCCAAGGGCGGCTAGGGACCCCACCCAGCCTGTGAGGACAGCAGCTTGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 90 bp TCTTCCCGGAAGCTTCCAACAGAGGCCTGCTCTCTCTGGGGATGGTaGGAACCAGCTCAGGCTGGAACCAGCTCCAGGGAGCCTGCCAGG +
Preference number: 1 (lower is better)
Translates to: SSRKLPTEACSLWGW*EPAQAGTSSREPAR
Trigger: CCTGGCAGGCTCCCTGGAGCTGGTTCCAGCCTGAGCTGGTTCCCACCATCCCCAGAGAGAGCAGGCCTCTGTTGGAAGCTTCCGGGAAGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 90 bp AACAGAGGCCTGCTCTCTCTGGGGATGGTGGGAACCAGCTCAGGCTaGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTG +
Preference number: 1 (lower is better)
Translates to: NRGLLSLGMVGTSSG*NQLQGACQEEQSSL
Trigger: CAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCCAGCCTGAGCTGGTTCCCACCATCCCCAGAGAGAGCAGGCCTCTGTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 90 bp GGGATGGTGGGAACCAGCTCAGGCTGGAACCAGCTCCAGGGAGCCTaGCAGGAAGAGCAGTCATCCTTGGAGCACGCAGAAAAGCTTGTC +
Preference number: 1 (lower is better)
Translates to: GMVGTSSGWNQLQGA*QEEQSSLEHAEKLV
Trigger: GACAAGCTTTTCTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCCAGCCTGAGCTGGTTCCCACCATCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR TCA 90 bp GAAGCTGTGGAGGATGAAAACACGCGGCTTTCAGGCTGCATTCCATaGTGGAAGTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCG +
Preference number: 1 (lower is better)
Translates to: EAVEDENTRLSGCIP*WKSLRSGQSPCAVP
Trigger: CGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGACTTCCATCATGGAATGCAGCCTGAAAGCCGCGTGTTTTCATCCTCCACAGCTTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR TCA 90 bp GTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTGATTaGCTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTG +
Preference number: 1 (lower is better)
Translates to: VHMERPHRMEGKLPD*LHDAWKGRMLLLLL
Trigger: CAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR TCA 90 bp CCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTaGTTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCT +
Preference number: 1 (lower is better)
Translates to: PRAHGETPQDGREAS*LTARCLEGTDAAAA
Trigger: AGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 90 bp ACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTGATTGACTaGACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGT +
Preference number: 1 (lower is better)
Translates to: TWRDPTGWKGSFLID*TMLGRDGCCCCCWG
Trigger: ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 90 bp GCTGGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTaGAGCACGCAGAAAAGCTTGTCAGAGAGGATGCCTGAGCTCACA +
Preference number: 1 (lower is better)
Translates to: AGTSSREPARKSSHP*STQKSLSERMPELT
Trigger: TGTGAGCTCAGGCATCCTCTCTGACAAGCTTTTCTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 90 bp GTGCCGTTAAGAGTCCCGAGTGCACGCAACACTGGACTTCGTCTTTaGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGA +
Preference number: 1 (lower is better)
Translates to: VPLRVPSARNTGLRL*QVKTVVLRPQCLPG
Trigger: TCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACGAAGTCCAGTGTTGCGTGCACTCGGGACTCTTAACGGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR TCA 90 bp AAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGGAGCTTaGGGCAGGGCCTGCTCCATTAATTGTGTCTTCATCCTCTCCATC +
Preference number: 1 (lower is better)
Translates to: KDRGAEATVPSGNGA*GRACSINCVFILSI
Trigger: GATGGAGAGGATGAAGACACAATTAATGGAGCAGGCCCTGCCTCAAGCTCCGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR TCA 90 bp GATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTTCAGGATGCTaGGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGG +
Preference number: 1 (lower is better)
Translates to: DSRRILQAGTVTSGC*EATRGGGARGLNTR
Trigger: CCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTGAAGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 90 bp GGACAAAGAAGGAAAGGAAACTGCACTGCGAGCCCACCGAAGCTGTaGAGGATGAAAACACGCGGCTTTCAGGCTGCATTCCATGATGGA +
Preference number: 1 (lower is better)
Translates to: GQRRKGNCTASPPKL*RMKTRGFQAAFHDG
Trigger: TCCATCATGGAATGCAGCCTGAAAGCCGCGTGTTTTCATCCTCCACAGCTTCGGTGGGCTCGCAGTGCAGTTTCCTTTCCTTCTTTGTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 90 bp ATACAAGAGTTAGAAATGGATCCGCTCCTTGTCACTCCCAAGAGATaGGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATG +
Preference number: 1 (lower is better)
Translates to: IQELEMDPLLVTPKR*ALSRKWEALLLVHM
Trigger: CATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAAGGAGCGGATCCATTTCTAACTCTTGTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGCTTGGAAGGGACGGATaGTGCTGCTGCTGCTGGGGT +
Preference number: 2 (lower is better)
Translates to: DRQSAFSTASASAAVAWVLGRDG*CCCCWG
Trigger: ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAG...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGCCTGACAGTGGGCGGTaGTCCTGCTCTGAATGTGGC +
Preference number: 2 (lower is better)
Translates to: DRQSAFSTASASAAVAWVPDSGR*SCSECG
Trigger: GCCACATTCAGAGCAGGAGCACCGCCCACTGTCAGG...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCCAGCTCCAGGGAGCCTaGCAGGAAGAGCAGTCATCC +
Preference number: 2 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECQLQGA*QEEQSS
Trigger: GGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTG...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTGTGTGGGGCCCCTCCTaGTGTCTCCTCAGGCCTCCA +
Preference number: 2 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGVWGPS*CLLRPP
Trigger: TGGAGGCCTGAGGAGACAGCAGGAGGGGCCCCACAC...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGCTACCCGTGAGGGGATaGGGACACGGAGGCCCTGCG +
Preference number: 2 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTLPVRG*GHGGPA
Trigger: CGCAGGGCCTCCGTGTCCCCATCCCCTCACGGGTAG...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CTCCCTCAGGTCAGGGCCAGAGCTCCACCCAGGCAGAAGCGATCGACAAAGTGCGTCAACCTCTGCCCTTaGGGAGCTGTGGGGGAGCTG +
Preference number: 2 (lower is better)
Translates to: LPQVRARAPPRQKRSTKCVNLCP*GAVGEL
Trigger: CAGCTCCCCCACAGCTCCCCAAGGGCAGAGGTTGAC...GCACTTTGTCGATCGCTTCTGCCTGGGTGGAGCTCTGGCCCTGACCTGAGGGAG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp TGGGGACACGGAGGCCCTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCCCTGACAGTGGGCGGTaGTCCTGCTCTGAATGTGGC +
Preference number: 2 (lower is better)
Translates to: WGHGGPASYLGRHPSRGAPDSGR*SCSECG
Trigger: GCCACATTCAGAGCAGGAGCACCGCCCACTGTCAGG...GGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAGGGCCTCCGTGTCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCTGGCAACATAGCCACTaGCTGCTCCCTCAGGTCAGG +
Preference number: 2 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECWQHSH*LLPQVR
Trigger: CCTGACCTGAGGGAGCAGGCAGTGGCTATGTTGCCA...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGCCTGACAGTGGGCGGTaGTCCTGCTCTGAATGTGGC +
Preference number: 2 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAEPDSGR*SCSECG
Trigger: GCCACATTCAGAGCAGGAGCACCGCCCACTGTCAGG...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAAGCGAGCGCCAGTGCTaGGGTGGCCTGGGTGTCAAC +
Preference number: 2 (lower is better)
Translates to: GPAGHPPALRLVCIDEWASERQC*GGLGVN
Trigger: GTTGACACCCAGGCCACCGCAGCACTGGCGCTCGCT...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTCAGCTCCAGGGAGCCTaGCAGGAAGAGCAGTCATCC +
Preference number: 2 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGQLQGA*QEEQSS
Trigger: GGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTG...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCGCTCTCTCTAGGAAGTaGGAAGCTCTGCTCCTCGTG +
Preference number: 2 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECALSRK*EALLLV
Trigger: CACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGC...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGGCCCTGCGTCTTACCTaGGAAGACATCCTTCCAGAG +
Preference number: 2 (lower is better)
Translates to: DRQSAFSTASASAAVAWVALRLT*EDILPE
Trigger: CTCTGGAAGGATGTCTTCCCAGGTAAGACGCAGGGC...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGTCAGGAGGGACTGTGTaGGGCCCCTCCTGCTGTCTC +
Preference number: 2 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTSGGTV*GPSCCL
Trigger: GAGACAGCAGGAGGGGCCCCACACAGTCCCTCCTGA...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGGGAAGGGAAGCTTCCTaGTTGACTGCACGATGCTTG +
Preference number: 2 (lower is better)
Translates to: DRQSAFSTASASAAVAWVGREAS*LTARCL
Trigger: CAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCC...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCGGAAGGGAAGCTTCCTaGTTGACTGCACGATGCTTG +
Preference number: 2 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECGREAS*LTARCL
Trigger: CAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCC...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGAGCCTCACGTTGAGGTaGTGCTGTCTCCAGGATGCA +
Preference number: 2 (lower is better)
Translates to: GTSSREPARKSSHPWSTQSLTLR*CCLQDA
Trigger: TGCATCCTGGAGACAGCATCACCTCAACGTGAGGCT...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGACAGGGCCTTCAGCCTaGGGAGGACATGGGACTGAC +
Preference number: 2 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTTGPSA*GGHGTD
Trigger: GTCAGTCCCATGTCCTCCTCAGGCTGAAGGCCCTGT...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGCTTGGAAGGGACGGATaGTGCTGCTGCTGCTGGGGT +
Preference number: 2 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGALGRDG*CCCCWG
Trigger: ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAG...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp AATCATGAACTACCCGTGAGGGGATGGGGACACGGAGGCCCTGCGTCTTACCTGCTTGGAAGGGACGGATaGTGCTGCTGCTGCTGGGGT +
Preference number: 2 (lower is better)
Translates to: NHELPVRGWGHGGPASYLLGRDG*CCCCWG
Trigger: ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAG...CAGGTAAGACGCAGGGCCTCCGTGTCCCCATCCCCTCACGGGTAGTTCATGATT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCGTCACTCCCAAGAGATaGGCTCTCTCTAGGAAGTGG +
Preference number: 2 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECVTPKR*ALSRKW
Trigger: CCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGAC...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTTGGCAACATAGCCACTaGCTGCTCCCTCAGGTCAGG +
Preference number: 2 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGWQHSH*LLPQVR
Trigger: CCTGACCTGAGGGAGCAGGCAGTGGCTATGTTGCCA...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGTGCTCCTCGTGCACATaGAGAGACCCCACAGGATGG +
Preference number: 2 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAECSSCT*RDPTGW
Trigger: CCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCA...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp TGGGGACACGGAGGCCCTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGCTCTCTCTAGGAAGTaGGAAGCTCTGCTCCTCGTG +
Preference number: 2 (lower is better)
Translates to: WGHGGPASYLGRHPSRGAALSRK*EALLLV
Trigger: CACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGC...GGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAGGGCCTCCGTGTCCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTGCTGCCTTCCAGGGCTaGCTGACAGGTTCACTCATG +
Preference number: 2 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGAAFQG*LTGSLM
Trigger: CATGAGTGAACCTGTCAGCCAGCCCTGGAAGGCAGC...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCGAACACATGGGGTCATaGCCTAAGCACTTGGTGACA +
Preference number: 2 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECEHMGS*PKHLVT
Trigger: TGTCACCAAGTGCTTAGGTCATGACCCCATGTGTTC...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp TGGGGACACGGAGGCCCTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGGAAGGGAAGCTTCCTaGTTGACTGCACGATGCTTG +
Preference number: 2 (lower is better)
Translates to: WGHGGPASYLGRHPSRGAGREAS*LTARCL
Trigger: CAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCC...GGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAGGGCCTCCGTGTCCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGCGTTCTATGGGAGACTaGTGCTGCCTTCCAGGGCTG +
Preference number: 2 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGARSMGD*CCLPGL
Trigger: CAGCCCTGGAAGGCAGCATCAGTCTCCCATAGAACG...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGACTTGGAAGGGACGGATaGTGCTGCTGCTGCTGGGGT +
Preference number: 2 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGLGRDG*CCCCWG
Trigger: ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAG...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCTTGGAAGGGACGGATaGTGCTGCTGCTGCTGGGGT +
Preference number: 2 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQLGRDG*CCCCWG
Trigger: ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAG...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CCAGGGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCGTCACTCCCAAGAGATaGGCTCTCTCTAGGAAGTGG +
Preference number: 2 (lower is better)
Translates to: PGLADRFTHVQVTDPSGGVTPKR*ALSRKW
Trigger: CCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGAC...GCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGTGGCAACATAGCCACTaGCTGCTCCCTCAGGTCAGG +
Preference number: 2 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGAWQHSH*LLPQVR
Trigger: CCTGACCTGAGGGAGCAGGCAGTGGCTATGTTGCCA...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCCTTTCTAAAAGGCCCTaGTGGACATCCTCCAGCACT +
Preference number: 2 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECLSKRP*WTSSST
Trigger: AGTGCTGGAGGATGTCCAGCAGGGCCTTTTAGAAAG...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGGCTCTCTCTAGGAAGTaGGAAGCTCTGCTCCTCGTG +
Preference number: 2 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAEALSRK*EALLLV
Trigger: CACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGC...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTGCCCTGCGTCTTACCTaGGAAGACATCCTTCCAGAG +
Preference number: 2 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGALRLT*EDILPE
Trigger: CTCTGGAAGGATGTCTTCCCAGGTAAGACGCAGGGC...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGGTCTGTGCACCTGGCTaGCAACATAGCCACTGCCTG +
Preference number: 2 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTVCAPG*QHSHCL
Trigger: CAGGCAGTGGCTATGTTGCCAGCCAGGTGCACAGAC...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp TGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGCCTGGGAAGGGAAGCTTCCTaGTTGACTGCACGATGCTTG +
Preference number: 2 (lower is better)
Translates to: WEDILPEEPCGGCQQHGLGREAS*LTARCL
Trigger: CAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCC...CAGGCCGTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGAGGCAGGTGGATTTCTaGGTTCCAGGACAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTRQVDF*VPGQPG
Trigger: ACCAGGCTGTCCTGGAACTCAGAAATCCACCTGCCT...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGGCAGGCTCAGCATACTaGGGTCACCTCACTTTGGTC +
Preference number: 2 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGAAGSAY*GHLTLV
Trigger: GACCAAAGTGAGGTGACCTCAGTATGCTGAGCCTGC...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGGCAGGCTCAGCATACTaGGGTCACCTCACTTTGGTC +
Preference number: 2 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTAGSAY*GHLTLV
Trigger: GACCAAAGTGAGGTGACCTCAGTATGCTGAGCCTGC...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGAGGGACGGATGCTGCTaGTGCTGCTGGGGTTTTTGT +
Preference number: 2 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTRDGCC*CCWGFC
Trigger: ACAAAAACCCCAGCAGCAGCAGCAGCATCCGTCCCT...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGAAGGGACGGATGCTGCTaGTGCTGCTGGGGTTTTTGT +
Preference number: 2 (lower is better)
Translates to: GRCSCSECGRLEADVKGGRDGCC*CCWGFC
Trigger: ACAAAAACCCCAGCAGCAGCAGCAGCATCCGTCCCT...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGAAGGGACGGATGCTaGTGCTGCTGCTGGGGTTTT +
Preference number: 2 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHGRDGC*CCCWGF
Trigger: AAAACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCC...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGCTTGGAAGGGACGGATaGTGCTGCTGCTGCTGGGGT +
Preference number: 2 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSLGRDG*CCCCWG
Trigger: ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAG...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGCTTTCTAAAAGGCCCTaGTGGACATCCTCCAGCACT +
Preference number: 2 (lower is better)
Translates to: GTSSREPARKSSHPWSTQLSKRP*WTSSST
Trigger: AGTGCTGGAGGATGTCCAGCAGGGCCTTTTAGAAAG...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGGCCCTGCGTCTTACCTaGGAAGACATCCTTCCAGAG +
Preference number: 2 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGAALRLT*EDILPE
Trigger: CTCTGGAAGGATGTCTTCCCAGGTAAGACGCAGGGC...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGCTGCCTTCCAGGGCTaGCTGACAGGTTCACTCATG +
Preference number: 2 (lower is better)
Translates to: GPAGHPPALRLVCIDEWAAAFQG*LTGSLM
Trigger: CATGAGTGAACCTGTCAGCCAGCCCTGGAAGGCAGC...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGAGTGGGGTACACAGGTaGGAAGGCAGAATCCCAGAG +
Preference number: 2 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTSGVHR*EGRIPE
Trigger: CTCTGGGATTCTGCCTTCCCACCTGTGTACCCCACT...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAAGGCAGGTGGATTTCTaGGTTCCAGGACAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: GPAGHPPALRLVCIDEWARQVDF*VPGQPG
Trigger: ACCAGGCTGTCCTGGAACTCAGAAATCCACCTGCCT...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACAGGGACGGATGCTGCTaGTGCTGCTGGGGTTTTTGT +
Preference number: 2 (lower is better)
Translates to: TPKRCALSRKWEALLLVHRDGCC*CCWGFC
Trigger: ACAAAAACCCCAGCAGCAGCAGCAGCATCCGTCCCT...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGGTCACTCCCAAGAGATaGGCTCTCTCTAGGAAGTGG +
Preference number: 2 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTVTPKR*ALSRKW
Trigger: CCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGAC...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCATGCTGTCTCCAGGATaGATTGGCCATGTTGTAAGA +
Preference number: 2 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECMLSPG*IGHVVR
Trigger: TCTTACAACATGGCCAATGCATCCTGGAGACAGCAT...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGAGAGACCCCACAGGATaGAAGGGAAGCTTCCTGATT +
Preference number: 2 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAERDPTG*KGSFLI
Trigger: AATCAGGAAGCTTCCCTTCCATCCTGTGGGGTCTCT...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTCTACCCGTGAGGGGATaGGGACACGGAGGCCCTGCG +
Preference number: 2 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTLPVRG*GHGGPA
Trigger: CGCAGGGCCTCCGTGTCCCCATCCCCTCACGGGTAG...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATGTCAACCTCTGCCCTTaGGGAGCTGTGGGGGAGCTG +
Preference number: 2 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHVNLCP*GAVGEL
Trigger: CAGCTCCCCCACAGCTCCCCAAGGGCAGAGGTTGAC...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTGCTGTCCTCACAGGCTaGGTGGGGTCCCTAGCCGCC +
Preference number: 2 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTAVLTG*VGSLAA
Trigger: GGCGGCTAGGGACCCCACCCAGCCTGTGAGGACAGC...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCAGCTGTCCTCACAGGCTaGGTGGGGTCCCTAGCCGCC +
Preference number: 2 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSAVLTG*VGSLAA
Trigger: GGCGGCTAGGGACCCCACCCAGCCTGTGAGGACAGC...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCGAAAAACCAAAGCACTaGCAGCCACAGGCTACTTTT +
Preference number: 2 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECEKPKH*QPQATF
Trigger: AAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTC...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCTTCAGTGGGCATGTCTaGATTGACTGTCCACATTTC +
Preference number: 2 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECFSGHV*IDCPHF
Trigger: GAAATGTGGACAGTCAATCCAGACATGCCCACTGAA...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGAGAGAGCAGCCAGATTaGATGCAGAGCTCACTCCTG +
Preference number: 2 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTREQPD*MQSSLL
Trigger: CAGGAGTGAGCTCTGCATCCAATCTGGCTGCTCTCT...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCAGACCCCAGCGGAGGCTaGGATGGGCAGCCTGTTCAG +
Preference number: 2 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSDPSGG*DGQPVQ
Trigger: CTGAACAGGCTGCCCATCTCAGCCTCCGCTGGGGTC...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGTCACTCCCAAGAGATaGGCTCTCTCTAGGAAGTGG +
Preference number: 2 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHVTPKR*ALSRKW
Trigger: CCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGAC...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATCCTGACAGTGGGCGGTaGTCCTGCTCTGAATGTGGC +
Preference number: 2 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHPDSGR*SCSECG
Trigger: GCCACATTCAGAGCAGGAGCACCGCCCACTGTCAGG...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGATGCTGTCTCCAGGATaGATTGGCCATGTTGTAAGA +
Preference number: 2 (lower is better)
Translates to: GTSSREPARKSSHPWSTQMLSPG*IGHVVR
Trigger: TCTTACAACATGGCCAATGCATCCTGGAGACAGCAT...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGAGAGACCCCACAGGATaGAAGGGAAGCTTCCTGATT +
Preference number: 2 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGARDPTG*KGSFLI
Trigger: AATCAGGAAGCTTCCCTTCCATCCTGTGGGGTCTCT...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGTTCAGTGGGCATGTCTaGATTGACTGTCCACATTTC +
Preference number: 2 (lower is better)
Translates to: GTSSREPARKSSHPWSTQFSGHV*IDCPHF
Trigger: GAAATGTGGACAGTCAATCCAGACATGCCCACTGAA...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTGAGTGGGCAGGCCCCTaGAGCGCTGAGCCTTTCCTC +
Preference number: 2 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTEWAGP*SAEPFL
Trigger: GAGGAAAGGCTCAGCGCTCCAGGGGCCTGCCCACTC...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTAAGAGCAGTCATCCTTaGAGCACGCAGAAAAGCTTG +
Preference number: 2 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGKSSHP*STQKSL
Trigger: CAAGCTTTTCTGCGTGCTCCAAGGATGACTGCTCTT...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGAACACATGGGGTCATaGCCTAAGCACTTGGTGACA +
Preference number: 2 (lower is better)
Translates to: GPAGHPPALRLVCIDEWAEHMGS*PKHLVT
Trigger: TGTCACCAAGTGCTTAGGTCATGACCCCATGTGTTC...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGTGGGCATGTCTGGATTaGCTGTCCACATTTCTGATT +
Preference number: 2 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAEWACLD*LSTFLI
Trigger: AATCAGAAATGTGGACAGTCAATCCAGACATGCCCA...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGCTACTTTTCTACAGCTaGATGAGGGGTATGAGTGGG +
Preference number: 2 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGALLFYS*MRGMSG
Trigger: CCCACTCATACCCCTCATGCAGCTGTAGAAAAGTAG...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAAGAGACCCCACAGGATaGAAGGGAAGCTTCCTGATT +
Preference number: 2 (lower is better)
Translates to: GPAGHPPALRLVCIDEWARDPTG*KGSFLI
Trigger: AATCAGGAAGCTTCCCTTCCATCCTGTGGGGTCTCT...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCACTACTTTTCTACAGCTaGATGAGGGGTATGAGTGGG +
Preference number: 2 (lower is better)
Translates to: GPAGHPPALRLVCIDEWALLFYS*MRGMSG
Trigger: CCCACTCATACCCCTCATGCAGCTGTAGAAAAGTAG...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAAAGAGACCCCACAGGATaGAAGGGAAGCTTCCTGATT +
Preference number: 2 (lower is better)
Translates to: ARAHGELFVQRHRSSNHERDPTG*KGSFLI
Trigger: AATCAGGAAGCTTCCCTTCCATCCTGTGGGGTCTCT...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGACACACTTGGAACAATaGCTTTTGAACACATGGGGT +
Preference number: 2 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTTHLEQ*LLNTWG
Trigger: ACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGT...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCAGCCTGGTCTACAAAGTaGGTTCCACGACAGCCAGGG +
Preference number: 2 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSAWSTK*VPRQPG
Trigger: CCCTGGCTGTCGTGGAACTCACTTTGTAGACCAGGC...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTGCTTGTCAGAGAGGATaGCTGAGCTCACACTGGCCG +
Preference number: 2 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTACQRG*LSSHWP
Trigger: CGGCCAGTGTGAGCTCAGGCATCCTCTCTGACAAGC...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGAAAAACCAAAGCACTaGCAGCCACAGGCTACTTTT +
Preference number: 2 (lower is better)
Translates to: GPAGHPPALRLVCIDEWAEKPKH*QPQATF
Trigger: AAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTC...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATGAACACATGGGGTCATaGCCTAAGCACTTGGTGACA +
Preference number: 2 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHEHMGS*PKHLVT
Trigger: TGTCACCAAGTGCTTAGGTCATGACCCCATGTGTTC...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCAAGGCAGGTGGATTTCTaGGTTCCAGGACAGCCTGGT +
Preference number: 2 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSRQVDF*VPGQPG
Trigger: ACCAGGCTGTCCTGGAACTCAGAAATCCACCTGCCT...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCAGGGACGGATGCTGCTaGTGCTGCTGGGGTTTTTGT +
Preference number: 2 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFRDGCC*CCWGFC
Trigger: ACAAAAACCCCAGCAGCAGCAGCAGCATCCGTCCCT...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCAGTCACTCCCAAGAGATaGGCTCTCTCTAGGAAGTGG +
Preference number: 2 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSVTPKR*ALSRKW
Trigger: CCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGAC...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATTTCAGTGGGCATGTCTaGATTGACTGTCCACATTTC +
Preference number: 2 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHFSGHV*IDCPHF
Trigger: GAAATGTGGACAGTCAATCCAGACATGCCCACTGAA...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR TCA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCGAACACATGGGGTCATaGCCTAAGCACTTGGTGACA +
Preference number: 2 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFEHMGS*PKHLVT
Trigger: TGTCACCAAGTGCTTAGGTCATGACCCCATGTGTTC...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTACTGGACTTCGTCTTTaGCAAGTAAAGACCGTGGTG +
Preference number: 2 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTTGLRL*QVKTVV
Trigger: CACCACGGTCTTTACTTGCCAAAGACGAAGTCCAGT...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CCA 90 bp AAATGTCAAGAAATAACTCAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCGCTCTCTCTAGGAAGTaGGAAGCTCTGCTCCTCGTG +
Preference number: 2 (lower is better)
Translates to: KCQEITQTSGSLKNQSTGALSRK*EALLLV
Trigger: CACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGC...GCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTGAGTTATTTCTTGACATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR GCA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTATGCTCTTTTCTCTATaGTGCACTTTGCTTTGTAAG +
Preference number: 2 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTMLFSL*CTLLCK
Trigger: CTTACAAAGCAAAGTGCAGCATAGAGAAAAGAGCAT...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 72 bp CAGTGCTGCGGTGGCCTGGGTGTCAACCTCTGCCCTTaGGGAGCTGTGGGGGAGCTGCCACCAGCTAGGGCA +
Preference number: 3 (lower is better)
Translates to: QCCGGLGVNLCP*GAVGELPPARA
Trigger: TGCCCTAGCTGGTGGCAGCTCCCCCACAGCTCCCCAAGGGCAGAGGTTGACACCCAGGCCACCGCAGCACTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp CTGTCTGTGCACCTGGCTGGCAACATAGCCACTGCCTaGTCCCTCAGGTCAGGGCCAGAGCTCCACCCAGGC +
Preference number: 3 (lower is better)
Translates to: LSVHLAGNIATA*SLRSGPELHPG
Trigger: GCCTGGGTGGAGCTCTGGCCCTGACCTGAGGGAGCAGGCAGTGGCTATGTTGCCAGCCAGGTGCACAGACAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp TCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTaGGGTGGCCTGGGTGTCAACCTCTGCCCTTGGGGA +
Preference number: 3 (lower is better)
Translates to: STKCLQHSERQC*GGLGVNLCPWG
Trigger: TCCCCAAGGGCAGAGGTTGACACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp CGATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTaGTGCGGTGGCCTGGGTGTCAACCTCTGCCCTTGG +
Preference number: 3 (lower is better)
Translates to: RSTKCLQHSERQ*CGGLGVNLCPW
Trigger: CCAAGGGCAGAGGTTGACACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATCG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp TTGGCTGTCTGTGCACCTGGCTGGCAACATAGCCACTaGCTGCTCCCTCAGGTCAGGGCCAGAGCTCCACCC +
Preference number: 3 (lower is better)
Translates to: LAVCAPGWQHSH*LLPQVRARAPP
Trigger: GGGTGGAGCTCTGGCCCTGACCTGAGGGAGCAGGCAGTGGCTATGTTGCCAGCCAGGTGCACAGACAGCCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 72 bp TGTCCTCACAGGCTGGGTGGGGTCCCTAGCCGCCCTTaGCTGTCTGTGCACCTGGCTGGCAACATAGCCACT +
Preference number: 3 (lower is better)
Translates to: CPHRLGGVPSRP*LSVHLAGNIAT
Trigger: AGTGGCTATGTTGCCAGCCAGGTGCACAGACAGCCAAGGGCGGCTAGGGACCCCACCCAGCCTGTGAGGACA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp GCGGGGAAGCAGGCCCCTGACAGTGGGCGGTGCTCCTaGTCTGAATGTGGCCGACTGGAAGCTGATGTAAAG +
Preference number: 3 (lower is better)
Translates to: AGKQAPDSGRCS*SECGRLEADVK
Trigger: CTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCCACTGTCAGGGGCCTGCTTCCCCGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp TTCTACAGCTGCATGAGGGGTATGAGTGGGACAAGCTaGTGTCCTCACAGGCTGGGTGGGGTCCCTAGCCGC +
Preference number: 3 (lower is better)
Translates to: FYSCMRGMSGTS*CPHRLGGVPSR
Trigger: GCGGCTAGGGACCCCACCCAGCCTGTGAGGACAGCAGCTTGTCCCACTCATACCCCTCATGCAGCTGTAGAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 72 bp CTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTaGAGCGCTGAGCCTTTCCTCCGAGCTGTGAGCCTC +
Preference number: 3 (lower is better)
Translates to: LRLVCIDEWAGP*SAEPFLRAVSL
Trigger: GAGGCTCACAGCTCGGAGGAAAGGCTCAGCGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 72 bp TCTTCCCGGAAGCTTCCAACAGAGGCCTGCTCTCTCTaGGGATGGTGGGAACCAGCTCAGGCTGGAACCAGC +
Preference number: 3 (lower is better)
Translates to: SSRKLPTEACSL*GWWEPAQAGTS
Trigger: GCTGGTTCCAGCCTGAGCTGGTTCCCACCATCCCCAGAGAGAGCAGGCCTCTGTTGGAAGCTTCCGGGAAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR TCA 72 bp TGCAGCGCCACAGGAGTTCTAATCATGAACTACCCGTaGGGGGATGGGGACACGGAGGCCCTGCGTCTTACC +
Preference number: 3 (lower is better)
Translates to: CSATGVLIMNYP*GDGDTEALRLT
Trigger: GGTAAGACGCAGGGCCTCCGTGTCCCCATCCCCTCACGGGTAGTTCATGATTAGAACTCCTGTGGCGCTGCA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp GCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTaGACATGGAGAGACCCCACAGGATGGAAGGGAAGC +
Preference number: 3 (lower is better)
Translates to: ALSLGSGKLCSS*TWRDPTGWKGS
Trigger: GCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 72 bp CATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTaGGCAGGCCCCTGGAGCGCTGAGCCTTTCCTCCGA +
Preference number: 3 (lower is better)
Translates to: HPPALRLVCIDE*AGPWSAEPFLR
Trigger: TCGGAGGAAAGGCTCAGCGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCGAAGAGCAGTCATCCTaGGAGCACGCAGAAAAGCTT +
Preference number: 3 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECEEQSS*EHAEKL
Trigger: AAGCTTTTCTGCGTGCTCCAAGGATGACTGCTCTTC...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCCACTGGACTTCGTCTTaGGCAAGTAAAGACCGTGGT +
Preference number: 3 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECHWTSS*ASKDRG
Trigger: ACCACGGTCTTTACTTGCCAAAGACGAAGTCCAGTG...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR TCA 72 bp GGTGCTGAGGCCACAGTGCCTTCCGGGAACGGAGCTTaGGGCAGGGCCTGCTCCATTAATTGTGTCTTCATC +
Preference number: 3 (lower is better)
Translates to: GAEATVPSGNGA*GRACSINCVFI
Trigger: GATGAAGACACAATTAATGGAGCAGGCCCTGCCTCAAGCTCCGTTCCCGGAAGGCACTGTGGCCTCAGCACC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp GACCCCACAGGATGGAAGGGAAGCTTCCTGATTGACTaGACGATGCTTGGAAGGGACGGATGCTGCTGCTGC +
Preference number: 3 (lower is better)
Translates to: DPTGWKGSFLID*TMLGRDGCCCC
Trigger: GCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGTGGGGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp AGCTGCCACCAGCTAGGGCACACGGGGAACTCTTCGTaGAGCGCCACAGGAGTTCTAATCATGAACTACCCG +
Preference number: 3 (lower is better)
Translates to: SCHQLGHTGNSS*SATGVLIMNYP
Trigger: CGGGTAGTTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGCTGGTGGCAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGAAATGGATCCGCTCCTaGTCACTCCCAAGAGATGCG +
Preference number: 3 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGAKWIRS*SLPRDA
Trigger: CGCATCTCTTGGGAGTGACAAGGAGCGGATCCATTT...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 72 bp CACAGGAGTTCTAATCATGAACTACCCGTGAGGGGATaGGGACACGGAGGCCCTGCGTCTTACCTGGGAAGA +
Preference number: 3 (lower is better)
Translates to: HRSSNHELPVRG*GHGGPASYLGR
Trigger: TCTTCCCAGGTAAGACGCAGGGCCTCCGTGTCCCCATCCCCTCACGGGTAGTTCATGATTAGAACTCCTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 72 bp TCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGATaGGCAGCCTGTTCAGTGGGCATGTCTGGATTGACT +
Preference number: 3 (lower is better)
Translates to: SCAGYRPQRRLR*AACSVGMSGLT
Trigger: AGTCAATCCAGACATGCCCACTGAACAGGCTGCCCATCTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 72 bp AGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTaGAGCACGCAGAAAAGCTTGTCAGAGAGGATGCCT +
Preference number: 3 (lower is better)
Translates to: SSREPARKSSHP*STQKSLSERMP
Trigger: AGGCATCCTCTCTGACAAGCTTTTCTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAAAATGGATCCGCTCCTaGTCACTCCCAAGAGATGCG +
Preference number: 3 (lower is better)
Translates to: GPAGHPPALRLVCIDEWAKWIRS*SLPRDA
Trigger: CGCATCTCTTGGGAGTGACAAGGAGCGGATCCATTT...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR TCA 72 bp CCACACAGGGCCTTCAGCCTGAGGAGGACATGGGACTaGCTGGTGTTCTTGAGAGCGTCTGGAAATGCTGTA +
Preference number: 3 (lower is better)
Translates to: PHRAFSLRRTWD*LVFLRASGNAV
Trigger: TACAGCATTTCCAGACGCTCTCAAGAACACCAGTCAGTCCCATGTCCTCCTCAGGCTGAAGGCCCTGTGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 72 bp TCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTaGAGGATGTCAGCAGCACGGCCTGTGAAACTGACT +
Preference number: 3 (lower is better)
Translates to: SYLGRHPSRGAV*RMSAARPVKLT
Trigger: AGTCAGTTTCACAGGCCGTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 72 bp AGGAAAGGAAACTGCACTGCGAGCCCACCGAAGCTGTaGAGGATGAAAACACGCGGCTTTCAGGCTGCATTC +
Preference number: 3 (lower is better)
Translates to: RKGNCTASPPKL*RMKTRGFQAAF
Trigger: GAATGCAGCCTGAAAGCCGCGTGTTTTCATCCTCCACAGCTTCGGTGGGCTCGCAGTGCAGTTTCCTTTCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGCAAACTTCTGGTTCCTaGAAAAACCAAAGCACTGGC +
Preference number: 3 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAEQTSGS*KNQSTG
Trigger: GCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTCAAACTTCTGGTTCCTaGAAAAACCAAAGCACTGGC +
Preference number: 3 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGQTSGS*KNQSTG
Trigger: GCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR TCA 72 bp ATCCCAGCACTCAGGAGGCAGAGGCAGGTGGATTTCTaGGTTCCAGGACAGCCTGGTCTACAAAGTGAGTTC +
Preference number: 3 (lower is better)
Translates to: IPALRRQRQVDF*VPGQPGLQSEF
Trigger: GAACTCACTTTGTAGACCAGGCTGTCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCCTGAGTGCTGGGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp CAAAGCACTGGCAGCCACAGGCTACTTTTCTACAGCTaGATGAGGGGTATGAGTGGGACAAGCTGCTGTCCT +
Preference number: 3 (lower is better)
Translates to: QSTGSHRLLFYS*MRGMSGTSCCP
Trigger: AGGACAGCAGCTTGTCCCACTCATACCCCTCATGCAGCTGTAGAAAAGTAGCCTGTGGCTGCCAGTGCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp TGTGAGCCTCACGTTGAGGTGATGCTGTCTCCAGGATaGATTGGCCATGTTGTAAGAGGGACTATGAGGCAG +
Preference number: 3 (lower is better)
Translates to: CEPHVEVMLSPG*IGHVVRGTMRQ
Trigger: CTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGACAGCATCACCTCAACGTGAGGCTCACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp GGTGATAGCCAGCTAGGACAAAGAAGGAAAGGAAACTaGACTGCGAGCCCACCGAAGCTGTGGAGGATGAAA +
Preference number: 3 (lower is better)
Translates to: GDSQLGQRRKGN*TASPPKLWRMK
Trigger: TTTCATCCTCCACAGCTTCGGTGGGCTCGCAGTGCAGTTTCCTTTCCTTCTTTGTCCTAGCTGGCTATCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGCAGGACAGAACTAAGTaGCAAATAGGCACAAATAAG +
Preference number: 3 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGAQDRTK*QIGTNK
Trigger: CTTATTTGTGCCTATTTGCAACTTAGTTCTGTCCTG...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTCAGGACAGAACTAAGTaGCAAATAGGCACAAATAAG +
Preference number: 3 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGQDRTK*QIGTNK
Trigger: CTTATTTGTGCCTATTTGCAACTTAGTTCTGTCCTG...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACCAGGACAGAACTAAGTaGCAAATAGGCACAAATAAG +
Preference number: 3 (lower is better)
Translates to: TPKRCALSRKWEALLLVHQDRTK*QIGTNK
Trigger: CTTATTTGTGCCTATTTGCAACTTAGTTCTGTCCTG...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTAAATGGATCCGCTCCTaGTCACTCCCAAGAGATGCG +
Preference number: 3 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTKWIRS*SLPRDA
Trigger: CGCATCTCTTGGGAGTGACAAGGAGCGGATCCATTT...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCCAGGACAGAACTAAGTaGCAAATAGGCACAAATAAG +
Preference number: 3 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCQDRTK*QIGTNK
Trigger: CTTATTTGTGCCTATTTGCAACTTAGTTCTGTCCTG...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCAAATGGATCCGCTCCTaGTCACTCCCAAGAGATGCG +
Preference number: 3 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFKWIRS*SLPRDA
Trigger: CGCATCTCTTGGGAGTGACAAGGAGCGGATCCATTT...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTGAAGAGCAGTCATCCTaGGAGCACGCAGAAAAGCTT +
Preference number: 3 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTEEQSS*EHAEKL
Trigger: AAGCTTTTCTGCGTGCTCCAAGGATGACTGCTCTTC...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTCTGGCCCCGTGTTCTTaGATTTCTCAAGGACAGCAT +
Preference number: 3 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTLAPCS*ISQGQH
Trigger: ATGCTGTCCTTGAGAAATCAAAGAACACGGGGCCAG...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR-3UTR CAA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGACAGGACAGAACTAAGTaGCAAATAGGCACAAATAAG +
Preference number: 3 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGQDRTK*QIGTNK
Trigger: CTTATTTGTGCCTATTTGCAACTTAGTTCTGTCCTG...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR GCA 72 bp CTTAACACCAGGTATGCAATGCTCTTTTCTCTATGCTaGACTTTGCTTTGTAAGAGCGTGGGTGATAGCCAG +
Preference number: 3 (lower is better)
Translates to: LNTRYAMLFSLC*TLLCKSVGDSQ
Trigger: CTGGCTATCACCCACGCTCTTACAAAGCAAAGTGCAGCATAGAGAAAAGAGCATTGCATACCTGGTGTTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR CCA 72 bp AACTCAAACTTCTGGTTCCTTGAAAAACCAAAGCACTaGCAGCCACAGGCTACTTTTCTACAGCTGCATGAG +
Preference number: 3 (lower is better)
Translates to: NSNFWFLEKPKH*QPQATFLQLHE
Trigger: CTCATGCAGCTGTAGAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTGAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
3UTR TCA 72 bp GTAAAGGACAGGAAAGTTGTAACACACTTGGAACAATaGCTTTTGAACACATGGGGTCATGACCTAAGCACT +
Preference number: 3 (lower is better)
Translates to: VKDRKVVTHLEQ*LLNTWGHDLST
Trigger: AGTGCTTAGGTCATGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCCTTTAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp TGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGCCTGGAGCCAGTCTGCACCTaGCAGGCACTGGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: WEDILPEEPCGGCQQHGLEPVCT*QALAVA
Trigger: GGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTC...CAGGCCGTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGCTGGGAGAGCCTTTCTaGACTCCGACTGGAGCCGGT +
Preference number: 4 (lower is better)
Translates to: DRQSAFSTASASAAVAWVLGEPF*TPTGAG
Trigger: ACCGGCTCCAGTCGGAGTGCAGAAAGGCTCTCCCAG...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGCGGCTCTCCTCAGGGTaGCTGGCTTCTCCCATTGGG +
Preference number: 4 (lower is better)
Translates to: GTSSREPARKSSHPWSTQRLSSG*LASPIG
Trigger: CCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCG...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGCGTGGCAAGCCAGACTaGGTCAGTCTCTCGCCTGTC +
Preference number: 4 (lower is better)
Translates to: GTSSREPARKSSHPWSTQRGKPD*VSLSPV
Trigger: GACAGGCGAGAGACTGACGCAGTCTGGCTTGCCACG...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CTCCCTCAGGTCAGGGCCAGAGCTCCACCCAGGCAGAAGCGATCGACAAAGTGCCGTGGCAAGCCAGACTaGGTCAGTCTCTCGCCTGTC +
Preference number: 4 (lower is better)
Translates to: LPQVRARAPPRQKRSTKCRGKPD*VSLSPV
Trigger: GACAGGCGAGAGACTGACGCAGTCTGGCTTGCCACG...GCACTTTGTCGATCGCTTCTGCCTGGGTGGAGCTCTGGCCCTGACCTGAGGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CCAGGGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCCGTGGCAAGCCAGACTaGGTCAGTCTCTCGCCTGTC +
Preference number: 4 (lower is better)
Translates to: PGLADRFTHVQVTDPSGGRGKPD*VSLSPV
Trigger: GACAGGCGAGAGACTGACGCAGTCTGGCTTGCCACG...GCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGCCTGTGGACATGGGTCTACTaGCCCGGGCAGATGGCCGTC +
Preference number: 4 (lower is better)
Translates to: WEDILPEEPCGGCQQHGLWTWVY*PGQMAV
Trigger: GACGGCCATCTGCCCGGGGCAGTAGACCCATGTCCA...CAGGCCGTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TGGGGACACGGAGGCCCTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCCTGGGAGAGCCTTTCTaGACTCCGACTGGAGCCGGT +
Preference number: 4 (lower is better)
Translates to: WGHGGPASYLGRHPSRGALGEPF*TPTGAG
Trigger: ACCGGCTCCAGTCGGAGTGCAGAAAGGCTCTCCCAG...GGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAGGGCCTCCGTGTCCCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CCAGGGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCCTCACTTGGGAGATATaGCGCCCCAGGCTCCGATGG +
Preference number: 4 (lower is better)
Translates to: PGLADRFTHVQVTDPSGGLTWEI*RPRLRW
Trigger: CCATCGGAGCCTGGGGCGCCATATCTCCCAAGTGAG...GCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCCCTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTCGGCTCTCCTCAGGGTaGCTGGCTTCTCCCATTGGG +
Preference number: 4 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGRLSSG*LASPIG
Trigger: CCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCG...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCGAGCCAGTCTGCACCTaGCAGGCACTGGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCEPVCT*QALAVA
Trigger: GGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTC...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGAGCCAGTCTGCACCTaGCAGGCACTGGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: GPAGHPPALRLVCIDEWAEPVCT*QALAVA
Trigger: GGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTC...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGAGCCAGTCTGCACCTaGCAGGCACTGGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHEPVCT*QALAVA
Trigger: GGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTC...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGGGTAGGCACTGGACGTaGGTAGGCGGAGGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTGRHWT*VGGGKS
Trigger: GGACTTCCCTCCGCCTACTCACGTCCAGTGCCTACC...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGCGTGGCAAGCCAGACTaGGTCAGTCTCTCGCCTGTC +
Preference number: 4 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAERGKPD*VSLSPV
Trigger: GACAGGCGAGAGACTGACGCAGTCTGGCTTGCCACG...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCACCTGGACAGAGGACTaGCCTGTTGTCTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECTWTED*PVVSSW
Trigger: CCAAGAGGAGACAACAGGGCAGTCCTCTGTCCAGGT...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TGGGGACACGGAGGCCCTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCCTTGTTCTCCTGGGCTaGTCGCAGGAGCTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: WGHGGPASYLGRHPSRGALVLLG*SQELLD
Trigger: ATCCAGGAGCTCCTGCGAGCAGCCCAGGAGAACAAG...GGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAGGGCCTCCGTGTCCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGCTCACTTGGGAGATATaGCGCCCCAGGCTCCGATGG +
Preference number: 4 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAELTWEI*RPRLRW
Trigger: CCATCGGAGCCTGGGGCGCCATATCTCCCAAGTGAG...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGGGAGGCGACGTGGAGTaGAGTGCTTCCTTTTTCAGG +
Preference number: 4 (lower is better)
Translates to: DRQSAFSTASASAAVAWVGGDVE*SASFFR
Trigger: CCTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCC...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCTACTGTGGTTCTGCGTaGCAAGCCAGACTGCGTCAG +
Preference number: 4 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECYCGSA*QARLRQ
Trigger: CTGACGCAGTCTGGCTTGCCACGCAGAACCACAGTA...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGCTTGCAGTGTCCTTGTaGTCAGAGCCAGTCTGCACC +
Preference number: 4 (lower is better)
Translates to: DRQSAFSTASASAAVAWVLAVSL*SEPVCT
Trigger: GGTGCAGACTGGCTCTGACCACAAGGACACTGCAAG...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CCAGGGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTCTCGTACATGGACATaGGTCTACTGCCCCGGGCAG +
Preference number: 4 (lower is better)
Translates to: PGLADRFTHVQVTDPSGGSRTWT*VYCPGQ
Trigger: CTGCCCGGGGCAGTAGACCCATGTCCATGTACGAGA...GCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCCCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTCCCTCAGGTCAGGGCCAGAGCTCCACCCAGGCAGAAGCGATCGACAAAGTGCTCTCGTACATGGACATaGGTCTACTGCCCCGGGCAG +
Preference number: 4 (lower is better)
Translates to: LPQVRARAPPRQKRSTKCSRTWT*VYCPGQ
Trigger: CTGCCCGGGGCAGTAGACCCATGTCCATGTACGAGA...GCACTTTGTCGATCGCTTCTGCCTGGGTGGAGCTCTGGCCCTGACCTGAGGGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTCGGCTCTCCTCAGGGTaGCTGGCTTCTCCCATTGGG +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPRLSSG*LASPIG
Trigger: CCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCG...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGTAGGCACTGGACGTaGGTAGGCGGAGGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: GPAGHPPALRLVCIDEWAGRHWT*VGGGKS
Trigger: GGACTTCCCTCCGCCTACTCACGTCCAGTGCCTACC...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGTAGGCACTGGACGTaGGTAGGCGGAGGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHGRHWT*VGGGKS
Trigger: GGACTTCCCTCCGCCTACTCACGTCCAGTGCCTACC...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACGGTAGGCACTGGACGTaGGTAGGCGGAGGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHGRHWT*VGGGKS
Trigger: GGACTTCCCTCCGCCTACTCACGTCCAGTGCCTACC...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCATGGACATGGGTCTACTaGCCCGGGCAGATGGCCGTC +
Preference number: 4 (lower is better)
Translates to: GPAGHPPALRLVCIDEWAWTWVY*PGQMAV
Trigger: GACGGCCATCTGCCCGGGGCAGTAGACCCATGTCCA...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTCTGGGAGAGCCTTTCTaGACTCCGACTGGAGCCGGT +
Preference number: 4 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGLGEPF*TPTGAG
Trigger: ACCGGCTCCAGTCGGAGTGCAGAAAGGCTCTCCCAG...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGACTGGGAGAGCCTTTCTaGACTCCGACTGGAGCCGGT +
Preference number: 4 (lower is better)
Translates to: GRCSCSECGRLEADVKGGLGEPF*TPTGAG
Trigger: ACCGGCTCCAGTCGGAGTGCAGAAAGGCTCTCCCAG...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGCTGGGAGAGCCTTTCTaGACTCCGACTGGAGCCGGT +
Preference number: 4 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTLGEPF*TPTGAG
Trigger: ACCGGCTCCAGTCGGAGTGCAGAAAGGCTCTCCCAG...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTCTCACTTGGGAGATATaGCGCCCCAGGCTCCGATGG +
Preference number: 4 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGLTWEI*RPRLRW
Trigger: CCATCGGAGCCTGGGGCGCCATATCTCCCAAGTGAG...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCGTGAACTTTGTCCTGTaGGTTAGCTTTCCGCCTCCC +
Preference number: 4 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECVNFVL*VSFPPP
Trigger: GGGAGGCGGAAAGCTAACCCACAGGACAAAGTTCAC...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTCCCTCAGGTCAGGGCCAGAGCTCCACCCAGGCAGAAGCGATCGACAAAGTGCGGAGGCGACGTGGAGTaGAGTGCTTCCTTTTTCAGG +
Preference number: 4 (lower is better)
Translates to: LPQVRARAPPRQKRSTKCGGDVE*SASFFR
Trigger: CCTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCC...GCACTTTGTCGATCGCTTCTGCCTGGGTGGAGCTCTGGCCCTGACCTGAGGGAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGGCTTTGGAGGCGACGTaGAGTGGAGTGCTTCCTTTT +
Preference number: 4 (lower is better)
Translates to: DRQSAFSTASASAAVAWVALEAT*SGVLPF
Trigger: AAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGC...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCGTTACCAAGGTACTGTaGTTCTGCGTGGCAAGCCAG +
Preference number: 4 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECVTKVL*FCVASQ
Trigger: CTGGCTTGCCACGCAGAACCACAGTACCTTGGTAAC...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGGTTACCAAGGTACTGTaGTTCTGCGTGGCAAGCCAG +
Preference number: 4 (lower is better)
Translates to: DRQSAFSTASASAAVAWVVTKVL*FCVASQ
Trigger: CTGGCTTGCCACGCAGAACCACAGTACCTTGGTAAC...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGATCCAGTCTCGTACATaGACATGGGTCTACTGCCCC +
Preference number: 4 (lower is better)
Translates to: DRQSAFSTASASAAVAWVIQSRT*TWVYCP
Trigger: GGGGCAGTAGACCCATGTCCATGTACGAGACTGGAT...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGCCTGGCTGGCTTCTCCCATTaGGAGGTATGGCTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: WEDILPEEPCGGCQQHGLAGFSH*EVWLLA
Trigger: GGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGC...CAGGCCGTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCCGGCTCTCCTCAGGGTaGCTGGCTTCTCCCATTGGG +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCRLSSG*LASPIG
Trigger: CCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCG...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACCGGCTCTCCTCAGGGTaGCTGGCTTCTCCCATTGGG +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHRLSSG*LASPIG
Trigger: CCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCG...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCACGGCTCTCCTCAGGGTaGCTGGCTTCTCCCATTGGG +
Preference number: 4 (lower is better)
Translates to: GPAGHPPALRLVCIDEWARLSSG*LASPIG
Trigger: CCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCG...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GTCACTGAGGTCAGGGCAGAGCCCCTGCGCTGTGCCGTTAAGAGTCCCGAGTGCGCTCGCAGGAGCTCCTaGATGTTTTTGGTGATCTGC +
Preference number: 4 (lower is better)
Translates to: VTEVRAEPLRCAVKSPECARRSS*MFLVIC
Trigger: GCAGATCACCAAAAACATCCAGGAGCTCCTGCGAGC...GCACTCGGGACTCTTAACGGCACAGCGCAGGGGCTCTGCCCTGACCTCAGTGAC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CCAGGGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCCATCTGTGGGTAAGCTaGAGTCTCCTGGGAGAGCCT +
Preference number: 4 (lower is better)
Translates to: PGLADRFTHVQVTDPSGGHLWVS*SLLGEP
Trigger: AGGCTCTCCCAGGAGACTCCAGCTTACCCACAGATG...GCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCCCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTTCTGCTTCTCCAGTCTaGAGGCCCTTCGGGCGCTTT +
Preference number: 4 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGSASPV*RPFGRF
Trigger: AAAGCGCCCGAAGGGCCTCCAGACTGGAGAAGCAGA...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000112185.9
CDS-3UTR TCA 90 bp CCAGGGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCAGTTCCCCTATTTACTaGCGCCCAGGAAGGATCAGG +
Preference number: 4 (lower is better)
Translates to: PGLADRFTHVQVTDPSGGSSPIY*RPGRIR
Trigger: CCTGATCCTTCCTGGGCGTCAGTAAATAGGGGAACT...GCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCCCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGAGTTCCCCTATTTACTaGCGCCCAGGAAGGATCAGG +
Preference number: 4 (lower is better)
Translates to: GTSSREPARKSSHPWSTQSSPIY*RPGRIR
Trigger: CCTGATCCTTCCTGGGCGTCAGTAAATAGGGGAACT...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGAGGAGTACTCAGGGTTaGCCGGAAGGAAAGGGACGA +
Preference number: 4 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAERSTQG*PEGKGR
Trigger: TCGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCT...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTAGGAGTACTCAGGGTTaGCCGGAAGGAAAGGGACGA +
Preference number: 4 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGRSTQG*PEGKGR
Trigger: TCGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCT...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGCTCCACATTGTCTTTTaGCCTGGACAGAGGACTGCC +
Preference number: 4 (lower is better)
Translates to: GTSSREPARKSSHPWSTQLHIVF*PGQRTA
Trigger: GGCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAG...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTCCCTCAGGTCAGGGCCAGAGCTCCACCCAGGCAGAAGCGATCGACAAAGTGCCTCCACATTGTCTTTTaGCCTGGACAGAGGACTGCC +
Preference number: 4 (lower is better)
Translates to: LPQVRARAPPRQKRSTKCLHIVF*PGQRTA
Trigger: GGCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAG...GCACTTTGTCGATCGCTTCTGCCTGGGTGGAGCTCTGGCCCTGACCTGAGGGAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGCCTGGATGTTTTTGGTaGTCTGCTCGGTCTTCCGGA +
Preference number: 4 (lower is better)
Translates to: GTSSREPARKSSHPWSTQPGCFW*SARSSG
Trigger: TCCGGAAGACCGAGCAGATCACCAAAAACATCCAGG...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGGGTAGGCACTGGACGTaGGTAGGCGGAGGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSGRHWT*VGGGKS
Trigger: GGACTTCCCTCCGCCTACTCACGTCCAGTGCCTACC...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCGGTAGGCACTGGACGTaGGTAGGCGGAGGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCGRHWT*VGGGKS
Trigger: GGACTTCCCTCCGCCTACTCACGTCCAGTGCCTACC...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGCCTGAAGGTACTGTGGTTCTaGGTGGCAAGCCAGACTGCG +
Preference number: 4 (lower is better)
Translates to: WEDILPEEPCGGCQQHGLKVLWF*VASQTA
Trigger: CGCAGTCTGGCTTGCCACGCAGAACCACAGTACCTT...CAGGCCGTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGACCTGGACAGAGGACTaGCCTGTTGTCTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAETWTED*PVVSSW
Trigger: CCAAGAGGAGACAACAGGGCAGTCCTCTGTCCAGGT...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTACCTGGACAGAGGACTaGCCTGTTGTCTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGTWTED*PVVSSW
Trigger: CCAAGAGGAGACAACAGGGCAGTCCTCTGTCCAGGT...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGGACATGGGTCTACTaGCCCGGGCAGATGGCCGTC +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSWTWVY*PGQMAV
Trigger: GACGGCCATCTGCCCGGGGCAGTAGACCCATGTCCA...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGACTTGTTCTCCTGGGCTaGTCGCAGGAGCTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: GRCSCSECGRLEADVKGGLVLLG*SQELLD
Trigger: ATCCAGGAGCTCCTGCGAGCAGCCCAGGAGAACAAG...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGACTGGGAGAGCCTTTCTaGACTCCGACTGGAGCCGGT +
Preference number: 4 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGLGEPF*TPTGAG
Trigger: ACCGGCTCCAGTCGGAGTGCAGAAAGGCTCTCCCAG...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGTGCTGTGTGACCAGCTaGACATCTGTGGGTAAGCTG +
Preference number: 4 (lower is better)
Translates to: GTSSREPARKSSHPWSTQCCVTS*TSVGKL
Trigger: CAGCTTACCCACAGATGTGCAGCTGGTCACACAGCA...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACCTCACTTGGGAGATATaGCGCCCCAGGCTCCGATGG +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHLTWEI*RPRLRW
Trigger: CCATCGGAGCCTGGGGCGCCATATCTCCCAAGTGAG...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGGGAGGCGACGTGGAGTaGAGTGCTTCCTTTTTCAGG +
Preference number: 4 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAEGGDVE*SASFFR
Trigger: CCTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCC...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGCCTGCTTGCAGTGTCCTTGTaGTCAGAGCCAGTCTGCACC +
Preference number: 4 (lower is better)
Translates to: WEDILPEEPCGGCQQHGLLAVSL*SEPVCT
Trigger: GGTGCAGACTGGCTCTGACCACAAGGACACTGCAAG...CAGGCCGTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTGCTGGCTTCTCCCATTaGGAGGTATGGCTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGAGFSH*EVWLLA
Trigger: GGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGC...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AATCATGAACTACCCGTGAGGGGATGGGGACACGGAGGCCCTGCGTCTTACCTGGCTGGCTTCTCCCATTaGGAGGTATGGCTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: NHELPVRGWGHGGPASYLAGFSH*EVWLLA
Trigger: GGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGC...CAGGTAAGACGCAGGGCCTCCGTGTCCCCATCCCCTCACGGGTAGTTCATGATT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTGCTGGCTTCTCCCATTaGGAGGTATGGCTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPAGFSH*EVWLLA
Trigger: GGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGC...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGTCATGCTTGTTCTCCTaGGCTGCTCGCAGGAGCTCC +
Preference number: 4 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTSCLFS*AARRSS
Trigger: GGAGCTCCTGCGAGCAGCCCAGGAGAACAAGCATGA...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTGCTGTTTGGCGGCCTTaGCGATGTCATAGGCACACT +
Preference number: 4 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGAVWRP*RCHRHT
Trigger: AGTGTGCCTATGACATCGCCAAGGCCGCCAAACAGC...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGCCCTGTTCTCACACTTaGATGGAGTTGCTTACTGAG +
Preference number: 4 (lower is better)
Translates to: DRQSAFSTASASAAVAWVPCSHT*MELLTE
Trigger: CTCAGTAAGCAACTCCATTCAAGTGTGAGAACAGGG...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTCCTGGATGTTTTTGGTaGTCTGCTCGGTCTTCCGGA +
Preference number: 4 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGPGCFW*SARSSG
Trigger: TCCGGAAGACCGAGCAGATCACCAAAAACATCCAGG...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CTCCCTCAGGTCAGGGCCAGAGCTCCACCCAGGCAGAAGCGATCGACAAAGTGCCAGGGTTGGAGGCCATaGTGTGTGTTTAAGATGCCT +
Preference number: 4 (lower is better)
Translates to: LPQVRARAPPRQKRSTKCQGWRP*CVFKMP
Trigger: AGGCATCTTAAACACACAGCATGGCCTCCAACCCTG...GCACTTTGTCGATCGCTTCTGCCTGGGTGGAGCTCTGGCCCTGACCTGAGGGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCCGTGGCAAGCCAGACTaGGTCAGTCTCTCGCCTGTC +
Preference number: 4 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCRGKPD*VSLSPV
Trigger: GACAGGCGAGAGACTGACGCAGTCTGGCTTGCCACG...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGAAAGGTACTGTGGTTCTaGGTGGCAAGCCAGACTGCG +
Preference number: 4 (lower is better)
Translates to: GRCSCSECGRLEADVKGGKVLWF*VASQTA
Trigger: CGCAGTCTGGCTTGCCACGCAGAACCACAGTACCTT...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTGGAGGCGACGTGGAGTaGAGTGCTTCCTTTTTCAGG +
Preference number: 4 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGGGDVE*SASFFR
Trigger: CCTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCC...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGGCTTTGGAGGCGACGTaGAGTGGAGTGCTTCCTTTT +
Preference number: 4 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAEALEAT*SGVLPF
Trigger: AAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGC...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTCGTTCTGCCAACTCATaGTGCCCTCCTTGCCTTGCA +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPRSANS*CPPCLA
Trigger: TGCAAGGCAAGGAGGGCACCATGAGTTGGCAGAACG...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTCGTTCTGCCAACTCATaGTGCCCTCCTTGCCTTGCA +
Preference number: 4 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGRSANS*CPPCLA
Trigger: TGCAAGGCAAGGAGGGCACCATGAGTTGGCAGAACG...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTTACTGTGGTTCTGCGTaGCAAGCCAGACTGCGTCAG +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPYCGSA*QARLRQ
Trigger: CTGACGCAGTCTGGCTTGCCACGCAGAACCACAGTA...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGCACACTGTCATAGTCTaGCTGGTCGTTGTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: GTSSREPARKSSHPWSTQHTVIV*LVVVLA
Trigger: AGCCAAGACAACGACCAGCCAGACTATGACAGTGTG...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AATCATGAACTACCCGTGAGGGGATGGGGACACGGAGGCCCTGCGTCTTACCTGCTTGCAGTGTCCTTGTaGTCAGAGCCAGTCTGCACC +
Preference number: 4 (lower is better)
Translates to: NHELPVRGWGHGGPASYLLAVSL*SEPVCT
Trigger: GGTGCAGACTGGCTCTGACCACAAGGACACTGCAAG...CAGGTAAGACGCAGGGCCTCCGTGTCCCCATCCCCTCACGGGTAGTTCATGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCATCTCGTACATGGACATaGGTCTACTGCCCCGGGCAG +
Preference number: 4 (lower is better)
Translates to: GPAGHPPALRLVCIDEWASRTWT*VYCPGQ
Trigger: CTGCCCGGGGCAGTAGACCCATGTCCATGTACGAGA...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTCTCGTACATGGACATaGGTCTACTGCCCCGGGCAG +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCSRTWT*VYCPGQ
Trigger: CTGCCCGGGGCAGTAGACCCATGTCCATGTACGAGA...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTGCTCGCAGGAGCTCCTaGATGTTTTTGGTGATCTGC +
Preference number: 4 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGARRSS*MFLVIC
Trigger: GCAGATCACCAAAAACATCCAGGAGCTCCTGCGAGC...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTCATGCTTGTTCTCCTaGGCTGCTCGCAGGAGCTCC +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCSCLFS*AARRSS
Trigger: GGAGCTCCTGCGAGCAGCCCAGGAGAACAAGCATGA...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATCATGCTTGTTCTCCTaGGCTGCTCGCAGGAGCTCC +
Preference number: 4 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGSCLFS*AARRSS
Trigger: GGAGCTCCTGCGAGCAGCCCAGGAGAACAAGCATGA...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACTCATGCTTGTTCTCCTaGGCTGCTCGCAGGAGCTCC +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHSCLFS*AARRSS
Trigger: GGAGCTCCTGCGAGCAGCCCAGGAGAACAAGCATGA...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTGCTGTTTGGCGGCCTTaGCGATGTCATAGGCACACT +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPAVWRP*RCHRHT
Trigger: AGTGTGCCTATGACATCGCCAAGGCCGCCAAACAGC...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGGCTGTTTGGCGGCCTTaGCGATGTCATAGGCACACT +
Preference number: 4 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTAVWRP*RCHRHT
Trigger: AGTGTGCCTATGACATCGCCAAGGCCGCCAAACAGC...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGGGGCGCTTTCGTCCCTaGACCAGGAAAGTGTGGAGG +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSGRFRP*TRKVWR
Trigger: CCTCCACACTTTCCTGGTCCAGGGACGAAAGCGCCC...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000112185.9
3UTR CAA 72 bp CAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTaGGAGCACGCAGAAAAGCTTGTCAGAGAGGATGCC +
Preference number: 4 (lower is better)
Translates to: QLQGACQEEQSS*EHAEKLVREDA
Trigger: GGCATCCTCTCTGACAAGCTTTTCTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CCAGGGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCCCCTGTTCTCACACTTaGATGGAGTTGCTTACTGAG +
Preference number: 4 (lower is better)
Translates to: PGLADRFTHVQVTDPSGGPCSHT*MELLTE
Trigger: CTCAGTAAGCAACTCCATTCAAGTGTGAGAACAGGG...GCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCCCTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCAGGAGTACTCAGGGTTaGCCGGAAGGAAAGGGACGA +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCRSTQG*PEGKGR
Trigger: TCGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCT...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGAAGGAGTACTCAGGGTTaGCCGGAAGGAAAGGGACGA +
Preference number: 4 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGRSTQG*PEGKGR
Trigger: TCGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCT...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTCTCCACATTGTCTTTTaGCCTGGACAGAGGACTGCC +
Preference number: 4 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGLHIVF*PGQRTA
Trigger: GGCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAG...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGGTATGGCTTCTGGCCTaGTCCAGTCTCGTACATGGA +
Preference number: 4 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGAVWLLA*SSLVHG
Trigger: TCCATGTACGAGACTGGATCAGGCCAGAAGCCATAC...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTGTATGGCTTCTGGCCTaGTCCAGTCTCGTACATGGA +
Preference number: 4 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGVWLLA*SSLVHG
Trigger: TCCATGTACGAGACTGGATCAGGCCAGAAGCCATAC...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTCCCTCAGGTCAGGGCCAGAGCTCCACCCAGGCAGAAGCGATCGACAAAGTGCAACGTGTATCCTCTCTaGGCAGGGAATATAGCTGTC +
Preference number: 4 (lower is better)
Translates to: LPQVRARAPPRQKRSTKCNVYPL*AGNIAV
Trigger: GACAGCTATATTCCCTGCTCAGAGAGGATACACGTT...GCACTTTGTCGATCGCTTCTGCCTGGGTGGAGCTCTGGCCCTGACCTGAGGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp TGGGGACACGGAGGCCCTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCAACGTGTATCCTCTCTaGGCAGGGAATATAGCTGTC +
Preference number: 4 (lower is better)
Translates to: WGHGGPASYLGRHPSRGANVYPL*AGNIAV
Trigger: GACAGCTATATTCCCTGCTCAGAGAGGATACACGTT...GGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAGGGCCTCCGTGTCCCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTTTCTATGAGGCGTTCTaGCAACTCATGGTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGFYEAF*QLMVPS
Trigger: GGAGGGCACCATGAGTTGGCAGAACGCCTCATAGAA...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACAAGGTACTGTGGTTCTaGGTGGCAAGCCAGACTGCG +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHKVLWF*VASQTA
Trigger: CGCAGTCTGGCTTGCCACGCAGAACCACAGTACCTT...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGAACCTGGACAGAGGACTaGCCTGTTGTCTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGTWTED*PVVSSW
Trigger: CCAAGAGGAGACAACAGGGCAGTCCTCTGTCCAGGT...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAACCTGGACAGAGGACTaGCCTGTTGTCTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: GPAGHPPALRLVCIDEWATWTED*PVVSSW
Trigger: CCAAGAGGAGACAACAGGGCAGTCCTCTGTCCAGGT...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCCTTGTTCTCCTGGGCTaGTCGCAGGAGCTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCLVLLG*SQELLD
Trigger: ATCCAGGAGCTCCTGCGAGCAGCCCAGGAGAACAAG...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACGCACACTGGATGACCTaGTGTGTGACCAGCTGCACA +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHAHWMT*CVTSCT
Trigger: TGTGCAGCTGGTCACACAGCAGGTCATCCAGTGTGC...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCGCACACTGGATGACCTaGTGTGTGACCAGCTGCACA +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCAHWMT*CVTSCT
Trigger: TGTGCAGCTGGTCACACAGCAGGTCATCCAGTGTGC...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTTTAAGATGCCTCACTTaGGAGATATGGCGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGLRCLT*EIWRPR
Trigger: CCTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAA...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTCATCTGGAGCAGGGTTaGAGGCCATGCTGTGTGTTT +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPHLEQG*RPCCVF
Trigger: AAACACACAGCATGGCCTCCAACCCTGCTCCAGATG...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACCGTTCTGCCAACTCATaGTGCCCTCCTTGCCTTGCA +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHRSANS*CPPCLA
Trigger: TGCAAGGCAAGGAGGGCACCATGAGTTGGCAGAACG...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCATACTGTGGTTCTGCGTaGCAAGCCAGACTGCGTCAG +
Preference number: 4 (lower is better)
Translates to: GPAGHPPALRLVCIDEWAYCGSA*QARLRQ
Trigger: CTGACGCAGTCTGGCTTGCCACGCAGAACCACAGTA...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGGTTACCAAGGTACTGTaGTTCTGCGTGGCAAGCCAG +
Preference number: 4 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGAVTKVL*FCVASQ
Trigger: CTGGCTTGCCACGCAGAACCACAGTACCTTGGTAAC...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCCTTGCAGTGTCCTTGTaGTCAGAGCCAGTCTGCACC +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCLAVSL*SEPVCT
Trigger: GGTGCAGACTGGCTCTGACCACAAGGACACTGCAAG...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGACTTGCAGTGTCCTTGTaGTCAGAGCCAGTCTGCACC +
Preference number: 4 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGLAVSL*SEPVCT
Trigger: GGTGCAGACTGGCTCTGACCACAAGGACACTGCAAG...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTATCCAGTCTCGTACATaGACATGGGTCTACTGCCCC +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPIQSRT*TWVYCP
Trigger: GGGGCAGTAGACCCATGTCCATGTACGAGACTGGAT...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGATCCAGTCTCGTACATaGACATGGGTCTACTGCCCC +
Preference number: 4 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTIQSRT*TWVYCP
Trigger: GGGGCAGTAGACCCATGTCCATGTACGAGACTGGAT...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGGCTGGCTTCTCCCATTaGGAGGTATGGCTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSAGFSH*EVWLLA
Trigger: GGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGC...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGGCTCGCAGGAGCTCCTaGATGTTTTTGGTGATCTGC +
Preference number: 4 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGAARRSS*MFLVIC
Trigger: GCAGATCACCAAAAACATCCAGGAGCTCCTGCGAGC...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTGCTCGCAGGAGCTCCTaGATGTTTTTGGTGATCTGC +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPARRSS*MFLVIC
Trigger: GCAGATCACCAAAAACATCCAGGAGCTCCTGCGAGC...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAATCATGCTTGTTCTCCTaGGCTGCTCGCAGGAGCTCC +
Preference number: 4 (lower is better)
Translates to: ARAHGELFVQRHRSSNHESCLFS*AARRSS
Trigger: GGAGCTCCTGCGAGCAGCCCAGGAGAACAAGCATGA...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACCCAGCTGCACATCTGTaGGTAAGCTGGAGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHPAAHL*VSWSLL
Trigger: CAGGAGACTCCAGCTTACCCACAGATGTGCAGCTGG...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTCTGCTTCTCCAGTCTaGAGGCCCTTCGGGCGCTTT +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSSASPV*RPFGRF
Trigger: AAAGCGCCCGAAGGGCCTCCAGACTGGAGAAGCAGA...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000112185.9
3UTR CAA 72 bp AGGAAGAGCAGTCATCCTTGGAGCACGCAGAAAAGCTaGTCAGAGAGGATGCCTGAGCTCACACTGGCCGGC +
Preference number: 4 (lower is better)
Translates to: RKSSHPWSTQKS*SERMPELTLAG
Trigger: GCCGGCCAGTGTGAGCTCAGGCATCCTCTCTGACAAGCTTTTCTGCGTGCTCCAAGGATGACTGCTCTTCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCTCCACATTGTCTTTTaGCCTGGACAGAGGACTGCC +
Preference number: 4 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQLHIVF*PGQRTA
Trigger: GGCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAG...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGTATGGCTTCTGGCCTaGTCCAGTCTCGTACATGGA +
Preference number: 4 (lower is better)
Translates to: GPAGHPPALRLVCIDEWAVWLLA*SSLVHG
Trigger: TCCATGTACGAGACTGGATCAGGCCAGAAGCCATAC...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGAGTATGGCTTCTGGCCTaGTCCAGTCTCGTACATGGA +
Preference number: 4 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGVWLLA*SSLVHG
Trigger: TCCATGTACGAGACTGGATCAGGCCAGAAGCCATAC...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGGTATGGCTTCTGGCCTaGTCCAGTCTCGTACATGGA +
Preference number: 4 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQVWLLA*SSLVHG
Trigger: TCCATGTACGAGACTGGATCAGGCCAGAAGCCATAC...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGTATGGCTTCTGGCCTaGTCCAGTCTCGTACATGGA +
Preference number: 4 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHVWLLA*SSLVHG
Trigger: TCCATGTACGAGACTGGATCAGGCCAGAAGCCATAC...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACTTCTATGAGGCGTTCTaGCAACTCATGGTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHFYEAF*QLMVPS
Trigger: GGAGGGCACCATGAGTTGGCAGAACGCCTCATAGAA...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TGGGGACACGGAGGCCCTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCCTTCTTCGCAGCTTTTaGCAACTCAGACAAATCCAG +
Preference number: 4 (lower is better)
Translates to: WGHGGPASYLGRHPSRGALLRSF*QLRQIQ
Trigger: CTGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAG...GGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAGGGCCTCCGTGTCCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGTGCTGTGTGACCAGCTaGACATCTGTGGGTAAGCTG +
Preference number: 4 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQCCVTS*TSVGKL
Trigger: CAGCTTACCCACAGATGTGCAGCTGGTCACACAGCA...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGGCACACTGGATGACCTaGTGTGTGACCAGCTGCACA +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSAHWMT*CVTSCT
Trigger: TGTGCAGCTGGTCACACAGCAGGTCATCCAGTGTGC...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCCATCTGGAGCAGGGTTaGAGGCCATGCTGTGTGTTT +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCHLEQG*RPCCVF
Trigger: AAACACACAGCATGGCCTCCAACCCTGCTCCAGATG...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGACATCTGGAGCAGGGTTaGAGGCCATGCTGTGTGTTT +
Preference number: 4 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGHLEQG*RPCCVF
Trigger: AAACACACAGCATGGCCTCCAACCCTGCTCCAGATG...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACGTGAACTTTGTCCTGTaGGTTAGCTTTCCGCCTCCC +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHVNFVL*VSFPPP
Trigger: GGGAGGCGGAAAGCTAACCCACAGGACAAAGTTCAC...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGGCTTTGGAGGCGACGTaGAGTGGAGTGCTTCCTTTT +
Preference number: 4 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQALEAT*SGVLPF
Trigger: AAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGC...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAATACTGTGGTTCTGCGTaGCAAGCCAGACTGCGTCAG +
Preference number: 4 (lower is better)
Translates to: ARAHGELFVQRHRSSNHEYCGSA*QARLRQ
Trigger: CTGACGCAGTCTGGCTTGCCACGCAGAACCACAGTA...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACGTTACCAAGGTACTGTaGTTCTGCGTGGCAAGCCAG +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHVTKVL*FCVASQ
Trigger: CTGGCTTGCCACGCAGAACCACAGTACCTTGGTAAC...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTCACACTGTCATAGTCTaGCTGGTCGTTGTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPHTVIV*LVVVLA
Trigger: AGCCAAGACAACGACCAGCCAGACTATGACAGTGTG...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCATCCAGTCTCGTACATaGACATGGGTCTACTGCCCC +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCIQSRT*TWVYCP
Trigger: GGGGCAGTAGACCCATGTCCATGTACGAGACTGGAT...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGCATCTGTGGGTAAGCTaGAGTCTCCTGGGAGAGCCT +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSHLWVS*SLLGEP
Trigger: AGGCTCTCCCAGGAGACTCCAGCTTACCCACAGATG...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAACATCTGTGGGTAAGCTaGAGTCTCCTGGGAGAGCCT +
Preference number: 4 (lower is better)
Translates to: ARAHGELFVQRHRSSNHEHLWVS*SLLGEP
Trigger: AGGCTCTCCCAGGAGACTCCAGCTTACCCACAGATG...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTTAGCTGCTGTCTCTTaGCCTCAGAAGCCACTAGGG +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCLAAVS*PQKPLG
Trigger: CCCTAGTGGCTTCTGAGGCCAAGAGACAGCAGCTAA...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS-3UTR CCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCATTAGCTGCTGTCTCTTaGCCTCAGAAGCCACTAGGG +
Preference number: 4 (lower is better)
Translates to: GPAGHPPALRLVCIDEWALAAVS*PQKPLG
Trigger: CCCTAGTGGCTTCTGAGGCCAAGAGACAGCAGCTAA...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146044.8
CDS-3UTR TCA 90 bp TGGGGACACGGAGGCCCTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCACGAACGCTAACATCTaGTACTTGGCTCTGATGAAT +
Preference number: 4 (lower is better)
Translates to: WGHGGPASYLGRHPSRGATNANI*YLALMN
Trigger: ATTCATCAGAGCCAAGTATCAGATGTTAGCGTTCGT...GGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAGGGCCTCCGTGTCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTCCCTGTTCTCACACTTaGATGGAGTTGCTTACTGAG +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPPCSHT*MELLTE
Trigger: CTCAGTAAGCAACTCCATTCAAGTGTGAGAACAGGG...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp TGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGCCTGCGTACTGTATTTCTATaGGGCGTTCTGCCAACTCAT +
Preference number: 4 (lower is better)
Translates to: WEDILPEEPCGGCQQHGLRTVFL*GVLPTH
Trigger: ATGAGTTGGCAGAACGCCTCATAGAAATACAGTACG...CAGGCCGTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCCCTGGATGTTTTTGGTaGTCTGCTCGGTCTTCCGGA +
Preference number: 4 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCPGCFW*SARSSG
Trigger: TCCGGAAGACCGAGCAGATCACCAAAAACATCCAGG...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAACCTGGATGTTTTTGGTaGTCTGCTCGGTCTTCCGGA +
Preference number: 4 (lower is better)
Translates to: ARAHGELFVQRHRSSNHEPGCFW*SARSSG
Trigger: TCCGGAAGACCGAGCAGATCACCAAAAACATCCAGG...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTAACGTGTATCCTCTCTaGGCAGGGAATATAGCTGTC +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPNVYPL*AGNIAV
Trigger: GACAGCTATATTCCCTGCTCAGAGAGGATACACGTT...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGAGGCTGTCTGCCCTCTaGGGAATTAGAAAGTGCTGT +
Preference number: 4 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQRLSAL*GIRKCC
Trigger: ACAGCACTTTCTAATTCCTCAGAGGGCAGACAGCCT...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112185.9
CDS-3UTR GCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGACAGGGTTGGAGGCCATaGTGTGTGTTTAAGATGCCT +
Preference number: 4 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGQGWRP*CVFKMP
Trigger: AGGCATCTTAAACACACAGCATGGCCTCCAACCCTG...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGACGACGTGGAGTGGAGTaGTTCCTTTTTCAGGATGAA +
Preference number: 4 (lower is better)
Translates to: GRCSCSECGRLEADVKGGRRGVE*FLFQDE
Trigger: TTCATCCTGAAAAAGGAAGCACTCCACTCCACGTCG...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCATGGACATGGGTCTACTaGCCCGGGCAGATGGCCGTC +
Preference number: 4 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSWTWVY*PGQMAV
Trigger: GACGGCCATCTGCCCGGGGCAGTAGACCCATGTCCA...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGAATGTTTTTGGTGATCTaGTCGGTCTTCCGGATGACG +
Preference number: 4 (lower is better)
Translates to: GRCSCSECGRLEADVKGGMFLVI*SVFRMT
Trigger: CGTCATCCGGAAGACCGAGCAGATCACCAAAAACAT...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp AATCATGAACTACCCGTGAGGGGATGGGGACACGGAGGCCCTGCGTCTTACCTGATGTTTTTGGTGATCTaGTCGGTCTTCCGGATGACG +
Preference number: 4 (lower is better)
Translates to: NHELPVRGWGHGGPASYLMFLVI*SVFRMT
Trigger: CGTCATCCGGAAGACCGAGCAGATCACCAAAAACAT...CAGGTAAGACGCAGGGCCTCCGTGTCCCCATCCCCTCACGGGTAGTTCATGATT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTATGTTTTTGGTGATCTaGTCGGTCTTCCGGATGACG +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPMFLVI*SVFRMT
Trigger: CGTCATCCGGAAGACCGAGCAGATCACCAAAAACAT...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAATGCTGTGTGACCAGCTaGACATCTGTGGGTAAGCTG +
Preference number: 4 (lower is better)
Translates to: ARAHGELFVQRHRSSNHECCVTS*TSVGKL
Trigger: CAGCTTACCCACAGATGTGCAGCTGGTCACACAGCA...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGACCTCCATAAATTCCTaGACAGTGACTGGTCCATCT +
Preference number: 4 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAETSINS*TVTGPS
Trigger: AGATGGACCAGTCACTGTGCAGGAATTTATGGAGGT...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146044.8
CDS-3UTR GCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACAGAGGAGGTCACAAGTaGACTCCTCCCAATATGCGT +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHRGGHK*TPPNMR
Trigger: ACGCATATTGGGAGGAGTGCACTTGTGACCTCCTCT...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000112185.9
CDS-3UTR GCA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACAGAGGAGGTCACAAGTaGACTCCTCCCAATATGCGT +
Preference number: 4 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHRGGHK*TPPNMR
Trigger: ACGCATATTGGGAGGAGTGCACTTGTGACCTCCTCT...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000112185.9
CDS-3UTR CCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTTAAGATGCCTCACTTaGGAGATATGGCGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSLRCLT*EIWRPR
Trigger: CCTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAA...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAACATCTGGAGCAGGGTTaGAGGCCATGCTGTGTGTTT +
Preference number: 4 (lower is better)
Translates to: ARAHGELFVQRHRSSNHEHLEQG*RPCCVF
Trigger: AAACACACAGCATGGCCTCCAACCCTGCTCCAGATG...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCTGAGCAGGATGAAAGAAGTTaGCTTGGGCTCCTAAAGACA +
Preference number: 4 (lower is better)
Translates to: GWLTGSLMCRLQTPAEAEQDERS*LGLLKT
Trigger: TGTCTTTAGGAGCCCAAGCCAACTTCTTTCATCCTG...CTCAGCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGAGGAGGCGACGTGGAGTaGAGTGCTTCCTTTTTCAGG +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGGGDVE*SASFFR
Trigger: CCTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCC...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAAGTTACCAAGGTACTGTaGTTCTGCGTGGCAAGCCAG +
Preference number: 4 (lower is better)
Translates to: ARAHGELFVQRHRSSNHEVTKVL*FCVASQ
Trigger: CTGGCTTGCCACGCAGAACCACAGTACCTTGGTAAC...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AATCATGAACTACCCGTGAGGGGATGGGGACACGGAGGCCCTGCGTCTTACCTGAGCGTAGCAAACTCGTaGGCGTTAAACCGAGCTAAT +
Preference number: 4 (lower is better)
Translates to: NHELPVRGWGHGGPASYLSVANS*ALNRAN
Trigger: ATTAGCTCGGTTTAACGCCCACGAGTTTGCTACGCT...CAGGTAAGACGCAGGGCCTCCGTGTCCCCATCCCCTCACGGGTAGTTCATGATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTAGCGTAGCAAACTCGTaGGCGTTAAACCGAGCTAAT +
Preference number: 4 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGSVANS*ALNRAN
Trigger: ATTAGCTCGGTTTAACGCCCACGAGTTTGCTACGCT...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACCACACTGTCATAGTCTaGCTGGTCGTTGTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHHTVIV*LVVVLA
Trigger: AGCCAAGACAACGACCAGCCAGACTATGACAGTGTG...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATTCTCGTACATGGACATaGGTCTACTGCCCCGGGCAG +
Preference number: 4 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHSRTWT*VYCPGQ
Trigger: CTGCCCGGGGCAGTAGACCCATGTCCATGTACGAGA...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGAAGTTCCCCTATTTACTaGCGCCCAGGAAGGATCAGG +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGSSPIY*RPGRIR
Trigger: CCTGATCCTTCCTGGGCGTCAGTAAATAGGGGAACT...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp TGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGCCTGACGAACGCTAACATCTaGTACTTGGCTCTGATGAAT +
Preference number: 4 (lower is better)
Translates to: WEDILPEEPCGGCQQHGLTNANI*YLALMN
Trigger: ATTCATCAGAGCCAAGTATCAGATGTTAGCGTTCGT...CAGGCCGTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACCCCTGTTCTCACACTTaGATGGAGTTGCTTACTGAG +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHPCSHT*MELLTE
Trigger: CTCAGTAAGCAACTCCATTCAAGTGTGAGAACAGGG...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCCCTGTTCTCACACTTaGATGGAGTTGCTTACTGAG +
Preference number: 4 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQPCSHT*MELLTE
Trigger: CTCAGTAAGCAACTCCATTCAAGTGTGAGAACAGGG...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGACGTACTGTATTTCTATaGGGCGTTCTGCCAACTCAT +
Preference number: 4 (lower is better)
Translates to: GRCSCSECGRLEADVKGGRTVFL*GVLPTH
Trigger: ATGAGTTGGCAGAACGCCTCATAGAAATACAGTACG...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATAGGAGTACTCAGGGTTaGCCGGAAGGAAAGGGACGA +
Preference number: 4 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHRSTQG*PEGKGR
Trigger: TCGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCT...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATTCTATGAGGCGTTCTaGCAACTCATGGTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGFYEAF*QLMVPS
Trigger: GGAGGGCACCATGAGTTGGCAGAACGCCTCATAGAA...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTCTTCTTCGCAGCTTTTaGCAACTCAGACAAATCCAG +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPLLRSF*QLRQIQ
Trigger: CTGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAG...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGCTTCTTCGCAGCTTTTaGCAACTCAGACAAATCCAG +
Preference number: 4 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTLLRSF*QLRQIQ
Trigger: CTGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAG...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATAAGGTACTGTGGTTCTaGGTGGCAAGCCAGACTGCG +
Preference number: 4 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHKVLWF*VASQTA
Trigger: CGCAGTCTGGCTTGCCACGCAGAACCACAGTACCTT...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCTGGACATGGGTCTACTaGCCCGGGCAGATGGCCGTC +
Preference number: 4 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFWTWVY*PGQMAV
Trigger: GACGGCCATCTGCCCGGGGCAGTAGACCCATGTCCA...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGAATGTTTTTGGTGATCTaGTCGGTCTTCCGGATGACG +
Preference number: 4 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGMFLVI*SVFRMT
Trigger: CGTCATCCGGAAGACCGAGCAGATCACCAAAAACAT...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATTAAGATGCCTCACTTaGGAGATATGGCGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGLRCLT*EIWRPR
Trigger: CCTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAA...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGACATCTGGAGCAGGGTTaGAGGCCATGCTGTGTGTTT +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGHLEQG*RPCCVF
Trigger: AAACACACAGCATGGCCTCCAACCCTGCTCCAGATG...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGAGTGAACTTTGTCCTGTaGGTTAGCTTTCCGCCTCCC +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGVNFVL*VSFPPP
Trigger: GGGAGGCGGAAAGCTAACCCACAGGACAAAGTTCAC...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTCAGGATGAAAGAAGTTaGCTTGGGCTCCTAAAGACA +
Preference number: 4 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPQDERS*LGLLKT
Trigger: TGTCTTTAGGAGCCCAAGCCAACTTCTTTCATCCTG...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGAGCTTTGGAGGCGACGTaGAGTGGAGTGCTTCCTTTT +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGALEAT*SGVLPF
Trigger: AAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGC...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATCGTTCTGCCAACTCATaGTGCCCTCCTTGCCTTGCA +
Preference number: 4 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHRSANS*CPPCLA
Trigger: TGCAAGGCAAGGAGGGCACCATGAGTTGGCAGAACG...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCCTCTCAGTGCTGTGCTaGGTACTGACTGTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCLSVLC*VLTVLN
Trigger: ATTGAGAACAGTCAGTACCCAGCACAGCACTGAGAG...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCTCTCAGTGCTGTGCTaGGTACTGACTGTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQLSVLC*VLTVLN
Trigger: ATTGAGAACAGTCAGTACCCAGCACAGCACTGAGAG...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCCACACTGTCATAGTCTaGCTGGTCGTTGTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCHTVIV*LVVVLA
Trigger: AGCCAAGACAACGACCAGCCAGACTATGACAGTGTG...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATCTTGCAGTGTCCTTGTaGTCAGAGCCAGTCTGCACC +
Preference number: 4 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHLAVSL*SEPVCT
Trigger: GGTGCAGACTGGCTCTGACCACAAGGACACTGCAAG...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGAGCTCGCAGGAGCTCCTaGATGTTTTTGGTGATCTGC +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGARRSS*MFLVIC
Trigger: GCAGATCACCAAAAACATCCAGGAGCTCCTGCGAGC...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATGCTGTTTGGCGGCCTTaGCGATGTCATAGGCACACT +
Preference number: 4 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHAVWRP*RCHRHT
Trigger: AGTGTGCCTATGACATCGCCAAGGCCGCCAAACAGC...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCATCTGCTTTATTGGGGTaGACTTTGTCCTGTGGGTTA +
Preference number: 4 (lower is better)
Translates to: GPAGHPPALRLVCIDEWASALLG*TLSCGL
Trigger: TAACCCACAGGACAAAGTTCACCCCAATAAAGCAGA...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGTCTGCTTTATTGGGGTaGACTTTGTCCTGTGGGTTA +
Preference number: 4 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQSALLG*TLSCGL
Trigger: TAACCCACAGGACAAAGTTCACCCCAATAAAGCAGA...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCCGTACTGTATTTCTATaGGGCGTTCTGCCAACTCAT +
Preference number: 4 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCRTVFL*GVLPTH
Trigger: ATGAGTTGGCAGAACGCCTCATAGAAATACAGTACG...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACCGTACTGTATTTCTATaGGGCGTTCTGCCAACTCAT +
Preference number: 4 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHRTVFL*GVLPTH
Trigger: ATGAGTTGGCAGAACGCCTCATAGAAATACAGTACG...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGACAGGGTTGGAGGCCATaGTGTGTGTTTAAGATGCCT +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGQGWRP*CVFKMP
Trigger: AGGCATCTTAAACACACAGCATGGCCTCCAACCCTG...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACCTTCTTCGCAGCTTTTaGCAACTCAGACAAATCCAG +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHLLRSF*QLRQIQ
Trigger: CTGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAG...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGATGTTTTTGGTGATCTaGTCGGTCTTCCGGATGACG +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSMFLVI*SVFRMT
Trigger: CGTCATCCGGAAGACCGAGCAGATCACCAAAAACAT...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACTTCACCTTCATTAGCTaGTGTCTCTTGGCCTCAGAA +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHFTFIS*CLLASE
Trigger: TTCTGAGGCCAAGAGACAGCAGCTAATGAAGGTGAA...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS-3UTR CCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACCAGGATGAAAGAAGTTaGCTTGGGCTCCTAAAGACA +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHQDERS*LGLLKT
Trigger: TGTCTTTAGGAGCCCAAGCCAACTTCTTTCATCCTG...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGCCTGCGTCGTACACATCCATaGCAAGTTCTTCAAACAAAT +
Preference number: 4 (lower is better)
Translates to: WEDILPEEPCGGCQQHGLRRTHP*QVLQTN
Trigger: ATTTGTTTGAAGAACTTGCCATGGATGTGTACGACG...CAGGCCGTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCAGCGTAGCAAACTCGTaGGCGTTAAACCGAGCTAAT +
Preference number: 4 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCSVANS*ALNRAN
Trigger: ATTAGCTCGGTTTAACGCCCACGAGTTTGCTACGCT...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCCTCTCAGTGCTGTGCTaGGTACTGACTGTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCLSVLC*VLTVLN
Trigger: ATTGAGAACAGTCAGTACCCAGCACAGCACTGAGAG...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAACTCTCAGTGCTGTGCTaGGTACTGACTGTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: ARAHGELFVQRHRSSNHELSVLC*VLTVLN
Trigger: ATTGAGAACAGTCAGTACCCAGCACAGCACTGAGAG...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTTCATGCTTGTTCTCCTaGGCTGCTCGCAGGAGCTCC +
Preference number: 4 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTSCLFS*AARRSS
Trigger: GGAGCTCCTGCGAGCAGCCCAGGAGAACAAGCATGA...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTCTGCTTTATTGGGGTaGACTTTGTCCTGTGGGTTA +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSSALLG*TLSCGL
Trigger: TAACCCACAGGACAAAGTTCACCCCAATAAAGCAGA...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGACGAACGCTAACATCTaGTACTTGGCTCTGATGAAT +
Preference number: 4 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQTNANI*YLALMN
Trigger: ATTCATCAGAGCCAAGTATCAGATGTTAGCGTTCGT...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCGAGCCAGTCTGCACCTaGCAGGCACTGGCTGTGGCC +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSEPVCT*QALAVA
Trigger: GGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTC...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGCTTCTTCGCAGCTTTTaGCAACTCAGACAAATCCAG +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSLLRSF*QLRQIQ
Trigger: CTGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAG...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCAGCACACTGGATGACCTaGTGTGTGACCAGCTGCACA +
Preference number: 4 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSAHWMT*CVTSCT
Trigger: TGTGCAGCTGGTCACACAGCAGGTCATCCAGTGTGC...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTTCACCTTCATTAGCTaGTGTCTCTTGGCCTCAGAA +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSFTFIS*CLLASE
Trigger: TTCTGAGGCCAAGAGACAGCAGCTAATGAAGGTGAA...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS-3UTR CCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGACTCTCAGTGCTGTGCTaGGTACTGACTGTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGLSVLC*VLTVLN
Trigger: ATTGAGAACAGTCAGTACCCAGCACAGCACTGAGAG...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCGCTGGCTTCTCCCATTaGGAGGTATGGCTTCTGGCC +
Preference number: 4 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFAGFSH*EVWLLA
Trigger: GGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGC...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCACCAGCTGCACATCTGTaGGTAAGCTGGAGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSPAAHL*VSWSLL
Trigger: CAGGAGACTCCAGCTTACCCACAGATGTGCAGCTGG...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCAGCTGTTTGGCGGCCTTaGCGATGTCATAGGCACACT +
Preference number: 4 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSAVWRP*RCHRHT
Trigger: AGTGTGCCTATGACATCGCCAAGGCCGCCAAACAGC...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTAGTTCCCCTATTTACTaGCGCCCAGGAAGGATCAGG +
Preference number: 4 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTSSPIY*RPGRIR
Trigger: CCTGATCCTTCCTGGGCGTCAGTAAATAGGGGAACT...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATAACGTGTATCCTCTCTaGGCAGGGAATATAGCTGTC +
Preference number: 4 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHNVYPL*AGNIAV
Trigger: GACAGCTATATTCCCTGCTCAGAGAGGATACACGTT...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCGGTAGGCACTGGACGTaGGTAGGCGGAGGGAAGTCC +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSGRHWT*VGGGKS
Trigger: GGACTTCCCTCCGCCTACTCACGTCCAGTGCCTACC...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGAACCTCCATAAATTCCTaGACAGTGACTGGTCCATCT +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGTSINS*TVTGPS
Trigger: AGATGGACCAGTCACTGTGCAGGAATTTATGGAGGT...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACTCACTTGGGAGATATaGCGCCCCAGGCTCCGATGG +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSLTWEI*RPRLRW
Trigger: CCATCGGAGCCTGGGGCGCCATATCTCCCAAGTGAG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTGTGAACTTTGTCCTGTaGGTTAGCTTTCCGCCTCCC +
Preference number: 4 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTVNFVL*VSFPPP
Trigger: GGGAGGCGGAAAGCTAACCCACAGGACAAAGTTCAC...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACGTTCTCACACTTGAATaGAGTTGCTTACTGAGATCT +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHVLTLE*SCLLRS
Trigger: AGATCTCAGTAAGCAACTCCATTCAAGTGTGAGAAC...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGGTTCTCACACTTGAATaGAGTTGCTTACTGAGATCT +
Preference number: 4 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQVLTLE*SCLLRS
Trigger: AGATCTCAGTAAGCAACTCCATTCAAGTGTGAGAAC...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGACAGGATGAAAGAAGTTaGCTTGGGCTCCTAAAGACA +
Preference number: 4 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGQDERS*LGLLKT
Trigger: TGTCTTTAGGAGCCCAAGCCAACTTCTTTCATCCTG...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGACGTCGTACACATCCATaGCAAGTTCTTCAAACAAAT +
Preference number: 4 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGRRTHP*QVLQTN
Trigger: ATTTGTTTGAAGAACTTGCCATGGATGTGTACGACG...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCGTCGTACACATCCATaGCAAGTTCTTCAAACAAAT +
Preference number: 4 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQRRTHP*QVLQTN
Trigger: ATTTGTTTGAAGAACTTGCCATGGATGTGTACGACG...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCCCAGCTGCACATCTGTaGGTAAGCTGGAGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFPAAHL*VSWSLL
Trigger: CAGGAGACTCCAGCTTACCCACAGATGTGCAGCTGG...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACTCACTCTGGAGAGTTTaGAGCTTTTTCTGCATAATT +
Preference number: 4 (lower is better)
Translates to: TPKRCALSRKWEALLLVHSLWRV*SFFCII
Trigger: AATTATGCAGAAAAAGCTTCAAACTCTCCAGAGTGA...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS-3UTR TCA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATCACTCTGGAGAGTTTaGAGCTTTTTCTGCATAATT +
Preference number: 4 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGSLWRV*SFFCII
Trigger: AATTATGCAGAAAAAGCTTCAAACTCTCCAGAGTGA...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS-3UTR GCA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCTTCTATGAGGCGTTCTaGCAACTCATGGTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFFYEAF*QLMVPS
Trigger: GGAGGGCACCATGAGTTGGCAGAACGCCTCATAGAA...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCGTGGCAAGCCAGACTaGGTCAGTCTCTCGCCTGTC +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSRGKPD*VSLSPV
Trigger: GACAGGCGAGAGACTGACGCAGTCTGGCTTGCCACG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACTTGTTCTCCTGGGCTaGTCGCAGGAGCTCCTGGAT +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSLVLLG*SQELLD
Trigger: ATCCAGGAGCTCCTGCGAGCAGCCCAGGAGAACAAG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCTGGGAGAGCCTTTCTaGACTCCGACTGGAGCCGGT +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSLGEPF*TPTGAG
Trigger: ACCGGCTCCAGTCGGAGTGCAGAAAGGCTCTCCCAG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCTGCTGTGTGACCAGCTaGACATCTGTGGGTAAGCTG +
Preference number: 4 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFCCVTS*TSVGKL
Trigger: CAGCTTACCCACAGATGTGCAGCTGGTCACACAGCA...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCTTAAGATGCCTCACTTaGGAGATATGGCGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFLRCLT*EIWRPR
Trigger: CCTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAA...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGCGTCGTACACATCCATaGCAAGTTCTTCAAACAAAT +
Preference number: 4 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSRRTHP*QVLQTN
Trigger: ATTTGTTTGAAGAACTTGCCATGGATGTGTACGACG...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCGCTCGCAGGAGCTCCTaGATGTTTTTGGTGATCTGC +
Preference number: 4 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFARRSS*MFLVIC
Trigger: GCAGATCACCAAAAACATCCAGGAGCTCCTGCGAGC...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCATCATGCTTGTTCTCCTaGGCTGCTCGCAGGAGCTCC +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSSCLFS*AARRSS
Trigger: GGAGCTCCTGCGAGCAGCCCAGGAGAACAAGCATGA...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAAGGAGTACTCAGGGTTaGCCGGAAGGAAAGGGACGA +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSRSTQG*PEGKGR
Trigger: TCGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCT...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTAACGTGTATCCTCTCTaGGCAGGGAATATAGCTGTC +
Preference number: 4 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTNVYPL*AGNIAV
Trigger: GACAGCTATATTCCCTGCTCAGAGAGGATACACGTT...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTATGTTTTTGGTGATCTaGTCGGTCTTCCGGATGACG +
Preference number: 4 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTMFLVI*SVFRMT
Trigger: CGTCATCCGGAAGACCGAGCAGATCACCAAAAACAT...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAGCACACTGGATGACCTaGTGTGTGACCAGCTGCACA +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSAHWMT*CVTSCT
Trigger: TGTGCAGCTGGTCACACAGCAGGTCATCCAGTGTGC...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAGGAGGCGACGTGGAGTaGAGTGCTTCCTTTTTCAGG +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSGGDVE*SASFFR
Trigger: CCTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCC...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACGTTCTGCCAACTCATaGTGCCCTCCTTGCCTTGCA +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSRSANS*CPPCLA
Trigger: TGCAAGGCAAGGAGGGCACCATGAGTTGGCAGAACG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCAAGCGTAGCAAACTCGTaGGCGTTAAACCGAGCTAAT +
Preference number: 4 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSSVANS*ALNRAN
Trigger: ATTAGCTCGGTTTAACGCCCACGAGTTTGCTACGCT...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACATCTGTGGGTAAGCTaGAGTCTCCTGGGAGAGCCT +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSHLWVS*SLLGEP
Trigger: AGGCTCTCCCAGGAGACTCCAGCTTACCCACAGATG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACCAGCTGCACATCTGTaGGTAAGCTGGAGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSPAAHL*VSWSLL
Trigger: CAGGAGACTCCAGCTTACCCACAGATGTGCAGCTGG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACCTGGATGTTTTTGGTaGTCTGCTCGGTCTTCCGGA +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSPGCFW*SARSSG
Trigger: TCCGGAAGACCGAGCAGATCACCAAAAACATCCAGG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCAAGGTACTGTGGTTCTaGGTGGCAAGCCAGACTGCG +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSKVLWF*VASQTA
Trigger: CGCAGTCTGGCTTGCCACGCAGAACCACAGTACCTT...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCACCTGGACAGAGGACTaGCCTGTTGTCTCCTCTTGG +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSTWTED*PVVSSW
Trigger: CCAAGAGGAGACAACAGGGCAGTCCTCTGTCCAGGT...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCATGCTGTGTGACCAGCTaGACATCTGTGGGTAAGCTG +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSCCVTS*TSVGKL
Trigger: CAGCTTACCCACAGATGTGCAGCTGGTCACACAGCA...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCGCACACTGGATGACCTaGTGTGTGACCAGCTGCACA +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSAHWMT*CVTSCT
Trigger: TGTGCAGCTGGTCACACAGCAGGTCATCCAGTGTGC...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCATTAAGATGCCTCACTTaGGAGATATGGCGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSLRCLT*EIWRPR
Trigger: CCTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAA...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATGTTCTCACACTTGAATaGAGTTGCTTACTGAGATCT +
Preference number: 4 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHVLTLE*SCLLRS
Trigger: AGATCTCAGTAAGCAACTCCATTCAAGTGTGAGAAC...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAGCTTTGGAGGCGACGTaGAGTGGAGTGCTTCCTTTT +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSALEAT*SGVLPF
Trigger: AAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGC...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCTACTGTGGTTCTGCGTaGCAAGCCAGACTGCGTCAG +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSYCGSA*QARLRQ
Trigger: CTGACGCAGTCTGGCTTGCCACGCAGAACCACAGTA...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAGTTACCAAGGTACTGTaGTTCTGCGTGGCAAGCCAG +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSVTKVL*FCVASQ
Trigger: CTGGCTTGCCACGCAGAACCACAGTACCTTGGTAAC...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCATCTGTGGGTAAGCTaGAGTCTCCTGGGAGAGCCT +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSHLWVS*SLLGEP
Trigger: AGGCTCTCCCAGGAGACTCCAGCTTACCCACAGATG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCCAGCTGCACATCTGTaGGTAAGCTGGAGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSPAAHL*VSWSLL
Trigger: CAGGAGACTCCAGCTTACCCACAGATGTGCAGCTGG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCGCTGTTTGGCGGCCTTaGCGATGTCATAGGCACACT +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSAVWRP*RCHRHT
Trigger: AGTGTGCCTATGACATCGCCAAGGCCGCCAAACAGC...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCATTAGCTGCTGTCTCTTaGCCTCAGAAGCCACTAGGG +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSLAAVS*PQKPLG
Trigger: CCCTAGTGGCTTCTGAGGCCAAGAGACAGCAGCTAA...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
ENSMUST00000155908.8
3UTR CAA 72 bp ACCAGGTATGCAATGCTCTTTTCTCTATGCTGCACTTaGCTTTGTAAGAGCGTGGGTGATAGCCAGCTAGGA +
Preference number: 4 (lower is better)
Translates to: TRYAMLFSLCCT*LCKSVGDSQLG
Trigger: TCCTAGCTGGCTATCACCCACGCTCTTACAAAGCAAAGTGCAGCATAGAGAAAAGAGCATTGCATACCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCAGTTCCCCTATTTACTaGCGCCCAGGAAGGATCAGG +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSSSPIY*RPGRIR
Trigger: CCTGATCCTTCCTGGGCGTCAGTAAATAGGGGAACT...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCTCCACATTGTCTTTTaGCCTGGACAGAGGACTGCC +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSLHIVF*PGQRTA
Trigger: GGCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCCTGGATGTTTTTGGTaGTCTGCTCGGTCTTCCGGA +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSPGCFW*SARSSG
Trigger: TCCGGAAGACCGAGCAGATCACCAAAAACATCCAGG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCTTCTATGAGGCGTTCTaGCAACTCATGGTGCCCTCC +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSFYEAF*QLMVPS
Trigger: GGAGGGCACCATGAGTTGGCAGAACGCCTCATAGAA...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCTGCTGTGTGACCAGCTaGACATCTGTGGGTAAGCTG +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSCCVTS*TSVGKL
Trigger: CAGCTTACCCACAGATGTGCAGCTGGTCACACAGCA...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCTTAAGATGCCTCACTTaGGAGATATGGCGCCCCAGG +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSLRCLT*EIWRPR
Trigger: CCTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAA...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCATCTGGAGCAGGGTTaGAGGCCATGCTGTGTGTTT +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSHLEQG*RPCCVF
Trigger: AAACACACAGCATGGCCTCCAACCCTGCTCCAGATG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCGTGAACTTTGTCCTGTaGGTTAGCTTTCCGCCTCCC +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSVNFVL*VSFPPP
Trigger: GGGAGGCGGAAAGCTAACCCACAGGACAAAGTTCAC...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACACACTGTCATAGTCTaGCTGGTCGTTGTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSHTVIV*LVVVLA
Trigger: AGCCAAGACAACGACCAGCCAGACTATGACAGTGTG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AAATGTCAAGAAATAACTCAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCTCTCGTACATGGACATaGGTCTACTGCCCCGGGCAG +
Preference number: 4 (lower is better)
Translates to: KCQEITQTSGSLKNQSTGSRTWT*VYCPGQ
Trigger: CTGCCCGGGGCAGTAGACCCATGTCCATGTACGAGA...GCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTGAGTTATTTCTTGACATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCGCTCGCAGGAGCTCCTaGATGTTTTTGGTGATCTGC +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSARRSS*MFLVIC
Trigger: GCAGATCACCAAAAACATCCAGGAGCTCCTGCGAGC...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACCCTGTTCTCACACTTaGATGGAGTTGCTTACTGAG +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSPCSHT*MELLTE
Trigger: CTCAGTAAGCAACTCCATTCAAGTGTGAGAACAGGG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCAGGGTTGGAGGCCATaGTGTGTGTTTAAGATGCCT +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSQGWRP*CVFKMP
Trigger: AGGCATCTTAAACACACAGCATGGCCTCCAACCCTG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCGAGGCCTTCATTAGCTaGTGTCTCTTGGCCTCAGAA +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSEAFIS*CLLASE
Trigger: TTCTGAGGCCAAGAGACAGCAGCTAATGAAGGCCTC...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000155908.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAAGCGTAGCAAACTCGTaGGCGTTAAACCGAGCTAAT +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSSVANS*ALNRAN
Trigger: ATTAGCTCGGTTTAACGCCCACGAGTTTGCTACGCT...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AAATGTCAAGAAATAACTCAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCCCAGCTGCACATCTGTaGGTAAGCTGGAGTCTCCTG +
Preference number: 4 (lower is better)
Translates to: KCQEITQTSGSLKNQSTGPAAHL*VSWSLL
Trigger: CAGGAGACTCCAGCTTACCCACAGATGTGCAGCTGG...GCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTGAGTTATTTCTTGACATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCATCTGCTTTATTGGGGTaGACTTTGTCCTGTGGGTTA +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSSALLG*TLSCGL
Trigger: TAACCCACAGGACAAAGTTCACCCCAATAAAGCAGA...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACGTACTGTATTTCTATaGGGCGTTCTGCCAACTCAT +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSRTVFL*GVLPTH
Trigger: ATGAGTTGGCAGAACGCCTCATAGAAATACAGTACG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCAACGTGTATCCTCTCTaGGCAGGGAATATAGCTGTC +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSNVYPL*AGNIAV
Trigger: GACAGCTATATTCCCTGCTCAGAGAGGATACACGTT...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCATGTTTTTGGTGATCTaGTCGGTCTTCCGGATGACG +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSMFLVI*SVFRMT
Trigger: CGTCATCCGGAAGACCGAGCAGATCACCAAAAACAT...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAACCTCCATAAATTCCTaGACAGTGACTGGTCCATCT +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSTSINS*TVTGPS
Trigger: AGATGGACCAGTCACTGTGCAGGAATTTATGGAGGT...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
ENSMUST00000155908.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACAGGATGAAAGAAGTTaGCTTGGGCTCCTAAAGACA +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSQDERS*LGLLKT
Trigger: TGTCTTTAGGAGCCCAAGCCAACTTCTTTCATCCTG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCTCTCAGTGCTGTGCTaGGTACTGACTGTTCTCAAT +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSLSVLC*VLTVLN
Trigger: ATTGAGAACAGTCAGTACCCAGCACAGCACTGAGAG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AAATGTCAAGAAATAACTCAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCATCCAGTCTCGTACATaGACATGGGTCTACTGCCCC +
Preference number: 4 (lower is better)
Translates to: KCQEITQTSGSLKNQSTGIQSRT*TWVYCP
Trigger: GGGGCAGTAGACCCATGTCCATGTACGAGACTGGAT...GCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTGAGTTATTTCTTGACATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCTCTGCTTTATTGGGGTaGACTTTGTCCTGTGGGTTA +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSSALLG*TLSCGL
Trigger: TAACCCACAGGACAAAGTTCACCCCAATAAAGCAGA...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR TCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAACGAACGCTAACATCTaGTACTTGGCTCTGATGAAT +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSTNANI*YLALMN
Trigger: ATTCATCAGAGCCAAGTATCAGATGTTAGCGTTCGT...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR GCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCTTCTTCGCAGCTTTTaGCAACTCAGACAAATCCAG +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSLLRSF*QLRQIQ
Trigger: CTGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AAATGTCAAGAAATAACTCAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCCACACTGTCATAGTCTaGCTGGTCGTTGTCTTGGCT +
Preference number: 4 (lower is better)
Translates to: KCQEITQTSGSLKNQSTGHTVIV*LVVVLA
Trigger: AGCCAAGACAACGACCAGCCAGACTATGACAGTGTG...GCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTGAGTTATTTCTTGACATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAGTTCTCACACTTGAATaGAGTTGCTTACTGAGATCT +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSVLTLE*SCLLRS
Trigger: AGATCTCAGTAAGCAACTCCATTCAAGTGTGAGAAC...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACGTCGTACACATCCATaGCAAGTTCTTCAAACAAAT +
Preference number: 4 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSRRTHP*QVLQTN
Trigger: ATTTGTTTGAAGAACTTGCCATGGATGTGTACGACG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp AAATGTCAAGAAATAACTCAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCGTAGCAAACTCGTaGGCGTTAAACCGAGCTAAT +
Preference number: 4 (lower is better)
Translates to: KCQEITQTSGSLKNQSTGSVANS*ALNRAN
Trigger: ATTAGCTCGGTTTAACGCCCACGAGTTTGCTACGCT...GCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTGAGTTATTTCTTGACATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CCA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCGTTCTCACACTTGAATaGAGTTGCTTACTGAGATCT +
Preference number: 4 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSVLTLE*SCLLRS
Trigger: AGATCTCAGTAAGCAACTCCATTCAAGTGTGAGAAC...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CCA 90 bp CACTCTCCGGGGTGCTGTTCTGCTTCTCCAGTCTGGAGGCATGCGTaGGGAAGGGTTGAAGTCTCGTCCGGCTCTCCTCAGGGTGGCTGG +
Preference number: 5 (lower is better)
Translates to: HSPGCCSASPVWRHA*GRVEVSSGSPQGGW
Trigger: CCAGCCACCCTGAGGAGAGCCGGACGAGACTTCAACCCTTCCCCACGCATGCCTCCAGACTGGAGAAGCAGAACAGCACCCCGGAGAGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS TCA 90 bp GCCATCACCTTGCCAGAGCATGCTCCGCTGCCGTCCCTTCCGGGTTaGCCCCGTGTCGTCTGGCTCAGGGTCACAGGCAGTGTTGTCATA +
Preference number: 5 (lower is better)
Translates to: AITLPEHAPLPSLPG*PRVVWLRVTGSVVI
Trigger: TATGACAACACTGCCTGTGACCCTGAGCCAGACGACACGGGGTCAACCCGGAAGGGACGGCAGCGGAGCATGCTCTGGCAAGGTGATGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS GCA 90 bp GGGACCGAGTGGGGTTCTGCTGTATCTGGCAATAAGCCATCACCTTaGCAGAGCATGCTCCGCTGCCGTCCCTTCCGGGTTGACCCCGTG +
Preference number: 5 (lower is better)
Translates to: GTEWGSAVSGNKPSP*QSMLRCRPFRVDPV
Trigger: CACGGGGTCAACCCGGAAGGGACGGCAGCGGAGCATGCTCTGGCAAGGTGATGGCTTATTGCCAGATACAGCAGAACCCCACTCGGTCCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGGGCTGGCTTCTCCCATaGGGAGGTATGGCTTCTGGC +
Preference number: 5 (lower is better)
Translates to: GTSSREPARKSSHPWSTQGWLLP*GGMASG
Trigger: GCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCC...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS GCA 90 bp GGGGTTCTGCTGTATCTGGCAATAAGCCATCACCTTGCCAGAGCATaGTCCGCTGCCGTCCCTTCCGGGTTGACCCCGTGTCGTCTGGCT +
Preference number: 5 (lower is better)
Translates to: GVLLYLAISHHLARA*SAAVPSGLTPCRLA
Trigger: AGCCAGACGACACGGGGTCAACCCGGAAGGGACGGCAGCGGAGCATGCTCTGGCAAGGTGATGGCTTATTGCCAGATACAGCAGAACCCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CCA 90 bp GCGTGGGGAAGGGTTGAAGTCTCGTCCGGCTCTCCTCAGGGTGGCTaGCTTCTCCCATTGGGAGGTATGGCTTCTGGCCTGATCCAGTCT +
Preference number: 5 (lower is better)
Translates to: AWGRVEVSSGSPQGG*LLPLGGMASGLIQS
Trigger: AGACTGGATCAGGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCGGACGAGACTTCAACCCTTCCCCACGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS CCA 90 bp CTCCCATTGGGAGGTATGGCTTCTGGCCTGATCCAGTCTCGTACATaGACATGGGTCTACTGCCCCGGGCAGATGGCCGTCGCTTTAGGG +
Preference number: 5 (lower is better)
Translates to: LPLGGMASGLIQSRT*TWVYCPGQMAVALG
Trigger: CCCTAAAGCGACGGCCATCTGCCCGGGGCAGTAGACCCATGTCCATGTACGAGACTGGATCAGGCCAGAAGCCATACCTCCCAATGGGAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS CCA 90 bp GCAGAGACGAAGAGGAGGTCACAAGTGCACTCCTCCCAATATGCGTaGGGAAGGGTTGAAGTCTCGTCCGGCTCTCCTCAGGGTGGCTGG +
Preference number: 5 (lower is better)
Translates to: AETKRRSQVHSSQYA*GRVEVSSGSPQGGW
Trigger: CCAGCCACCCTGAGGAGAGCCGGACGAGACTTCAACCCTTCCCCACGCATATTGGGAGGAGTGCACTTGTGACCTCCTCTTCGTCTCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000112185.9
ENSMUST00000130925.2
CDS-3UTR CAA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGCTCACTCTGGAGAGTTaGAAGCTTCTGCCGGTTTGC +
Preference number: 5 (lower is better)
Translates to: DRQSAFSTASASAAVAWVLTLES*KLLPVC
Trigger: GCAAACCGGCAGAAGCTTCAAACTCTCCAGAGTGAG...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CAGGATGCTGAGAAGCCACCAGAGGAGGAGGAGCGAGGGGGCTTAACACCAGGTTGGCTTGCAGTGTCCTaGTGGTCAGAGCCAGTCTGC +
Preference number: 5 (lower is better)
Translates to: QDAEKPPEEEERGGLTPGWLAVS*WSEPVC
Trigger: GCAGACTGGCTCTGACCACAAGGACACTGCAAGCCA...ACCTGGTGTTAAGCCCCCTCGCTCCTCCTCCTCTGGTGGCTTCTCAGCATCCTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS TCA 90 bp GACGAGTGGCTTGCAGTGTCCTTGTGGTCAGAGCCAGTCTGCACCTaGCAGGCACTGGCTGTGGCCTGTCTCCTGAGGCTTGAGTTCTCA +
Preference number: 5 (lower is better)
Translates to: DEWLAVSLWSEPVCT*QALAVACLLRLEFS
Trigger: TGAGAACTCAAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTCTGACCACAAGGACACTGCAAGCCACTCGTC
59% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS TCA 90 bp GGAGAGCCTTTCTGCACTCCGACTGGAGCCGGTAGGCACTGGACGTaGGTAGGCGGAGGGAAGTCCTCACCGTGTCAGACTTGGGTTTTT +
Preference number: 5 (lower is better)
Translates to: GEPFCTPTGAGRHWT*VGGGKSSPCQTWVF
Trigger: AAAAACCCAAGTCTGACACGGTGAGGACTTCCCTCCGCCTACTCACGTCCAGTGCCTACCGGCTCCAGTCGGAGTGCAGAAAGGCTCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS GCA 90 bp CTGGCTCAGGGTCACAGGCAGTGTTGTCATAATCACTCTCCGGGGTaGTGTTCTGCTTCTCCAGTCTGGAGGCCCTTCGGGCGCTTTCGT +
Preference number: 5 (lower is better)
Translates to: LAQGHRQCCHNHSPG*CSASPVWRPFGRFR
Trigger: ACGAAAGCGCCCGAAGGGCCTCCAGACTGGAGAAGCAGAACAGCACCCCGGAGAGTGATTATGACAACACTGCCTGTGACCCTGAGCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000112185.9
ENSMUST00000130925.2
CDS CCA 90 bp ACCGGAAGGAAAGGGACGACGGTCGTCTCGGTTACCAAGGTACTGTaGTTCTGCGTGGCAAGCCAGACTGCGTCAGTCTCTCGCCTGTCA +
Preference number: 5 (lower is better)
Translates to: TGRKGTTVVSVTKVL*FCVASQTASVSRLS
Trigger: TGACAGGCGAGAGACTGACGCAGTCTGGCTTGCCACGCAGAACCACAGTACCTTGGTAACCGAGACGACCGTCGTCCCTTTCCTTCCGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CCA 90 bp TTGGGAGGTATGGCTTCTGGCCTGATCCAGTCTCGTACATGGACATaGGTCTACTGCCCCGGGCAGATGGCCGTCGCTTTAGGGACGAGT +
Preference number: 5 (lower is better)
Translates to: LGGMASGLIQSRTWT*VYCPGQMAVALGTS
Trigger: ACTCGTCCCTAAAGCGACGGCCATCTGCCCGGGGCAGTAGACCCATGTCCATGTACGAGACTGGATCAGGCCAGAAGCCATACCTCCCAA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGTTTAAGATGCCTCACTaGGGAGATATGGCGCCCCAG +
Preference number: 5 (lower is better)
Translates to: GTSSREPARKSSHPWSTQFKMPH*GDMAPQ
Trigger: CTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAAA...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGACCATCTGGAGCAGGGTaGGAGGCCATGCTGTGTGTT +
Preference number: 5 (lower is better)
Translates to: GRCSCSECGRLEADVKGGPSGAG*EAMLCV
Trigger: AACACACAGCATGGCCTCCAACCCTGCTCCAGATGG...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGATGGCTGGTCGTTGTCTaGGCTCTCAGTGCTGTGCTG +
Preference number: 5 (lower is better)
Translates to: GRCSCSECGRLEADVKGGWLVVV*ALSAVL
Trigger: CAGCACAGCACTGAGAGCCAAGACAACGACCAGCCA...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGAGAAGCTTCTGCCGGTTaGCCTTGCTTGCCCTCGTCT +
Preference number: 5 (lower is better)
Translates to: GRCSCSECGRLEADVKGGEASAG*PCLPSS
Trigger: AGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTC...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTTGGCTTGCAGTGTCCTaGTGGTCAGAGCCAGTCTGC +
Preference number: 5 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGWLAVS*WSEPVC
Trigger: GCAGACTGGCTCTGACCACAAGGACACTGCAAGCCA...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACGGCTGGCTTCTCCCATaGGGAGGTATGGCTTCTGGC +
Preference number: 5 (lower is better)
Translates to: TPKRCALSRKWEALLLVHGWLLP*GGMASG
Trigger: GCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCC...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACGGCTGGCTTCTCCCATaGGGAGGTATGGCTTCTGGC +
Preference number: 5 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHGWLLP*GGMASG
Trigger: GCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCC...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTCCCTCAGGTCAGGGCCAGAGCTCCACCCAGGCAGAAGCGATCGACAAAGTGCTCAGACTTGGGTTTTTaGGGGAACAGGGCTGCCATC +
Preference number: 5 (lower is better)
Translates to: LPQVRARAPPRQKRSTKCSDLGF*GNRAAI
Trigger: GATGGCAGCCCTGTTCCCCAAAAAACCCAAGTCTGA...GCACTTTGTCGATCGCTTCTGCCTGGGTGGAGCTCTGGCCCTGACCTGAGGGAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGCAGCTGCTGTTCTCTTaGGTGGTGATTGTGACCAGC +
Preference number: 5 (lower is better)
Translates to: GTSSREPARKSSHPWSTQQLLFS*VVIVTS
Trigger: GCTGGTCACAATCACCACCAAAGAGAACAGCAGCTG...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGAACCAGCTCCAGGGAGCCTGCCAGGAAGAGCAGTCATCCTTGGAGCACGCAGGCCACTAGGGCGCTTTaGACCTCCATAAATTCCTGC +
Preference number: 5 (lower is better)
Translates to: GTSSREPARKSSHPWSTQATRAL*TSINSC
Trigger: GCAGGAATTTATGGAGGTCAAAAGCGCCCTAGTGGC...CTGCGTGCTCCAAGGATGACTGCTCTTCCTGGCAGGCTCCCTGGAGCTGGTTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000146044.8
CDS TCA 90 bp CAGAGCCAGTCTGCACCTGACAGGCACTGGCTGTGGCCTGTCTCCTaGGGCTTGAGTTCTCACTCTGGAGAGTTTGAAGCTTCTGCCGGT +
Preference number: 5 (lower is better)
Translates to: QSQSAPDRHWLWPVS*GLSSHSGEFEASAG
Trigger: ACCGGCAGAAGCTTCAAACTCTCCAGAGTGAGAACTCAAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS GCA 90 bp CTGGCTCAGGGTCACAGGCAGTGTTGTCATAATCACTCTCCGGGGTaGTGTTCTGCTTCTCCAGTCTGGAGGCATGCGTGGGGAAGGGTT +
Preference number: 5 (lower is better)
Translates to: LAQGHRQCCHNHSPG*CSASPVWRHAWGRV
Trigger: AACCCTTCCCCACGCATGCCTCCAGACTGGAGAAGCAGAACAGCACCCCGGAGAGTGATTATGACAACACTGCCTGTGACCCTGAGCCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACCCATCTGGAGCAGGGTaGGAGGCCATGCTGTGTGTT +
Preference number: 5 (lower is better)
Translates to: TPKRCALSRKWEALLLVHPSGAG*EAMLCV
Trigger: AACACACAGCATGGCCTCCAACCCTGCTCCAGATGG...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACCCATCTGGAGCAGGGTaGGAGGCCATGCTGTGTGTT +
Preference number: 5 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHPSGAG*EAMLCV
Trigger: AACACACAGCATGGCCTCCAACCCTGCTCCAGATGG...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp AATCATGAACTACCCGTGAGGGGATGGGGACACGGAGGCCCTGCGTCTTACCTGCTTCCCACTAGAATCTaGTGTGCCTGGGTCAGCTCC +
Preference number: 5 (lower is better)
Translates to: NHELPVRGWGHGGPASYLLPTRI*CAWVSS
Trigger: GGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAG...CAGGTAAGACGCAGGGCCTCCGTGTCCCCATCCCCTCACGGGTAGTTCATGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTCTCATGGTGCCCTCCTaGCCTTGCATAGTCAACAGG +
Preference number: 5 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGLMVPS*PCIVNR
Trigger: CCTGTTGACTATGCAAGGCAAGGAGGGCACCATGAG...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTGCGTCTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGGAGGAGTACTCAGGGTaGACCGGAAGGAAAGGGACG +
Preference number: 5 (lower is better)
Translates to: LRLTWEDILPEEPCGGCQEEYSG*TGRKGT
Trigger: CGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCTC...CTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAGACGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACGAGGAGTACTCAGGGTaGACCGGAAGGAAAGGGACG +
Preference number: 5 (lower is better)
Translates to: TPKRCALSRKWEALLLVHEEYSG*TGRKGT
Trigger: CGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCTC...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTCAGAGGACTGCCCTGTaGTCTCCTCTTGGCATCACT +
Preference number: 5 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPQRTAL*SPLGIT
Trigger: AGTGATGCCAAGAGGAGACAACAGGGCAGTCCTCTG...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp TCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGCTGGTCGTTGTCTaGGCTCTCAGTGCTGTGCTG +
Preference number: 5 (lower is better)
Translates to: SLGSGKLCSSCTWRDPTGWLVVV*ALSAVL
Trigger: CAGCACAGCACTGAGAGCCAAGACAACGACCAGCCA...TCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACTGGCTGGTCGTTGTCTaGGCTCTCAGTGCTGTGCTG +
Preference number: 5 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHWLVVV*ALSAVL
Trigger: CAGCACAGCACTGAGAGCCAAGACAACGACCAGCCA...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACTGGCTTGCAGTGTCCTaGTGGTCAGAGCCAGTCTGC +
Preference number: 5 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHWLAVS*WSEPVC
Trigger: GCAGACTGGCTCTGACCACAAGGACACTGCAAGCCA...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS CCA 90 bp CGTCTCCACGTCTGTGTCTTCATCGGAGGCCACACTGTCATAGTCTaGCTGGTCGTTGTCTTGGCTCTCAGTGCTGTGCTGGGTACTGAC +
Preference number: 5 (lower is better)
Translates to: RLHVCVFIGGHTVIV*LVVVLALSAVLGTD
Trigger: GTCAGTACCCAGCACAGCACTGAGAGCCAAGACAACGACCAGCCAGACTATGACAGTGTGGCCTCCGATGAAGACACAGACGTGGAGACG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CCA 90 bp TGTTGTCATAATCACTCTCCGGGGTGCTGTTCTGCTTCTCCAGTCTaGAGGCATGCGTGGGGAAGGGTTGAAGTCTCGTCCGGCTCTCCT +
Preference number: 5 (lower is better)
Translates to: CCHNHSPGCCSASPV*RHAWGRVEVSSGSP
Trigger: AGGAGAGCCGGACGAGACTTCAACCCTTCCCCACGCATGCCTCCAGACTGGAGAAGCAGAACAGCACCCCGGAGAGTGATTATGACAACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAACCATCTGGAGCAGGGTaGGAGGCCATGCTGTGTGTT +
Preference number: 5 (lower is better)
Translates to: ARAHGELFVQRHRSSNHEPSGAG*EAMLCV
Trigger: AACACACAGCATGGCCTCCAACCCTGCTCCAGATGG...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGGAGTTAGCACCATTGTaGTACAAGGTCTCAACCATC +
Preference number: 5 (lower is better)
Translates to: DRQSAFSTASASAAVAWVELAPL*YKVSTI
Trigger: GATGGTTGAGACCTTGTACAACAATGGTGCTAACTC...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACCTTCCCACTAGAATCTaGTGTGCCTGGGTCAGCTCC +
Preference number: 5 (lower is better)
Translates to: TPKRCALSRKWEALLLVHLPTRI*CAWVSS
Trigger: GGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAG...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCCTTCCCACTAGAATCTaGTGTGCCTGGGTCAGCTCC +
Preference number: 5 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCLPTRI*CAWVSS
Trigger: GGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAG...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGCACCTCATGGTGCCCTCCTaGCCTTGCATAGTCAACAGG +
Preference number: 5 (lower is better)
Translates to: TPKRCALSRKWEALLLVHLMVPS*PCIVNR
Trigger: CCTGTTGACTATGCAAGGCAAGGAGGGCACCATGAG...GTGCACGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCGAGGAGTACTCAGGGTaGACCGGAAGGAAAGGGACG +
Preference number: 5 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCEEYSG*TGRKGT
Trigger: CGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCTC...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCCAGAGGACTGCCCTGTaGTCTCCTCTTGGCATCACT +
Preference number: 5 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCQRTAL*SPLGIT
Trigger: AGTGATGCCAAGAGGAGACAACAGGGCAGTCCTCTG...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTGCTCCACATTGTCTTTaGACCTGGACAGAGGACTGC +
Preference number: 5 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPAPHCL*TWTEDC
Trigger: GCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAGC...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTGCTCCACATTGTCTTTaGACCTGGACAGAGGACTGC +
Preference number: 5 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGAPHCL*TWTEDC
Trigger: GCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAGC...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAAGAAGCTTCTGCCGGTTaGCCTTGCTTGCCCTCGTCT +
Preference number: 5 (lower is better)
Translates to: ARAHGELFVQRHRSSNHEEASAG*PCLPSS
Trigger: AGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTC...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTGGCTTGCAGTGTCCTaGTGGTCAGAGCCAGTCTGC +
Preference number: 5 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSWLAVS*WSEPVC
Trigger: GCAGACTGGCTCTGACCACAAGGACACTGCAAGCCA...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGTCAGACTTGGGTTTTTaGGGGAACAGGGCTGCCATC +
Preference number: 5 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTSDLGF*GNRAAI
Trigger: GATGGCAGCCCTGTTCCCCAAAAAACCCAAGTCTGA...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGATCAGACTTGGGTTTTTaGGGGAACAGGGCTGCCATC +
Preference number: 5 (lower is better)
Translates to: GRCSCSECGRLEADVKGGSDLGF*GNRAAI
Trigger: GATGGCAGCCCTGTTCCCCAAAAAACCCAAGTCTGA...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS TCA 90 bp AGTCTGCACCTGACAGGCACTGGCTGTGGCCTGTCTCCTGAGGCTTaGGTTCTCACTCTGGAGAGTTTGAAGCTTCTGCCGGTTTGCCTT +
Preference number: 5 (lower is better)
Translates to: SLHLTGTGCGLSPEA*VLTLESLKLLPVCL
Trigger: AAGGCAAACCGGCAGAAGCTTCAAACTCTCCAGAGTGAGAACTCAAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTGCAGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS GCA 90 bp GTTCTCACTCTGGAGAGTTTGAAGCTTCTGCCGGTTTGCCTTGCTTaGCCTCGTCTCCACGTCTGTGTCTTCATCGGAGGCCACACTGTC +
Preference number: 5 (lower is better)
Translates to: VLTLESLKLLPVCLA*PRLHVCVFIGGHTV
Trigger: GACAGTGTGGCCTCCGATGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTCAAACTCTCCAGAGTGAGAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS GCA 90 bp CTGGCTCAGGGTCACAGGCAGTGTTGTCATAATCACTCTCCGGGGTaGTGTTCTGCTTCTCCAGTCTGGAGGCCTTCATTAGCTGCTGTC +
Preference number: 5 (lower is better)
Translates to: LAQGHRQCCHNHSPG*CSASPVWRPSLAAV
Trigger: GACAGCAGCTAATGAAGGCCTCCAGACTGGAGAAGCAGAACAGCACCCCGGAGAGTGATTATGACAACACTGCCTGTGACCCTGAGCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155908.8
CDS-3UTR CAA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGATAGAGTTAGCACCATaGTTGTACAAGGTCTCAACC +
Preference number: 5 (lower is better)
Translates to: DRQSAFSTASASAAVAWVIELAP*LYKVST
Trigger: GGTTGAGACCTTGTACAACAATGGTGCTAACTCTAT...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGCTCATGGTGCCCTCCTaGCCTTGCATAGTCAACAGG +
Preference number: 5 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSLMVPS*PCIVNR
Trigger: CCTGTTGACTATGCAAGGCAAGGAGGGCACCATGAG...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGCAGAGGACTGCCCTGTaGTCTCCTCTTGGCATCACT +
Preference number: 5 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSQRTAL*SPLGIT
Trigger: AGTGATGCCAAGAGGAGACAACAGGGCAGTCCTCTG...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCCAGAGGACTGCCCTGTaGTCTCCTCTTGGCATCACT +
Preference number: 5 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCQRTAL*SPLGIT
Trigger: AGTGATGCCAAGAGGAGACAACAGGGCAGTCCTCTG...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGCTCCACATTGTCTTTaGACCTGGACAGAGGACTGC +
Preference number: 5 (lower is better)
Translates to: GPAGHPPALRLVCIDEWAAPHCL*TWTEDC
Trigger: GCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAGC...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGGCTGGTCGTTGTCTaGGCTCTCAGTGCTGTGCTG +
Preference number: 5 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGWLVVV*ALSAVL
Trigger: CAGCACAGCACTGAGAGCCAAGACAACGACCAGCCA...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGAGAAGCTTCTGCCGGTTaGCCTTGCTTGCCCTCGTCT +
Preference number: 5 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGEASAG*PCLPSS
Trigger: AGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTC...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTTACCTGGGAAGACATCCTTCCAGAGGAGCCGTGTGGAGGATGTCAGCAGCACCTCACTCTGGAGAGTTaGAAGCTTCTGCCGGTTTGC +
Preference number: 5 (lower is better)
Translates to: LTWEDILPEEPCGGCQQHLTLES*KLLPVC
Trigger: GCAAACCGGCAGAAGCTTCAAACTCTCCAGAGTGAG...GTGCTGCTGACATCCTCCACACGGCTCCTCTGGAAGGATGTCTTCCCAGGTAAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp AGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCGCCACTAGGGCGCTTTaGACCTCCATAAATTCCTGC +
Preference number: 5 (lower is better)
Translates to: SFLIDCTMLGRDGCCCCCATRAL*TSINSC
Trigger: GCAGGAATTTATGGAGGTCAAAAGCGCCCTAGTGGC...GCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS TCA 90 bp CAGAGCCAGTCTGCACCTGACAGGCACTGGCTGTGGCCTGTCTCCTaGGGCTTGAGTTCTCACTCTGGAGAGTTTGAAGCTTTTTCTGCA +
Preference number: 5 (lower is better)
Translates to: QSQSAPDRHWLWPVS*GLSSHSGEFEAFSA
Trigger: TGCAGAAAAAGCTTCAAACTCTCCAGAGTGAGAACTCAAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS TCA 90 bp ATGGACACTGCAACATTCGTCACATATGAAAGTTCCCCTATTTACTaGCGCCCAGGAAGGATCGTAGACCGGGCTCGGTGCCGGGGGCTT +
Preference number: 5 (lower is better)
Translates to: MDTATFVTYESSPIY*RPGRIVDRARCRGL
Trigger: AAGCCCCCGGCACCGAGCCCGGTCTACGATCCTTCCTGGGCGTCAGTAAATAGGGGAACTTTCATATGTGACGAATGTTGCAGTGTCCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000131016.2
CDS TCA 90 bp CAGAGCCAGTCTGCACCTGACAGGCACTGGCTGTGGCCTGTCTCCTaGGGCTTGAGTTCTCACTCTGGAGAGTTTGAAGCTTCATTAGCT +
Preference number: 5 (lower is better)
Translates to: QSQSAPDRHWLWPVS*GLSSHSGEFEASLA
Trigger: AGCTAATGAAGCTTCAAACTCTCCAGAGTGAGAACTCAAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000130925.2
CDS GCA 90 bp TTGAGTTCTCACTCTGGAGAGTTTGAAGCTTCTGCCGGTTTGCCTTaGTTGCCCTCGTCTCCACGTCTGTGTCTTCATCGGAGGCCACAC +
Preference number: 5 (lower is better)
Translates to: LSSHSGEFEASAGLP*LPSSPRLCLHRRPH
Trigger: GTGTGGCCTCCGATGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTCAAACTCTCCAGAGTGAGAACTCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGTTTAAGATGCCTCACTaGGGAGATATGGCGCCCCAG +
Preference number: 5 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSFKMPH*GDMAPQ
Trigger: CTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAAA...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGACTTCCCACTAGAATCTaGTGTGCCTGGGTCAGCTCC +
Preference number: 5 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGLPTRI*CAWVSS
Trigger: GGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAG...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GATCGACAAAGTGCCTTCAGCACAGCGAGCGCCAGTGCTGCGGTGGCCTGGGTGATGATTACTCAGAGATaGAAGTTTCTTCTTCGCAGC +
Preference number: 5 (lower is better)
Translates to: DRQSAFSTASASAAVAWVMITQR*KFLLRS
Trigger: GCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCAT...CACCCAGGCCACCGCAGCACTGGCGCTCGCTGTGCTGAAGGCACTTTGTCGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCGCTCCACATTGTCTTTaGACCTGGACAGAGGACTGC +
Preference number: 5 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCAPHCL*TWTEDC
Trigger: GCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAGC...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CCAGGGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCAATATGAGCTCCACATaGTCTTTTGACCTGGACAGA +
Preference number: 5 (lower is better)
Translates to: PGLADRFTHVQVTDPSGGNMSST*SFDLDR
Trigger: TCTGTCCAGGTCAAAAGACAATGTGGAGCTCATATT...GCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCCTCACTCTGGAGAGTTaGAAGCTTCTGCCGGTTTGC +
Preference number: 5 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCLTLES*KLLPVC
Trigger: GCAAACCGGCAGAAGCTTCAAACTCTCCAGAGTGAG...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp TTGTCACTCCCAAGAGATGCGCTCTCTCTAGGAAGTGGGAAGCTCTGCTCCTCGCAGCTGCTGTTCTCTTaGGTGGTGATTGTGACCAGC +
Preference number: 5 (lower is better)
Translates to: LSLPRDALSLGSGKLCSSQLLFS*VVIVTS
Trigger: GCTGGTCACAATCACCACCAAAGAGAACAGCAGCTG...CGAGGAGCAGAGCTTCCCACTTCCTAGAGAGAGCGCATCTCTTGGGAGTGACAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GCTAGGGCACACGGGGAACTCTTCGTGCAGCGCCACAGGAGTTCTAATCATGAACAGCTGCTGTTCTCTTaGGTGGTGATTGTGACCAGC +
Preference number: 5 (lower is better)
Translates to: ARAHGELFVQRHRSSNHEQLLFS*VVIVTS
Trigger: GCTGGTCACAATCACCACCAAAGAGAACAGCAGCTG...TTCATGATTAGAACTCCTGTGGCGCTGCACGAAGAGTTCCCCGTGTGCCCTAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CCAGGGCTGGCTGACAGGTTCACTCATGTGCAGGTTACAGACCCCAGCGGAGGCAGCTCGTCACTCAAGTaGTTATTCACCTTCATTAGC +
Preference number: 5 (lower is better)
Translates to: PGLADRFTHVQVTDPSGGSSSLK*LFTFIS
Trigger: GCTAATGAAGGTGAATAACAACTTGAGTGACGAGCT...GCCTCCGCTGGGGTCTGTAACCTGCACATGAGTGAACCTGTCAGCCAGCCCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146044.8
CDS TCA 90 bp ATGGACACTGCAACATTCGTCACATATGAAAGTTCCCCTATTTACTaGCGCCCAGGAAGGATCAGGCCCGTTGCAGTCGGCGCACACGTC +
Preference number: 5 (lower is better)
Translates to: MDTATFVTYESSPIY*RPGRIRPVAVGAHV
Trigger: GACGTGTGCGCCGACTGCAACGGGCCTGATCCTTCCTGGGCGTCAGTAAATAGGGGAACTTTCATATGTGACGAATGTTGCAGTGTCCAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTGAGTTAGCACCATTGTaGTACAAGGTCTCAACCATC +
Preference number: 5 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGELAPL*YKVSTI
Trigger: GATGGTTGAGACCTTGTACAACAATGGTGCTAACTC...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CGTCTTTGGCAAGTAAAGACCGTGGTGCTGAGGCCACAGTGCCTTCCGGGAACGGAGTTAGCACCATTGTaGTACAAGGTCTCAACCATC +
Preference number: 5 (lower is better)
Translates to: RLWQVKTVVLRPQCLPGTELAPL*YKVSTI
Trigger: GATGGTTGAGACCTTGTACAACAATGGTGCTAACTC...CGTTCCCGGAAGGCACTGTGGCCTCAGCACCACGGTCTTTACTTGCCAAAGACG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGATCTTCTTCGCAGCTTTaGCCAACTCAGACAAATCCA +
Preference number: 5 (lower is better)
Translates to: GRCSCSECGRLEADVKGGSSSQL*PTQTNP
Trigger: TGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAGA...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCAGGCTGGCTTCTCCCATaGGGAGGTATGGCTTCTGGC +
Preference number: 5 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSGWLLP*GGMASG
Trigger: GCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCC...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ACAGGATGGAAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGAATTAGCTGCTGTCTCTaGGCCTCAGAAGCCACTAGG +
Preference number: 5 (lower is better)
Translates to: TGWKGSFLIDCTMLGRDGISCCL*ASEATR
Trigger: CCTAGTGGCTTCTGAGGCCAAGAGACAGCAGCTAAT...TCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTTCCATCCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS GCA 90 bp ATTGTTGTACAAGGTCTCAACCATCTGGAGCAGGGTTGGAGGCCATaGTGTGTGTTTAAGATGCCTCACTTGGGAGATATGGCGCCCCAG +
Preference number: 5 (lower is better)
Translates to: IVVQGLNHLEQGWRP*CVFKMPHLGDMAPQ
Trigger: CTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAAACACACAGCATGGCCTCCAACCCTGCTCCAGATGGTTGAGACCTTGTACAACAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS GCA 90 bp GGCCAGTCTATCCGTCAGCTCGTACTGTATTTCTATGAGGCGTTCTaGCAACTCATGGTGCCCTCCTTGCCTTGCATAGTCAACAGGAGT +
Preference number: 5 (lower is better)
Translates to: GQSIRQLVLYFYEAF*QLMVPSLPCIVNRS
Trigger: ACTCCTGTTGACTATGCAAGGCAAGGAGGGCACCATGAGTTGGCAGAACGCCTCATAGAAATACAGTACGAGCTGACGGATAGACTGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGCCCTGCTGGACATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGAGTTAGCACCATTGTaGTACAAGGTCTCAACCATC +
Preference number: 5 (lower is better)
Translates to: GPAGHPPALRLVCIDEWAELAPL*YKVSTI
Trigger: GATGGTTGAGACCTTGTACAACAATGGTGCTAACTC...TGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGATGTCCAGCAGGGCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GCTCTGCTCCTCGTGCACATGGAGAGACCCCACAGGATGGAAGGGAAGCTTCCTATAGAGTTAGCACCATaGTTGTACAAGGTCTCAACC +
Preference number: 5 (lower is better)
Translates to: ALLLVHMERPHRMEGKLPIELAP*LYKVST
Trigger: GGTTGAGACCTTGTACAACAATGGTGCTAACTCTAT...AGGAAGCTTCCCTTCCATCCTGTGGGGTCTCTCCATGTGCACGAGGAGCAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ATCCTCCAGCACTTAGGCTTGTGTGTATCGATGAGTGGGCAGGCCCCTGGAGCGATAGAGTTAGCACCATaGTTGTACAAGGTCTCAACC +
Preference number: 5 (lower is better)
Translates to: ILQHLGLCVSMSGQAPGAIELAP*LYKVST
Trigger: GGTTGAGACCTTGTACAACAATGGTGCTAACTCTAT...CGCTCCAGGGGCCTGCCCACTCATCGATACACACAAGCCTAAGTGCTGGAGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTGAGGAGTACTCAGGGTaGACCGGAAGGAAAGGGACG +
Preference number: 5 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTEEYSG*TGRKGT
Trigger: CGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCTC...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTAATATGAGCTCCACATaGTCTTTTGACCTGGACAGA +
Preference number: 5 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGNMSST*SFDLDR
Trigger: TCTGTCCAGGTCAAAAGACAATGTGGAGCTCATATT...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGGCGGTGCTCCTGCTCTGAATGTGGCCGACTGGAAGCTGATGTAAAGGGTGGAAATATGAGCTCCACATaGTCTTTTGACCTGGACAGA +
Preference number: 5 (lower is better)
Translates to: GRCSCSECGRLEADVKGGNMSST*SFDLDR
Trigger: TCTGTCCAGGTCAAAAGACAATGTGGAGCTCATATT...TCCACCCTTTACATCAGCTTCCAGTCGGCCACATTCAGAGCAGGAGCACCGCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTTGGCTGGTCGTTGTCTaGGCTCTCAGTGCTGTGCTG +
Preference number: 5 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTWLVVV*ALSAVL
Trigger: CAGCACAGCACTGAGAGCCAAGACAACGACCAGCCA...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATCAGCTGCTGTTCTCTTaGGTGGTGATTGTGACCAGC +
Preference number: 5 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHQLLFS*VVIVTS
Trigger: GCTGGTCACAATCACCACCAAAGAGAACAGCAGCTG...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS CCA 90 bp CTCCATACACGGCCAGCAATTCAGCCTGTAAGATCTGTCCTGCTTTaGAGGCGACGTGGAGTGGAGTGCTTCCTTTTTCAGGATGAAAGA +
Preference number: 5 (lower is better)
Translates to: LHTRPAIQPVRSVLL*RRRGVECFLFQDER
Trigger: TCTTTCATCCTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCTTACAGGCTGAATTGCTGGCCGTGTATGGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTCTCATGGTGCCCTCCTaGCCTTGCATAGTCAACAGG +
Preference number: 5 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTLMVPS*PCIVNR
Trigger: CCTGTTGACTATGCAAGGCAAGGAGGGCACCATGAG...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCTGCTGCTGGGGTATGATTACTCAGAGATaGAAGTTTCTTCTTCGCAGC +
Preference number: 5 (lower is better)
Translates to: LIDCTMLGRDGCCCCCWGMITQR*KFLLRS
Trigger: GCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCAT...ACCCCAGCAGCAGCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTTTTAAGATGCCTCACTaGGGAGATATGGCGCCCCAG +
Preference number: 5 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTFKMPH*GDMAPQ
Trigger: CTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAAA...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCCAGAGGACTGCCCTGTaGTCTCCTCTTGGCATCACT +
Preference number: 5 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFQRTAL*SPLGIT
Trigger: AGTGATGCCAAGAGGAGACAACAGGGCAGTCCTCTG...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTTCAGACTTGGGTTTTTaGGGGAACAGGGCTGCCATC +
Preference number: 5 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTSDLGF*GNRAAI
Trigger: GATGGCAGCCCTGTTCCCCAAAAAACCCAAGTCTGA...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTCAGCTGCTGTTCTCTTaGGTGGTGATTGTGACCAGC +
Preference number: 5 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTQLLFS*VVIVTS
Trigger: GCTGGTCACAATCACCACCAAAGAGAACAGCAGCTG...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GTTCTTGAGAGCGTCTGGAAATGCTGTACTGGCCCCGTGTTCTTTGATTTCTCAATTAGCTGCTGTCTCTaGGCCTCAGAAGCCACTAGG +
Preference number: 5 (lower is better)
Translates to: VLESVWKCCTGPVFFDFSISCCL*ASEATR
Trigger: CCTAGTGGCTTCTGAGGCCAAGAGACAGCAGCTAAT...TGAGAAATCAAAGAACACGGGGCCAGTACAGCATTTCCAGACGCTCTCAAGAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000146044.8
CDS-3UTR CAA 90 bp AAGGGAAGCTTCCTGATTGACTGCACGATGCTTGGAAGGGACGGATGCTGCTGCAGCTCGTCACTCAAGTaGTTATTCACCTTCATTAGC +
Preference number: 5 (lower is better)
Translates to: KGSFLIDCTMLGRDGCCCSSSLK*LFTFIS
Trigger: GCTAATGAAGGTGAATAACAACTTGAGTGACGAGCT...GCAGCAGCATCCGTCCCTTCCAAGCATCGTGCAGTCAATCAGGAAGCTTCCCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS TCA 90 bp AGACAACAGTCTCAGACAGGTCTCAAGATTCCCTGTTCTCACACTTaGATGGAGTTGCTTACTGAGATCTTTGGCCGTCACGCTGTCGTC +
Preference number: 5 (lower is better)
Translates to: RQQSQTGLKIPCSHT*MELLTEIFGRHAVV
Trigger: GACGACAGCGTGACGGCCAAAGATCTCAGTAAGCAACTCCATTCAAGTGTGAGAACAGGGAATCTTGAGACCTGTCTGAGACTGTTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS GCA 90 bp TTGGCCTCAGAAGCCACTAGGGCGCTTTTGACCTCCATAAATTCCTaGACAGTGACTGGTCCATCTGACAAATCTGAATCTAGGCTCTTC +
Preference number: 5 (lower is better)
Translates to: LASEATRALLTSINS*TVTGPSDKSESRLF
Trigger: GAAGAGCCTAGATTCAGATTTGTCAGATGGACCAGTCACTGTGCAGGAATTTATGGAGGTCAAAAGCGCCCTAGTGGCTTCTGAGGCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000130925.2
ENSMUST00000155908.8
CDS CCA 90 bp AGGCGACGTGGAGTGGAGTGCTTCCTTTTTCAGGATGAAAGAAGTTaGCTTGGGCTCCTAAAGACAACAGTCTCAGACAGGTCTCAAGAT +
Preference number: 5 (lower is better)
Translates to: RRRGVECFLFQDERS*LGLLKTTVSDRSQD
Trigger: ATCTTGAGACCTGTCTGAGACTGTTGTCTTTAGGAGCCCAAGCCAACTTCTTTCATCCTGAAAAAGGAAGCACTCCACTCCACGTCGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACCATCTGGAGCAGGGTaGGAGGCCATGCTGTGTGTT +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSPSGAG*EAMLCV
Trigger: AACACACAGCATGGCCTCCAACCCTGCTCCAGATGG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATTCTTCTTCGCAGCTTTaGCCAACTCAGACAAATCCA +
Preference number: 5 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHSSSQL*PTQTNP
Trigger: TGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAGA...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAGAGGAGTACTCAGGGTaGACCGGAAGGAAAGGGACG +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSEEYSG*TGRKGT
Trigger: CGTCCCTTTCCTTCCGGTCAACCCTGAGTACTCCTC...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCATGGCTGGTCGTTGTCTaGGCTCTCAGTGCTGTGCTG +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSWLVVV*ALSAVL
Trigger: CAGCACAGCACTGAGAGCCAAGACAACGACCAGCCA...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCGGCTGGCTTCTCCCATaGGGAGGTATGGCTTCTGGC +
Preference number: 5 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSGWLLP*GGMASG
Trigger: GCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCC...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATATAGAGTTAGCACCATaGTTGTACAAGGTCTCAACC +
Preference number: 5 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHIELAP*LYKVST
Trigger: GGTTGAGACCTTGTACAACAATGGTGCTAACTCTAT...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACTTCCCACTAGAATCTaGTGTGCCTGGGTCAGCTCC +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSLPTRI*CAWVSS
Trigger: GGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACAGAGGACTGCCCTGTaGTCTCCTCTTGGCATCACT +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSQRTAL*SPLGIT
Trigger: AGTGATGCCAAGAGGAGACAACAGGGCAGTCCTCTG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCATTTAAGATGCCTCACTaGGGAGATATGGCGCCCCAG +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSFKMPH*GDMAPQ
Trigger: CTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAAA...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCTTCCCACTAGAATCTaGTGTGCCTGGGTCAGCTCC +
Preference number: 5 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSLPTRI*CAWVSS
Trigger: GGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCTCATGGTGCCCTCCTaGCCTTGCATAGTCAACAGG +
Preference number: 5 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSLMVPS*PCIVNR
Trigger: CCTGTTGACTATGCAAGGCAAGGAGGGCACCATGAG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp TCTCCAGGATGCATTGGCCATGTTGTAAGAGGGACTATGAGGCAGGCTCAGCATATGATTACTCAGAGATaGAAGTTTCTTCTTCGCAGC +
Preference number: 5 (lower is better)
Translates to: SPGCIGHVVRGTMRQAQHMITQR*KFLLRS
Trigger: GCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCAT...ATGCTGAGCCTGCCTCATAGTCCCTCTTACAACATGGCCAATGCATCCTGGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAGCTCCACATTGTCTTTaGACCTGGACAGAGGACTGC +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSAPHCL*TWTEDC
Trigger: GCAGTCCTCTGTCCAGGTCAAAAGACAATGTGGAGC...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCATCAGACTTGGGTTTTTaGGGGAACAGGGCTGCCATC +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSSDLGF*GNRAAI
Trigger: GATGGCAGCCCTGTTCCCCAAAAAACCCAAGTCTGA...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCACAGCTGCTGTTCTCTTaGGTGGTGATTGTGACCAGC +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSQLLFS*VVIVTS
Trigger: GCTGGTCACAATCACCACCAAAGAGAACAGCAGCTG...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS GCA 90 bp AAACAAATGATTACTCAGAGATTGAAGTTTCTTCTTCGCAGCTTTTaGCAACTCAGACAAATCCAGGCTGAGCCGTCTGTCTGCCCTCTG +
Preference number: 5 (lower is better)
Translates to: KQMITQRLKFLLRSF*QLRQIQAEPSVCPL
Trigger: CAGAGGGCAGACAGACGGCTCAGCCTGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCATTTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112183.8
CDS GCA 90 bp AAACAAATGATTACTCAGAGATTGAAGTTTCTTCTTCGCAGCTTTTaGCAACTCAGACAAATCCAGGAGCCGTCTGTCTGCCCTCTGAGG +
Preference number: 5 (lower is better)
Translates to: KQMITQRLKFLLRSF*QLRQIQEPSVCPLR
Trigger: CCTCAGAGGGCAGACAGACGGCTCCTGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCATTTGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131993.8
CDS-3UTR CAA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCTTTAAGATGCCTCACTaGGGAGATATGGCGCCCCAG +
Preference number: 5 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSFKMPH*GDMAPQ
Trigger: CTGGGGCGCCATATCTCCCAAGTGAGGCATCTTAAA...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp CAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCAGCCACAGGCTACTTTTCTCTTCTTCGCAGCTTTaGCCAACTCAGACAAATCCA +
Preference number: 5 (lower is better)
Translates to: QTSGSLKNQSTGSHRLLFSSSQL*PTQTNP
Trigger: TGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAGA...GAAAAGTAGCCTGTGGCTGCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp AAATGTCAAGAAATAACTCAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCTGGCTTGCAGTGTCCTaGTGGTCAGAGCCAGTCTGC +
Preference number: 5 (lower is better)
Translates to: KCQEITQTSGSLKNQSTGWLAVS*WSEPVC
Trigger: GCAGACTGGCTCTGACCACAAGGACACTGCAAGCCA...GCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTGAGTTATTTCTTGACATTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCTCAGACTTGGGTTTTTaGGGGAACAGGGCTGCCATC +
Preference number: 5 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSSDLGF*GNRAAI
Trigger: GATGGCAGCCCTGTTCCCCAAAAAACCCAAGTCTGA...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCCAGCTGCTGTTCTCTTaGGTGGTGATTGTGACCAGC +
Preference number: 5 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSQLLFS*VVIVTS
Trigger: GCTGGTCACAATCACCACCAAAGAGAACAGCAGCTG...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCGCCACTAGGGCGCTTTaGACCTCCATAAATTCCTGC +
Preference number: 5 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSATRAL*TSINSC
Trigger: GCAGGAATTTATGGAGGTCAAAAGCGCCCTAGTGGC...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
ENSMUST00000155908.8
CDS-3UTR CAA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCATTAGCTGCTGTCTCTaGGCCTCAGAAGCCACTAGG +
Preference number: 5 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSISCCL*ASEATR
Trigger: CCTAGTGGCTTCTGAGGCCAAGAGACAGCAGCTAAT...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
ENSMUST00000155908.8
CDS-3UTR CAA 90 bp CATAACCAGTGGGGCACAGATTCCAGAAGGATTTTACAGGCAGGGACAGTAACTATGATTACTCAGAGATaGAAGTTTCTTCTTCGCAGC +
Preference number: 5 (lower is better)
Translates to: HNQWGTDSRRILQAGTVTMITQR*KFLLRS
Trigger: GCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCAT...AGTTACTGTCCCTGCCTGTAAAATCCTTCTGGAATCTGTGCCCCACTGGTTATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAGAGTTAGCACCATTGTaGTACAAGGTCTCAACCATC +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSELAPL*YKVSTI
Trigger: GATGGTTGAGACCTTGTACAACAATGGTGCTAACTC...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCATCTTCTTCGCAGCTTTaGCCAACTCAGACAAATCCA +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSSSSQL*PTQTNP
Trigger: TGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAGA...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCATAGAGTTAGCACCATaGTTGTACAAGGTCTCAACC +
Preference number: 5 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSIELAP*LYKVST
Trigger: GGTTGAGACCTTGTACAACAATGGTGCTAACTCTAT...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp GGACAGGAAAGTTGTAACACACTTGGAACAATGACTTTTGAACACATGGGGTCAATGATTACTCAGAGATaGAAGTTTCTTCTTCGCAGC +
Preference number: 5 (lower is better)
Translates to: GQESCNTLGTMTFEHMGSMITQR*KFLLRS
Trigger: GCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCAT...TGACCCCATGTGTTCAAAAGTCATTGTTCCAAGTGTGTTACAACTTTCCTGTCC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCAATATGAGCTCCACATaGTCTTTTGACCTGGACAGA +
Preference number: 5 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSNMSST*SFDLDR
Trigger: TCTGTCCAGGTCAAAAGACAATGTGGAGCTCATATT...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp ATGTTTTGTAAAAATCTGAAGAGTTCGTGTATAGTCTATGGGCAGGCAGACAGCATGATTACTCAGAGATaGAAGTTTCTTCTTCGCAGC +
Preference number: 5 (lower is better)
Translates to: MFCKNLKSSCIVYGQADSMITQR*KFLLRS
Trigger: GCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCAT...GCTGTCTGCCTGCCCATAGACTATACACGAACTCTTCAGATTTTTACAAAACAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS-3UTR CAA 90 bp AAATGTCAAGAAATAACTCAAACTTCTGGTTCCTTGAAAAACCAAAGCACTGGCATAGAGTTAGCACCATaGTTGTACAAGGTCTCAACC +
Preference number: 5 (lower is better)
Translates to: KCQEITQTSGSLKNQSTGIELAP*LYKVST
Trigger: GGTTGAGACCTTGTACAACAATGGTGCTAACTCTAT...GCCAGTGCTTTGGTTTTTCAAGGAACCAGAAGTTTGAGTTATTTCTTGACATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS CCA 72 bp CTGCCCCGGGCAGATGGCCGTCGCTTTAGGGACGAGTaGCTTGCAGTGTCCTTGTGGTCAGAGCCAGTCTGC +
Preference number: 6 (lower is better)
Translates to: LPRADGRRFRDE*LAVSLWSEPVC
Trigger: GCAGACTGGCTCTGACCACAAGGACACTGCAAGCCACTCGTCCCTAAAGCGACGGCCATCTGCCCGGGGCAG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS CAA 90 bp AGCCATCACCTTGCCAGAGCATGCTCCGCTGCCGTCCCTTCCGGGTaGACCCCGTGTCGTCTGGCTCAGGGTCACAGGCAGTGTTGTCAT +
Preference number: 6 (lower is better)
Translates to: SHHLARACSAAVPSG*TPCRLAQGHRQCCH
Trigger: ATGACAACACTGCCTGTGACCCTGAGCCAGACGACACGGGGTCAACCCGGAAGGGACGGCAGCGGAGCATGCTCTGGCAAGGTGATGGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS TCA 72 bp TGCTTCTCCAGTCTGGAGGCATGCGTGGGGAAGGGTTaGAGTCTCGTCCGGCTCTCCTCAGGGTGGCTGGCT +
Preference number: 6 (lower is better)
Translates to: CFSSLEACVGKG*SLVRLSSGWLA
Trigger: AGCCAGCCACCCTGAGGAGAGCCGGACGAGACTTCAACCCTTCCCCACGCATGCCTCCAGACTGGAGAAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS CAA 72 bp CCCGGGCAGATGGCCGTCGCTTTAGGGACGAGTGGCTaGCAGTGTCCTTGTGGTCAGAGCCAGTCTGCACCT +
Preference number: 6 (lower is better)
Translates to: PGQMAVALGTSG*QCPCGQSQSAP
Trigger: AGGTGCAGACTGGCTCTGACCACAAGGACACTGCAAGCCACTCGTCCCTAAAGCGACGGCCATCTGCCCGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS TCA 72 bp TTCTGCACTCCGACTGGAGCCGGTAGGCACTGGACGTaGGTAGGCGGAGGGAAGTCCTCACCGTGTCAGACT +
Preference number: 6 (lower is better)
Translates to: FCTPTGAGRHWT*VGGGKSSPCQT
Trigger: AGTCTGACACGGTGAGGACTTCCCTCCGCCTACTCACGTCCAGTGCCTACCGGCTCCAGTCGGAGTGCAGAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CCA 72 bp GGAGGTATGGCTTCTGGCCTGATCCAGTCTCGTACATaGACATGGGTCTACTGCCCCGGGCAGATGGCCGTC +
Preference number: 6 (lower is better)
Translates to: GGMASGLIQSRT*TWVYCPGQMAV
Trigger: GACGGCCATCTGCCCGGGGCAGTAGACCCATGTCCATGTACGAGACTGGATCAGGCCAGAAGCCATACCTCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS CCA 72 bp AGGGTTGAAGTCTCGTCCGGCTCTCCTCAGGGTGGCTaGCTTCTCCCATTGGGAGGTATGGCTTCTGGCCTG +
Preference number: 6 (lower is better)
Translates to: RVEVSSGSPQGG*LLPLGGMASGL
Trigger: CAGGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCGGACGAGACTTCAACCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS CCA 72 bp GGGTGCTGTTCTGCTTCTCCAGTCTGGAGGCATGCGTaGGGAAGGGTTGAAGTCTCGTCCGGCTCTCCTCAG +
Preference number: 6 (lower is better)
Translates to: GCCSASPVWRHA*GRVEVSSGSPQ
Trigger: CTGAGGAGAGCCGGACGAGACTTCAACCCTTCCCCACGCATGCCTCCAGACTGGAGAAGCAGAACAGCACCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS CAA 72 bp TCGTCCGGCTCTCCTCAGGGTGGCTGGCTTCTCCCATaGGGAGGTATGGCTTCTGGCCTGATCCAGTCTCGT +
Preference number: 6 (lower is better)
Translates to: SSGSPQGGWLLP*GGMASGLIQSR
Trigger: ACGAGACTGGATCAGGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCGGACGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS TCA 72 bp CTTGCAGTGTCCTTGTGGTCAGAGCCAGTCTGCACCTaGCAGGCACTGGCTGTGGCCTGTCTCCTGAGGCTT +
Preference number: 6 (lower is better)
Translates to: LAVSLWSEPVCT*QALAVACLLRL
Trigger: AAGCCTCAGGAGACAGGCCACAGCCAGTGCCTGTCAGGTGCAGACTGGCTCTGACCACAAGGACACTGCAAG
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS TCA 72 bp ACAAGTGCACTCCTCCCAATATGCGTGGGGAAGGGTTaGAGTCTCGTCCGGCTCTCCTCAGGGTGGCTGGCT +
Preference number: 6 (lower is better)
Translates to: TSALLPICVGKG*SLVRLSSGWLA
Trigger: AGCCAGCCACCCTGAGGAGAGCCGGACGAGACTTCAACCCTTCCCCACGCATATTGGGAGGAGTGCACTTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000112185.9
ENSMUST00000130925.2
CDS GCA 72 bp ACGACGGTCGTCTCGGTTACCAAGGTACTGTGGTTCTaGGTGGCAAGCCAGACTGCGTCAGTCTCTCGCCTG +
Preference number: 6 (lower is better)
Translates to: TTVVSVTKVLWF*VASQTASVSRL
Trigger: CAGGCGAGAGACTGACGCAGTCTGGCTTGCCACGCAGAACCACAGTACCTTGGTAACCGAGACGACCGTCGT
60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS GCA 72 bp CTGTATCTGGCAATAAGCCATCACCTTGCCAGAGCATaGTCCGCTGCCGTCCCTTCCGGGTTGACCCCGTGT +
Preference number: 6 (lower is better)
Translates to: LYLAISHHLARA*SAAVPSGLTPC
Trigger: ACACGGGGTCAACCCGGAAGGGACGGCAGCGGAGCATGCTCTGGCAAGGTGATGGCTTATTGCCAGATACAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000146044.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 90 bp GTTGAAGTCTCGTCCGGCTCTCCTCAGGGTGGCTGGCTTCTCCCATaGGGAGGTATGGCTTCTGGCCTGATCCAGTCTCGTACATGGACA +
Preference number: 6 (lower is better)
Translates to: VEVSSGSPQGGWLLP*GGMASGLIQSRTWT
Trigger: TGTCCATGTACGAGACTGGATCAGGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCCACCCTGAGGAGAGCCGGACGAGACTTCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS GCA 72 bp GGGGAAGGAGGGCAGAGACGAAGAGGAGGTCACAAGTaGACTCCTCCCAATATGCGTGGGGAAGGGTTGAAG +
Preference number: 6 (lower is better)
Translates to: GEGGQRRRGGHK*TPPNMRGEGLK
Trigger: CTTCAACCCTTCCCCACGCATATTGGGAGGAGTGCACTTGTGACCTCCTCTTCGTCTCTGCCCTCCTTCCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000112185.9
ENSMUST00000130925.2
CDS CCA 72 bp CGGTCGTCTCGGTTACCAAGGTACTGTGGTTCTGCGTaGCAAGCCAGACTGCGTCAGTCTCTCGCCTGTCAA +
Preference number: 6 (lower is better)
Translates to: RSSRLPRYCGSA*QARLRQSLACQ
Trigger: TTGACAGGCGAGAGACTGACGCAGTCTGGCTTGCCACGCAGAACCACAGTACCTTGGTAACCGAGACGACCG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CCA 72 bp ATGGCTTCTGGCCTGATCCAGTCTCGTACATGGACATaGGTCTACTGCCCCGGGCAGATGGCCGTCGCTTTA +
Preference number: 6 (lower is better)
Translates to: MASGLIQSRTWT*VYCPGQMAVAL
Trigger: TAAAGCGACGGCCATCTGCCCGGGGCAGTAGACCCATGTCCATGTACGAGACTGGATCAGGCCAGAAGCCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS CCA 72 bp AATCACTCTCCGGGGTGCTGTTCTGCTTCTCCAGTCTaGAGGCATGCGTGGGGAAGGGTTGAAGTCTCGTCC +
Preference number: 6 (lower is better)
Translates to: NHSPGCCSASPV*RHAWGRVEVSS
Trigger: GGACGAGACTTCAACCCTTCCCCACGCATGCCTCCAGACTGGAGAAGCAGAACAGCACCCCGGAGAGTGATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS TCA 72 bp GCTGGCTTCTCCCATTGGGAGGTATGGCTTCTGGCCTaGTCCAGTCTCGTACATGGACATGGGTCTACTGCC +
Preference number: 6 (lower is better)
Translates to: AGFSHWEVWLLA*SSLVHGHGSTA
Trigger: GGCAGTAGACCCATGTCCATGTACGAGACTGGATCAGGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS GCA 72 bp CTGGAGAGTTTGAAGCTTCTGCCGGTTTGCCTTGCTTaGCCTCGTCTCCACGTCTGTGTCTTCATCGGAGGC +
Preference number: 6 (lower is better)
Translates to: LESLKLLPVCLA*PRLHVCVFIGG
Trigger: GCCTCCGATGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTCAAACTCTCCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS CCA 72 bp AAAGGGACGACGGTCGTCTCGGTTACCAAGGTACTGTaGTTCTGCGTGGCAAGCCAGACTGCGTCAGTCTCT +
Preference number: 6 (lower is better)
Translates to: KGTTVVSVTKVL*FCVASQTASVS
Trigger: AGAGACTGACGCAGTCTGGCTTGCCACGCAGAACCACAGTACCTTGGTAACCGAGACGACCGTCGTCCCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CCA 72 bp GGGTGGCTGGCTTCTCCCATTGGGAGGTATGGCTTCTaGCCTGATCCAGTCTCGTACATGGACATGGGTCTA +
Preference number: 6 (lower is better)
Translates to: GWLASPIGRYGF*PDPVSYMDMGL
Trigger: TAGACCCATGTCCATGTACGAGACTGGATCAGGCCAGAAGCCATACCTCCCAATGGGAGAAGCCAGCCACCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000178440.8
CDS CCA 72 bp AAGAGGAGGTCACAAGTGCACTCCTCCCAATATGCGTaGGGAAGGGTTGAAGTCTCGTCCGGCTCTCCTCAG +
Preference number: 6 (lower is better)
Translates to: KRRSQVHSSQYA*GRVEVSSGSPQ
Trigger: CTGAGGAGAGCCGGACGAGACTTCAACCCTTCCCCACGCATATTGGGAGGAGTGCACTTGTGACCTCCTCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000112185.9
ENSMUST00000130925.2
CDS GCA 72 bp CACTCTGGAGAGTTTGAAGCTTCTGCCGGTTTGCCTTaGTTGCCCTCGTCTCCACGTCTGTGTCTTCATCGG +
Preference number: 6 (lower is better)
Translates to: HSGEFEASAGLP*LPSSPRLCLHR
Trigger: CCGATGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTCAAACTCTCCAGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS CCA 72 bp GTCTGTGTCTTCATCGGAGGCCACACTGTCATAGTCTaGCTGGTCGTTGTCTTGGCTCTCAGTGCTGTGCTG +
Preference number: 6 (lower is better)
Translates to: VCVFIGGHTVIV*LVVVLALSAVL
Trigger: CAGCACAGCACTGAGAGCCAAGACAACGACCAGCCAGACTATGACAGTGTGGCCTCCGATGAAGACACAGAC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 72 bp TCTGGAGAGTTTGAAGCTTCTGCCGGTTTGCCTTGCTaGCCCTCGTCTCCACGTCTGTGTCTTCATCGGAGG +
Preference number: 6 (lower is better)
Translates to: SGEFEASAGLPC*PSSPRLCLHRR
Trigger: CCTCCGATGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTCAAACTCTCCAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS CAA 72 bp TTCTCCAGTCTGGAGGCCTTCATTAGCTGCTGTCTCTaGGCCTCAGAAGCCACTAGGGCGCTTTTGACCTCC +
Preference number: 6 (lower is better)
Translates to: FSSLEAFISCCL*ASEATRALLTS
Trigger: GGAGGTCAAAAGCGCCCTAGTGGCTTCTGAGGCCAAGAGACAGCAGCTAATGAAGGCCTCCAGACTGGAGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000155908.8
CDS CAA 90 bp CCCTCCTTGCCTTGCATAGTCAACAGGAGTCTTCCCACTAGAATCTaGTGTGCCTGGGTCAGCTCCATACACGGCCAGCAATTCAGCCTG +
Preference number: 6 (lower is better)
Translates to: PSLPCIVNRSLPTRI*CAWVSSIHGQQFSL
Trigger: CAGGCTGAATTGCTGGCCGTGTATGGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAGACTCCTGTTGACTATGCAAGGCAAGGAGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 90 bp AGTTCTCACTCTGGAGAGTTTGAAGCTTCTGCCGGTTTGCCTTGCTaGCCCTCGTCTCCACGTCTGTGTCTTCATCGGAGGCCACACTGT +
Preference number: 6 (lower is better)
Translates to: SSHSGEFEASAGLPC*PSSPRLCLHRRPHC
Trigger: ACAGTGTGGCCTCCGATGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTCAAACTCTCCAGAGTGAGAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS TCA 72 bp GATTCCCTGTTCTCACACTTGAATGGAGTTGCTTACTaGGATCTTTGGCCGTCACGCTGTCGTCCTCGCGGC +
Preference number: 6 (lower is better)
Translates to: DSLFSHLNGVAY*DLWPSRCRPRG
Trigger: GCCGCGAGGACGACAGCGTGACGGCCAAAGATCTCAGTAAGCAACTCCATTCAAGTGTGAGAACAGGGAATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS TCA 72 bp AGGCCAGTCTATCCGTCAGCTCGTACTGTATTTCTATaGGGCGTTCTGCCAACTCATGGTGCCCTCCTTGCC +
Preference number: 6 (lower is better)
Translates to: RPVYPSARTVFL*GVLPTHGALLA
Trigger: GGCAAGGAGGGCACCATGAGTTGGCAGAACGCCTCATAGAAATACAGTACGAGCTGACGGATAGACTGGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS GCA 72 bp GTTCTCACTCTGGAGAGTTTGAAGCTTCTGCCGGTTTaGCTTGCTTGCCCTCGTCTCCACGTCTGTGTCTTC +
Preference number: 6 (lower is better)
Translates to: VLTLESLKLLPV*LACPRLHVCVF
Trigger: GAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTCAAACTCTCCAGAGTGAGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS CCA 72 bp CGGCCAGCAATTCAGCCTGTAAGATCTGTCCTGCTTTaGAGGCGACGTGGAGTGGAGTGCTTCCTTTTTCAG +
Preference number: 6 (lower is better)
Translates to: RPAIQPVRSVLL*RRRGVECFLFQ
Trigger: CTGAAAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCTTACAGGCTGAATTGCTGGCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CCA 72 bp GTCAACAGGAGTCTTCCCACTAGAATCTTGTGTGCCTaGGTCAGCTCCATACACGGCCAGCAATTCAGCCTG +
Preference number: 6 (lower is better)
Translates to: VNRSLPTRILCA*VSSIHGQQFSL
Trigger: CAGGCTGAATTGCTGGCCGTGTATGGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAGACTCCTGTTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 72 bp GTTCTCACACTTGAATGGAGTTGCTTACTGAGATCTTaGGCCGTCACGCTGTCGTCCTCGCGGCAGGGCAAT +
Preference number: 6 (lower is better)
Translates to: VLTLEWSCLLRS*AVTLSSSRQGN
Trigger: ATTGCCCTGCCGCGAGGACGACAGCGTGACGGCCAAAGATCTCAGTAAGCAACTCCATTCAAGTGTGAGAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 72 bp TTTGACCTGGACAGAGGACTGCCCTGTTGTCTCCTCTaGGCATCACTGAGGATGTCGATGACCAGCGTAGCA +
Preference number: 6 (lower is better)
Translates to: FDLDRGLPCCLL*ASLRMSMTSVA
Trigger: TGCTACGCTGGTCATCGACATCCTCAGTGATGCCAAGAGGAGACAACAGGGCAGTCCTCTGTCCAGGTCAAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 72 bp AATCTGAATCTAGGCTCTTCTGCCGGTTTGCCTTGCTaGCCCTCGTCTCCACGTCTGTGTCTTCATCGGAGG +
Preference number: 6 (lower is better)
Translates to: NLNLGSSAGLPC*PSSPRLCLHRR
Trigger: CCTCCGATGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGAGCCTAGATTCAGATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000130925.2
ENSMUST00000155908.8
CDS TCA 72 bp GCAACATTCGTCACATATGAAAGTTCCCCTATTTACTaGCGCCCAGGAAGGATCAGGCCCGTTGCAGTCGGC +
Preference number: 6 (lower is better)
Translates to: ATFVTYESSPIY*RPGRIRPVAVG
Trigger: GCCGACTGCAACGGGCCTGATCCTTCCTGGGCGTCAGTAAATAGGGGAACTTTCATATGTGACGAATGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS TCA 72 bp GCAACATTCGTCACATATGAAAGTTCCCCTATTTACTaGCGCCCAGGAAGGATCGTAGACCGGGCTCGGTGC +
Preference number: 6 (lower is better)
Translates to: ATFVTYESSPIY*RPGRIVDRARC
Trigger: GCACCGAGCCCGGTCTACGATCCTTCCTGGGCGTCAGTAAATAGGGGAACTTTCATATGTGACGAATGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131016.2
CDS GCA 72 bp ACAAATCTGAATCTAGGCTCTTCTGCCGGTTTGCCTTaGTTGCCCTCGTCTCCACGTCTGTGTCTTCATCGG +
Preference number: 6 (lower is better)
Translates to: TNLNLGSSAGLP*LPSSPRLCLHR
Trigger: CCGATGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGAGCCTAGATTCAGATTTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000130925.2
ENSMUST00000155908.8
CDS CCA 72 bp TCACTGAGGATGTCGATGACCAGCGTAGCAAACTCGTaGGCGTTAAACCGAGCTAATTTCTGTCTGCCCTGG +
Preference number: 6 (lower is better)
Translates to: SLRMSMTSVANS*ALNRANFCLPW
Trigger: CCAGGGCAGACAGAAATTAGCTCGGTTTAACGCCCACGAGTTTGCTACGCTGGTCATCGACATCCTCAGTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 72 bp ACGGCCAGCAATTCAGCCTGTAAGATCTGTCCTGCTTaGGAGGCGACGTGGAGTGGAGTGCTTCCTTTTTCA +
Preference number: 6 (lower is better)
Translates to: TASNSACKICPA*EATWSGVLPFS
Trigger: TGAAAAAGGAAGCACTCCACTCCACGTCGCCTCCAAAGCAGGACAGATCTTACAGGCTGAATTGCTGGCCGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 72 bp CCTTGCATAGTCAACAGGAGTCTTCCCACTAGAATCTaGTGTGCCTGGGTCAGCTCCATACACGGCCAGCAA +
Preference number: 6 (lower is better)
Translates to: PCIVNRSLPTRI*CAWVSSIHGQQ
Trigger: TTGCTGGCCGTGTATGGAGCTGACCCAGGCACACAAGATTCTAGTGGGAAGACTCCTGTTGACTATGCAAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 72 bp AGTTCTCACTCTGGAGAGTTTGAAGCTTCTGCCGGTTaGCCTTGCTTGCCCTCGTCTCCACGTCTGTGTCTT +
Preference number: 6 (lower is better)
Translates to: SSHSGEFEASAG*PCLPSSPRLCL
Trigger: AAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGCTTCAAACTCTCCAGAGTGAGAACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000043283.14
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000178440.8
CDS CAA 72 bp GACAAATCTGAATCTAGGCTCTTCTGCCGGTTTGCCTaGCTTGCCCTCGTCTCCACGTCTGTGTCTTCATCG +
Preference number: 6 (lower is better)
Translates to: DKSESRLFCRFA*LALVSTSVSSS
Trigger: CGATGAAGACACAGACGTGGAGACGAGGGCAAGCAAGGCAAACCGGCAGAAGAGCCTAGATTCAGATTTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000130925.2
ENSMUST00000155908.8
CDS CAA 72 bp TGCTGTCTCTTGGCCTCAGAAGCCACTAGGGCGCTTTaGACCTCCATAAATTCCTGCACAGTGACTGGTCCA +
Preference number: 6 (lower is better)
Translates to: CCLLASEATRAL*TSINSCTVTGP
Trigger: TGGACCAGTCACTGTGCAGGAATTTATGGAGGTCAAAAGCGCCCTAGTGGCTTCTGAGGCCAAGAGACAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000086564.11
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000155908.8
CDS CAA 90 bp ACATTGTCTTTTGACCTGGACAGAGGACTGCCCTGTTGTCTCCTCTaGGCATCACTGAGGATGTCGATGACCAGCGTAGCAAACTCGTGG +
Preference number: 6 (lower is better)
Translates to: TLSFDLDRGLPCCLL*ASLRMSMTSVANSW
Trigger: CCACGAGTTTGCTACGCTGGTCATCGACATCCTCAGTGATGCCAAGAGGAGACAACAGGGCAGTCCTCTGTCCAGGTCAAAAGACAATGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 90 bp GTCTTCATCGGAGGCCACACTGTCATAGTCTGGCTGGTCGTTGTCTaGGCTCTCAGTGCTGTGCTGGGTACTGACTGTTCTCAATATGAG +
Preference number: 6 (lower is better)
Translates to: VFIGGHTVIVWLVVV*ALSAVLGTDCSQYE
Trigger: CTCATATTGAGAACAGTCAGTACCCAGCACAGCACTGAGAGCCAAGACAACGACCAGCCAGACTATGACAGTGTGGCCTCCGATGAAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000130925.2
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS TCA 72 bp TCGCGGCAGGGCAATCGGTGGACGAACGCTAACATCTaGTACTTGGCTCTGATGAATTCTGCTTTATTGGGG +
Preference number: 6 (lower is better)
Translates to: SRQGNRWTNANI*YLALMNSALLG
Trigger: CCCCAATAAAGCAGAATTCATCAGAGCCAAGTATCAGATGTTAGCGTTCGTCCACCGATTGCCCTGCCGCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS GCA 72 bp CAAGGTCTCAACCATCTGGAGCAGGGTTGGAGGCCATaGTGTGTGTTTAAGATGCCTCACTTGGGAGATATG +
Preference number: 6 (lower is better)
Translates to: QGLNHLEQGWRP*CVFKMPHLGDM
Trigger: CATATCTCCCAAGTGAGGCATCTTAAACACACAGCATGGCCTCCAACCCTGCTCCAGATGGTTGAGACCTTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS GCA 72 bp ATCCGTCAGCTCGTACTGTATTTCTATGAGGCGTTCTaGCAACTCATGGTGCCCTCCTTGCCTTGCATAGTC +
Preference number: 6 (lower is better)
Translates to: IRQLVLYFYEAF*QLMVPSLPCIV
Trigger: GACTATGCAAGGCAAGGAGGGCACCATGAGTTGGCAGAACGCCTCATAGAAATACAGTACGAGCTGACGGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS TCA 72 bp TCTTCGCAGCTTTTGCCAACTCAGACAAATCCAGGCTaGGCCGTCTGTCTGCCCTCTGAGGAATTAGAAAGT +
Preference number: 6 (lower is better)
Translates to: SSQLLPTQTNPG*AVCLPSEELES
Trigger: ACTTTCTAATTCCTCAGAGGGCAGACAGACGGCTCAGCCTGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000112183.8
CDS GCA 72 bp GTCTCAAGATTCCCTGTTCTCACACTTGAATGGAGTTaGTTACTGAGATCTTTGGCCGTCACGCTGTCGTCC +
Preference number: 6 (lower is better)
Translates to: VSRFPVLTLEWS*LLRSLAVTLSS
Trigger: GGACGACAGCGTGACGGCCAAAGATCTCAGTAAGCAACTCCATTCAAGTGTGAGAACAGGGAATCTTGAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 72 bp CTCAAGTTGTTATTCACCTTCATTAGCTGCTGTCTCTaGGCCTCAGAAGCCACTAGGGCGCTTTTGACCTCC +
Preference number: 6 (lower is better)
Translates to: LKLLFTFISCCL*ASEATRALLTS
Trigger: GGAGGTCAAAAGCGCCCTAGTGGCTTCTGAGGCCAAGAGACAGCAGCTAATGAAGGTGAATAACAACTTGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS CAA 90 bp TTCATTAGCTGCTGTCTCTTGGCCTCAGAAGCCACTAGGGCGCTTTaGACCTCCATAAATTCCTGCACAGTGACTGGTCCATCTGACAAA +
Preference number: 6 (lower is better)
Translates to: FISCCLLASEATRAL*TSINSCTVTGPSDK
Trigger: TTTGTCAGATGGACCAGTCACTGTGCAGGAATTTATGGAGGTCAAAAGCGCCCTAGTGGCTTCTGAGGCCAAGAGACAGCAGCTAATGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000086564.11
ENSMUST00000130925.2
ENSMUST00000146044.8
ENSMUST00000155908.8
CDS CCA 72 bp AGACAGGTCTCAAGATTCCCTGTTCTCACACTTGAATaGAGTTGCTTACTGAGATCTTTGGCCGTCACGCTG +
Preference number: 6 (lower is better)
Translates to: RQVSRFPVLTLE*SCLLRSLAVTL
Trigger: CAGCGTGACGGCCAAAGATCTCAGTAAGCAACTCCATTCAAGTGTGAGAACAGGGAATCTTGAGACCTGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CCA 72 bp GGAGTGGAGTGCTTCCTTTTTCAGGATGAAAGAAGTTaGCTTGGGCTCCTAAAGACAACAGTCTCAGACAGG +
Preference number: 6 (lower is better)
Translates to: GVECFLFQDERS*LGLLKTTVSDR
Trigger: CCTGTCTGAGACTGTTGTCTTTAGGAGCCCAAGCCAACTTCTTTCATCCTGAAAAAGGAAGCACTCCACTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 90 bp AGCTCGTCACTCAAGTTGTTATTCACCTTCATTAGCTGCTGTCTCTaGGCCTCAGAAGCCACTAGGGCGCTTTTGACCTCCATAAATTCC +
Preference number: 6 (lower is better)
Translates to: SSSLKLLFTFISCCL*ASEATRALLTSINS
Trigger: GGAATTTATGGAGGTCAAAAGCGCCCTAGTGGCTTCTGAGGCCAAGAGACAGCAGCTAATGAAGGTGAATAACAACTTGAGTGACGAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8
CDS TCA 72 bp TCTCAGACAGGTCTCAAGATTCCCTGTTCTCACACTTaGATGGAGTTGCTTACTGAGATCTTTGGCCGTCAC +
Preference number: 6 (lower is better)
Translates to: SQTGLKIPCSHT*MELLTEIFGRH
Trigger: GTGACGGCCAAAGATCTCAGTAAGCAACTCCATTCAAGTGTGAGAACAGGGAATCTTGAGACCTGTCTGAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 8 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000131993.8
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS GCA 72 bp GAAGCCACTAGGGCGCTTTTGACCTCCATAAATTCCTaGACAGTGACTGGTCCATCTGACAAATCTGAATCT +
Preference number: 6 (lower is better)
Translates to: EATRALLTSINS*TVTGPSDKSES
Trigger: AGATTCAGATTTGTCAGATGGACCAGTCACTGTGCAGGAATTTATGGAGGTCAAAAGCGCCCTAGTGGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000086564.11
ENSMUST00000130925.2
ENSMUST00000155908.8
CDS CAA 72 bp AGCAGAGAGTGTTCCCATATAGAGTTAGCACCATTGTaGTACAAGGTCTCAACCATCTGGAGCAGGGTTGGA +
Preference number: 6 (lower is better)
Translates to: SRECSHIELAPL*YKVSTIWSRVG
Trigger: TCCAACCCTGCTCCAGATGGTTGAGACCTTGTACAACAATGGTGCTAACTCTATATGGGAACACTCTCTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000112183.8
ENSMUST00000112185.9
ENSMUST00000131016.2
ENSMUST00000155908.8
ENSMUST00000178440.8
CDS CAA 90 bp CAAACAAATGATTACTCAGAGATTGAAGTTTCTTCTTCGCAGCTTTaGCCAACTCAGACAAATCCAGGAGCCGTCTGTCTGCCCTCTGAG +
Preference number: 6 (lower is better)
Translates to: QTNDYSEIEVSSSQL*PTQTNPGAVCLPSE
Trigger: CTCAGAGGGCAGACAGACGGCTCCTGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCATTTGTTTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131993.8
CDS CAA 90 bp CAAACAAATGATTACTCAGAGATTGAAGTTTCTTCTTCGCAGCTTTaGCCAACTCAGACAAATCCAGGCTGCTGTCTGCCCTCTGAGGAA +
Preference number: 6 (lower is better)
Translates to: QTNDYSEIEVSSSQL*PTQTNPGCCLPSEE
Trigger: TTCCTCAGAGGGCAGACAGCAGCCTGGATTTGTCTGAGTTGGCAAAAGCTGCGAAGAAGAAACTTCAATCTCTGAGTAATCATTTGTTTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000043283.14
ENSMUST00000086564.11
ENSMUST00000155908.8
CDS CAA 72 bp AGCTTTTTCTGCATAATTCTCAGCTCGTCACTCAAGTaGTTATTCACCTTCATTAGCTGCTGTCTCTTGGCC +
Preference number: 6 (lower is better)
Translates to: SFFCIILSSSLK*LFTFISCCLLA
Trigger: GGCCAAGAGACAGCAGCTAATGAAGGTGAATAACAACTTGAGTGACGAGCTGAGAATTATGCAGAAAAAGCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000086564.11
ENSMUST00000146044.8