Pregenerated sensors for GINS4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031546Ensembl transcript IDs: ENSMUST00000033950.7
Found 34 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GTTGATTTATTTGCTGAGTATTCAGAGCACGGGCCCATCTGTTGGTaGTGGTTAAACAGGAATTTAGGAGAAGGCTGTGACAACGAAGGG | + |
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Preference number: 1 (lower is better) Translates to: VDLFAEYSEHGPICW*WLNRNLGEGCDNEG Trigger: CCCTTCGTTGTCACAGCCTTCTCCTAAATTCCTGTTTAACCAGCACCAACAGATGGGCCCGTGCTCTGAATACTCAGCAAATAAATCAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| 3UTR GCA 72 bp | TTTGCTGAGTATTCAGAGCACGGGCCCATCTGTTGGTaGTGGTTAAACAGGAATTTAGGAGAAGGCTGTGAC | + |
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Preference number: 3 (lower is better) Translates to: FAEYSEHGPICW*WLNRNLGEGCD Trigger: GTCACAGCCTTCTCCTAAATTCCTGTTTAACCAGCACCAACAGATGGGCCCGTGCTCTGAATACTCAGCAAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| 3UTR CCA 72 bp | TTATTTGCTGAGTATTCAGAGCACGGGCCCATCTGTTaGTGCTGGTTAAACAGGAATTTAGGAGAAGGCTGT | + |
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Preference number: 3 (lower is better) Translates to: LFAEYSEHGPIC*CWLNRNLGEGC Trigger: ACAGCCTTCTCCTAAATTCCTGTTTAACCAGCACCAACAGATGGGCCCGTGCTCTGAATACTCAGCAAATAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR GCA 90 bp | ATCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCTCAAGAGGTCCACCTTCTaGAGGTTGGGAGGCATGTGC | + |
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Preference number: 4 (lower is better) Translates to: IWPSWAGQGSLFETPPELKRSTF*RLGGMC Trigger: GCACATGCCTCCCAACCTGCAGAAGGTGGACCTCTT...GAGCTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR TCA 90 bp | TCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCTCAGCTCCAGCTTTTCAATaGGCTCTGCAGGAGTTAGGA | + |
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Preference number: 4 (lower is better) Translates to: SGRRGQGREASSRPLLSSAPAFQ*ALQELG Trigger: TCCTAACTCCTGCAGAGCTCATTGAAAAGCTGGAGC...TGAGCTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR TCA 90 bp | ATCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCTCGCTCAAGCTGTTCCATaGCGCATTCGACAATCTCAG | + |
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Preference number: 4 (lower is better) Translates to: IWPSWAGQGSLFETPPELAQAVP*RIRQSQ Trigger: CTGAGATTGTCGAATGCGTCATGGAACAGCTTGAGC...GAGCTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR CCA 90 bp | TCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCTCATCCATCTCCATGCGATaGATGCTGACCTTCAGATCC | + |
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Preference number: 4 (lower is better) Translates to: SGRRGQGREASSRPLLSSSISMR*MLTFRS Trigger: GGATCTGAAGGTCAGCATCCATCGCATGGAGATGGA...TGAGCTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR CCA 90 bp | CAGTCCATCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTAAAGACAAACTCCTCTaGAGACAGGCTGGAAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: QSIWPSWAGQGSLFETPPKDKLL*RQAGRL Trigger: GAGCCTTCCAGCCTGTCTCCAGAGGAGTTTGTCTTT...AGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGATGGACTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR GCA 90 bp | CAGTCCATCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTTCATTCATCCAGGCCTaGTCCAGCTTTTCAATGAGC | + |
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Preference number: 4 (lower is better) Translates to: QSIWPSWAGQGSLFETPPSFIQA*SSFSMS Trigger: GCTCATTGAAAAGCTGGAGCAGGCCTGGATGAATGA...AGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGATGGACTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR CCA 90 bp | ATCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCTCAATCTAGGTCTGGTTTaGGAACTGCCCTCAAGAGGT | + |
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Preference number: 4 (lower is better) Translates to: IWPSWAGQGSLFETPPELNLGLV*ELPSRG Trigger: ACCTCTTGAGGGCAGTTCCCAAACCAGACCTAGATT...GAGCTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR TCA 90 bp | CAGTCCATCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTCCTTCTTGGCTCTTCTaGGATTTTCTTCCATGTGCT | + |
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Preference number: 4 (lower is better) Translates to: QSIWPSWAGQGSLFETPPPSWLF*DFLPCA Trigger: AGCACATGGAAGAAAATCTCAGAAGAGCCAAGAAGG...AGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGATGGACTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR GCA 90 bp | GGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCTCAGTAAGTAGTAGACGACAATCTCAGCCTTaGTTTCCAGGAGCTCAGGGG | + |
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Preference number: 4 (lower is better) Translates to: GQGREASSRPLLSSVSSRRQSQP*FPGAQG Trigger: CCCCTGAGCTCCTGGAAAGCAAGGCTGAGATTGTCG...TCTACTACTTACTGAGCTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR GCA 90 bp | TCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCTCAAGGTTGGGAGGCATGTaGTTTAAGGCAACGTTTTTA | + |
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Preference number: 4 (lower is better) Translates to: SGRRGQGREASSRPLLSSRLGGM*FKATFL Trigger: TAAAAACGTTGCCTTAAAGCACATGCCTCCCAACCT...TGAGCTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR CCA 90 bp | CCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCTCAGTAAGGCAACGTTTTTAAAGTaGGTCTCCGTGTGGTCCATA | + |
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Preference number: 4 (lower is better) Translates to: PSWAGQGSLFETPPELSKATFLK*VSVWSI Trigger: TATGGACCACACGGAGACCCACTTTAAAAACGTTGC...CTTACTGAGCTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR CCA 90 bp | GGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCTCAGTAAGTAGTAGACCACCTTCTGCAGGTTaGGAGGCATGTGCTTTAAGG | + |
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Preference number: 4 (lower is better) Translates to: GQGREASSRPLLSSVSSRPPSAG*EACALR Trigger: CCTTAAAGCACATGCCTCCCAACCTGCAGAAGGTGG...TCTACTACTTACTGAGCTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR CCA 90 bp | TCCATCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCAACAAGAGGTGCGATaGTTTTGTATCGGATCAAGT | + |
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Preference number: 4 (lower is better) Translates to: SIWPSWAGQGSLFETPPEQQEVR*FCIGSS Trigger: ACTTGATCCGATACAAAACCATCGCACCTCTTGTTG...CTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGATGGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR GCA 90 bp | CGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCTCAGTAAGTAGAAGCAACAAGAGGTaGGATGGTTTTGTATCGGAT | + |
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Preference number: 4 (lower is better) Translates to: RRGQGREASSRPLLSSVSRSNKR*DGFVSD Trigger: ATCCGATACAAAACCATCGCACCTCTTGTTGCTTCT...ACTTACTGAGCTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR GCA 90 bp | ACATTGCTGACGAACTGTATGGAACATGACTTCACTATTAGACACAAAAGATGGAAGGCTCCCCCTCACTaGGCACTTTCTCCTTTTCTA | + |
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Preference number: 4 (lower is better) Translates to: TLLTNCMEHDFTIRHKRWKAPPH*ALSPFL Trigger: TAGAAAAGGAGAAAGTGCGCAGTGAGGGGGAGCCTT...CCATCTTTTGTGTCTAATAGTGAAGTCATGTTCCATACAGTTCGTCAGCAATGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR TCA 90 bp | GTATGGAACATGACTTCACTATTAGACACAAAAGATGGCGTTTCTAATATTGTCACCGCAAATAGCTGCTaGGGACATAGCGGATCCTCT | + |
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Preference number: 4 (lower is better) Translates to: VWNMTSLLDTKDGVSNIVTANSC*GHSGSS Trigger: AGAGGATCCGCTATGTCCTCAGCAGCTATTTGCGGT...GACAATATTAGAAACGCCATCTTTTGTGTCTAATAGTGAAGTCATGTTCCATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR TCA 90 bp | GTATGGAACATGACTTCACTATTAGACACAAAAGATGGCGTTTCTAATATTGTCTCGGATCAAGTGCTGTaGGCCCACCTCCAAGTCAAT | + |
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Preference number: 4 (lower is better) Translates to: VWNMTSLLDTKDGVSNIVSDQVL*AHLQVN Trigger: ATTGACTTGGAGGTGGGCTCACAGCACTTGATCCGA...GACAATATTAGAAACGCCATCTTTTGTGTCTAATAGTGAAGTCATGTTCCATAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR GCA 90 bp | CACACATTGCTGACGAACTGTATGGAACATGACTTCACTATTAGACACAAAAGAAGATTTTCTTCCATGTaGTCAAGCTGTTCCATGACG | + |
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Preference number: 4 (lower is better) Translates to: HTLLTNCMEHDFTIRHKRRFSSM*SSCSMT Trigger: CGTCATGGAACAGCTTGAGCACATGGAAGAAAATCT...TCTTTTGTGTCTAATAGTGAAGTCATGTTCCATACAGTTCGTCAGCAATGTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR CCA 90 bp | ACATTGCTGACGAACTGTATGGAACATGACTTCACTATTAGACACAAAAGATGGGGTCCATATACTCTTTaGCAAAGACAAACTCCTCTG | + |
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Preference number: 4 (lower is better) Translates to: TLLTNCMEHDFTIRHKRWGPYTL*QRQTPL Trigger: CAGAGGAGTTTGTCTTTGCCAAAGAGTATATGGACC...CCATCTTTTGTGTCTAATAGTGAAGTCATGTTCCATACAGTTCGTCAGCAATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR CAA 90 bp | CAGTCCATCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTTCCACCTTCTGCAGGTaGGGAGGCATGTGCTTTAAG | + |
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Preference number: 5 (lower is better) Translates to: QSIWPSWAGQGSLFETPPSTFCR*GGMCFK Trigger: CTTAAAGCACATGCCTCCCAACCTGCAGAAGGTGGA...AGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGATGGACTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR CAA 90 bp | ATCTGGCCGTCGTGGGCAGGGCAGGGAAGCCTCTTCGAGACCCCTCCTGAGCTCAGAGGTGCGATGGTTTaGTATCGGATCAAGTGCTGT | + |
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Preference number: 5 (lower is better) Translates to: IWPSWAGQGSLFETPPELRGAMV*YRIKCC Trigger: ACAGCACTTGATCCGATACAAAACCATCGCACCTCT...GAGCTCAGGAGGGGTCTCGAAGAGGCTTCCCTGCCCTGCCCACGACGGCCAGAT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS TCA 90 bp | AGAAGCAACAAGAGGTGCGATGGTTTTGTATCGGATCAAGTGCTGTaGGCCCACCTCCAAGTCAATCACGTAGTCTCTCTGCTCATCGGC | + |
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Preference number: 5 (lower is better) Translates to: RSNKRCDGFVSDQVL*AHLQVNHVVSLLIG Trigger: GCCGATGAGCAGAGAGACTACGTGATTGACTTGGAGGTGGGCTCACAGCACTTGATCCGATACAAAACCATCGCACCTCTTGTTGCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR CAA 90 bp | ACATTGCTGACGAACTGTATGGAACATGACTTCACTATTAGACACAAAAGATGGTCGACAATCTCAGCCTaGCTTTCCAGGAGCTCAGGG | + |
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Preference number: 5 (lower is better) Translates to: TLLTNCMEHDFTIRHKRWSTISA*LSRSSG Trigger: CCCTGAGCTCCTGGAAAGCAAGGCTGAGATTGTCGA...CCATCTTTTGTGTCTAATAGTGAAGTCATGTTCCATACAGTTCGTCAGCAATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS-3UTR CAA 90 bp | GATGGCGTTTCTAATATTGTCTGTGACCACTCCATGTCCTCAGGCTTGCTTTGTTTCAGATCCCCCTTCTaGGCTCTTCTGAGATTTTCT | + |
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Preference number: 5 (lower is better) Translates to: DGVSNIVCDHSMSSGLLCFRSPF*ALLRFS Trigger: AGAAAATCTCAGAAGAGCCAAGAAGGGGGATCTGAA...ACAAAGCAAGCCTGAGGACATGGAGTGGTCACAGACAATATTAGAAACGCCATC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS GCA 72 bp | TCTGGTTTGGGAACTGCCCTCAAGAGGTCCACCTTCTaGAGGTTGGGAGGCATGTGCTTTAAGGCAACGTTT | + |
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Preference number: 6 (lower is better) Translates to: SGLGTALKRSTF*RLGGMCFKATF Trigger: AAACGTTGCCTTAAAGCACATGCCTCCCAACCTGCAGAAGGTGGACCTCTTGAGGGCAGTTCCCAAACCAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS CAA 90 bp | TCCATGTGCTCAAGCTGTTCCATGACGCATTCGACAATCTCAGCCTaGCTTTCCAGGAGCTCAGGGGCAAACTTTTCATTCATCCAGGCC | + |
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Preference number: 6 (lower is better) Translates to: SMCSSCSMTHSTISA*LSRSSGANFSFIQA Trigger: GGCCTGGATGAATGAAAAGTTTGCCCCTGAGCTCCTGGAAAGCAAGGCTGAGATTGTCGAATGCGTCATGGAACAGCTTGAGCACATGGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS CAA 72 bp | TTCACTCGCAGAAACACGTATGAATCTAGGTCTGGTTaGGGAACTGCCCTCAAGAGGTCCACCTTCTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: FTRRNTYESRSG*GTALKRSTFCR Trigger: CCTGCAGAAGGTGGACCTCTTGAGGGCAGTTCCCAAACCAGACCTAGATTCATACGTGTTTCTGCGAGTGAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS CAA 72 bp | TCCATGCGATGGATGCTGACCTTCAGATCCCCCTTCTaGGCTCTTCTGAGATTTTCTTCCATGTGCTCAAGC | + |
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Preference number: 6 (lower is better) Translates to: SMRWMLTFRSPF*ALLRFSSMCSS Trigger: GCTTGAGCACATGGAAGAAAATCTCAGAAGAGCCAAGAAGGGGGATCTGAAGGTCAGCATCCATCGCATGGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS TCA 72 bp | ACTTTTCATTCATCCAGGCCTGCTCCAGCTTTTCAATaGGCTCTGCAGGAGTTAGGACCATCTCCTCACTAC | + |
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Preference number: 6 (lower is better) Translates to: TFHSSRPAPAFQ*ALQELGPSPHY Trigger: GTAGTGAGGAGATGGTCCTAACTCCTGCAGAGCTCATTGAAAAGCTGGAGCAGGCCTGGATGAATGAAAAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS CAA 72 bp | TTTTTAAAGTGGGTCTCCGTGTGGTCCATATACTCTTaGGCAAAGACAAACTCCTCTGGAGACAGGCTGGAA | + |
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Preference number: 6 (lower is better) Translates to: FLKWVSVWSIYS*AKTNSSGDRLE Trigger: TTCCAGCCTGTCTCCAGAGGAGTTTGTCTTTGCCAAAGAGTATATGGACCACACGGAGACCCACTTTAAAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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| CDS CCA 72 bp | TGCTTTAAGGCAACGTTTTTAAAGTGGGTCTCCGTGTaGTCCATATACTCTTTGGCAAAGACAAACTCCTCT | + |
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Preference number: 6 (lower is better) Translates to: CFKATFLKWVSV*SIYSLAKTNSS Trigger: AGAGGAGTTTGTCTTTGCCAAAGAGTATATGGACCACACGGAGACCCACTTTAAAAACGTTGCCTTAAAGCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033950.7 |
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