Pregenerated sensors for GINS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027454Ensembl transcript IDs: ENSMUST00000028948.5
Found 27 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GATGAAACTCTGGGTTTCTCAAATCCTAAGCAGGTGCTCTACCAATaGGCTGGACCCCAGCCCATCTTGGTTATGTTAATGCATGTCTGT | + |
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Preference number: 1 (lower is better) Translates to: DETLGFSNPKQVLYQ*AGPQPILVMLMHVC Trigger: ACAGACATGCATTAACATAACCAAGATGGGCTGGGGTCCAGCTCATTGGTAGAGCACCTGCTTAGGATTTGAGAAACCCAGAGTTTCATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| 3UTR-3UTR TCA 90 bp | AATGGAATAACTAGAGATATAACCTGTAACAAAGGCTTAAGAGCTGGCAGCTTACAGGTGCTCTACCAATaGGCTGGACCCCAGCCCATC | + |
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Preference number: 2 (lower is better) Translates to: NGITRDITCNKGLRAGSLQVLYQ*AGPQPI Trigger: GATGGGCTGGGGTCCAGCTCATTGGTAGAGCACCTG...TAAGCTGCCAGCTCTTAAGCCTTTGTTACAGGTTATATCTCTAGTTATTCCATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| 3UTR CCA 72 bp | GGGGGAGGTCCAGTGAGGACGTTTCCTTCTGTGAGTTaGCTTAGCTTCACATCCAGCTGCTGTCACCACAGG | + |
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Preference number: 3 (lower is better) Translates to: GGGPVRTFPSVS*LSFTSSCCHHR Trigger: CCTGTGGTGACAGCAGCTGGATGTGAAGCTAAGCCAACTCACAGAAGGAAACGTCCTCACTGGACCTCCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| 3UTR GCA 72 bp | GGGATGAAACTCTGGGTTTCTCAAATCCTAAGCAGGTaGTCTACCAATGAGCTGGACCCCAGCCCATCTTGG | + |
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Preference number: 3 (lower is better) Translates to: GMKLWVSQILSR*STNELDPSPSW Trigger: CCAAGATGGGCTGGGGTCCAGCTCATTGGTAGAGCACCTGCTTAGGATTTGAGAAACCCAGAGTTTCATCCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| 3UTR TCA 72 bp | CTGGGTTTCTCAAATCCTAAGCAGGTGCTCTACCAATaGGCTGGACCCCAGCCCATCTTGGTTATGTTAATG | + |
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Preference number: 3 (lower is better) Translates to: LGFSNPKQVLYQ*AGPQPILVMLM Trigger: CATTAACATAACCAAGATGGGCTGGGGTCCAGCTCATTGGTAGAGCACCTGCTTAGGATTTGAGAAACCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS-3UTR TCA 90 bp | GGTGCTCTACCAATGAGCTGGACCCCAGCCCATCTTGGTTATGTTAATGCATGTCTTTTTAAGCAGGACTaGAGTGCCATCATCAACTTC | + |
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Preference number: 4 (lower is better) Translates to: GALPMSWTPAHLGYVNACLFKQD*SAIINF Trigger: GAAGTTGATGATGGCACTTCAGTCCTGCTTAAAAAG...ACATGCATTAACATAACCAAGATGGGCTGGGGTCCAGCTCATTGGTAGAGCACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS-3UTR GCA 90 bp | TTGATTTTTGTTGTCTTGTTTCTTGAGGTACTAGGGATGAAACTCTGGGTTTCTATATTCCCACCTGAGTaGTCTAATCCGAAGCAACCG | + |
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Preference number: 4 (lower is better) Translates to: LIFVVLFLEVLGMKLWVSIFPPE*SNPKQP Trigger: CGGTTGCTTCGGATTAGAGCACTCAGGTGGGAATAT...AGAAACCCAGAGTTTCATCCCTAGTACCTCAAGAAACAAGACAACAAAAATCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS-3UTR GCA 90 bp | GTACAATATTACTGTGGGAATGGAATAACTAGAGATATAACCTGTAACAAAGGCCCTTGTCTGATTAACTaGTCACACTTCCACCGAGGC | + |
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Preference number: 4 (lower is better) Translates to: VQYYCGNGITRDITCNKGPCLIN*SHFHRG Trigger: GCCTCGGTGGAAGTGTGAGCAGTTAATCAGACAAGG...GCCTTTGTTACAGGTTATATCTCTAGTTATTCCATTCCCACAGTAATATTGTAC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS-3UTR TCA 90 bp | TCTTTGATTTTTGTTGTCTTGTTTCTTGAGGTACTAGGGATGAAACTCTGGGTTCGAGGCAAAAAGTGCTaGCTATTCTTTTTAAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: SLIFVVLFLEVLGMKLWVRGKKC*LFFLSR Trigger: CCTGCTTAAAAAGAATAGTCAGCACTTTTTGCCTCG...AACCCAGAGTTTCATCCCTAGTACCTCAAGAAACAAGACAACAAAAATCAAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS-3UTR TCA 90 bp | GTACAATATTACTGTGGGAATGGAATAACTAGAGATATAACCTGTAACAAAGGCCTAGAACTCCTTGTCTaGTTAACTGCTCACACTTCC | + |
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Preference number: 4 (lower is better) Translates to: VQYYCGNGITRDITCNKGLELLV*LTAHTS Trigger: GGAAGTGTGAGCAGTTAATCAGACAAGGAGTTCTAG...GCCTTTGTTACAGGTTATATCTCTAGTTATTCCATTCCCACAGTAATATTGTAC 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS-3UTR CCA 90 bp | TCTTTGATTTTTGTTGTCTTGTTTCTTGAGGTACTAGGGATGAAACTCTGGGTTCAATATATAGGCTTTTaGGGGGCTTCACATCTTGTG | + |
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Preference number: 4 (lower is better) Translates to: SLIFVVLFLEVLGMKLWVQYIGF*GASHLV Trigger: CACAAGATGTGAAGCCCCCCAAAAGCCTATATATTG...AACCCAGAGTTTCATCCCTAGTACCTCAAGAAACAAGACAACAAAAATCAAAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS-3UTR GCA 90 bp | GTACAATATTACTGTGGGAATGGAATAACTAGAGATATAACCTGTAACAAAGGCACAGGTATGCTATCGTaGAGCGTCTATTTCTTAACA | + |
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Preference number: 4 (lower is better) Translates to: VQYYCGNGITRDITCNKGTGMLS*SVYFLT Trigger: TGTTAAGAAATAGACGCTGCACGATAGCATACCTGT...GCCTTTGTTACAGGTTATATCTCTAGTTATTCCATTCCCACAGTAATATTGTAC 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS GCA 90 bp | TCCTCCAGAACTTGTCTGAGTCCGTCCTCATTAAAGGCCGGCAGCTaGCCTTCCGGCGCGCGGTGTAACTCGCGGACAAGCTCCATAGCT | + |
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Preference number: 5 (lower is better) Translates to: SSRTCLSPSSLKAGS*PSGARCNSRTSSIA Trigger: AGCTATGGAGCTTGTCCGCGAGTTACACCGCGCGCCGGAAGGGCAGCTGCCGGCCTTTAATGAGGACGGACTCAGACAAGTTCTGGAGGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS TCA 90 bp | CTATCGTGCAGCGTCTATTTCTTAACAAAGCACAGTGCCGAAATTTaGCGGTTGGTATCAGATCCCCTCGTCCAGCTGACTTGGCTTCAT | + |
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Preference number: 5 (lower is better) Translates to: LSCSVYFLTKHSAEI*RLVSDPLVQLTWLH Trigger: ATGAAGCCAAGTCAGCTGGACGAGGGGATCTGATACCAACCGTCAAATTTCGGCACTGTGCTTTGTTAAGAAATAGACGCTGCACGATAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS GCA 90 bp | TACAGGTATGCTATCGTGCAGCGTCTATTTCTTAACAAAGCACAGTaGCGAAATTTGACGGTTGGTATCAGATCCCCTCGTCCAGCTGAC | + |
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Preference number: 5 (lower is better) Translates to: YRYAIVQRLFLNKAQ*RNLTVGIRSPRPAD Trigger: GTCAGCTGGACGAGGGGATCTGATACCAACCGTCAAATTTCGGCACTGTGCTTTGTTAAGAAATAGACGCTGCACGATAGCATACCTGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS TCA 90 bp | ACAGTGCCGAAATTTGACGGTTGGTATCAGATCCCCTCGTCCAGCTaGCTTGGCTTCATTCACATCAGACTGGTTTTGTTCATACAAAGC | + |
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Preference number: 5 (lower is better) Translates to: TVPKFDGWYQIPSSS*LGFIHIRLVLFIQS Trigger: GCTTTGTATGAACAAAACCAGTCTGATGTGAATGAAGCCAAGTCAGCTGGACGAGGGGATCTGATACCAACCGTCAAATTTCGGCACTGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS CCA 90 bp | ATCAGATCCCCTCGTCCAGCTGACTTGGCTTCATTCACATCAGACTaGTTTTGTTCATACAAAGCTTTCATCTCCTCCAGAACTTGTCTG | + |
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Preference number: 5 (lower is better) Translates to: IRSPRPADLASFTSD*FCSYKAFISSRTCL Trigger: CAGACAAGTTCTGGAGGAGATGAAAGCTTTGTATGAACAAAACCAGTCTGATGTGAATGAAGCCAAGTCAGCTGGACGAGGGGATCTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS-3UTR CAA 90 bp | TGTGGGAATGGAATAACTAGAGATATAACCTGTAACAAAGGCTTAAGAGCTGGCCATCTCCTCCAGAACTaGTCTGAGTCCGTCCTCATT | + |
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Preference number: 5 (lower is better) Translates to: CGNGITRDITCNKGLRAGHLLQN*SESVLI Trigger: AATGAGGACGGACTCAGACAAGTTCTGGAGGAGATG...GCCAGCTCTTAAGCCTTTGTTACAGGTTATATCTCTAGTTATTCCATTCCCACA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS-3UTR CAA 90 bp | AATGGAATAACTAGAGATATAACCTGTAACAAAGGCTTAAGAGCTGGCAGCTTACACATCAGACTGGTTTaGTTCATACAAAGCTTTCAT | + |
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Preference number: 5 (lower is better) Translates to: NGITRDITCNKGLRAGSLHIRLV*FIQSFH Trigger: ATGAAAGCTTTGTATGAACAAAACCAGTCTGATGTG...TAAGCTGCCAGCTCTTAAGCCTTTGTTACAGGTTATATCTCTAGTTATTCCATT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS CAA 90 bp | ATCAGACTGGTTTTGTTCATACAAAGCTTTCATCTCCTCCAGAACTaGTCTGAGTCCGTCCTCATTAAAGGCCGGCAGCTGCCCTTCCGG | + |
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Preference number: 6 (lower is better) Translates to: IRLVLFIQSFHLLQN*SESVLIKGRQLPFR Trigger: CCGGAAGGGCAGCTGCCGGCCTTTAATGAGGACGGACTCAGACAAGTTCTGGAGGAGATGAAAGCTTTGTATGAACAAAACCAGTCTGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS CAA 90 bp | GCTATCGTGCAGCGTCTATTTCTTAACAAAGCACAGTGCCGAAATTaGACGGTTGGTATCAGATCCCCTCGTCCAGCTGACTTGGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: AIVQRLFLNKAQCRN*TVGIRSPRPADLAS Trigger: TGAAGCCAAGTCAGCTGGACGAGGGGATCTGATACCAACCGTCAAATTTCGGCACTGTGCTTTGTTAAGAAATAGACGCTGCACGATAGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS CAA 72 bp | CAGCGTCTATTTCTTAACAAAGCACAGTGCCGAAATTaGACGGTTGGTATCAGATCCCCTCGTCCAGCTGAC | + |
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Preference number: 6 (lower is better) Translates to: QRLFLNKAQCRN*TVGIRSPRPAD Trigger: GTCAGCTGGACGAGGGGATCTGATACCAACCGTCAAATTTCGGCACTGTGCTTTGTTAAGAAATAGACGCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS TCA 72 bp | AGCGTCTATTTCTTAACAAAGCACAGTGCCGAAATTTaGCGGTTGGTATCAGATCCCCTCGTCCAGCTGACT | + |
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Preference number: 6 (lower is better) Translates to: SVYFLTKHSAEI*RLVSDPLVQLT Trigger: AGTCAGCTGGACGAGGGGATCTGATACCAACCGTCAAATTTCGGCACTGTGCTTTGTTAAGAAATAGACGCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS GCA 72 bp | GCTATCGTGCAGCGTCTATTTCTTAACAAAGCACAGTaGCGAAATTTGACGGTTGGTATCAGATCCCCTCGT | + |
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Preference number: 6 (lower is better) Translates to: AIVQRLFLNKAQ*RNLTVGIRSPR Trigger: ACGAGGGGATCTGATACCAACCGTCAAATTTCGGCACTGTGCTTTGTTAAGAAATAGACGCTGCACGATAGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS CAA 72 bp | TTGACGGTTGGTATCAGATCCCCTCGTCCAGCTGACTaGGCTTCATTCACATCAGACTGGTTTTGTTCATAC | + |
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Preference number: 6 (lower is better) Translates to: LTVGIRSPRPAD*ASFTSDWFCSY Trigger: GTATGAACAAAACCAGTCTGATGTGAATGAAGCCAAGTCAGCTGGACGAGGGGATCTGATACCAACCGTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS CAA 90 bp | TGCCGAAATTTGACGGTTGGTATCAGATCCCCTCGTCCAGCTGACTaGGCTTCATTCACATCAGACTGGTTTTGTTCATACAAAGCTTTC | + |
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Preference number: 6 (lower is better) Translates to: CRNLTVGIRSPRPAD*ASFTSDWFCSYKAF Trigger: GAAAGCTTTGTATGAACAAAACCAGTCTGATGTGAATGAAGCCAAGTCAGCTGGACGAGGGGATCTGATACCAACCGTCAAATTTCGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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| CDS TCA 72 bp | AAATTTGACGGTTGGTATCAGATCCCCTCGTCCAGCTaGCTTGGCTTCATTCACATCAGACTGGTTTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: KFDGWYQIPSSS*LGFIHIRLVLF Trigger: GAACAAAACCAGTCTGATGTGAATGAAGCCAAGTCAGCTGGACGAGGGGATCTGATACCAACCGTCAAATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028948.5 |
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