Pregenerated sensors for GIMD1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000091721Ensembl transcript IDs: ENSMUST00000163241.4, ENSMUST00000196701.2, ENSMUST00000212594.2, ENSMUST00000212804.2, ENSMUST00000212852.2
Found 80 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | TACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGCACTGCTATGACAGCTaGTTGAGCTTGTTCACCCTC | + |
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Preference number: 2 (lower is better) Translates to: YPTASFCFADTQHFFTPEHCYDS*LSLFTL Trigger: GAGGGTGAACAAGCTCAATCAGCTGTCATAGCAGTG...CTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR-3UTR TCA 90 bp | CCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGTAGTCACTGCTATGACAGCTaGTTGAGCTTGTTCACCCTC | + |
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Preference number: 2 (lower is better) Translates to: PQHPFALLIPSTSSHQSSHCYDS*LSLFTL Trigger: GAGGGTGAACAAGCTCAATCAGCTGTCATAGCAGTG...ACTACTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR-3UTR TCA 90 bp | CATCCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCCACTGCTATGACAGCTaGTTGAGCTTGTTCACCCTC | + |
|
Preference number: 2 (lower is better) Translates to: HPVKPASRSGTSLTNISAHCYDS*LSLFTL Trigger: GAGGGTGAACAAGCTCAATCAGCTGTCATAGCAGTG...GGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR-3UTR TCA 90 bp | AAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTACCCCAATCCTTTTGCTTTGCTaGTACCCAGCACTTCTTCAC | + |
|
Preference number: 2 (lower is better) Translates to: KPASRSGTSLTNISAVTPILLLC*YPALLH Trigger: GTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGAT...TGGGGTAACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR-3UTR TCA 90 bp | TACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGGGTTGCATTAGTCTTTaGCTGTTGCTGACCTTTCTA | + |
|
Preference number: 2 (lower is better) Translates to: YPTASFCFADTQHFFTPEGCISL*LLLTFL Trigger: TAGAAAGGTCAGCAACAGTCAAAGACTAATGCAACC...CTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR-3UTR TCA 90 bp | GTTACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGGGTTGCATTAGTCTTTaGCTGTTGCTGACCTTTCTA | + |
|
Preference number: 2 (lower is better) Translates to: VTPQHPFALLIPSTSSHQGCISL*LLLTFL Trigger: TAGAAAGGTCAGCAACAGTCAAAGACTAATGCAACC...CTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR-3UTR TCA 90 bp | CCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTATCCTTTTGCTTTGCTaGTACCCAGCACTTCTTCAC | + |
|
Preference number: 2 (lower is better) Translates to: PVKPASRSGTSLTNISAVILLLC*YPALLH Trigger: GTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGAT...AACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR-3UTR CCA 90 bp | CCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGTAGTACCCTGATTAATACCTaGAGCTCTCTTCTCCTCACT | + |
|
Preference number: 2 (lower is better) Translates to: PQHPFALLIPSTSSHQSSTLINT*SSLLLT Trigger: AGTGAGGAGAAGAGAGCTCCAGGTATTAATCAGGGT...ACTACTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR-3UTR CCA 90 bp | CCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTACCCTGATTAATACCTaGAGCTCTCTTCTCCTCACT | + |
|
Preference number: 2 (lower is better) Translates to: PVKPASRSGTSLTNISAVTLINT*SSLLLT Trigger: AGTGAGGAGAAGAGAGCTCCAGGTATTAATCAGGGT...AACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR-3UTR CCA 90 bp | AAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTACCCCATTTGACTCTGATGAATaGTACCACCGTGAGCATTCT | + |
|
Preference number: 2 (lower is better) Translates to: KPASRSGTSLTNISAVTPFDSDE*YHREHS Trigger: AGAATGCTCACGGTGGTACCATTCATCAGAGTCAAA...TGGGGTAACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR-3UTR CCA 90 bp | GTTACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGTTTGACTCTGATGAATaGTACCACCGTGAGCATTCT | + |
|
Preference number: 2 (lower is better) Translates to: VTPQHPFALLIPSTSSHQFDSDE*YHREHS Trigger: AGAATGCTCACGGTGGTACCATTCATCAGAGTCAAA...CTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR-3UTR CCA 90 bp | CATCTCTGCCGTTACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCAGCGAGTTTTATGTCTaGCTTCTTTCTCTTAGTGTT | + |
|
Preference number: 2 (lower is better) Translates to: HLCRYPTASFCFADTQHFSEFYV*LLSLSV Trigger: AACACTAAGAGAAAGAAGCCAGACATAAAACTCGCT...GAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTAACGGCAGAGATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR TCA 72 bp | TCTCTGCCGTTACCCCACAGCATCCTTTTGCTTTGCTaGTACCCAGCACTTCTTCACACCAGAGTAGTTAGG | + |
|
Preference number: 3 (lower is better) Translates to: SLPLPHSILLLC*YPALLHTRVVR Trigger: CCTAACTACTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTAACGGCAGAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR GCA 72 bp | TACGAACATCTCTGCCGTTACCCCACAGCATCCTTTTaGTTTGCTGATACCCAGCACTTCTTCACACCAGAG | + |
|
Preference number: 3 (lower is better) Translates to: YEHLCRYPTASF*FADTQHFFTPE Trigger: CTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTAACGGCAGAGATGTTCGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR GCA 72 bp | TCTGATGAATGGTACCACCGTGAGCATTCTTGTATATaGATGTTTCTAATTGCACAAATGAACACTTTTCTG | + |
|
Preference number: 3 (lower is better) Translates to: SDEWYHREHSCI*MFLIAQMNTFL Trigger: CAGAAAAGTGTTCATTTGTGCAATTAGAAACATGCATATACAAGAATGCTCACGGTGGTACCATTCATCAGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR CCA 72 bp | TTTCTACAAATGGAGTCATTGAGCGAGTTTTATGTCTaGCTTCTTTCTCTTAGTGTTGTACTTAGATGGTTG | + |
|
Preference number: 3 (lower is better) Translates to: FLQMESLSEFYV*LLSLSVVLRWL Trigger: CAACCATCTAAGTACAACACTAAGAGAAAGAAGCCAGACATAAAACTCGCTCAATGACTCCATTTGTAGAAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS-3UTR TCA 90 bp | TACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGGTCCCCCTCGACGCATaGAGCCATGGAGGTGACAGC | + |
|
Preference number: 4 (lower is better) Translates to: YPTASFCFADTQHFFTPEVPLDA*SHGGDS Trigger: GCTGTCACCTCCATGGCTTCATGCGTCGAGGGGGAC...CTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR TCA 90 bp | CCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGTAGTATGAAGCCATGGAGGTaGCAGCTGCGGCCCAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: PQHPFALLIPSTSSHQSSMKPWR*QLRPRL Trigger: CAGCCTGGGCCGCAGCTGTCACCTCCATGGCTTCAT...ACTACTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR TCA 90 bp | CATCCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCATGAAGCCATGGAGGTaGCAGCTGCGGCCCAGGCTG | + |
|
Preference number: 4 (lower is better) Translates to: HPVKPASRSGTSLTNISAMKPWR*QLRPRL Trigger: CAGCCTGGGCCGCAGCTGTCACCTCCATGGCTTCAT...GGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGGATG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR TCA 90 bp | CATCCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTCCCCCTCGACGCATaGAGCCATGGAGGTGACAGC | + |
|
Preference number: 4 (lower is better) Translates to: HPVKPASRSGTSLTNISAVPLDA*SHGGDS Trigger: GCTGTCACCTCCATGGCTTCATGCGTCGAGGGGGAC...GGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGGATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR GCA 90 bp | AAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTACCCCAAGCTGCGGCCCAGGCTaGACTCTTTGGTTACGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: KPASRSGTSLTNISAVTPSCGPG*TLWLRS Trigger: GCTCCGTAACCAAAGAGTGCAGCCTGGGCCGCAGCT...TGGGGTAACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR GCA 90 bp | GTTACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGCTGCGGCCCAGGCTaGACTCTTTGGTTACGGAGC | + |
|
Preference number: 4 (lower is better) Translates to: VTPQHPFALLIPSTSSHQSCGPG*TLWLRS Trigger: GCTCCGTAACCAAAGAGTGCAGCCTGGGCCGCAGCT...CTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR TCA 90 bp | AAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTACCCCAGAGCTTTTCCCACTCTaGGTCCTGCCAAAGACAGCC | + |
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Preference number: 4 (lower is better) Translates to: KPASRSGTSLTNISAVTPELFPL*VLPKTA Trigger: GGCTGTCTTTGGCAGGACTCAGAGTGGGAAAAGCTC...TGGGGTAACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR TCA 90 bp | CATCCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGAGCTTTTCCCACTCTaGGTCCTGCCAAAGACAGCC | + |
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Preference number: 4 (lower is better) Translates to: HPVKPASRSGTSLTNISAELFPL*VLPKTA Trigger: GGCTGTCTTTGGCAGGACTCAGAGTGGGAAAAGCTC...GGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR TCA 90 bp | CCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTGAGCTTTTCCCACTCTaGGTCCTGCCAAAGACAGCC | + |
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Preference number: 4 (lower is better) Translates to: PVKPASRSGTSLTNISAVELFPL*VLPKTA Trigger: GGCTGTCTTTGGCAGGACTCAGAGTGGGAAAAGCTC...AACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR GCA 90 bp | CATCTCTGCCGTTACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCCTCTTCACTCAACCCTaGCTCTTCGAGTTCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: HLCRYPTASFCFADTQHFLFTQP*LFEFFC Trigger: GCAGAAGAACTCGAAGAGGCAGGGTTGAGTGAAGAG...GAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTAACGGCAGAGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS-3UTR TCA 90 bp | TACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGTCCAGTACCTGTATCTaGAGGCTGATCTCTTGTCCC | + |
|
Preference number: 4 (lower is better) Translates to: YPTASFCFADTQHFFTPESSTCI*RLISCP Trigger: GGGACAAGAGATCAGCCTTCAGATACAGGTACTGGA...CTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CCA 90 bp | GTTACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGGCTGTGTGGATACCCTaGAGTGTCCAGTACCTGTAT | + |
|
Preference number: 4 (lower is better) Translates to: VTPQHPFALLIPSTSSHQAVWIP*SVQYLY Trigger: ATACAGGTACTGGACACTCCAGGGTATCCACACAGC...CTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CCA 90 bp | AAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTACCCCAGCTGTGTGGATACCCTaGAGTGTCCAGTACCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: KPASRSGTSLTNISAVTPAVWIP*SVQYLY Trigger: ATACAGGTACTGGACACTCCAGGGTATCCACACAGC...TGGGGTAACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR TCA 90 bp | CCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGTAGTTCCAGTACCTGTATCTaGAGGCTGATCTCTTGTCCC | + |
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Preference number: 4 (lower is better) Translates to: PQHPFALLIPSTSSHQSSSSTCI*RLISCP Trigger: GGGACAAGAGATCAGCCTTCAGATACAGGTACTGGA...ACTACTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR GCA 90 bp | AAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTACCCCATCTCCCAGAAGTTCCTaGATCAGTTGGACTGCGTTA | + |
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Preference number: 4 (lower is better) Translates to: KPASRSGTSLTNISAVTPSPRSS*ISWTAL Trigger: TAACGCAGTCCAACTGATGCAGGAACTTCTGGGAGA...TGGGGTAACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR GCA 90 bp | CCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGTAGTCTCTTCACTCAACCCTaGCTCTTCGAGTTCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: PQHPFALLIPSTSSHQSSLFTQP*LFEFFC Trigger: GCAGAAGAACTCGAAGAGGCAGGGTTGAGTGAAGAG...ACTACTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS-3UTR CCA 90 bp | CATCCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGCTGTGTGGATACCCTaGAGTGTCCAGTACCTGTAT | + |
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Preference number: 4 (lower is better) Translates to: HPVKPASRSGTSLTNISAAVWIP*SVQYLY Trigger: ATACAGGTACTGGACACTCCAGGGTATCCACACAGC...GGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGGATG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CCA 90 bp | CATCTCTGCCGTTACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTCGAGTTCTTCTGCATaGGTAAAAAGGACAGCCATG | + |
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Preference number: 4 (lower is better) Translates to: HLCRYPTASFCFADTQHFSSSSA*VKRTAM Trigger: CATGGCTGTCCTTTTTACCCATGCAGAAGAACTCGA...GAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTAACGGCAGAGATG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR CAA 72 bp | AACATCTCTGCCGTTACCCCACAGCATCCTTTTGCTTaGCTGATACCCAGCACTTCTTCACACCAGAGTAGT | + |
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Preference number: 4 (lower is better) Translates to: NISAVTPQHPFA*LIPSTSSHQSS Trigger: ACTACTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTAACGGCAGAGATGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS-3UTR GCA 90 bp | CCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGTAGTTCTCCCAGAAGTTCCTaGATCAGTTGGACTGCGTTA | + |
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Preference number: 4 (lower is better) Translates to: PQHPFALLIPSTSSHQSSSPRSS*ISWTAL Trigger: TAACGCAGTCCAACTGATGCAGGAACTTCTGGGAGA...ACTACTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CCA 90 bp | ATAGCCATACAGGGAATTCTCATGCCCCATATTCATGTGAAGAAAGGCAGGTTAGCTCAGCTTGCTGTGTaGATACCCTGGAGTGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: IAIQGILMPHIHVKKGRLAQLAV*IPWSVQ Trigger: CTGGACACTCCAGGGTATCCACACAGCAAGCTGAGC...TAACCTGCCTTTCTTCACATGAATATGGGGCATGAGAATTCCCTGTATGGCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR GCA 90 bp | CCCTCACACTGTGTATCTCAGTGGGTTAGTATACCACAATTTGAATATTATTCTAGCTGCGGCCCAGGCTaGACTCTTTGGTTACGGAGC | + |
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Preference number: 4 (lower is better) Translates to: PSHCVSQWVSIPQFEYYSSCGPG*TLWLRS Trigger: GCTCCGTAACCAAAGAGTGCAGCCTGGGCCGCAGCT...AGAATAATATTCAAATTGTGGTATACTAACCCACTGAGATACACAGTGTGAGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CCA 90 bp | CCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGTAGTTCGAGTTCTTCTGCATaGGTAAAAAGGACAGCCATG | + |
|
Preference number: 4 (lower is better) Translates to: PQHPFALLIPSTSSHQSSSSSSA*VKRTAM Trigger: CATGGCTGTCCTTTTTACCCATGCAGAAGAACTCGA...ACTACTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS-3UTR CCA 90 bp | CCCTCACACTGTGTATCTCAGTGGGTTAGTATACCACAATTTGAATATTATTCTGCTCAGCTTGCTGTGTaGATACCCTGGAGTGTCCAG | + |
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Preference number: 4 (lower is better) Translates to: PSHCVSQWVSIPQFEYYSAQLAV*IPWSVQ Trigger: CTGGACACTCCAGGGTATCCACACAGCAAGCTGAGC...AGAATAATATTCAAATTGTGGTATACTAACCCACTGAGATACACAGTGTGAGGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CCA 90 bp | ATAGCCATACAGGGAATTCTCATGCCCCATATTCATGTGAAGAAAGGCAGGTTATCGAGTTCTTCTGCATaGGTAAAAAGGACAGCCATG | + |
|
Preference number: 4 (lower is better) Translates to: IAIQGILMPHIHVKKGRLSSSSA*VKRTAM Trigger: CATGGCTGTCCTTTTTACCCATGCAGAAGAACTCGA...TAACCTGCCTTTCTTCACATGAATATGGGGCATGAGAATTCCCTGTATGGCTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS-3UTR GCA 90 bp | CCCTCACACTGTGTATCTCAGTGGGTTAGTATACCACAATTTGAATATTATTCTCTCTTCACTCAACCCTaGCTCTTCGAGTTCTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: PSHCVSQWVSIPQFEYYSLFTQP*LFEFFC Trigger: GCAGAAGAACTCGAAGAGGCAGGGTTGAGTGAAGAG...AGAATAATATTCAAATTGTGGTATACTAACCCACTGAGATACACAGTGTGAGGG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS-3UTR CCA 90 bp | CCCTCACACTGTGTATCTCAGTGGGTTAGTATACCACAATTTGAATATTATTCTTCGAGTTCTTCTGCATaGGTAAAAAGGACAGCCATG | + |
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Preference number: 4 (lower is better) Translates to: PSHCVSQWVSIPQFEYYSSSSSA*VKRTAM Trigger: CATGGCTGTCCTTTTTACCCATGCAGAAGAACTCGA...AGAATAATATTCAAATTGTGGTATACTAACCCACTGAGATACACAGTGTGAGGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| 3UTR CAA 72 bp | TATTCTATTAACAAACATCTAGATAGTTTTCAGTCTTaGACTCTGATGAATGGTACCACCGTGAGCATTCTT | + |
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Preference number: 4 (lower is better) Translates to: YSINKHLDSFQS*TLMNGTTVSIL Trigger: AAGAATGCTCACGGTGGTACCATTCATCAGAGTCAAAGACTGAAAACTATCTAGATGTTTGTTAATAGAATA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS TCA 90 bp | CTCAGCTTGCTGTGTGGATACCCTGGAGTGTCCAGTACCTGTATCTaGAGGCTGATCTCTTGTCCCCCTCGACGCATGAAGCCATGGAGG | + |
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Preference number: 5 (lower is better) Translates to: LSLLCGYPGVSSTCI*RLISCPPRRMKPWR Trigger: CCTCCATGGCTTCATGCGTCGAGGGGGACAAGAGATCAGCCTTCAGATACAGGTACTGGACACTCCAGGGTATCCACACAGCAAGCTGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | AAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTACCCCACTGAAGGCTGATCTCTaGTCCCCCTCGACGCATGAA | + |
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Preference number: 5 (lower is better) Translates to: KPASRSGTSLTNISAVTPLKADL*SPSTHE Trigger: TTCATGCGTCGAGGGGGACAAGAGATCAGCCTTCAG...TGGGGTAACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | TACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGCATCTCGTGCTCAGCTaGCTGTGTGGATACCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: YPTASFCFADTQHFFTPEHLVLS*LCGYPG Trigger: TCCAGGGTATCCACACAGCAAGCTGAGCACGAGATG...CTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS GCA 90 bp | GCAAGGCCTTCTTCACTTCCTGTTTTACACATCTCGTGCTCAGCTTaGTGTGTGGATACCCTGGAGTGTCCAGTACCTGTATCTGAAGGC | + |
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Preference number: 5 (lower is better) Translates to: ARPSSLPVLHISCSA*CVDTLECPVPVSEG Trigger: GCCTTCAGATACAGGTACTGGACACTCCAGGGTATCCACACAGCAAGCTGAGCACGAGATGTGTAAAACAGGAAGTGAAGAAGGCCTTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS GCA 90 bp | ACAGGAATCTCCCAGAAGTTCCTGCATCAGTTGGACTGCGTTAGATaGTTCCTGTCCAAAGAAAGGCACATCAGCTCTCTGGACCAGCAG | + |
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Preference number: 5 (lower is better) Translates to: TGISQKFLHQLDCVR*FLSKERHISSLDQQ Trigger: CTGCTGGTCCAGAGAGCTGATGTGCCTTTCTTTGGACAGGAAGCATCTAACGCAGTCCAACTGATGCAGGAACTTCTGGGAGATTCCTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS CCA 90 bp | TTCCTGTTTTACACATCTCGTGCTCAGCTTGCTGTGTGGATACCCTaGAGTGTCCAGTACCTGTATCTGAAGGCTGATCTCTTGTCCCCC | + |
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Preference number: 5 (lower is better) Translates to: FLFYTSRAQLAVWIP*SVQYLYLKADLLSP Trigger: GGGGGACAAGAGATCAGCCTTCAGATACAGGTACTGGACACTCCAGGGTATCCACACAGCAAGCTGAGCACGAGATGTGTAAAACAGGAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | CATCCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCCATCTCGTGCTCAGCTaGCTGTGTGGATACCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: HPVKPASRSGTSLTNISAHLVLS*LCGYPG Trigger: TCCAGGGTATCCACACAGCAAGCTGAGCACGAGATG...GGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGGATG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS CCA 90 bp | CTTCTTCACTTCCTGTTTTACACATCTCGTGCTCAGCTTGCTGTGTaGATACCCTGGAGTGTCCAGTACCTGTATCTGAAGGCTGATCTC | + |
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Preference number: 5 (lower is better) Translates to: LLHFLFYTSRAQLAV*IPWSVQYLYLKADL Trigger: GAGATCAGCCTTCAGATACAGGTACTGGACACTCCAGGGTATCCACACAGCAAGCTGAGCACGAGATGTGTAAAACAGGAAGTGAAGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | AAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTACCCCAAAGTTCCTGCATCAGTaGGACTGCGTTAGATGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: KPASRSGTSLTNISAVTPKFLHQ*DCVRCF Trigger: GAAGCATCTAACGCAGTCCAACTGATGCAGGAACTT...TGGGGTAACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS TCA 90 bp | TCAGCACTTCCCAAAAGAACATTCCCAGCAGAGCTTTTCCCACTCTaGGTCCTGCCAAAGACAGCCAAGTTGATGATCATCTTGTTGGTG | + |
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Preference number: 5 (lower is better) Translates to: SALPKRTFPAELFPL*VLPKTAKLMIILLV Trigger: CACCAACAAGATGATCATCAACTTGGCTGTCTTTGGCAGGACTCAGAGTGGGAAAAGCTCTGCTGGGAATGTTCTTTTGGGAAGTGCTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS GCA 90 bp | CAGTGTGTCAGAAGCCTCACGCAAATATTCCTCTTCACTCAACCCTaGCTCTTCGAGTTCTTCTGCATGGGTAAAAAGGACAGCCATGTA | + |
|
Preference number: 5 (lower is better) Translates to: QCVRSLTQIFLFTQP*LFEFFCMGKKDSHV Trigger: TACATGGCTGTCCTTTTTACCCATGCAGAAGAACTCGAAGAGGCAGGGTTGAGTGAAGAGGAATATTTGCGTGAGGCTTCTGACACACTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS-3UTR CAA 90 bp | AAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTACCCCACCAAAGACAGCCAAGTaGATGATCATCTTGTTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: KPASRSGTSLTNISAVTPPKTAK*MIILLV Trigger: CACCAACAAGATGATCATCAACTTGGCTGTCTTTGG...TGGGGTAACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | GTTACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGCCAAAGACAGCCAAGTaGATGATCATCTTGTTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: VTPQHPFALLIPSTSSHQPKTAK*MIILLV Trigger: CACCAACAAGATGATCATCAACTTGGCTGTCTTTGG...CTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | ATAGCCATACAGGGAATTCTCATGCCCCATATTCATGTGAAGAAAGGCAGGTTACTGAAGGCTGATCTCTaGTCCCCCTCGACGCATGAA | + |
|
Preference number: 5 (lower is better) Translates to: IAIQGILMPHIHVKKGRLLKADL*SPSTHE Trigger: TTCATGCGTCGAGGGGGACAAGAGATCAGCCTTCAG...TAACCTGCCTTTCTTCACATGAATATGGGGCATGAGAATTCCCTGTATGGCTAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | ATAGCCATACAGGGAATTCTCATGCCCCATATTCATGTGAAGAAAGGCAGGTTACATCTCGTGCTCAGCTaGCTGTGTGGATACCCTGGA | + |
|
Preference number: 5 (lower is better) Translates to: IAIQGILMPHIHVKKGRLHLVLS*LCGYPG Trigger: TCCAGGGTATCCACACAGCAAGCTGAGCACGAGATG...TAACCTGCCTTTCTTCACATGAATATGGGGCATGAGAATTCCCTGTATGGCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | TACCCCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGAAGATGGAGACCCTCTaGTCCAAAATGATGCAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: YPTASFCFADTQHFFTPEKMETL*SKMMQQ Trigger: TTGCTGCATCATTTTGGACAAGAGGGTCTCCATCTT...CTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGGGGTA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | CCACAGCATCCTTTTGCTTTGCTGATACCCAGCACTTCTTCACACCAGAGTAGTAAGTTCCTGCATCAGTaGGACTGCGTTAGATGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: PQHPFALLIPSTSSHQSSKFLHQ*DCVRCF Trigger: GAAGCATCTAACGCAGTCCAACTGATGCAGGAACTT...ACTACTCTGGTGTGAAGAAGTGCTGGGTATCAGCAAAGCAAAAGGATGCTGTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | CATCCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCAAGTTCCTGCATCAGTaGGACTGCGTTAGATGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: HPVKPASRSGTSLTNISAKFLHQ*DCVRCF Trigger: GAAGCATCTAACGCAGTCCAACTGATGCAGGAACTT...GGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGGATG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS GCA 90 bp | GTAATTCTTACAGGAATCTCCCAGAAGTTCCTGCATCAGTTGGACTaGGTTAGATGCTTCCTGTCCAAAGAAAGGCACATCAGCTCTCTG | + |
|
Preference number: 5 (lower is better) Translates to: VILTGISQKFLHQLD*VRCFLSKERHISSL Trigger: CAGAGAGCTGATGTGCCTTTCTTTGGACAGGAAGCATCTAACGCAGTCCAACTGATGCAGGAACTTCTGGGAGATTCCTGTAAGAATTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | CCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCGTTCCAAAGACAGCCAAGTaGATGATCATCTTGTTGGTG | + |
|
Preference number: 5 (lower is better) Translates to: PVKPASRSGTSLTNISAVPKTAK*MIILLV Trigger: CACCAACAAGATGATCATCAACTTGGCTGTCTTTGG...AACGGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS-3UTR CAA 90 bp | CATCCAGTAAAACCAGCTTCCAGATCAGGAACTAGCCTTACGAACATCTCTGCCAAGATGGAGACCCTCTaGTCCAAAATGATGCAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: HPVKPASRSGTSLTNISAKMETL*SKMMQQ Trigger: TTGCTGCATCATTTTGGACAAGAGGGTCTCCATCTT...GGCAGAGATGTTCGTAAGGCTAGTTCCTGATCTGGAAGCTGGTTTTACTGGATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS GCA 90 bp | ACGCAAATATTCCTCTTCACTCAACCCTGCCTCTTCGAGTTCTTCTaGATGGGTAAAAAGGACAGCCATGTAATTCTTACAGGAATCTCC | + |
|
Preference number: 5 (lower is better) Translates to: TQIFLFTQPCLFEFF*MGKKDSHVILTGIS Trigger: GGAGATTCCTGTAAGAATTACATGGCTGTCCTTTTTACCCATGCAGAAGAACTCGAAGAGGCAGGGTTGAGTGAAGAGGAATATTTGCGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS-3UTR CAA 90 bp | ATAGCCATACAGGGAATTCTCATGCCCCATATTCATGTGAAGAAAGGCAGGTTAAAGATGGAGACCCTCTaGTCCAAAATGATGCAGCAA | + |
|
Preference number: 5 (lower is better) Translates to: IAIQGILMPHIHVKKGRLKMETL*SKMMQQ Trigger: TTGCTGCATCATTTTGGACAAGAGGGTCTCCATCTT...TAACCTGCCTTTCTTCACATGAATATGGGGCATGAGAATTCCCTGTATGGCTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000163241.4 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS CAA 90 bp | TGGATACCCTGGAGTGTCCAGTACCTGTATCTGAAGGCTGATCTCTaGTCCCCCTCGACGCATGAAGCCATGGAGGTGACAGCTGCGGCC | + |
|
Preference number: 6 (lower is better) Translates to: WIPWSVQYLYLKADL*SPSTHEAMEVTAAA Trigger: GGCCGCAGCTGTCACCTCCATGGCTTCATGCGTCGAGGGGGACAAGAGATCAGCCTTCAGATACAGGTACTGGACACTCCAGGGTATCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS CCA 72 bp | GCTGCGGCCCAGGCTGCACTCTTTGGTTACGGAGCCTaGAGCAAAGCTACTGTAGAAGTCAGCACTTCCCAA | + |
|
Preference number: 6 (lower is better) Translates to: AAAQAALFGYGA*SKATVEVSTSQ Trigger: TTGGGAAGTGCTGACTTCTACAGTAGCTTTGCTCCAGGCTCCGTAACCAAAGAGTGCAGCCTGGGCCGCAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS TCA 72 bp | CTGTGTGGATACCCTGGAGTGTCCAGTACCTGTATCTaGAGGCTGATCTCTTGTCCCCCTCGACGCATGAAG | + |
|
Preference number: 6 (lower is better) Translates to: LCGYPGVSSTCI*RLISCPPRRMK Trigger: CTTCATGCGTCGAGGGGGACAAGAGATCAGCCTTCAGATACAGGTACTGGACACTCCAGGGTATCCACACAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS CCA 72 bp | TACACATCTCGTGCTCAGCTTGCTGTGTGGATACCCTaGAGTGTCCAGTACCTGTATCTGAAGGCTGATCTC | + |
|
Preference number: 6 (lower is better) Translates to: YTSRAQLAVWIP*SVQYLYLKADL Trigger: GAGATCAGCCTTCAGATACAGGTACTGGACACTCCAGGGTATCCACACAGCAAGCTGAGCACGAGATGTGTA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS CAA 72 bp | AGCTCTCTGGACCAGCAGAGCAAGATGGAGACCCTCTaGTCCAAAATGATGCAGCAAGGCCTTCTTCACTTC | + |
|
Preference number: 6 (lower is better) Translates to: SSLDQQSKMETL*SKMMQQGLLHF Trigger: GAAGTGAAGAAGGCCTTGCTGCATCATTTTGGACAAGAGGGTCTCCATCTTGCTCTGCTGGTCCAGAGAGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS GCA 72 bp | TCCCAGAAGTTCCTGCATCAGTTGGACTGCGTTAGATaGTTCCTGTCCAAAGAAAGGCACATCAGCTCTCTG | + |
|
Preference number: 6 (lower is better) Translates to: SQKFLHQLDCVR*FLSKERHISSL Trigger: CAGAGAGCTGATGTGCCTTTCTTTGGACAGGAAGCATCTAACGCAGTCCAACTGATGCAGGAACTTCTGGGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS CCA 72 bp | TTCCTGTTTTACACATCTCGTGCTCAGCTTGCTGTGTaGATACCCTGGAGTGTCCAGTACCTGTATCTGAAG | + |
|
Preference number: 6 (lower is better) Translates to: FLFYTSRAQLAV*IPWSVQYLYLK Trigger: CTTCAGATACAGGTACTGGACACTCCAGGGTATCCACACAGCAAGCTGAGCACGAGATGTGTAAAACAGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS CAA 72 bp | TTCTTCACTTCCTGTTTTACACATCTCGTGCTCAGCTaGCTGTGTGGATACCCTGGAGTGTCCAGTACCTGT | + |
|
Preference number: 6 (lower is better) Translates to: FFTSCFTHLVLS*LCGYPGVSSTC Trigger: ACAGGTACTGGACACTCCAGGGTATCCACACAGCAAGCTGAGCACGAGATGTGTAAAACAGGAAGTGAAGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS CAA 90 bp | AGCCATGTAATTCTTACAGGAATCTCCCAGAAGTTCCTGCATCAGTaGGACTGCGTTAGATGCTTCCTGTCCAAAGAAAGGCACATCAGC | + |
|
Preference number: 6 (lower is better) Translates to: SHVILTGISQKFLHQ*DCVRCFLSKERHIS Trigger: GCTGATGTGCCTTTCTTTGGACAGGAAGCATCTAACGCAGTCCAACTGATGCAGGAACTTCTGGGAGATTCCTGTAAGAATTACATGGCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS TCA 72 bp | ACCAGCAGAGCAAGATGGAGACCCTCTTGTCCAAAATaGTGCAGCAAGGCCTTCTTCACTTCCTGTTTTACA | + |
|
Preference number: 6 (lower is better) Translates to: TSRARWRPSCPK*CSKAFFTSCFT Trigger: TGTAAAACAGGAAGTGAAGAAGGCCTTGCTGCATCATTTTGGACAAGAGGGTCTCCATCTTGCTCTGCTGGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 |
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| CDS GCA 72 bp | AGAAGCCTCACGCAAATATTCCTCTTCACTCAACCCTaGCTCTTCGAGTTCTTCTGCATGGGTAAAAAGGAC | + |
|
Preference number: 6 (lower is better) Translates to: RSLTQIFLFTQP*LFEFFCMGKKD Trigger: GTCCTTTTTACCCATGCAGAAGAACTCGAAGAGGCAGGGTTGAGTGAAGAGGAATATTTGCGTGAGGCTTCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS TCA 72 bp | AAGTTTCCTCTTCCGGACAGGAAGATATATCTGTGCTaGACGGAATCGAGCAGGGTTAACAGTGTGTCAGAA | + |
|
Preference number: 6 (lower is better) Translates to: KFPLPDRKIYLC*TESSRVNSVSE Trigger: TTCTGACACACTGTTAACCCTGCTCGATTCCGTTCAGCACAGATATATCTTCCTGTCCGGAAGAGGAAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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| CDS GCA 72 bp | TTCCTCTTCACTCAACCCTGCCTCTTCGAGTTCTTCTaGATGGGTAAAAAGGACAGCCATGTAATTCTTACA | + |
|
Preference number: 6 (lower is better) Translates to: FLFTQPCLFEFF*MGKKDSHVILT Trigger: TGTAAGAATTACATGGCTGTCCTTTTTACCCATGCAGAAGAACTCGAAGAGGCAGGGTTGAGTGAAGAGGAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENSMUST00000163241.4 ENSMUST00000196701.2 ENSMUST00000212594.2 ENSMUST00000212804.2 ENSMUST00000212852.2 |
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