Pregenerated sensors for GIMAP9 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000051124Ensembl transcript IDs: ENSMUST00000054050.5, ENSMUST00000147936.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GGTCACAGTGTCCTCTTTACCCACATTCTTCCTGTTATGACCACGAATGTTCTGATGTCCACAAGGCAATaGCTGAGGCCATGGCTCCCA | + |
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Preference number: 2 (lower is better) Translates to: GHSVLFTHILPVMTTNVLMSTRQ*LRPWLP Trigger: TGGGAGCCATGGCCTCAGCCATTGCCTTGTGGACAT...CAGAACATTCGTGGTCATAACAGGAAGAATGTGGGTAAAGAGGACACTGTGACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| 3UTR-3UTR CCA 90 bp | AAATCATGTCAAATTATAAAGAACCCACCAGAACTTGCTATACCCACCCTATTGAAATCAGGCGGGAACTaGGCTGGAAGCTTCCTCCCT | + |
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Preference number: 2 (lower is better) Translates to: KSCQIIKNPPELAIPTLLKSGGN*AGSFLP Trigger: AGGGAGGAAGCTTCCAGCCCAGTTCCCGCCTGATTT...CAATAGGGTGGGTATAGCAAGTTCTGGTGGGTTCTTTATAATTTGACATGATTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147936.2 |
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| 3UTR CCA 72 bp | ACTGTACTATATGAAGAAATCAGGCGGGAACTGGGCTaGAAGCTTCCTCCCTTTTCATGTTGCTGGAAGTTG | + |
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Preference number: 3 (lower is better) Translates to: TVLYEEIRRELG*KLPPFSCCWKL Trigger: CAACTTCCAGCAACATGAAAAGGGAGGAAGCTTCCAGCCCAGTTCCCGCCTGATTTCTTCATATAGTACAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147936.2 |
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| 3UTR TCA 72 bp | GTCACAGTGTCCTCTTTACCCACATTCTTCCTGTTATaGCCACGAATGTTCTGTCAGGATTGTTTATGTAAG | + |
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Preference number: 3 (lower is better) Translates to: VTVSSLPTFFLL*PRMFCQDCLCK Trigger: CTTACATAAACAATCCTGACAGAACATTCGTGGTCATAACAGGAAGAATGTGGGTAAAGAGGACACTGTGAC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR TCA 90 bp | AAGCTAGAAAATGTCCACAAGGCAATGGCTGAGGCCATGGCTCCCAGCACCAAGTCTTCCCTACCAGAATaGTCCTCACTTCAGTGTCTC | + |
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Preference number: 4 (lower is better) Translates to: KLENVHKAMAEAMAPSTKSSLPE*SSLQCL Trigger: GAGACACTGAAGTGAGGATCATTCTGGTAGGGAAGA...CTTGGTGCTGGGAGCCATGGCCTCAGCCATTGCCTTGTGGACATTTTCTAGCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR GCA 90 bp | AGGCTTCAGGGGATGGGGGAAGAGTCTGGGATCGCTCTGAAGGTCAGGTGGCAAATCATGATTTCTCTGTaGAAAAACAATTTGTGCCGC | + |
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Preference number: 4 (lower is better) Translates to: RLQGMGEESGIALKVRWQIMISL*KNNLCR Trigger: GCGGCACAAATTGTTTTTGCACAGAGAAATCATGAT...TTGCCACCTGACCTTCAGAGCGATCCCAGACTCTTCCCCCATCCCCTGAAGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR TCA 90 bp | AAGCTAGAAAATGTCCACAAGGCAATGGCTGAGGCCATGGCTCCCAGCACCAAGAAATTATCAAGGCTCTaGTCCTCAAGGTCTTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: KLENVHKAMAEAMAPSTKKLSRL*SSRSSL Trigger: CAAAGAAGACCTTGAGGATCAGAGCCTTGATAATTT...CTTGGTGCTGGGAGCCATGGCCTCAGCCATTGCCTTGTGGACATTTTCTAGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR GCA 90 bp | CGGTCACAGTGTCCTCTTTACCCACATTCTTCCTGTTATGACCACGAATGTTCTCATGTACTTCAGGGCTaGCTCCCCAAAAAGACCCTT | + |
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Preference number: 4 (lower is better) Translates to: RSQCPLYPHSSCYDHECSHVLQG*LPKKTL Trigger: AAGGGTCTTTTTGGGGAGGCAGCCCTGAAGTACATG...AGAACATTCGTGGTCATAACAGGAAGAATGTGGGTAAAGAGGACACTGTGACCG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR TCA 90 bp | AAGCTAGAAAATGTCCACAAGGCAATGGCTGAGGCCATGGCTCCCAGCACCAAGTCAAGGTCTTCTTTGTaGGTAAACAAGATGATCATG | + |
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Preference number: 4 (lower is better) Translates to: KLENVHKAMAEAMAPSTKSRSSL*VNKMIM Trigger: CATGATCATCTTGTTTACTCACAAAGAAGACCTTGA...CTTGGTGCTGGGAGCCATGGCCTCAGCCATTGCCTTGTGGACATTTTCTAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR TCA 90 bp | CGGTCACAGTGTCCTCTTTACCCACATTCTTCCTGTTATGACCACGAATGTTCTATCAGCTGCTGCACTTaGTTTTCTTGCTCATCCAGA | + |
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Preference number: 4 (lower is better) Translates to: RSQCPLYPHSSCYDHECSISCCT*FSCSSR Trigger: TCTGGATGAGCAAGAAAATCAAGTGCAGCAGCTGAT...AGAACATTCGTGGTCATAACAGGAAGAATGTGGGTAAAGAGGACACTGTGACCG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR CCA 90 bp | TTCTGGAAACAACGGTCACAGTGTCCTCTTTACCCACATTCTTCCTGTTATGACTTTTCATGGTCTCCTTaGTGTCAAAGAGCCCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: FWKQRSQCPLYPHSSCYDFSWSP*CQRAQE Trigger: CTCCTGGGCTCTTTGACACCAAGGAGACCATGAAAA...GTCATAACAGGAAGAATGTGGGTAAAGAGGACACTGTGACCGTTGTTTCCAGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR CCA 90 bp | TTCAGGAGTAGCAATATGAGCATAAGCAAGAGGAGGCTTCAGGGGATGGGGGAAAACATGTGGTTTTCATaGTCTCCTTGGTGTCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: FRSSNMSISKRRLQGMGENMWFS*SPWCQR Trigger: TCTTTGACACCAAGGAGACCATGAAAACCACATGTT...TTCCCCCATCCCCTGAAGCCTCCTCTTGCTTATGCTCATATTGCTACTCCTGAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR TCA 90 bp | CTGTACTATATGAAGAAATCAGGCGGGAACTGGGCTGGAAGCTTCCTCCCTTTTAAATTATCAAGGCTCTaGTCCTCAAGGTCTTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: LYYMKKSGGNWAGSFLPFKLSRL*SSRSSL Trigger: CAAAGAAGACCTTGAGGATCAGAGCCTTGATAATTT...AAAAGGGAGGAAGCTTCCAGCCCAGTTCCCGCCTGATTTCTTCATATAGTACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147936.2 |
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| CDS-3UTR GCA 90 bp | GTGGCAATCTTGAGGTTCTGGAAACAACGGTCACAGTGTCCTCTTTACCCACATTTGCTCATCCAGAGCTaGTTTGTTATTAAAGGCCAA | + |
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Preference number: 4 (lower is better) Translates to: VAILRFWKQRSQCPLYPHLLIQS*FVIKGQ Trigger: TTGGCCTTTAATAACAAAGCAGCTCTGGATGAGCAA...ATGTGGGTAAAGAGGACACTGTGACCGTTGTTTCCAGAACCTCAAGATTGCCAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR GCA 90 bp | CTTGCTATACCCACCCTATTGCTAAACACTCTACACACTGTACTATATGAAGAACATGTACTTCAGGGCTaGCTCCCCAAAAAGACCCTT | + |
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Preference number: 4 (lower is better) Translates to: LAIPTLLLNTLHTVLYEEHVLQG*LPKKTL Trigger: AAGGGTCTTTTTGGGGAGGCAGCCCTGAAGTACATG...TTCTTCATATAGTACAGTGTGTAGAGTGTTTAGCAATAGGGTGGGTATAGCAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000147936.2 |
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| CDS-3UTR CCA 90 bp | CTTGCTATACCCACCCTATTGCTAAACACTCTACACACTGTACTATATGAAGAATTTTCATGGTCTCCTTaGTGTCAAAGAGCCCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: LAIPTLLLNTLHTVLYEEFSWSP*CQRAQE Trigger: CTCCTGGGCTCTTTGACACCAAGGAGACCATGAAAA...TTCTTCATATAGTACAGTGTGTAGAGTGTTTAGCAATAGGGTGGGTATAGCAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000147936.2 |
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| 3UTR CAA 72 bp | ATAAAGAACCCACCAGAACTTGCTATACCCACCCTATaGCTAAACACTCTACACACTGTACTATATGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: IKNPPELAIPTL*LNTLHTVLYEE Trigger: TTCTTCATATAGTACAGTGTGTAGAGTGTTTAGCAATAGGGTGGGTATAGCAAGTTCTGGTGGGTTCTTTAT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147936.2 |
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| CDS-3UTR CCA 90 bp | CAGTCAGGGAATGTAACATGTCACCGTAACCATCTTCAGAAAATACAATATACTAACATGTGGTTTTCATaGTCTCCTTGGTGTCAAAGA | + |
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Preference number: 4 (lower is better) Translates to: QSGNVTCHRNHLQKIQYTNMWFS*SPWCQR Trigger: TCTTTGACACCAAGGAGACCATGAAAACCACATGTT...AGTATATTGTATTTTCTGAAGATGGTTACGGTGACATGTTACATTCCCTGACTG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000147936.2 |
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| CDS-3UTR TCA 90 bp | AAATCATGTCAAATTATAAAGAACCCACCAGAACTTGCTATACCCACCCTATTGTCAAGGTCTTCTTTGTaGGTAAACAAGATGATCATG | + |
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Preference number: 4 (lower is better) Translates to: KSCQIIKNPPELAIPTLLSRSSL*VNKMIM Trigger: CATGATCATCTTGTTTACTCACAAAGAAGACCTTGA...CAATAGGGTGGGTATAGCAAGTTCTGGTGGGTTCTTTATAATTTGACATGATTT 37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147936.2 |
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| CDS-3UTR CAA 90 bp | CTAGAAAATGTCCACAAGGCAATGGCTGAGGCCATGGCTCCCAGCACCAAGCAAGTTTTCATGGTCTCCTaGGTGTCAAAGAGCCCAGGA | + |
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Preference number: 5 (lower is better) Translates to: LENVHKAMAEAMAPSTKQVFMVS*VSKSPG Trigger: TCCTGGGCTCTTTGACACCAAGGAGACCATGAAAAC...TTGCTTGGTGCTGGGAGCCATGGCCTCAGCCATTGCCTTGTGGACATTTTCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR CAA 90 bp | CAGTGTCCTCTTTACCCACATTCTTCCTGTTATGACCACGAATGTTCTGTCAGGCTCCCGAGGATGGTGTaGGCTGTAGCACTCTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: QCPLYPHSSCYDHECSVRLPRMV*AVALFP Trigger: TGGGAAGAGTGCTACAGCCAACACCATCCTCGGGAG...CCTGACAGAACATTCGTGGTCATAACAGGAAGAATGTGGGTAAAGAGGACACTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR CAA 90 bp | CTAGAAAATGTCCACAAGGCAATGGCTGAGGCCATGGCTCCCAGCACCAAGCAACTGCACTTGATTTTCTaGCTCATCCAGAGCTGCTTT | + |
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Preference number: 5 (lower is better) Translates to: LENVHKAMAEAMAPSTKQLHLIF*LIQSCF Trigger: AAAGCAGCTCTGGATGAGCAAGAAAATCAAGTGCAG...TTGCTTGGTGCTGGGAGCCATGGCCTCAGCCATTGCCTTGTGGACATTTTCTAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS GCA 90 bp | AGGAGTGTCGACTACAACAAGGTTTTTCCCCTTCCACTCCCTGTATaGTCTCTGGCAGGTCTTGGTAACAGCATTGGCACAAATCTTAGA | + |
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Preference number: 5 (lower is better) Translates to: RSVDYNKVFPLPLPV*SLAGLGNSIGTNLR Trigger: TCTAAGATTTGTGCCAATGCTGTTACCAAGACCTGCCAGAGAGCATACAGGGAGTGGAAGGGGAAAAACCTTGTTGTAGTCGACACTCCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054050.5 ENSMUST00000147936.2 |
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| CDS-3UTR CAA 90 bp | TTCTGGAAACAACGGTCACAGTGTCCTCTTTACCCACATTCTTCCTGTTATGACGCTCTCTGGCAGGTCTaGGTAACAGCATTGGCACAA | + |
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Preference number: 5 (lower is better) Translates to: FWKQRSQCPLYPHSSCYDALWQV*VTALAQ Trigger: TTGTGCCAATGCTGTTACCAAGACCTGCCAGAGAGC...GTCATAACAGGAAGAATGTGGGTAAAGAGGACACTGTGACCGTTGTTTCCAGAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR CAA 90 bp | AAATCATGTCAAATTATAAAGAACCCACCAGAACTTGCTATACCCACCCTATTGCTCCCGAGGATGGTGTaGGCTGTAGCACTCTTCCCA | + |
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Preference number: 5 (lower is better) Translates to: KSCQIIKNPPELAIPTLLLPRMV*AVALFP Trigger: TGGGAAGAGTGCTACAGCCAACACCATCCTCGGGAG...CAATAGGGTGGGTATAGCAAGTTCTGGTGGGTTCTTTATAATTTGACATGATTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147936.2 |
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| CDS CCA 90 bp | TCGACTACAACAAGGTTTTTCCCCTTCCACTCCCTGTATGCTCTCTaGCAGGTCTTGGTAACAGCATTGGCACAAATCTTAGAATCAAAT | + |
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Preference number: 5 (lower is better) Translates to: STTTRFFPFHSLYAL*QVLVTALAQILESN Trigger: ATTTGATTCTAAGATTTGTGCCAATGCTGTTACCAAGACCTGCCAGAGAGCATACAGGGAGTGGAAGGGGAAAAACCTTGTTGTAGTCGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054050.5 ENSMUST00000147936.2 |
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| CDS GCA 90 bp | GCTGAGCATAAGTCTCCTTCAGTTCCTCTAGACAATGGTTCAGCCTaGTATCTATGTCCTTATATATCTTGTCAGAAAAGTAGGATCCGC | + |
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Preference number: 5 (lower is better) Translates to: AEHKSPSVPLDNGSA*YLCPYISCQKSRIR Trigger: GCGGATCCTACTTTTCTGACAAGATATATAAGGACATAGATAGCAGGCTGAACCATTGTCTAGAGGAACTGAAGGAGACTTATGCTCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS-3UTR CAA 90 bp | AAATCATGTCAAATTATAAAGAACCCACCAGAACTTGCTATACCCACCCTATTGGCTCTCTGGCAGGTCTaGGTAACAGCATTGGCACAA | + |
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Preference number: 5 (lower is better) Translates to: KSCQIIKNPPELAIPTLLALWQV*VTALAQ Trigger: TTGTGCCAATGCTGTTACCAAGACCTGCCAGAGAGC...CAATAGGGTGGGTATAGCAAGTTCTGGTGGGTTCTTTATAATTTGACATGATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000147936.2 |
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| CDS-3UTR CAA 90 bp | CCACGAATGTTCTGTCAGGATTGTTTATGTAAGCTAGAAAATGTCCACAAGGCAGATTTCACTAGTGAGTaGCTGAGCATAAGTCTCCTT | + |
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Preference number: 5 (lower is better) Translates to: PRMFCQDCLCKLENVHKADFTSE*LSISLL Trigger: AAGGAGACTTATGCTCAGCAACTCACTAGTGAAATC...TGCCTTGTGGACATTTTCTAGCTTACATAAACAATCCTGACAGAACATTCGTGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS TCA 72 bp | CGTGAGGCCCAGGGCAGGAGTAGAGAACGCAGCGGCTaGTCTCGAAACATGTGGTTTTCATGGTCTCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: REAQGRSRERSG*SRNMWFSWSPW Trigger: CCAAGGAGACCATGAAAACCACATGTTTCGAGATCAGCCGCTGCGTTCTCTACTCCTGCCCTGGGCCTCACG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054050.5 ENSMUST00000147936.2 |
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| CDS GCA 72 bp | GACTACAACAAGGTTTTTCCCCTTCCACTCCCTGTATaGTCTCTGGCAGGTCTTGGTAACAGCATTGGCACA | + |
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Preference number: 6 (lower is better) Translates to: DYNKVFPLPLPV*SLAGLGNSIGT Trigger: TGTGCCAATGCTGTTACCAAGACCTGCCAGAGAGCATACAGGGAGTGGAAGGGGAAAAACCTTGTTGTAGTC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054050.5 ENSMUST00000147936.2 |
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| CDS CAA 72 bp | CGGCTGATCTCGAAACATGTGGTTTTCATGGTCTCCTaGGTGTCAAAGAGCCCAGGAGTGTCGACTACAACA | + |
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Preference number: 6 (lower is better) Translates to: RLISKHVVFMVS*VSKSPGVSTTT Trigger: TGTTGTAGTCGACACTCCTGGGCTCTTTGACACCAAGGAGACCATGAAAACCACATGTTTCGAGATCAGCCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054050.5 ENSMUST00000147936.2 |
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| CDS CAA 90 bp | AGAACGCAGCGGCTGATCTCGAAACATGTGGTTTTCATGGTCTCCTaGGTGTCAAAGAGCCCAGGAGTGTCGACTACAACAAGGTTTTTC | + |
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Preference number: 6 (lower is better) Translates to: RTQRLISKHVVFMVS*VSKSPGVSTTTRFF Trigger: GAAAAACCTTGTTGTAGTCGACACTCCTGGGCTCTTTGACACCAAGGAGACCATGAAAACCACATGTTTCGAGATCAGCCGCTGCGTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054050.5 ENSMUST00000147936.2 |
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| CDS GCA 72 bp | TTTGTGAGTAAACAAGATGATCATGTACTTCAGGGCTaGCTCCCCAAAAAGACCCTTGATCAGAGCGACCGT | + |
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Preference number: 6 (lower is better) Translates to: FVSKQDDHVLQG*LPKKTLDQSDR Trigger: ACGGTCGCTCTGATCAAGGGTCTTTTTGGGGAGGCAGCCCTGAAGTACATGATCATCTTGTTTACTCACAAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000054050.5 ENSMUST00000147936.2 |
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| CDS TCA 72 bp | TTGGTAACAGCATTGGCACAAATCTTAGAATCAAATTaGCGTCTCCCGAGGATGGTGTTGGCTGTAGCACTC | + |
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Preference number: 6 (lower is better) Translates to: LVTALAQILESN*RLPRMVLAVAL Trigger: GAGTGCTACAGCCAACACCATCCTCGGGAGACGTCAATTTGATTCTAAGATTTGTGCCAATGCTGTTACCAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000054050.5 ENSMUST00000147936.2 |
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| CDS CAA 72 bp | TTCCCCTTCCACTCCCTGTATGCTCTCTGGCAGGTCTaGGTAACAGCATTGGCACAAATCTTAGAATCAAAT | + |
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Preference number: 6 (lower is better) Translates to: FPFHSLYALWQV*VTALAQILESN Trigger: ATTTGATTCTAAGATTTGTGCCAATGCTGTTACCAAGACCTGCCAGAGAGCATACAGGGAGTGGAAGGGGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000054050.5 ENSMUST00000147936.2 |
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| CDS CAA 90 bp | ATCTATGTCCTTATATATCTTGTCAGAAAAGTAGGATCCGCCATTTaGGGCCACCATTTTCTCTGTCAGTTCTATCAGCTGCTGCACTTG | + |
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Preference number: 6 (lower is better) Translates to: IYVLIYLVRKVGSAI*GHHFLCQFYQLLHL Trigger: CAAGTGCAGCAGCTGATAGAACTGACAGAGAAAATGGTGGCCCAAAATGGCGGATCCTACTTTTCTGACAAGATATATAAGGACATAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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| CDS CAA 72 bp | CTTATATATCTTGTCAGAAAAGTAGGATCCGCCATTTaGGGCCACCATTTTCTCTGTCAGTTCTATCAGCTG | + |
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Preference number: 6 (lower is better) Translates to: LIYLVRKVGSAI*GHHFLCQFYQL Trigger: CAGCTGATAGAACTGACAGAGAAAATGGTGGCCCAAAATGGCGGATCCTACTTTTCTGACAAGATATATAAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000054050.5 |
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