Pregenerated sensors for GHRHR (Mus musculus)
Ensembl gene IDs: ENSMUSG00000004654Ensembl transcript IDs: ENSMUST00000063578.6, ENSMUST00000203241.2
Found 78 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AGGTCAGCACCTTCAATCTCGATCGGGGAGGTGTGGTCCACTCAGTaGAGGTCCGTCGAGCTGGCAGAAGTTCAGGGTCGTGGCCATACC | + |
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Preference number: 1 (lower is better) Translates to: RSAPSISIGEVWSTQ*RSVELAEVQGRGHT Trigger: GGTATGGCCACGACCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCCCGATCGAGATTGAAGGTGCTGACCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| 3UTR TCA 90 bp | AGGGGAAGGAGAACGGTAGGGAGGACCGCATTGCCCGTGGTGCCATaGCAGTTTGAGCACAGGGTTTGGGGCTTGGCCCTTGTGATGATG | + |
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Preference number: 1 (lower is better) Translates to: RGRRTVGRTALPVVP*QFEHRVWGLALVMM Trigger: CATCATCACAAGGGCCAAGCCCCAAACCCTGTGCTCAAACTGTCATGGCACCACGGGCAATGCGGTCCTCCCTACCGTTCTCCTTCCCCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| 3UTR CCA 90 bp | CCTAGCACTCAGAGGTCAGCACCTTCAATCTCGATCGGGGAGGTGTaGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTCAGGGT | + |
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Preference number: 1 (lower is better) Translates to: PSTQRSAPSISIGEV*STQCRSVELAEVQG Trigger: ACCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCCCGATCGAGATTGAAGGTGCTGACCTCTGAGTGCTAGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| 3UTR TCA 90 bp | AAAGAACAGATGGGAGCAGATGCAGGAACTGAGAAAGTCGAAGGTTaGTATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGG | + |
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Preference number: 1 (lower is better) Translates to: KEQMGADAGTEKVEG*YTGTWRKQMQRRGR Trigger: CCTTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTTCGACTTTCTCAGTTCCTGCATCTGCTCCCATCTGTTCTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| 3UTR-3UTR CCA 90 bp | GGCCTAGCACTCAGAGGTCAGCACCTTCAATCTCGATCGGGGAGGTGTGGTCCAAGAAGTTCAGGGTCGTaGCCATACCATTTGCGTGAA | + |
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Preference number: 2 (lower is better) Translates to: GLALRGQHLQSRSGRCGPRSSGS*PYHLRE Trigger: TTCACGCAAATGGTATGGCCACGACCCTGAACTTCT...TGGACCACACCTCCCCGATCGAGATTGAAGGTGCTGACCTCTGAGTGCTAGGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| 3UTR-3UTR TCA 90 bp | TTTCTCTGGGCCTTGGGCAATAGCCCTAGATGGGAAGAAAGAACAGATGGGAGCTTGCCCGTGGTGCCATaGCAGTTTGAGCACAGGGTT | + |
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Preference number: 2 (lower is better) Translates to: FLWALGNSPRWEERTDGSLPVVP*QFEHRV Trigger: AACCCTGTGCTCAAACTGTCATGGCACCACGGGCAA...GCTCCCATCTGTTCTTTCTTCCCATCTAGGGCTATTGCCCAAGGCCCAGAGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| 3UTR-3UTR TCA 90 bp | AAGGTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGGAGAAGGTGCCATGACAGTTTaGGCACAGGGTTTGGGGCTT | + |
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Preference number: 2 (lower is better) Translates to: KVDIRGPGESRCREGEGEGAMTV*AQGLGL Trigger: AAGCCCCAAACCCTGTGCTCAAACTGTCATGGCACC...TTCTCCTTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| 3UTR-3UTR CCA 90 bp | AAGTTTATTGGTTTCTCTGGGCCTTGGGCAATAGCCCTAGATGGGAAGAAAGAATTTGAGCACAGGGTTTaGGGCTTGGCCCTTGTGATG | + |
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Preference number: 2 (lower is better) Translates to: KFIGFSGPWAIALDGKKEFEHRV*GLALVM Trigger: CATCACAAGGGCCAAGCCCCAAACCCTGTGCTCAAA...TTCTTTCTTCCCATCTAGGGCTATTGCCCAAGGCCCAGAGAAACCAATAAACTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| 3UTR CCA 72 bp | GGGAGGTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTaGCAGAAGTTCAGGGTCGTGGCCATACCATTTGCG | + |
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Preference number: 3 (lower is better) Translates to: GRCGPLSAGPSS*QKFRVVAIPFA Trigger: CGCAAATGGTATGGCCACGACCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| 3UTR TCA 72 bp | AGAACGGTAGGGAGGACCGCATTGCCCGTGGTGCCATaGCAGTTTGAGCACAGGGTTTGGGGCTTGGCCCTT | + |
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Preference number: 3 (lower is better) Translates to: RTVGRTALPVVP*QFEHRVWGLAL Trigger: AAGGGCCAAGCCCCAAACCCTGTGCTCAAACTGTCATGGCACCACGGGCAATGCGGTCCTCCCTACCGTTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| 3UTR GCA 72 bp | CCTTCAATCTCGATCGGGGAGGTGTGGTCCACTCAGTaGAGGTCCGTCGAGCTGGCAGAAGTTCAGGGTCGT | + |
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Preference number: 3 (lower is better) Translates to: PSISIGEVWSTQ*RSVELAEVQGR Trigger: ACGACCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCCCGATCGAGATTGAAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| 3UTR CCA 72 bp | CAGAGGTCAGCACCTTCAATCTCGATCGGGGAGGTGTaGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAA | + |
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Preference number: 3 (lower is better) Translates to: QRSAPSISIGEV*STQCRSVELAE Trigger: TTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCCCGATCGAGATTGAAGGTGCTGACCTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| 3UTR TCA 72 bp | AGGGAGGACCGCATTGCCCGTGGTGCCATGACAGTTTaGGCACAGGGTTTGGGGCTTGGCCCTTGTGATGAT | + |
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Preference number: 3 (lower is better) Translates to: REDRIARGAMTV*AQGLGLGPCDD Trigger: ATCATCACAAGGGCCAAGCCCCAAACCCTGTGCTCAAACTGTCATGGCACCACGGGCAATGCGGTCCTCCCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| 3UTR TCA 72 bp | ATGGGAGCAGATGCAGGAACTGAGAAAGTCGAAGGTTaGTATACGGGGACCTGGAGAAAGCAGATGCAGAGA | + |
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Preference number: 3 (lower is better) Translates to: MGADAGTEKVEG*YTGTWRKQMQR Trigger: TCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTTCGACTTTCTCAGTTCCTGCATCTGCTCCCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CCA 90 bp | GGCCTAGCACTCAGAGGTCAGCACCTTCAATCTCGATCGGGGAGGTGTGGTCCAGGGAGAGAGACCCACTaGCCAGAGCCTGTCGGGGGC | + |
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Preference number: 4 (lower is better) Translates to: GLALRGQHLQSRSGRCGPGRETH*PEPVGG Trigger: GCCCCCGACAGGCTCTGGCCAGTGGGTCTCTCTCCC...TGGACCACACCTCCCCGATCGAGATTGAAGGTGCTGACCTCTGAGTGCTAGGCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR TCA 90 bp | GCTGGCCTAGCACTCAGAGGTCAGCACCTTCAATCTCGATCGGGGAGGTGTGGTGGCAGTGGAGCCTCCTaGGGGCAACCAGGATGGCAA | + |
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Preference number: 4 (lower is better) Translates to: AGLALRGQHLQSRSGRCGGSGAS*GQPGWQ Trigger: TTGCCATCCTGGTTGCCCTCAGGAGGCTCCACTGCC...ACCACACCTCCCCGATCGAGATTGAAGGTGCTGACCTCTGAGTGCTAGGCCAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR TCA 90 bp | GTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTCAGGGTCGTGGCCTGCCAACAGCCAGCTaGAGTTGGTCATGGTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: VWSTQCRSVELAEVQGRGLPTAS*SWSWWP Trigger: TGGCCACCATGACCAACTTCAGCTGGCTGTTGGCAG...GCCACGACCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR CCA 90 bp | CGGGGAGGTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTCAGGGAGCCACAGGGTATGGTaGGAAGGGATTAGACCAGCC | + |
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Preference number: 4 (lower is better) Translates to: RGGVVHSVQVRRAGRSSGSHRVW*EGIRPA Trigger: GGCTGGTCTAATCCCTTCCCACCATACCCTGTGGCT...CCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCCCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR GCA 90 bp | GGGAGGTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTCAGGGTCGGGCTACAATGGAGATaGTGTGGCCCGTGGTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: GRCGPLSAGPSSWQKFRVGLQWR*CGPWCR Trigger: TCTACACCACGGGCCACAGCATCTCCATTGTAGCCC...GACCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR CCA 90 bp | TGGCCTAGCACTCAGAGGTCAGCACCTTCAATCTCGATCGGGGAGGTGTGGTCCCGCAGAGGGCTACAATaGAGATGCTGTGGCCCGTGG | + |
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Preference number: 4 (lower is better) Translates to: WPSTQRSAPSISIGEVWSRRGLQ*RCCGPW Trigger: CCACGGGCCACAGCATCTCCATTGTAGCCCTCTGCG...GGACCACACCTCCCCGATCGAGATTGAAGGTGCTGACCTCTGAGTGCTAGGCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR TCA 90 bp | AAGGGGAAGGAGAACGGTAGGGAGGACCGCATTGCCCGTGGTGCCATGACAGTTCTGCCAACAGCCAGCTaGAGTTGGTCATGGTGGCCA | + |
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Preference number: 4 (lower is better) Translates to: KGKENGREDRIARGAMTVLPTAS*SWSWWP Trigger: TGGCCACCATGACCAACTTCAGCTGGCTGTTGGCAG...AACTGTCATGGCACCACGGGCAATGCGGTCCTCCCTACCGTTCTCCTTCCCCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CCA 90 bp | AGTCGAAGGTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGGGGAGAGAGACCCACTaGCCAGAGCCTGTCGGGGGC | + |
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Preference number: 4 (lower is better) Translates to: SRRLIYGDLEKADAEKGKGRETH*PEPVGG Trigger: GCCCCCGACAGGCTCTGGCCAGTGGGTCTCTCTCCC...CTTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTTCGACT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CCA 90 bp | GTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTCAGGGTCGTGGCCAGCCACCAAAAAGCTaGTTTGGACCTGGGGGATGT | + |
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Preference number: 4 (lower is better) Translates to: VWSTQCRSVELAEVQGRGQPPKS*FGPGGC Trigger: ACATCCCCCAGGTCCAAACCAGCTTTTTGGTGGCTG...GCCACGACCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACAC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR TCA 90 bp | GTGATGATGGCTGGCCTAGCACTCAGAGGTCAGCACCTTCAATCTCGATCGGGGGCAACAATGAAGCCCTaGAAGGACCCCAACCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: VMMAGLALRGQHLQSRSGATMKP*KDPNPS Trigger: GCTGGGGTTGGGGTCCTTTCAGGGCTTCATTGTTGC...CCCCGATCGAGATTGAAGGTGCTGACCTCTGAGTGCTAGGCCAGCCATCATCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR GCA 90 bp | GGGAGGTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTCAGGGTCCAGGTAGACAGCTTCTaGCAACAGCCAGCTGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: GRCGPLSAGPSSWQKFRVQVDSF*QQPAEV Trigger: AACTTCAGCTGGCTGTTGGCAGAAGCTGTCTACCTG...GACCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR GCA 90 bp | AAGGGGAAGGAGAACGGTAGGGAGGACCGCATTGCCCGTGGTGCCATGACAGTTCCTCAAAAGCCAGTTTaGAGCCCACCCACGTACCAG | + |
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Preference number: 4 (lower is better) Translates to: KGKENGREDRIARGAMTVPQKPV*SPPTYQ Trigger: CTGGTACGTGGGTGGGCTGCAAACTGGCTTTTGAGG...AACTGTCATGGCACCACGGGCAATGCGGTCCTCCCTACCGTTCTCCTTCCCCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CCA 90 bp | GGGAGGTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTCAGGGTCTGGCCAAATGTGAGATaGCCACAGAGACCTTGCACA | + |
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Preference number: 4 (lower is better) Translates to: GRCGPLSAGPSSWQKFRVWPNVR*PQRPCT Trigger: TGTGCAAGGTCTCTGTGGCCATCTCACATTTGGCCA...GACCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR CCA 90 bp | ATCGGGGAGGTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTCAGACCAAAAAGCTGGTTTaGACCTGGGGGATGTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: IGEVWSTQCRSVELAEVQTKKLV*TWGMWR Trigger: CCTCCACATCCCCCAGGTCCAAACCAGCTTTTTGGT...CTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCCCGAT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR TCA 90 bp | AGTCGAAGGTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGGGCAGTGGAGCCTCCTaGGGGCAACCAGGATGGCAA | + |
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Preference number: 4 (lower is better) Translates to: SRRLIYGDLEKADAEKGKGSGAS*GQPGWQ Trigger: TTGCCATCCTGGTTGCCCTCAGGAGGCTCCACTGCC...CTTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTTCGACT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR TCA 90 bp | GCTGGCCTAGCACTCAGAGGTCAGCACCTTCAATCTCGATCGGGGAGGTGTGGTAGAGGACAGCAACAATaGAGCCCTGAAAGGACCCCA | + |
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Preference number: 4 (lower is better) Translates to: AGLALRGQHLQSRSGRCGRGQQQ*SPERTP Trigger: TGGGGTCCTTTCAGGGCTTCATTGTTGCTGTCCTCT...ACCACACCTCCCCGATCGAGATTGAAGGTGCTGACCTCTGAGTGCTAGGCCAGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR CCA 90 bp | AAGGGGAAGGAGAACGGTAGGGAGGACCGCATTGCCCGTGGTGCCATGACAGTTCAGCCACCAAAAAGCTaGTTTGGACCTGGGGGATGT | + |
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Preference number: 4 (lower is better) Translates to: KGKENGREDRIARGAMTVQPPKS*FGPGGC Trigger: ACATCCCCCAGGTCCAAACCAGCTTTTTGGTGGCTG...AACTGTCATGGCACCACGGGCAATGCGGTCCTCCCTACCGTTCTCCTTCCCCTT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CCA 90 bp | CTCTGGGCCTTGGGCAATAGCCCTAGATGGGAAGAAAGAACAGATGGGAGCAGACCTTGCACAGGACAGTaGACATGCTGCAGTGGTCCG | + |
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Preference number: 4 (lower is better) Translates to: LWALGNSPRWEERTDGSRPCTGQ*TCCSGP Trigger: CGGACCACTGCAGCATGTCCACTGTCCTGTGCAAGG...TCTGCTCCCATCTGTTCTTTCTTCCCATCTAGGGCTATTGCCCAAGGCCCAGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CCA 90 bp | CGAGCTGGCAGAAGTTCAGGGTCGTGGCCATACCATTTGCGTGAAATCTCTGTCCCTTGCACAGGACAGTaGACATGCTGCAGTGGTCCG | + |
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Preference number: 4 (lower is better) Translates to: RAGRSSGSWPYHLREISVPCTGQ*TCCSGP Trigger: CGGACCACTGCAGCATGTCCACTGTCCTGTGCAAGG...GACAGAGATTTCACGCAAATGGTATGGCCACGACCCTGAACTTCTGCCAGCTCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR TCA 90 bp | GAAAGTCGAAGGTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGGCAACAATGAAGCCCTaGAAGGACCCCAACCCCAGC | + |
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Preference number: 4 (lower is better) Translates to: ESRRLIYGDLEKADAEKGATMKP*KDPNPS Trigger: GCTGGGGTTGGGGTCCTTTCAGGGCTTCATTGTTGC...CCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTTCGACTTTC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CCA 90 bp | AGAAAGTCGAAGGTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGCGCAGAGGGCTACAATaGAGATGCTGTGGCCCGTGG | + |
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Preference number: 4 (lower is better) Translates to: RKSKVDIRGPGESRCREGRRGLQ*RCCGPW Trigger: CCACGGGCCACAGCATCTCCATTGTAGCCCTCTGCG...CCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTTCGACTTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR TCA 90 bp | GTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGGAGAACGGAGAGGACAGCAACAATaGAGCCCTGAAAGGACCCCA | + |
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Preference number: 4 (lower is better) Translates to: VDIRGPGESRCREGEGERRGQQQ*SPERTP Trigger: TGGGGTCCTTTCAGGGCTTCATTGTTGCTGTCCTCT...CCGTTCTCCTTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR GCA 90 bp | AGTCGAAGGTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGGGGCTACAATGGAGATaGTGTGGCCCGTGGTGTAGA | + |
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Preference number: 4 (lower is better) Translates to: SRRLIYGDLEKADAEKGKGLQWR*CGPWCR Trigger: TCTACACCACGGGCCACAGCATCTCCATTGTAGCCC...CTTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTTCGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CCA 90 bp | GTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGGAGAACGGACCAAAAAGCTGGTTTaGACCTGGGGGATGTGGAGG | + |
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Preference number: 4 (lower is better) Translates to: VDIRGPGESRCREGEGERTKKLV*TWGMWR Trigger: CCTCCACATCCCCCAGGTCCAAACCAGCTTTTTGGT...CCGTTCTCCTTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR TCA 90 bp | GTGATGATGGCTGGCCTAGCACTCAGAGGTCAGCACCTTCAATCTCGATCGGGGTCATCGTCTCTCAGCTaGGTGATGAAGTCACATTCT | + |
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Preference number: 4 (lower is better) Translates to: VMMAGLALRGQHLQSRSGSSSLS*VMKSHS Trigger: AGAATGTGACTTCATCACTCAGCTGAGAGACGATGA...CCCCGATCGAGATTGAAGGTGCTGACCTCTGAGTGCTAGGCCAGCCATCATCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR TCA 90 bp | AGAAAGTCGAAGGTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGCATGGTGGCCAAATGTaGGATGGCCACAGAGACCTT | + |
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Preference number: 4 (lower is better) Translates to: RKSKVDIRGPGESRCREGHGGQM*DGHRDL Trigger: AAGGTCTCTGTGGCCATCTCACATTTGGCCACCATG...CCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTTCGACTTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR GCA 90 bp | TTTCTCTGGGCCTTGGGCAATAGCCCTAGATGGGAAGAAAGAACAGATGGGAGCCAGGTAGACAGCTTCTaGCAACAGCCAGCTGAAGTT | + |
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Preference number: 4 (lower is better) Translates to: FLWALGNSPRWEERTDGSQVDSF*QQPAEV Trigger: AACTTCAGCTGGCTGTTGGCAGAAGCTGTCTACCTG...GCTCCCATCTGTTCTTTCTTCCCATCTAGGGCTATTGCCCAAGGCCCAGAGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CCA 90 bp | AAGTCGAAGGTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGCAAGCCACAGGGTATaGTGGGAAGGGATTAGACCA | + |
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Preference number: 4 (lower is better) Translates to: KSKVDIRGPGESRCREGEASHRV*WEGIRP Trigger: TGGTCTAATCCCTTCCCACCATACCCTGTGGCTTGC...TTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTTCGACTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CCA 90 bp | AGTCGAAGGTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGTGGCCAAATGTGAGATaGCCACAGAGACCTTGCACA | + |
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Preference number: 4 (lower is better) Translates to: SRRLIYGDLEKADAEKGKWPNVR*PQRPCT Trigger: TGTGCAAGGTCTCTGTGGCCATCTCACATTTGGCCA...CTTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTTCGACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR TCA 90 bp | GTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGGAGAACGGTCATCGTCTCTCAGCTaGGTGATGAAGTCACATTCT | + |
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Preference number: 4 (lower is better) Translates to: VDIRGPGESRCREGEGERSSSLS*VMKSHS Trigger: AGAATGTGACTTCATCACTCAGCTGAGAGACGATGA...CCGTTCTCCTTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR TCA 90 bp | CTCTGGGCCTTGGGCAATAGCCCTAGATGGGAAGAAAGAACAGATGGGAGCAGATATAAGGAGAAGTGTTaGCTTGGAAAGCCGCCAGTA | + |
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Preference number: 4 (lower is better) Translates to: LWALGNSPRWEERTDGSRYKEKC*LGKPPV Trigger: TACTGGCGGCTTTCCAAGTCAACACTTCTCCTTATA...TCTGCTCCCATCTGTTCTTTCTTCCCATCTAGGGCTATTGCCCAAGGCCCAGAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CCA 90 bp | GTTTATTGGTTTCTCTGGGCCTTGGGCAATAGCCCTAGATGGGAAGAAAGAACAAGCCACAGGGTATGGTaGGAAGGGATTAGACCAGCC | + |
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Preference number: 4 (lower is better) Translates to: VYWFLWALGNSPRWEERTSHRVW*EGIRPA Trigger: GGCTGGTCTAATCCCTTCCCACCATACCCTGTGGCT...TGTTCTTTCTTCCCATCTAGGGCTATTGCCCAAGGCCCAGAGAAACCAATAAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR TCA 90 bp | CCTTGTGATGATGGCTGGCCTAGCACTCAGAGGTCAGCACCTTCAATCTCGATCTATAAGGAGAAGTGTTaGCTTGGAAAGCCGCATGAA | + |
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Preference number: 4 (lower is better) Translates to: PCDDGWPSTQRSAPSISIYKEKC*LGKPHE Trigger: TTCATGCGGCTTTCCAAGTCAACACTTCTCCTTATA...GATCGAGATTGAAGGTGCTGACCTCTGAGTGCTAGGCCAGCCATCATCACAAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR CCA 90 bp | GTTTATTGGTTTCTCTGGGCCTTGGGCAATAGCCCTAGATGGGAAGAAAGAACAAGAAGTTCAGGGTCGTaGCCATACCATTTGCGTGAA | + |
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Preference number: 4 (lower is better) Translates to: VYWFLWALGNSPRWEERTRSSGS*PYHLRE Trigger: TTCACGCAAATGGTATGGCCACGACCCTGAACTTCT...TGTTCTTTCTTCCCATCTAGGGCTATTGCCCAAGGCCCAGAGAAACCAATAAAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CAA 90 bp | GTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTCAGGGTCGTGGCCATCCCAGGGAGGTGTaGTTGGTCCCCTCTGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: VWSTQCRSVELAEVQGRGHPREV*LVPSAA Trigger: GGCGGCAGAGGGGACCAACAACACCTCCCTGGGATG...GCCACGACCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR CAA 90 bp | CGGGGAGGTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTCAGGGAACACAGCACTGGCCTaGAGGATGAAGGTGGCAAAC | + |
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Preference number: 5 (lower is better) Translates to: RGGVVHSVQVRRAGRSSGNTALA*RMKVAN Trigger: GTTTGCCACCTTCATCCTCAAGGCCAGTGCTGTGTT...CCCTGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCCCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR CAA 90 bp | TCGATCGGGGAGGTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTTCCTCAAAAGCCAGTTaGCAGCCCACCCACGTACCA | + |
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Preference number: 5 (lower is better) Translates to: SIGEVWSTQCRSVELAEVSSKAS*QPTHVP Trigger: TGGTACGTGGGTGGGCTGCAAACTGGCTTTTGAGGA...AACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCCCGATCGA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS-3UTR CAA 90 bp | GATCGGGGAGGTGTGGTCCACTCAGTGCAGGTCCGTCGAGCTGGCAGAAGTTCAAGGACTATGGGTCCTTaGATGATCCACCAGCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: DRGGVVHSVQVRRAGRSSRTMGP*MIHQQG Trigger: CCCCTGCTGGTGGATCATCAAAGGACCCATAGTCCT...TGAACTTCTGCCAGCTCGACGGACCTGCACTGAGTGGACCACACCTCCCCGATC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000203241.2 |
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| CDS GCA 90 bp | CCAAATGTGAGATGGCCACAGAGACCTTGCACAGGACAGTGGACATaGTGCAGTGGTCCGTGCTATCCCCCTGGAAGATGGCGGCATCCT | + |
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Preference number: 5 (lower is better) Translates to: PNVRWPQRPCTGQWT*CSGPCYPPGRWRHP Trigger: AGGATGCCGCCATCTTCCAGGGGGATAGCACGGACCACTGCAGCATGTCCACTGTCCTGTGCAAGGTCTCTGTGGCCATCTCACATTTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS CCA 90 bp | TTGCACAGGACAGTGGACATGCTGCAGTGGTCCGTGCTATCCCCCTaGAAGATGGCGGCATCCTTCAAGAACACAGCACTGGCCTTGAGG | + |
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Preference number: 5 (lower is better) Translates to: LHRTVDMLQWSVLSP*KMAASFKNTALALR Trigger: CCTCAAGGCCAGTGCTGTGTTCTTGAAGGATGCCGCCATCTTCCAGGGGGATAGCACGGACCACTGCAGCATGTCCACTGTCCTGTGCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS GCA 90 bp | AATGTGAGATGGCCACAGAGACCTTGCACAGGACAGTGGACATGCTaGAGTGGTCCGTGCTATCCCCCTGGAAGATGGCGGCATCCTTCA | + |
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Preference number: 5 (lower is better) Translates to: NVRWPQRPCTGQWTC*SGPCYPPGRWRHPS Trigger: TGAAGGATGCCGCCATCTTCCAGGGGGATAGCACGGACCACTGCAGCATGTCCACTGTCCTGTGCAAGGTCTCTGTGGCCATCTCACATT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS-3UTR CAA 90 bp | GAGCAGATGCAGGAACTGAGAAAGTCGAAGGTTGATATACGGGGACCTGGAGAACATCCCAGGGAGGTGTaGTTGGTCCCCTCTGCCGCC | + |
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Preference number: 5 (lower is better) Translates to: EQMQELRKSKVDIRGPGEHPREV*LVPSAA Trigger: GGCGGCAGAGGGGACCAACAACACCTCCCTGGGATG...TTCTCCAGGTCCCCGTATATCAACCTTCGACTTTCTCAGTTCCTGCATCTGCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS TCA 90 bp | AGGCCAACAGGCAGCTCAGGTAGACAGCTTCTGCCAACAGCCAGCTaGAGTTGGTCATGGTGGCCAAATGTGAGATGGCCACAGAGACCT | + |
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Preference number: 5 (lower is better) Translates to: RPTGSSGRQLLPTAS*SWSWWPNVRWPQRP Trigger: AGGTCTCTGTGGCCATCTCACATTTGGCCACCATGACCAACTTCAGCTGGCTGTTGGCAGAAGCTGTCTACCTGAGCTGCCTGTTGGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS-3UTR CAA 90 bp | GTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGGAGAACGGATGGCCACAGAGACCTaGCACAGGACAGTGGACATG | + |
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Preference number: 5 (lower is better) Translates to: VDIRGPGESRCREGEGERMATET*HRTVDM Trigger: CATGTCCACTGTCCTGTGCAAGGTCTCTGTGGCCAT...CCGTTCTCCTTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CAA 90 bp | AGTCGAAGGTTGATATACGGGGACCTGGAGAAAGCAGATGCAGAGAAGGGGAAGTCCTCAAAAGCCAGTTaGCAGCCCACCCACGTACCA | + |
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Preference number: 5 (lower is better) Translates to: SRRLIYGDLEKADAEKGKSSKAS*QPTHVP Trigger: TGGTACGTGGGTGGGCTGCAAACTGGCTTTTGAGGA...CTTCCCCTTCTCTGCATCTGCTTTCTCCAGGTCCCCGTATATCAACCTTCGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS TCA 90 bp | CCACGCAGAGGGCTACAATGGAGATGCTGTGGCCCGTGGTGTAGATaGTCTTCACCGTGGAGAAGTACGATTTCTCCTTGGTTAACAGTT | + |
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Preference number: 5 (lower is better) Translates to: PRRGLQWRCCGPWCR*SSPWRSTISPWLTV Trigger: AACTGTTAACCAAGGAGAAATCGTACTTCTCCACGGTGAAGATCATCTACACCACGGGCCACAGCATCTCCATTGTAGCCCTCTGCGTGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS TCA 90 bp | CGCCTTGTGCAGGCTCCAGCTTCCTCAGCAGGATACAAATTATATTaGGAAACAGCCCAAAGTTCACCCCAACAGAGAGGACTATGGGTC | + |
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Preference number: 5 (lower is better) Translates to: RLVQAPASSAGYKLY*ETAQSSPQQRGLWV Trigger: GACCCATAGTCCTCTCTGTTGGGGTGAACTTTGGGCTGTTTCTCAATATAATTTGTATCCTGCTGAGGAAGCTGGAGCCTGCACAAGGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS-3UTR CAA 90 bp | TACAAGTTTATTGGTTTCTCTGGGCCTTGGGCAATAGCCCTAGATGGGAAGAAAAGGACTATGGGTCCTTaGATGATCCACCAGCAGGGG | + |
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Preference number: 5 (lower is better) Translates to: YKFIGFSGPWAIALDGKKRTMGP*MIHQQG Trigger: CCCCTGCTGGTGGATCATCAAAGGACCCATAGTCCT...TTTCTTCCCATCTAGGGCTATTGCCCAAGGCCCAGAGAAACCAATAAACTTGTA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS-3UTR CAA 90 bp | AAGTTTATTGGTTTCTCTGGGCCTTGGGCAATAGCCCTAGATGGGAAGAAAGAAAACACAGCACTGGCCTaGAGGATGAAGGTGGCAAAC | + |
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Preference number: 5 (lower is better) Translates to: KFIGFSGPWAIALDGKKENTALA*RMKVAN Trigger: GTTTGCCACCTTCATCCTCAAGGCCAGTGCTGTGTT...TTCTTTCTTCCCATCTAGGGCTATTGCCCAAGGCCCAGAGAAACCAATAAACTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS GCA 72 bp | CCCAGGGCATCCCAGGGAGGTGTTGTTGGTCCCCTCTaGCGCCTGAAGACATGCAAGCTCATCGTCTCTCAG | + |
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Preference number: 6 (lower is better) Translates to: PRASQGGVVGPL*RLKTCKLIVSQ Trigger: CTGAGAGACGATGAGCTTGCATGTCTTCAGGCGGCAGAGGGGACCAACAACACCTCCCTGGGATGCCCTGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS CCA 72 bp | ACAGAGACCTTGCACAGGACAGTGGACATGCTGCAGTaGTCCGTGCTATCCCCCTGGAAGATGGCGGCATCC | + |
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Preference number: 6 (lower is better) Translates to: TETLHRTVDMLQ*SVLSPWKMAAS Trigger: GGATGCCGCCATCTTCCAGGGGGATAGCACGGACCACTGCAGCATGTCCACTGTCCTGTGCAAGGTCTCTGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS CCA 72 bp | CAGTTCCAAGGGCACAGGGCAAGCCACAGGGTATGGTaGGAAGGGATTAGACCAGCCAGTGATGGTGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: QFQGHRASHRVW*EGIRPASDGAV Trigger: GACTGCACCATCACTGGCTGGTCTAATCCCTTCCCACCATACCCTGTGGCTTGCCCTGTGCCCTTGGAACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS CCA 72 bp | CCAGCCACCAAAAAGCTGGTTTGGACCTGGGGGATGTaGAGGCCAACAGGCAGCTCAGGTAGACAGCTTCTG | + |
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Preference number: 6 (lower is better) Translates to: PATKKLVWTWGM*RPTGSSGRQLL Trigger: CAGAAGCTGTCTACCTGAGCTGCCTGTTGGCCTCCACATCCCCCAGGTCCAAACCAGCTTTTTGGTGGCTGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS GCA 72 bp | TGTGGAGGCCAACAGGCAGCTCAGGTAGACAGCTTCTaGCAACAGCCAGCTGAAGTTGGTCATGGTGGCCAA | + |
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Preference number: 6 (lower is better) Translates to: CGGQQAAQVDSF*QQPAEVGHGGQ Trigger: TTGGCCACCATGACCAACTTCAGCTGGCTGTTGGCAGAAGCTGTCTACCTGAGCTGCCTGTTGGCCTCCACA 57% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS GCA 72 bp | CTAAGTCCCAGCACTCAGTGTCCTCAAAAGCCAGTTTaGAGCCCACCCACGTACCAGTGCATAGCACGGGGA | + |
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Preference number: 6 (lower is better) Translates to: LSPSTQCPQKPV*SPPTYQCIARG Trigger: TCCCCGTGCTATGCACTGGTACGTGGGTGGGCTGCAAACTGGCTTTTGAGGACACTGAGTGCTGGGACTTAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS CCA 72 bp | ACAGTGGACATGCTGCAGTGGTCCGTGCTATCCCCCTaGAAGATGGCGGCATCCTTCAAGAACACAGCACTG | + |
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Preference number: 6 (lower is better) Translates to: TVDMLQWSVLSP*KMAASFKNTAL Trigger: CAGTGCTGTGTTCTTGAAGGATGCCGCCATCTTCCAGGGGGATAGCACGGACCACTGCAGCATGTCCACTGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS CAA 72 bp | TCTAAGTCCCAGCACTCAGTGTCCTCAAAAGCCAGTTaGCAGCCCACCCACGTACCAGTGCATAGCACGGGG | + |
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Preference number: 6 (lower is better) Translates to: SKSQHSVSSKAS*QPTHVPVHSTG Trigger: CCCCGTGCTATGCACTGGTACGTGGGTGGGCTGCAAACTGGCTTTTGAGGACACTGAGTGCTGGGACTTAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS TCA 72 bp | GGCAGCTCAGGTAGACAGCTTCTGCCAACAGCCAGCTaGAGTTGGTCATGGTGGCCAAATGTGAGATGGCCA | + |
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Preference number: 6 (lower is better) Translates to: GSSGRQLLPTAS*SWSWWPNVRWP Trigger: TGGCCATCTCACATTTGGCCACCATGACCAACTTCAGCTGGCTGTTGGCAGAAGCTGTCTACCTGAGCTGCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS GCA 72 bp | GGAGGTGTTGTTGGTCCCCTCTGCCGCCTGAAGACATaGAAGCTCATCGTCTCTCAGCTGAGTGATGAAGTC | + |
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Preference number: 6 (lower is better) Translates to: GGVVGPLCRLKT*KLIVSQLSDEV Trigger: GACTTCATCACTCAGCTGAGAGACGATGAGCTTGCATGTCTTCAGGCGGCAGAGGGGACCAACAACACCTCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS TCA 72 bp | AGTGATGGTGCAGTCCCTCTTCACAAACCCTGTGTCTaGGCCGAAGTGAGAGAAGAATTCAGGGCAGGGGAG | + |
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Preference number: 6 (lower is better) Translates to: SDGAVPLHKPCV*AEVREEFRAGE Trigger: CTCCCCTGCCCTGAATTCTTCTCTCACTTCGGCTCAGACACAGGGTTTGTGAAGAGGGACTGCACCATCACT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS TCA 72 bp | GGGCTACAATGGAGATGCTGTGGCCCGTGGTGTAGATaGTCTTCACCGTGGAGAAGTACGATTTCTCCTTGG | + |
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Preference number: 6 (lower is better) Translates to: GLQWRCCGPWCR*SSPWRSTISPW Trigger: CCAAGGAGAAATCGTACTTCTCCACGGTGAAGATCATCTACACCACGGGCCACAGCATCTCCATTGTAGCCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS CAA 90 bp | CCGCCTTGTGCAGGCTCCAGCTTCCTCAGCAGGATACAAATTATATaGAGAAACAGCCCAAAGTTCACCCCAACAGAGAGGACTATGGGT | + |
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Preference number: 6 (lower is better) Translates to: PPCAGSSFLSRIQII*RNSPKFTPTERTMG Trigger: ACCCATAGTCCTCTCTGTTGGGGTGAACTTTGGGCTGTTTCTCAATATAATTTGTATCCTGCTGAGGAAGCTGGAGCCTGCACAAGGCGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000063578.6 ENSMUST00000203241.2 |
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| CDS TCA 72 bp | TGGCAGAAGTTCAGGGTCGTGGCCATACCATTTGCGTaGAATCTCTGTCCTCACCTCTTGATTGAGGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: WQKFRVVAIPFA*NLCPHLLIEEA Trigger: TGCTTCCTCAATCAAGAGGTGAGGACAGAGATTTCACGCAAATGGTATGGCCACGACCCTGAACTTCTGCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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| CDS TCA 72 bp | GTAATGAATTCCAAACAGCGGTATAAGGAGAAGTGTTaGCTTGGAAAGCCGCCAGTACTGAGCCCGTGTGTG | + |
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Preference number: 6 (lower is better) Translates to: VMNSKQRYKEKC*LGKPPVLSPCV Trigger: CACACACGGGCTCAGTACTGGCGGCTTTCCAAGTCAACACTTCTCCTTATACCGCTGTTTGGAATTCATTAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000063578.6 |
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