Pregenerated sensors for GH (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020713Ensembl transcript IDs: ENSMUST00000103071.4
Found 23 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | ACAAAGCGCAGGGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGGCAGGCAGAGCAGGCTaGCGGTCAGGAGCCAGGAGG | + |
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Preference number: 4 (lower is better) Translates to: TKRRGGSCQGAGRHRRVQAGRAG*RSGARR Trigger: CCTCCTGGCTCCTGACCGTCAGCCTGCTCTGCCTGC...CTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCCCTGCGCTTTGT 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR CCA 90 bp | CAAAGCGCAGGGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCCCTCCTCCTTGCCTGTaGGGGCCGGGATGGTCTCTG | + |
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Preference number: 4 (lower is better) Translates to: QSAGVAVARGQGGTGECSPPPCL*GPGWSL Trigger: CAGAGACCATCCCGGCCCCCACAGGCAAGGAGGAGG...GCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCCCTGCGCTTTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR GCA 90 bp | CAAAGCGCAGGGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCGCCCAACACGGGGGCTaGCATCTTCCAGCTCCTGCA | + |
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Preference number: 4 (lower is better) Translates to: QSAGVAVARGQGGTGECSAQHGG*HLPAPA Trigger: TGCAGGAGCTGGAAGATGGCAGCCCCCGTGTTGGGC...GCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCCCTGCGCTTTG 67% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR CCA 90 bp | GGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCAGAGACACTGGTGTCAGCAGCCAGCTaGTGCAGGTGCTGGGCTCGG | + |
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Preference number: 4 (lower is better) Translates to: GWQLPGGREAQESAAETLVSAAS*CRCWAR Trigger: CCGAGCCCAGCACCTGCACCAGCTGGCTGCTGACAC...CAGTGTCTCTGCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCC 67% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR GCA 90 bp | CAAAGCGCAGGGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCATCCTGCTGAGGAACTaGACGGGCCCCAGCCATGAC | + |
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Preference number: 4 (lower is better) Translates to: QSAGVAVARGQGGTGECSILLRN*TGPSHD Trigger: GTCATGGCTGGGGCCCGTGCAGTTCCTCAGCAGGAT...GCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCCCTGCGCTTTG 66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR TCA 90 bp | GGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCAGAGACACTGGGCCGGGATGGTCTCTaGGAAGCAGAAAGCAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: GWQLPGGREAQESAAETLGRDGL*EAESSL Trigger: CAGGCTGCTTTCTGCTTCTCAGAGACCATCCCGGCC...CAGTGTCTCTGCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR CCA 90 bp | GGACAAAGCGCAGGGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCTCCTGCATCAGAGCCTaGATGCCCTCTTCCAGGTCC | + |
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Preference number: 4 (lower is better) Translates to: GQSAGVAVARGQGGTGECSCIRA*MPSSRS Trigger: GGACCTGGAAGAGGGCATCCAGGCTCTGATGCAGGA...GCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCCCTGCGCTTTGTCC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR TCA 90 bp | AGGGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCAGAGACACCCAGCCATGACTGGATaGGCAGCAGCGAGAAGCGAA | + |
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Preference number: 4 (lower is better) Translates to: RGGSCQGAGRHRRVQQRHPAMTG*AAARSE Trigger: TTCGCTTCTCGCTGCTGCTCATCCAGTCATGGCTGG...GTGTCTCTGCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCCCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR GCA 90 bp | GGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCAGAGACACTGCCATCTTCCAGCTCCTaGATCAGAGCCTGGATGCCC | + |
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Preference number: 4 (lower is better) Translates to: GWQLPGGREAQESAAETLPSSSS*IRAWMP Trigger: GGGCATCCAGGCTCTGATGCAGGAGCTGGAAGATGG...CAGTGTCTCTGCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR CCA 90 bp | ACAAAGCGCAGGGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCTGTGGGGGCCGGGATaGTCTCTGAGAAGCAGAAAG | + |
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Preference number: 4 (lower is better) Translates to: TKRRGGSCQGAGRHRRVQLWGPG*SLRSRK Trigger: CTTTCTGCTTCTCAGAGACCATCCCGGCCCCCACAG...CTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCCCTGCGCTTTGT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR TCA 90 bp | GGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCAGAGACACTGTGTGCAGGTCCTTCTTaGAGCAGGAGAGCAGCCCAT | + |
|
Preference number: 4 (lower is better) Translates to: GWQLPGGREAQESAAETLCAGPS*SRRAAH Trigger: ATGGGCTGCTCTCCTGCTTCAAGAAGGACCTGCACA...CAGTGTCTCTGCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR GCA 90 bp | GGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCAGAGACACTGGCATCAGAGCCTGGATaGCCTCTTCCAGGTCCTTCA | + |
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Preference number: 4 (lower is better) Translates to: GWQLPGGREAQESAAETLASEPG*PLPGPS Trigger: TGAAGGACCTGGAAGAGGGCATCCAGGCTCTGATGC...CAGTGTCTCTGCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR TCA 90 bp | ACAAAGCGCAGGGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGTGTCATAGGTTTGCTTaGGGATCTGCCCAACACGGG | + |
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Preference number: 4 (lower is better) Translates to: TKRRGGSCQGAGRHRRVQCHRFA*GSAQHG Trigger: CCCGTGTTGGGCAGATCCTCAAGCAAACCTATGACA...CTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCCCTGCGCTTTGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR CAA 90 bp | GCAGGGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCAGAGACTGCTGGGCCTCCTCCTaGCCTGTGGGGGCCGGGATG | + |
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Preference number: 5 (lower is better) Translates to: AGVAVARGQGGTGECSRDCWASS*PVGAGM Trigger: CATCCCGGCCCCCACAGGCAAGGAGGAGGCCCAGCA...GTCTCTGCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCCCTGC 70% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR CAA 90 bp | AGCGCAGGGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCAGATTGTGCAGGTCCTTCTaGAAGCAGGAGAGCAGCCCA | + |
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Preference number: 5 (lower is better) Translates to: SAGVAVARGQGGTGECSRLCRSF*KQESSP Trigger: TGGGCTGCTCTCCTGCTTCAAGAAGGACCTGCACAA...TCTGCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCCCTGCGCT 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS-3UTR CAA 90 bp | GCAGGGGTGGCAGTTGCCAGGGGGCAGGGAGGCACAGGAGAGTGCAGCAGAGACCCGAACATCAGGCTGTaGGTGAAAATCCTGCTGAGG | + |
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Preference number: 5 (lower is better) Translates to: AGVAVARGQGGTGECSRDPNIRL*VKILLR Trigger: CCTCAGCAGGATTTTCACCAACAGCCTGATGTTCGG...GTCTCTGCTGCACTCTCCTGTGCCTCCCTGCCCCCTGGCAACTGCCACCCCTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS GCA 90 bp | TGGATGAGCAGCAGCGAGAAGCGAAGCAATTCCATGTCGGTTCTCTaGTGGGCCTCCTCCTTGCCTGTGGGGGCCGGGATGGTCTCTGAG | + |
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Preference number: 5 (lower is better) Translates to: WMSSSEKRSNSMSVL*WASSLPVGAGMVSE Trigger: CTCAGAGACCATCCCGGCCCCCACAGGCAAGGAGGAGGCCCAGCAGAGAACCGACATGGAATTGCTTCGCTTCTCGCTGCTGCTCATCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS TCA 90 bp | TCTCTGCTGGGCCTCCTCCTTGCCTGTGGGGGCCGGGATGGTCTCTaGGAAGCAGAAAGCAGCCTGGGCATTCTGAATGGAATAGCGCTG | + |
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Preference number: 5 (lower is better) Translates to: SLLGLLLACGGRDGL*EAESSLGILNGIAL Trigger: CAGCGCTATTCCATTCAGAATGCCCAGGCTGCTTTCTGCTTCTCAGAGACCATCCCGGCCCCCACAGGCAAGGAGGAGGCCCAGCAGAGA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS CCA 90 bp | ATGAGCAGCAGCGAGAAGCGAAGCAATTCCATGTCGGTTCTCTGCTaGGCCTCCTCCTTGCCTGTGGGGGCCGGGATGGTCTCTGAGAAG | + |
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Preference number: 5 (lower is better) Translates to: MSSSEKRSNSMSVLC*ASSLPVGAGMVSEK Trigger: CTTCTCAGAGACCATCCCGGCCCCCACAGGCAAGGAGGAGGCCCAGCAGAGAACCGACATGGAATTGCTTCGCTTCTCGCTGCTGCTCAT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS GCA 72 bp | AGCAGCGAGAAGCGAAGCAATTCCATGTCGGTTCTCTaGTGGGCCTCCTCCTTGCCTGTGGGGGCCGGGATG | + |
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Preference number: 6 (lower is better) Translates to: SSEKRSNSMSVL*WASSLPVGAGM Trigger: CATCCCGGCCCCCACAGGCAAGGAGGAGGCCCAGCAGAGAACCGACATGGAATTGCTTCGCTTCTCGCTGCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS TCA 72 bp | GGCCTCCTCCTTGCCTGTGGGGGCCGGGATGGTCTCTaGGAAGCAGAAAGCAGCCTGGGCATTCTGAATGGA | + |
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Preference number: 6 (lower is better) Translates to: GLLLACGGRDGL*EAESSLGILNG Trigger: TCCATTCAGAATGCCCAGGCTGCTTTCTGCTTCTCAGAGACCATCCCGGCCCCCACAGGCAAGGAGGAGGCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS CAA 90 bp | GAGAAGCGAAGCAATTCCATGTCGGTTCTCTGCTGGGCCTCCTCCTaGCCTGTGGGGGCCGGGATGGTCTCTGAGAAGCAGAAAGCAGCC | + |
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Preference number: 6 (lower is better) Translates to: EKRSNSMSVLCWASS*PVGAGMVSEKQKAA Trigger: GGCTGCTTTCTGCTTCTCAGAGACCATCCCGGCCCCCACAGGCAAGGAGGAGGCCCAGCAGAGAACCGACATGGAATTGCTTCGCTTCTC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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| CDS CCA 72 bp | TCTCTGAGAAGCAGAAAGCAGCCTGGGCATTCTGAATaGAATAGCGCTGTCCCTCGGGAATGTAGGCACGCT | + |
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Preference number: 6 (lower is better) Translates to: SLRSRKQPGHSE*NSAVPRECRHA Trigger: AGCGTGCCTACATTCCCGAGGGACAGCGCTATTCCATTCAGAATGCCCAGGCTGCTTTCTGCTTCTCAGAGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000103071.4 |
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