RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GGH (Mus musculus)

Ensembl gene IDs: ENSMUSG00000073987

Ensembl transcript IDs: ENSMUST00000098242.4

Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TACTCTATTTCTGGGGCTGAAGCAATGGATTGGCAGTCAAGAACGTaGACTGCTCTTGCAGACAGAGGGCCCAAGGTCAATTTCAAGCAC +
Preference number: 1 (lower is better)
Translates to: YSISGAEAMDWQSRT*TALADRGPKVNFKH
Trigger: GTGCTTGAAATTGACCTTGGGCCCTCTGTCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCATTGCTTCAGCCCCAGAAATAGAGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
3UTR TCA 90 bp CCAGGCACACAGCAAAGATATCTGTGTGGCTTTCTCATACTGCCCTaGGCTGTGTTAGCAATTCAATCACAGAATTACTCAAAGCTGCTG +
Preference number: 1 (lower is better)
Translates to: PGTQQRYLCGFLILP*AVLAIQSQNYSKLL
Trigger: CAGCAGCTTTGAGTAATTCTGTGATTGAATTGCTAACACAGCTCAGGGCAGTATGAGAAAGCCACACAGATATCTTTGCTGTGTGCCTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
3UTR TCA 90 bp AAGCACCATTTATTAGACACAAACCAAATACTCTATTTCTGGGGCTaGAGCAATGGATTGGCAGTCAAGAACGTGAACTGCTCTTGCAGA +
Preference number: 1 (lower is better)
Translates to: KHHLLDTNQILYFWG*SNGLAVKNVNCSCR
Trigger: TCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCATTGCTTCAGCCCCAGAAATAGAGTATTTGGTTTGTGTCTAATAAATGGTGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
3UTR CAA 90 bp CTGGGGCTGAAGCAATGGATTGGCAGTCAAGAACGTGAACTGCTCTaGCAGACAGAGGGCCCAAGGTCAATTTCAAGCACCCATGTCAGT +
Preference number: 2 (lower is better)
Translates to: LGLKQWIGSQERELL*QTEGPRSISSTHVS
Trigger: ACTGACATGGGTGCTTGAAATTGACCTTGGGCCCTCTGTCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCATTGCTTCAGCCCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
3UTR-3UTR TCA 90 bp CTGCTCTTGCAGACAGAGGGCCCAAGGTCAATTTCAAGCACCCATGTCAGTGGACTCCTGACACCCAAATaGAGACATAATAGGTACCTG +
Preference number: 2 (lower is better)
Translates to: LLLQTEGPRSISSTHVSGLLTPK*RHNRYL
Trigger: CAGGTACCTATTATGTCTTCATTTGGGTGTCAGGAG...TCCACTGACATGGGTGCTTGAAATTGACCTTGGGCCCTCTGTCTGCAAGAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
3UTR-3UTR CCA 90 bp CTGCTCTTGCAGACAGAGGGCCCAAGGTCAATTTCAAGCACCCATGTCAGTGGAGCAAAGATATCTGTGTaGCTTTCTCATACTGCCCTG +
Preference number: 2 (lower is better)
Translates to: LLLQTEGPRSISSTHVSGAKISV*LSHTAL
Trigger: CAGGGCAGTATGAGAAAGCCACACAGATATCTTTGC...TCCACTGACATGGGTGCTTGAAATTGACCTTGGGCCCTCTGTCTGCAAGAGCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
3UTR-3UTR TCA 90 bp TCATTTTACAAGAAGCCACTAGAATTTCTTGAAAGTCTAGTTACATGTGGCAGAATGCACACATACTCCTaGCACCCAAATGAAGACATA +
Preference number: 2 (lower is better)
Translates to: SFYKKPLEFLESLVTCGRMHTYS*HPNEDI
Trigger: TATGTCTTCATTTGGGTGTCAGGAGTATGTGTGCAT...TCTGCCACATGTAACTAGACTTTCAAGAAATTCTAGTGGCTTCTTGTAAAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
3UTR TCA 72 bp TCTGGGGCTGAAGCAATGGATTGGCAGTCAAGAACGTaGACTGCTCTTGCAGACAGAGGGCCCAAGGTCAAT +
Preference number: 3 (lower is better)
Translates to: SGAEAMDWQSRT*TALADRGPKVN
Trigger: ATTGACCTTGGGCCCTCTGTCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCATTGCTTCAGCCCCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
3UTR GCA 72 bp AGCAATGGATTGGCAGTCAAGAACGTGAACTGCTCTTaGAGACAGAGGGCCCAAGGTCAATTTCAAGCACCC +
Preference number: 3 (lower is better)
Translates to: SNGLAVKNVNCS*RQRAQGQFQAP
Trigger: GGGTGCTTGAAATTGACCTTGGGCCCTCTGTCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCATTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
3UTR CCA 72 bp GGAATCAGAACCAGGCACACAGCAAAGATATCTGTGTaGCTTTCTCATACTGCCCTGAGCTGTGTTAGCAAT +
Preference number: 3 (lower is better)
Translates to: GIRTRHTAKISV*LSHTALSCVSN
Trigger: ATTGCTAACACAGCTCAGGGCAGTATGAGAAAGCCACACAGATATCTTTGCTGTGTGCCTGGTTCTGATTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR GCA 90 bp AGCAATGGATTGGCAGTCAAGAACGTGAACTGCTCTTGCAGACAGAGGGCCCAAGCTGCTTTCTCAGGATaGCACTGGACAGCATACACT +
Preference number: 4 (lower is better)
Translates to: SNGLAVKNVNCSCRQRAQAAFSG*HWTAYT
Trigger: AGTGTATGCTGTCCAGTGGCATCCTGAGAAAGCAGC...TTGGGCCCTCTGTCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCATTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR CCA 90 bp AGCAATGGATTGGCAGTCAAGAACGTGAACTGCTCTTGCAGACAGAGGGCCCAACATGGTTGTAGGGTCTaGACATCCCGGGACTTGAAA +
Preference number: 4 (lower is better)
Translates to: SNGLAVKNVNCSCRQRAQHGCRV*TSRDLK
Trigger: TTTCAAGTCCCGGGATGTCCAGACCCTACAACCATG...TTGGGCCCTCTGTCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCATTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR CCA 90 bp TGGATTGGCAGTCAAGAACGTGAACTGCTCTTGCAGACAGAGGGCCCAAGGTCAAGTCTTCACAGCATTTaGTGCATGAGAAATGCCGCC +
Preference number: 4 (lower is better)
Translates to: WIGSQERELLLQTEGPRSSLHSI*CMRNAA
Trigger: GGCGGCATTTCTCATGCACCAAATGCTGTGAAGACT...TGACCTTGGGCCCTCTGTCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR CCA 90 bp CTGCTCTTGCAGACAGAGGGCCCAAGGTCAATTTCAAGCACCCATGTCAGTGGACCCCACACAGGAAAATaGTCTCCATTATCAAAGCTC +
Preference number: 4 (lower is better)
Translates to: LLLQTEGPRSISSTHVSGPHTGK*SPLSKL
Trigger: GAGCTTTGATAATGGAGACCATTTTCCTGTGTGGGG...TCCACTGACATGGGTGCTTGAAATTGACCTTGGGCCCTCTGTCTGCAAGAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
3UTR CAA 72 bp AAGCAATGGATTGGCAGTCAAGAACGTGAACTGCTCTaGCAGACAGAGGGCCCAAGGTCAATTTCAAGCACC +
Preference number: 4 (lower is better)
Translates to: KQWIGSQERELL*QTEGPRSISST
Trigger: GGTGCTTGAAATTGACCTTGGGCCCTCTGTCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCATTGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR TCA 90 bp TGGATTGGCAGTCAAGAACGTGAACTGCTCTTGCAGACAGAGGGCCCAAGGTCAAAATCCTTCCATGGATaGAATGAACTCAGTTTTGCC +
Preference number: 4 (lower is better)
Translates to: WIGSQERELLLQTEGPRSKSFHG*NELSFA
Trigger: GGCAAAACTGAGTTCATTTCATCCATGGAAGGATTT...TGACCTTGGGCCCTCTGTCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR TCA 90 bp AGCCAGGAATCAGAACCAGGCACACAGCAAAGATATCTGTGTGGCTTTCTCATAACAGCATTTGGTGCATaGGAAATGCCGCCCAGATTC +
Preference number: 4 (lower is better)
Translates to: SQESEPGTQQRYLCGFLITAFGA*EMPPRF
Trigger: GAATCTGGGCGGCATTTCTCATGCACCAAATGCTGT...TATGAGAAAGCCACACAGATATCTTTGCTGTGTGCCTGGTTCTGATTCCTGGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR GCA 90 bp AACCAGGCACACAGCAAAGATATCTGTGTGGCTTTCTCATACTGCCCTGAGCTGAAGTTCTTCATACTCTaGATCACTAAGATCGGGCCT +
Preference number: 4 (lower is better)
Translates to: NQAHSKDICVAFSYCPELKFFIL*ITKIGP
Trigger: AGGCCCGATCTTAGTGATGCAGAGTATGAAGAACTT...CAGCTCAGGGCAGTATGAGAAAGCCACACAGATATCTTTGCTGTGTGCCTGGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR CCA 90 bp AACCAGGCACACAGCAAAGATATCTGTGTGGCTTTCTCATACTGCCCTGAGCTGCTGGACAGCATACACTaGATACTTAAATCCTTCCAT +
Preference number: 4 (lower is better)
Translates to: NQAHSKDICVAFSYCPELLDSIH*ILKSFH
Trigger: ATGGAAGGATTTAAGTATCCAGTGTATGCTGTCCAG...CAGCTCAGGGCAGTATGAGAAAGCCACACAGATATCTTTGCTGTGTGCCTGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR TCA 90 bp AGCCAGGAATCAGAACCAGGCACACAGCAAAGATATCTGTGTGGCTTTCTCATATCTCTAGAGCCTTGCTaGAAAATATTTTGGCCACTC +
Preference number: 4 (lower is better)
Translates to: SQESEPGTQQRYLCGFLISLEPC*KIFWPL
Trigger: GAGTGGCCAAAATATTTTTCAGCAAGGCTCTAGAGA...TATGAGAAAGCCACACAGATATCTTTGCTGTGTGCCTGGTTCTGATTCCTGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR TCA 90 bp AGCCAGGAATCAGAACCAGGCACACAGCAAAGATATCTGTGTGGCTTTCTCATACTTCCATGGATGAAATaGACTCAGTTTTGCCATCTG +
Preference number: 4 (lower is better)
Translates to: SQESEPGTQQRYLCGFLILPWMK*TQFCHL
Trigger: CAGATGGCAAAACTGAGTTCATTTCATCCATGGAAG...TATGAGAAAGCCACACAGATATCTTTGCTGTGTGCCTGGTTCTGATTCCTGGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR GCA 90 bp GGGCCACAGGAAGTCGAGCAAACAACCAGAAATAAGGGTATAAATGTTTTTCAACTTCACAGCATTTGGTaGATGAGAAATGCCGCCCAG +
Preference number: 4 (lower is better)
Translates to: GPQEVEQTTRNKGINVFQLHSIW*MRNAAQ
Trigger: CTGGGCGGCATTTCTCATGCACCAAATGCTGTGAAG...TTGAAAAACATTTATACCCTTATTTCTGGTTGTTTGCTCGACTTCCTGTGGCCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR GCA 90 bp GGGCCACAGGAAGTCGAGCAAACAACCAGAAATAAGGGTATAAATGTTTTTCAATTGGTGCATGAGAAATaGCGCCCAGATTCTTCCACT +
Preference number: 4 (lower is better)
Translates to: GPQEVEQTTRNKGINVFQLVHEK*RPDSST
Trigger: AGTGGAAGAATCTGGGCGGCATTTCTCATGCACCAA...TTGAAAAACATTTATACCCTTATTTCTGGTTGTTTGCTCGACTTCCTGTGGCCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR TCA 90 bp GGGCCACAGGAAGTCGAGCAAACAACCAGAAATAAGGGTATAAATGTTTTTCAAGAGAGGCTCCATTTGTaGAAATTTGCGGTCAGATTT +
Preference number: 4 (lower is better)
Translates to: GPQEVEQTTRNKGINVFQERLHL*KFAVRF
Trigger: AAATCTGACCGCAAATTTTCACAAATGGAGCCTCTC...TTGAAAAACATTTATACCCTTATTTCTGGTTGTTTGCTCGACTTCCTGTGGCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR GCA 90 bp GGGCCACAGGAAGTCGAGCAAACAACCAGAAATAAGGGTATAAATGTTTTTCAACATTCTGCTCTTCCTTaGACCTTCAGTGAAGTTCAA +
Preference number: 4 (lower is better)
Translates to: GPQEVEQTTRNKGINVFQHSALP*TFSEVQ
Trigger: TTGAACTTCACTGAAGGTGCAAGGAAGAGCAGAATG...TTGAAAAACATTTATACCCTTATTTCTGGTTGTTTGCTCGACTTCCTGTGGCCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR GCA 90 bp TCATTTTACAAGAAGCCACTAGAATTTCTTGAAAGTCTAGTTACATGTGGCAGACTTCCACTCAAATGCTaGTTTCTCAGGATGCCACTG +
Preference number: 4 (lower is better)
Translates to: SFYKKPLEFLESLVTCGRLPLKC*FLRMPL
Trigger: CAGTGGCATCCTGAGAAAGCAGCATTTGAGTGGAAG...TCTGCCACATGTAACTAGACTTTCAAGAAATTCTAGTGGCTTCTTGTAAAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR TCA 90 bp TCATTTTACAAGAAGCCACTAGAATTTCTTGAAAGTCTAGTTACATGTGGCAGATCCTTGCACCTTCAGTaGAGTTCAAGGGCAATTTCT +
Preference number: 4 (lower is better)
Translates to: SFYKKPLEFLESLVTCGRSLHLQ*SSRAIS
Trigger: AGAAATTGCCCTTGAACTTCACTGAAGGTGCAAGGA...TCTGCCACATGTAACTAGACTTTCAAGAAATTCTAGTGGCTTCTTGTAAAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR GCA 90 bp TCATTTTACAAGAAGCCACTAGAATTTCTTGAAAGTCTAGTTACATGTGGCAGACTTGTAAATCAAGGATaGCGTCTCCTTAACCACGTT +
Preference number: 4 (lower is better)
Translates to: SFYKKPLEFLESLVTCGRLVNQG*RLLNHV
Trigger: AACGTGGTTAAGGAGACGGCATCCTTGATTTACAAG...TCTGCCACATGTAACTAGACTTTCAAGAAATTCTAGTGGCTTCTTGTAAAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR GCA 90 bp TCATTTTACAAGAAGCCACTAGAATTTCTTGAAAGTCTAGTTACATGTGGCAGAATACTTCACATAGGATaGAGCAATGTAGTAGTTTCC +
Preference number: 4 (lower is better)
Translates to: SFYKKPLEFLESLVTCGRILHIG*SNVVVS
Trigger: GGAAACTACTACATTGCTGCATCCTATGTGAAGTAT...TCTGCCACATGTAACTAGACTTTCAAGAAATTCTAGTGGCTTCTTGTAAAATGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS TCA 90 bp CCAACTTCGCCATTTTCCCAAAACATTCTTGCATTACTACTCCGATaGTGGGCCTCTCGGAGCCATGGTTGTAGGGTCTGGACATCCCGG +
Preference number: 5 (lower is better)
Translates to: PTSPFSQNILALLLR*WASRSHGCRVWTSR
Trigger: CCGGGATGTCCAGACCCTACAACCATGGCTCCGAGAGGCCCATCATCGGAGTAGTAATGCAAGAATGTTTTGGGAAAATGGCGAAGTTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR CAA 90 bp TGGATTGGCAGTCAAGAACGTGAACTGCTCTTGCAGACAGAGGGCCCAAGGTCAAAGTCTTCACAGCATTaGGTGCATGAGAAATGCCGC +
Preference number: 5 (lower is better)
Translates to: WIGSQERELLLQTEGPRSKSSQH*VHEKCR
Trigger: GCGGCATTTCTCATGCACCAAATGCTGTGAAGACTT...TGACCTTGGGCCCTCTGTCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 90 bp AGCATTTGGTGCATGAGAAATGCCGCCCAGATTCTTCCACTCAAATaGTGCTTTCTCAGGATGCCACTGGACAGCATACACTGGATACTT +
Preference number: 5 (lower is better)
Translates to: SIWCMRNAAQILPLK*CFLRMPLDSIHWIL
Trigger: AAGTATCCAGTGTATGCTGTCCAGTGGCATCCTGAGAAAGCAGCATTTGAGTGGAAGAATCTGGGCGGCATTTCTCATGCACCAAATGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR CAA 90 bp AGCAATGGATTGGCAGTCAAGAACGTGAACTGCTCTTGCAGACAGAGGGCCCAAAAGCTCTCTAGAGCCTaGCTGAAAAATATTTTGGCC +
Preference number: 5 (lower is better)
Translates to: SNGLAVKNVNCSCRQRAQKLSRA*LKNILA
Trigger: GGCCAAAATATTTTTCAGCAAGGCTCTAGAGAGCTT...TTGGGCCCTCTGTCTGCAAGAGCAGTTCACGTTCTTGACTGCCAATCCATTGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 90 bp GAAATGCCGCCCAGATTCTTCCACTCAAATGCTGCTTTCTCAGGATaGCACTGGACAGCATACACTGGATACTTAAATCCTTCCATGGAT +
Preference number: 5 (lower is better)
Translates to: EMPPRFFHSNAAFSG*HWTAYTGYLNPSMD
Trigger: ATCCATGGAAGGATTTAAGTATCCAGTGTATGCTGTCCAGTGGCATCCTGAGAAAGCAGCATTTGAGTGGAAGAATCTGGGCGGCATTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 90 bp CTGCTAAGTAGAATGAAGTCTTCACAGCATTTGGTGCATGAGAAATaGCGCCCAGATTCTTCCACTCAAATGCTGCTTTCTCAGGATGCC +
Preference number: 5 (lower is better)
Translates to: LLSRMKSSQHLVHEK*RPDSSTQMLLSQDA
Trigger: GGCATCCTGAGAAAGCAGCATTTGAGTGGAAGAATCTGGGCGGCATTTCTCATGCACCAAATGCTGTGAAGACTTCATTCTACTTAGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS CCA 90 bp CCGCCCAGATTCTTCCACTCAAATGCTGCTTTCTCAGGATGCCACTaGACAGCATACACTGGATACTTAAATCCTTCCATGGATGAAATG +
Preference number: 5 (lower is better)
Translates to: PPRFFHSNAAFSGCH*TAYTGYLNPSMDEM
Trigger: CATTTCATCCATGGAAGGATTTAAGTATCCAGTGTATGCTGTCCAGTGGCATCCTGAGAAAGCAGCATTTGAGTGGAAGAATCTGGGCGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR CAA 90 bp CTGCTCTTGCAGACAGAGGGCCCAAGGTCAATTTCAAGCACCCATGTCAGTGGAGAAATGAACTCAGTTTaGCCATCTGTATTGGTTGTT +
Preference number: 5 (lower is better)
Translates to: LLLQTEGPRSISSTHVSGEMNSV*PSVLVV
Trigger: AACAACCAATACAGATGGCAAAACTGAGTTCATTTC...TCCACTGACATGGGTGCTTGAAATTGACCTTGGGCCCTCTGTCTGCAAGAGCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 90 bp GGGCACAACTCGTGCACCTGCAGACTCTATATACTTCACATAGGATaGAGCAATGTAGTAGTTTCCCAACTTCGCCATTTTCCCAAAACA +
Preference number: 5 (lower is better)
Translates to: GHNSCTCRLYILHIG*SNVVVSQLRHFPKT
Trigger: TGTTTTGGGAAAATGGCGAAGTTGGGAAACTACTACATTGCTGCATCCTATGTGAAGTATATAGAGTCTGCAGGTGCACGAGTTGTGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 90 bp TTCATACTCTGCATCACTAAGATCGGGCCTTATGGGCACAACTCGTaGACCTGCAGACTCTATATACTTCACATAGGATGCAGCAATGTA +
Preference number: 5 (lower is better)
Translates to: FILCITKIGPYGHNS*TCRLYILHIGCSNV
Trigger: TACATTGCTGCATCCTATGTGAAGTATATAGAGTCTGCAGGTGCACGAGTTGTGCCCATAAGGCCCGATCTTAGTGATGCAGAGTATGAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 90 bp ATTTGGTGCATGAGAAATGCCGCCCAGATTCTTCCACTCAAATGCTaGTTTCTCAGGATGCCACTGGACAGCATACACTGGATACTTAAA +
Preference number: 5 (lower is better)
Translates to: IWCMRNAAQILPLKC*FLRMPLDSIHWILK
Trigger: TTTAAGTATCCAGTGTATGCTGTCCAGTGGCATCCTGAGAAAGCAGCATTTGAGTGGAAGAATCTGGGCGGCATTTCTCATGCACCAAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 90 bp AGGAAGGAGAACTCCATTAATAGATCTAAAAAGTTCTTCATACTCTaGATCACTAAGATCGGGCCTTATGGGCACAACTCGTGCACCTGC +
Preference number: 5 (lower is better)
Translates to: RKENSINRSKKFFIL*ITKIGPYGHNSCTC
Trigger: GCAGGTGCACGAGTTGTGCCCATAAGGCCCGATCTTAGTGATGCAGAGTATGAAGAACTTTTTAGATCTATTAATGGAGTTCTCCTTCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS-3UTR CAA 90 bp TCATTTTACAAGAAGCCACTAGAATTTCTTGAAAGTCTAGTTACATGTGGCAGATTTCCCAAAACATTCTaGCATTACTACTCCGATGAT +
Preference number: 5 (lower is better)
Translates to: SFYKKPLEFLESLVTCGRFPKTF*HYYSDD
Trigger: ATCATCGGAGTAGTAATGCAAGAATGTTTTGGGAAA...TCTGCCACATGTAACTAGACTTTCAAGAAATTCTAGTGGCTTCTTGTAAAATGA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 72 bp ATGAGAAATGCCGCCCAGATTCTTCCACTCAAATGCTaGTTTCTCAGGATGCCACTGGACAGCATACACTGG +
Preference number: 6 (lower is better)
Translates to: MRNAAQILPLKC*FLRMPLDSIHW
Trigger: CCAGTGTATGCTGTCCAGTGGCATCCTGAGAAAGCAGCATTTGAGTGGAAGAATCTGGGCGGCATTTCTCAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 72 bp TGCATCACTAAGATCGGGCCTTATGGGCACAACTCGTaGACCTGCAGACTCTATATACTTCACATAGGATGC +
Preference number: 6 (lower is better)
Translates to: CITKIGPYGHNS*TCRLYILHIGC
Trigger: GCATCCTATGTGAAGTATATAGAGTCTGCAGGTGCACGAGTTGTGCCCATAAGGCCCGATCTTAGTGATGCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS CAA 72 bp GTAGTTTCCCAACTTCGCCATTTTCCCAAAACATTCTaGCATTACTACTCCGATGATGGGCCTCTCGGAGCC +
Preference number: 6 (lower is better)
Translates to: VVSQLRHFPKTF*HYYSDDGPLGA
Trigger: GGCTCCGAGAGGCCCATCATCGGAGTAGTAATGCAAGAATGTTTTGGGAAAATGGCGAAGTTGGGAAACTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS CCA 72 bp TCCTCAAATCCAAGGCATGTTCCCCACACAGGAAAATaGTCTCCATTATCAAAGCTCTCTAGAGCCTTGCTG +
Preference number: 6 (lower is better)
Translates to: SSNPRHVPHTGK*SPLSKLSRALL
Trigger: CAGCAAGGCTCTAGAGAGCTTTGATAATGGAGACCATTTTCCTGTGTGGGGAACATGCCTTGGATTTGAGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 72 bp CCCAGATTCTTCCACTCAAATGCTGCTTTCTCAGGATaGCACTGGACAGCATACACTGGATACTTAAATCCT +
Preference number: 6 (lower is better)
Translates to: PRFFHSNAAFSG*HWTAYTGYLNP
Trigger: AGGATTTAAGTATCCAGTGTATGCTGTCCAGTGGCATCCTGAGAAAGCAGCATTTGAGTGGAAGAATCTGGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 72 bp AGAATGAAGTCTTCACAGCATTTGGTGCATGAGAAATaGCGCCCAGATTCTTCCACTCAAATGCTGCTTTCT +
Preference number: 6 (lower is better)
Translates to: RMKSSQHLVHEK*RPDSSTQMLLS
Trigger: AGAAAGCAGCATTTGAGTGGAAGAATCTGGGCGGCATTTCTCATGCACCAAATGCTGTGAAGACTTCATTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS CCA 72 bp TTCTTCCACTCAAATGCTGCTTTCTCAGGATGCCACTaGACAGCATACACTGGATACTTAAATCCTTCCATG +
Preference number: 6 (lower is better)
Translates to: FFHSNAAFSGCH*TAYTGYLNPSM
Trigger: CATGGAAGGATTTAAGTATCCAGTGTATGCTGTCCAGTGGCATCCTGAGAAAGCAGCATTTGAGTGGAAGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS TCA 72 bp AAGGATGCCGTCTCCTTAACCACGTTCTCAAAGTGGTaGCTGTTCTTCCGAGCTTCAGAAACTAAAAATTCT +
Preference number: 6 (lower is better)
Translates to: KDAVSLTTFSKW*LFFRASETKNS
Trigger: AGAATTTTTAGTTTCTGAAGCTCGGAAGAACAGTCACCACTTTGAGAACGTGGTTAAGGAGACGGCATCCTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 72 bp TCGTGCACCTGCAGACTCTATATACTTCACATAGGATaGAGCAATGTAGTAGTTTCCCAACTTCGCCATTTT +
Preference number: 6 (lower is better)
Translates to: SCTCRLYILHIG*SNVVVSQLRHF
Trigger: AAAATGGCGAAGTTGGGAAACTACTACATTGCTGCATCCTATGTGAAGTATATAGAGTCTGCAGGTGCACGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS TCA 72 bp AATGGTCTCCATTATCAAAGCTCTCTAGAGCCTTGCTaGAAAATATTTTGGCCACTCGGGAATAACCTGAAT +
Preference number: 6 (lower is better)
Translates to: NGLHYQSSLEPC*KIFWPLGNNLN
Trigger: ATTCAGGTTATTCCCGAGTGGCCAAAATATTTTTCAGCAAGGCTCTAGAGAGCTTTGATAATGGAGACCATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4
CDS GCA 72 bp AACTCCATTAATAGATCTAAAAAGTTCTTCATACTCTaGATCACTAAGATCGGGCCTTATGGGCACAACTCG +
Preference number: 6 (lower is better)
Translates to: NSINRSKKFFIL*ITKIGPYGHNS
Trigger: CGAGTTGTGCCCATAAGGCCCGATCTTAGTGATGCAGAGTATGAAGAACTTTTTAGATCTATTAATGGAGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000098242.4