RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for GGA1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000033128

Ensembl transcript IDs: ENSMUST00000041587.8, ENSMUST00000230192.2

Found 231 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAGTGGGTGTGGCCTGAGGTGGAGGCCCAGGGGGCTCTGGGGACGTaGTGTGGAGGAGGCTGGCGGCTCCTGGGCTGGGCGAGCTGCTCT +
Preference number: 1 (lower is better)
Translates to: QWVWPEVEAQGALGT*CGGGWRLLGWASCS
Trigger: AGAGCAGCTCGCCCAGCCCAGGAGCCGCCAGCCTCCTCCACACCACGTCCCCAGAGCCCCCTGGGCCTCCACCTCAGGCCACACCCACTG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR CCA 90 bp GAGGTGGAGGCCCAGGGGGCTCTGGGGACGTGGTGTGGAGGAGGCTaGCGGCTCCTGGGCTGGGCGAGCTGCTCTTACTCTGCAGGTCAC +
Preference number: 1 (lower is better)
Translates to: EVEAQGALGTWCGGG*RLLGWASCSYSAGH
Trigger: GTGACCTGCAGAGTAAGAGCAGCTCGCCCAGCCCAGGAGCCGCCAGCCTCCTCCACACCACGTCCCCAGAGCCCCCTGGGCCTCCACCTC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR TCA 90 bp TCCTTCCAGGGCATACGGCCCCTCCCTGCTCCAGGCTCCCACTGGTaGTGGAGGTCCCAGCAGCTATGGCAGACCCAGGCGCAGCCTCCT +
Preference number: 1 (lower is better)
Translates to: SFQGIRPLPAPGSHW*WRSQQLWQTQAQPP
Trigger: AGGAGGCTGCGCCTGGGTCTGCCATAGCTGCTGGGACCTCCATCACCAGTGGGAGCCTGGAGCAGGGAGGGGCCGTATGCCCTGGAAGGA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR GCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTaGCCCTCCTCTCTCCAGCCCCTCTGTCCTAGAGGCTCCCCCAGG +
Preference number: 1 (lower is better)
Translates to: PQEGEKHRMNRSRSC*PSSLQPLCPRGSPR
Trigger: CCTGGGGGAGCCTCTAGGACAGAGGGGCTGGAGAGAGGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR GCA 90 bp TGCTTCTCCCACCGCACTTGCTGGGCTTCCGGAGGCAGAGCCTGCTaGATAAGGGTTTTCCCCAAGAGGTCCAGGTCGTCCAGGCCGCTG +
Preference number: 1 (lower is better)
Translates to: CFSHRTCWASGGRAC*IRVFPKRSRSSRPL
Trigger: CAGCGGCCTGGACGACCTGGACCTCTTGGGGAAAACCCTTATGCAGCAGGCTCTGCCTCCGGAAGCCCAGCAAGTGCGGTGGGAGAAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR GCA 90 bp TGCTGCTTCTCCCACCGCACTTGCTGGGCTTCCGGAGGCAGAGCCTaGTGCATAAGGGTTTTCCCCAAGAGGTCCAGGTCGTCCAGGCCG +
Preference number: 1 (lower is better)
Translates to: CCFSHRTCWASGGRA*CIRVFPKRSRSSRP
Trigger: CGGCCTGGACGACCTGGACCTCTTGGGGAAAACCCTTATGCAGCAGGCTCTGCCTCCGGAAGCCCAGCAAGTGCGGTGGGAGAAGCAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR GCA 90 bp ACTCTGGGAGTTCCATGGCCCTCCAGGGGGCATGTCCTCTGGCTCTaGTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGA +
Preference number: 1 (lower is better)
Translates to: TLGVPWPSRGHVLWL*FQVSMARGSLRAKG
Trigger: TCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCAGAGCCAGAGGACATGCCCCCTGGAGGGCCATGGAACTCCCAGAGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR CCA 90 bp GCCTGGGCTGGAGGAGGGACTGAGGATTCAGTGCCATCTGATGACTaGAAGTTGTCCCACCCCACACTATCTGAGCTGGTGCCTGAAGGT +
Preference number: 1 (lower is better)
Translates to: AWAGGGTEDSVPSDD*KLSHPTLSELVPEG
Trigger: ACCTTCAGGCACCAGCTCAGATAGTGTGGGGTGGGACAACTTCCAGTCATCAGATGGCACTGAATCCTCAGTCCCTCCTCCAGCCCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR CCA 90 bp CCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATaGCCCTCCAGGGGGCATGTCCTCTGGCTCTGCTTTCAAGTTTCC +
Preference number: 1 (lower is better)
Translates to: PQQKVIMEHGTLGVP*PSRGHVLWLCFQVS
Trigger: GGAAACTTGAAAGCAGAGCCAGAGGACATGCCCCCTGGAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR TCA 90 bp AAAAAGTCACTTTATTTTCATAAATACTCCCACTGCCACCCATCCTaGCCCTACTTGACCACAGGAGGGTGGGCAGATGTGAGGTGCTCC +
Preference number: 1 (lower is better)
Translates to: KKSLYFHKYSHCHPS*PYLTTGGWADVRCS
Trigger: GGAGCACCTCACATCTGCCCACCCTCCTGTGGTCAAGTAGGGTCAGGATGGGTGGCAGTGGGAGTATTTATGAAAATAAAGTGACTTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp CACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCGCCGCTGCTCGTTGGTaGAGGGGCCTGGGCTGGGGG +
Preference number: 2 (lower is better)
Translates to: HWGPQEGEKHRMNRSRSCAAARW*RGLGWG
Trigger: CCCCCAGCCCAGGCCCCTCCACCAACGAGCAGCGGC...GCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp ACCACCAGCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGGGGGTCGGCAGTCCATaGTGGGGGCCTGGGCTGGAG +
Preference number: 2 (lower is better)
Translates to: TTSTSERPGSGSRAKWKRGVGSP*WGPGLE
Trigger: CTCCAGCCCAGGCCCCCAGCATGGACTGCCGACCCC...CCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGCTGGTGGT
67% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCCCCCCACCCAGTCACTaGGTCCCCGCAGAGGAGGCC +
Preference number: 2 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSPPPSH*VPAEEA
Trigger: GGCCTCCTCTGCGGGGACCCAGTGACTGGGTGGGGG...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
67% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp AGACCACCACCACCAGCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATCCCCCACCCAGTCACTaGGTCCCCGCAGAGGAGGCC +
Preference number: 2 (lower is better)
Translates to: RPPPPAHRSALAVGPEQNPPPSH*VPAEEA
Trigger: GGCCTCCTCTGCGGGGACCCAGTGACTGGGTGGGGG...ATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGCTGGTGGTGGTGGTCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGAGGGTGTGGCCTGAGGTaGAGGCCCAGGGGGCTCTGG +
Preference number: 2 (lower is better)
Translates to: GWADVRCSREAPAEGDNGGCGLR*RPRGLW
Trigger: CCAGAGCCCCCTGGGCCTCCACCTCAGGCCACACCC...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCGCAAAGGGAGGCCTCTaGAGGCCCCGGGGGCTGAGT +
Preference number: 2 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSAKGGL*RPRGLS
Trigger: ACTCAGCCCCCGGGGCCTCCAGAGGCCTCCCTTTGC...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp GCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGACACGGAAGGCCCAGGGGGCTCTaGGGACGTGGTGTGGAGGAG +
Preference number: 2 (lower is better)
Translates to: AHRSALAVGPEQNGRGHGRPRGL*GRGVEE
Trigger: CTCCTCCACACCACGTCCCCAGAGCCCCCTGGGCCT...TCCGTGTCCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCTGGCCCGTGGGAGCCTaGGAGCAAAGGGAGGCCTCT +
Preference number: 2 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSWPVGA*EQREAS
Trigger: AGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCA...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp AGACCACCACCACCAGCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATCATACGGCCCCTCCCTaGTCCAGGCTCCCACTGGTG +
Preference number: 2 (lower is better)
Translates to: RPPPPAHRSALAVGPEQNHTAPP*SRLPLV
Trigger: CACCAGTGGGAGCCTGGAGCAGGGAGGGGCCGTATG...ATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGCTGGTGGTGGTGGTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGACCCGCAGAGGAGGCCTaGGCTGGTCCCAGTTTCCAG +
Preference number: 2 (lower is better)
Translates to: GWADVRCSREAPAEGDNGPAEEA*AGPSFQ
Trigger: CTGGAAACTGGGACCAGCCCAGGCCTCCTCTGCGGG...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp ACCACCAGCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGTCCCACCGCACTTGCTaGGCTTCCGGAGGCAGAGCC +
Preference number: 2 (lower is better)
Translates to: TTSTSERPGSGSRAKWKRSHRTC*ASGGRA
Trigger: GGCTCTGCCTCCGGAAGCCCAGCAAGTGCGGTGGGA...CCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGCTGGTGGT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGGGTCGTCCAGGCCGCTaGTCGTTGGTGGAGGGGCCT +
Preference number: 2 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWGRPGR*SLVEGP
Trigger: AGGCCCCTCCACCAACGAGCAGCGGCCTGGACGACC...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGGACCCCACCTCAGGCTaGGGTTCAGGGCTGGGCCTC +
Preference number: 2 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWDPTSG*GSGLGL
Trigger: GAGGCCCAGCCCTGAACCCCAGCCTGAGGTGGGGTC...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGGTCGGCAGTCCATGCTaGGGGCCTGGGCTGGAGGAG +
Preference number: 2 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWVGSPC*GPGLEE
Trigger: CTCCTCCAGCCCAGGCCCCCAGCATGGACTGCCGAC...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCCATCCTGACCCTACTTaGCCACAGGAGGGTGGGCAG +
Preference number: 2 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSHPDPT*PQEGGQ
Trigger: CTGCCCACCCTCCTGTGGTCAAGTAGGGTCAGGATG...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp CACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCAACAGGTCCAGGTCCTaGTGCCCCTCCTCTCTCCAG +
Preference number: 2 (lower is better)
Translates to: HWGPQEGEKHRMNRSRSCNRSRS*CPSSLQ
Trigger: CTGGAGAGAGGAGGGGCAGCAGGACCTGGACCTGTT...GCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGCCCGCAGAGGAGGCCTaGGCTGGTCCCAGTTTCCAG +
Preference number: 2 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWPAEEA*AGPSFQ
Trigger: CTGGAAACTGGGACCAGCCCAGGCCTCCTCTGCGGG...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCGGAGCGCCCTGGCAGTaGGTCCCGAGCAAAATGGAA +
Preference number: 2 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSGAPWQ*VPSKME
Trigger: TTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCC...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGAATGTTCCGGATGGGCTaGGGCGCCGTGCTCAGCATA +
Preference number: 2 (lower is better)
Translates to: GWADVRCSREAPAEGDNGMFRMG*GAVLSI
Trigger: TATGCTGAGCACGGCGCCCCAGCCCATCCGGAACAT...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGCCAGGCTCCCACTGGTaGTGGAGGTCCCAGCAGCTA +
Preference number: 2 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWPGSHW*WRSQQL
Trigger: TAGCTGCTGGGACCTCCATCACCAGTGGGAGCCTGG...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCGGCATAAAAGACAGGTaGGGACGACCCCACCTCAGG +
Preference number: 2 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSGIKDR*GRPHLR
Trigger: CCTGAGGTGGGGTCGTCCTCACCTGTCTTTTATGCC...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp GCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCCAGGGGAGGTCCAGGTCCTGCTaGCCCTCCTCTCTCCAGCCC +
Preference number: 2 (lower is better)
Translates to: AEGDNGAWNSGSSMALQGRSRSC*PSSLQP
Trigger: GGGCTGGAGAGAGGAGGGGCAGCAGGACCTGGACCT...CCCCTGGAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCCCAGGCGCAGCCTCCTaGTGGGTTTGGCTCAGCAGG +
Preference number: 2 (lower is better)
Translates to: APAEGDNGAWNSGSSMALPGAAS*WVWLSR
Trigger: CCTGCTGAGCCAAACCCAGCAGGAGGCTGCGCCTGG...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCCATACGGCCCCTCCCTaGTCCAGGCTCCCACTGGTG +
Preference number: 2 (lower is better)
Translates to: APAEGDNGAWNSGSSMALHTAPP*SRLPLV
Trigger: CACCAGTGGGAGCCTGGAGCAGGGAGGGGCCGTATG...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCTGGGCAGATGTGAGGTaGTCCCGGGAGGCCCCAGCA +
Preference number: 2 (lower is better)
Translates to: APAEGDNGAWNSGSSMALWADVR*SREAPA
Trigger: TGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCA...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp TCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCGCAGGCCGCTGCTCGTTaGTGGAGGGGCCTGGGCTGG +
Preference number: 2 (lower is better)
Translates to: SKRKATSQTTHQVHTARAQAAAR*WRGLGW
Trigger: CCAGCCCAGGCCCCTCCACCAACGAGCAGCGGCCTG...CGCCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp CACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCGAGAGAAGCACAGGATaGACAGGTCCAGGTCCTGCT +
Preference number: 2 (lower is better)
Translates to: HWGPQEGEKHRMNRSRSCERSTG*TGPGPA
Trigger: AGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTC...GCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCGCAAGGAGCAGGACCTaGGTGATGGCTGAGGGGTGG +
Preference number: 2 (lower is better)
Translates to: APAEGDNGAWNSGSSMALARSRT*VMAEGW
Trigger: CCACCCCTCAGCCATCACCCAGGTCCTGCTCCTTGC...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGGGAGGCCCCGGGGGCTaGGTGGAGAGCTCCTTCAGC +
Preference number: 2 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVGGPGG*VESSFS
Trigger: GCTGAAGGAGCTCTCCACTCAGCCCCCGGGGCCTCC...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGGAGGGTGGGCAGATGTaGGGTGCTCCCGGGAGGCCC +
Preference number: 2 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVEGGQM*GAPGRP
Trigger: GGGCCTCCCGGGAGCACCTCACATCTGCCCACCCTC...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGATCCCAGTTTCCAGCATaGCCTCCAAGTTATGGCTGG +
Preference number: 2 (lower is better)
Translates to: GWADVRCSREAPAEGDNGSQFPA*PPSYGW
Trigger: CCAGCCATAACTTGGAGGCCATGCTGGAAACTGGGA...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCGTGCCATCTGATGACTaGAAGTTGTCCCACCCCACA +
Preference number: 2 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSVPSDD*KLSHPT
Trigger: TGTGGGGTGGGACAACTTCCAGTCATCAGATGGCAC...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp CATAGTGAAGATGAGCTTGTAGCGGAGGCGAACCTTCTCCTTCTGGGGGTTAGCTCCATGCTGGGGGCCTaGGCTGGAGGAGGGACTGAG +
Preference number: 2 (lower is better)
Translates to: HSEDELVAEANLLLLGVSSMLGA*AGGGTE
Trigger: CTCAGTCCCTCCTCCAGCCCAGGCCCCCAGCATGGA...GCTAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCATCTTCACTATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp CATAGTGAAGATGAGCTTGTAGCGGAGGCGAACCTTCTCCTTCTGGGGGTTAGCGGTGGACGATGGGGTTaGACGCTGGCAGCTCTGTGC +
Preference number: 2 (lower is better)
Translates to: HSEDELVAEANLLLLGVSGGRWG*TLAALC
Trigger: GCACAGAGCTGCCAGCGTTCAACCCCATCGTCCACC...GCTAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCATCTTCACTATG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGGACCCCACCTCAGGCTaGGGTTCAGGGCTGGGCCTC +
Preference number: 2 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGDPTSG*GSGLGL
Trigger: GAGGCCCAGCCCTGAACCCCAGCCTGAGGTGGGGTC...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGTGGCCCGTGGGAGCCTaGGAGCAAAGGGAGGCCTCT +
Preference number: 2 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVWPVGA*EQREAS
Trigger: AGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCA...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCCAGGCGCAGCCTCCTaGTGGGTTTGGCTCAGCAGG +
Preference number: 2 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGPGAAS*WVWLSR
Trigger: CCTGCTGAGCCAAACCCAGCAGGAGGCTGCGCCTGG...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGTGGGCAGATGTGAGGTaGTCCCGGGAGGCCCCAGCA +
Preference number: 2 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVWADVR*SREAPA
Trigger: TGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCA...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp GCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCCAGGGGCACTATCTGAGCTGGTaGCTGAAGGTGGTGTCGGGT +
Preference number: 2 (lower is better)
Translates to: AEGDNGAWNSGSSMALQGHYLSW*LKVVSG
Trigger: ACCCGACACCACCTTCAGGCACCAGCTCAGATAGTG...CCCCTGGAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGGGCGCAGCCTCCTGCTaGGTTTGGCTCAGCAGGGGA +
Preference number: 2 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGGAASC*VWLSRG
Trigger: TCCCCTGCTGAGCCAAACCCAGCAGGAGGCTGCGCC...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGTCCCAGTTTCCAGCATaGCCTCCAAGTTATGGCTGG +
Preference number: 2 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWSQFPA*PPSYGW
Trigger: CCAGCCATAACTTGGAGGCCATGCTGGAAACTGGGA...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGTCTGGGGACGTGGTGTaGAGGAGGCTGGCGGCTCCT +
Preference number: 2 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVSGDVV*RRLAAP
Trigger: AGGAGCCGCCAGCCTCCTCCACACCACGTCCCCAGA...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp TCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCGGGCATAAAAGACAGGTaGGGACGACCCCACCTCAGG +
Preference number: 2 (lower is better)
Translates to: SKRKATSQTTHQVHTARAGIKDR*GRPHLR
Trigger: CCTGAGGTGGGGTCGTCCTCACCTGTCTTTTATGCC...CGCCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp CATAGTGAAGATGAGCTTGTAGCGGAGGCGAACCTTCTCCTTCTGGGGGTTAGCAGTTTCCATGGCCCGTaGGAGCCTGAGAGCAAAGGG +
Preference number: 2 (lower is better)
Translates to: HSEDELVAEANLLLLGVSSFHGP*EPESKG
Trigger: CCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACT...GCTAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCATCTTCACTATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp CACATCTCCCATCTCATTGTAGGTCTGGTCGCCCATAGTGAAGATGAGCTTGTAGACCTGGGTGATGGCTaGGGGGTGGACGATGGGGTT +
Preference number: 2 (lower is better)
Translates to: HISHLIVGLVAHSEDELVDLGDG*GVDDGV
Trigger: AACCCCATCGTCCACCCCTCAGCCATCACCCAGGTC...TACAAGCTCATCTTCACTATGGGCGACCAGACCTACAATGAGATGGGAGATGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp CATAGTGAAGATGAGCTTGTAGCGGAGGCGAACCTTCTCCTTCTGGGGGTTAGCTTAGGGAGAACTCAGTaGGTGTGGCCTGAGGTGGAG +
Preference number: 2 (lower is better)
Translates to: HSEDELVAEANLLLLGVSLGRTQ*VWPEVE
Trigger: CTCCACCTCAGGCCACACCCACTGAGTTCTCCCTAA...GCTAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCATCTTCACTATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp CACATCTCCCATCTCATTGTAGGTCTGGTCGCCCATAGTGAAGATGAGCTTGTAAACAGGTCCAGGTCCTaGTGCCCCTCCTCTCTCCAG +
Preference number: 2 (lower is better)
Translates to: HISHLIVGLVAHSEDELVNRSRS*CPSSLQ
Trigger: CTGGAGAGAGGAGGGGCAGCAGGACCTGGACCTGTT...TACAAGCTCATCTTCACTATGGGCGACCAGACCTACAATGAGATGGGAGATGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGAGTTTCCATGGCCCGTaGGAGCCTGAGAGCAAAGGG +
Preference number: 2 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVSFHGP*EPESKG
Trigger: CCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACT...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCGGTGATAATGGAGCATaGAACTCTGGGAGTTCCATG +
Preference number: 2 (lower is better)
Translates to: APAEGDNGAWNSGSSMALGDNGA*NSGSSM
Trigger: CATGGAACTCCCAGAGTTCCATGCTCCATTATCACC...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGTTGACCACAGGAGGGTaGGCAGATGTGAGGTGCTCC +
Preference number: 2 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGLTTGG*ADVRCS
Trigger: GGAGCACCTCACATCTGCCCACCCTCCTGTGGTCAA...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCTCTGTGCCGGAAGGTaGCTGCAGCCTCACCTTCAT +
Preference number: 2 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGLCAGR*LQPHLH
Trigger: ATGAAGGTGAGGCTGCAGCCACCTTCCGGCACAGAG...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CCA 90 bp CACATCTCCCATCTCATTGTAGGTCTGGTCGCCCATAGTGAAGATGAGCTTGTATTGACCACAGGAGGGTaGGCAGATGTGAGGTGCTCC +
Preference number: 2 (lower is better)
Translates to: HISHLIVGLVAHSEDELVLTTGG*ADVRCS
Trigger: GGAGCACCTCACATCTGCCCACCCTCCTGTGGTCAA...TACAAGCTCATCTTCACTATGGGCGACCAGACCTACAATGAGATGGGAGATGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR TCA 90 bp CACATCTCCCATCTCATTGTAGGTCTGGTCGCCCATAGTGAAGATGAGCTTGTAGAGAGAAGCACAGGATaGACAGGTCCAGGTCCTGCT +
Preference number: 2 (lower is better)
Translates to: HISHLIVGLVAHSEDELVERSTG*TGPGPA
Trigger: AGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTC...TACAAGCTCATCTTCACTATGGGCGACCAGACCTACAATGAGATGGGAGATGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR GCA 90 bp CACATCTCCCATCTCATTGTAGGTCTGGTCGCCCATAGTGAAGATGAGCTTGTACATGTCCTCTGGCTCTaGTTTCAAGTTTCCATGGCC +
Preference number: 2 (lower is better)
Translates to: HISHLIVGLVAHSEDELVHVLWL*FQVSMA
Trigger: GGCCATGGAAACTTGAAAGCAGAGCCAGAGGACATG...TACAAGCTCATCTTCACTATGGGCGACCAGACCTACAATGAGATGGGAGATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR CCA 72 bp GCCCAGGGGGCTCTGGGGACGTGGTGTGGAGGAGGCTaGCGGCTCCTGGGCTGGGCGAGCTGCTCTTACTCT +
Preference number: 3 (lower is better)
Translates to: AQGALGTWCGGG*RLLGWASCSYS
Trigger: AGAGTAAGAGCAGCTCGCCCAGCCCAGGAGCCGCCAGCCTCCTCCACACCACGTCCCCAGAGCCCCCTGGGC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CAA 90 bp CACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCCCAGGCCGCTGCTCGTaGGTGGAGGGGCCTGGGCTG +
Preference number: 3 (lower is better)
Translates to: HWGPQEGEKHRMNRSRSCPGRCS*VEGPGL
Trigger: CAGCCCAGGCCCCTCCACCAACGAGCAGCGGCCTGG...GCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR CCA 72 bp ATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTaGAGGCCCCGGGGGCTGAGTGGAGAGCTCCTTCAG +
Preference number: 3 (lower is better)
Translates to: MARGSLRAKGGL*RPRGLSGELLQ
Trigger: CTGAAGGAGCTCTCCACTCAGCCCCCGGGGCCTCCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCAT
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR CCA 72 bp CTCTGGGGACGTGGTGTGGAGGAGGCTGGCGGCTCCTaGGCTGGGCGAGCTGCTCTTACTCTGCAGGTCACG +
Preference number: 3 (lower is better)
Translates to: LWGRGVEEAGGS*AGRAALTLQVT
Trigger: CGTGACCTGCAGAGTAAGAGCAGCTCGCCCAGCCCAGGAGCCGCCAGCCTCCTCCACACCACGTCCCCAGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR TCA 72 bp GGCTCTGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTaGGAGCAAAGGGAGGCCTCTGGAGGCCCCGGGGGC +
Preference number: 3 (lower is better)
Translates to: GSAFKFPWPVGA*EQREASGGPGG
Trigger: GCCCCCGGGGCCTCCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCAGAGCC
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR GCA 72 bp CACCCCAGAGTCCTTCCAGGGCATACGGCCCCTCCCTaGTCCAGGCTCCCACTGGTGATGGAGGTCCCAGCA +
Preference number: 3 (lower is better)
Translates to: HPRVLPGHTAPP*SRLPLVMEVPA
Trigger: TGCTGGGACCTCCATCACCAGTGGGAGCCTGGAGCAGGGAGGGGCCGTATGCCCTGGAAGGACTCTGGGGTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR CCA 72 bp CCAGCAGCTATGGCAGACCCAGGCGCAGCCTCCTGCTaGGTTTGGCTCAGCAGGGGAAGAGGGAGGGGGAAG +
Preference number: 3 (lower is better)
Translates to: PAAMADPGAASC*VWLSRGRGRGK
Trigger: CTTCCCCCTCCCTCTTCCCCTGCTGAGCCAAACCCAGCAGGAGGCTGCGCCTGGGTCTGCCATAGCTGCTGG
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR GCA 72 bp GGGTTGAACGCTGGCAGCTCTGTGCCGGAAGGTGGCTaGAGCCTCACCTTCATGACCTTGGGGACGGCTGAC +
Preference number: 3 (lower is better)
Translates to: GLNAGSSVPEGG*SLTFMTLGTAD
Trigger: GTCAGCCGTCCCCAAGGTCATGAAGGTGAGGCTGCAGCCACCTTCCGGCACAGAGCTGCCAGCGTTCAACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR GCA 72 bp CACCGCACTTGCTGGGCTTCCGGAGGCAGAGCCTGCTaGATAAGGGTTTTCCCCAAGAGGTCCAGGTCGTCC +
Preference number: 3 (lower is better)
Translates to: HRTCWASGGRAC*IRVFPKRSRSS
Trigger: GGACGACCTGGACCTCTTGGGGAAAACCCTTATGCAGCAGGCTCTGCCTCCGGAAGCCCAGCAAGTGCGGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR GCA 72 bp GTTCCATGGCCCTCCAGGGGGCATGTCCTCTGGCTCTaGTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGA +
Preference number: 3 (lower is better)
Translates to: VPWPSRGHVLWL*FQVSMARGSLR
Trigger: TCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCAGAGCCAGAGGACATGCCCCCTGGAGGGCCATGGAAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR GCA 72 bp TGGGGGCCTGGGCTGGAGGAGGGACTGAGGATTCAGTaGCATCTGATGACTGGAAGTTGTCCCACCCCACAC +
Preference number: 3 (lower is better)
Translates to: WGPGLEEGLRIQ*HLMTGSCPTPH
Trigger: GTGTGGGGTGGGACAACTTCCAGTCATCAGATGGCACTGAATCCTCAGTCCCTCCTCCAGCCCAGGCCCCCA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR-3UTR CAA 90 bp GCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGACACGGAAAGATGCTGCTGGGTTaGATAGACTCCAGGGGCACA +
Preference number: 3 (lower is better)
Translates to: AHRSALAVGPEQNGRGHGKMLLG*IDSRGT
Trigger: TGTGCCCCTGGAGTCTATCAAACCCAGCAGCATCTT...TCCGTGTCCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR CCA 72 bp AAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATaGCCCTCCAGGGGGCATGTCCTCTGGCTCTGCTTT +
Preference number: 3 (lower is better)
Translates to: KVIMEHGTLGVP*PSRGHVLWLCF
Trigger: AAAGCAGAGCCAGAGGACATGCCCCCTGGAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
3UTR CCA 72 bp GGAGGAGGGACTGAGGATTCAGTGCCATCTGATGACTaGAAGTTGTCCCACCCCACACTATCTGAGCTGGTG +
Preference number: 3 (lower is better)
Translates to: GGGTEDSVPSDD*KLSHPTLSELV
Trigger: CACCAGCTCAGATAGTGTGGGGTGGGACAACTTCCAGTCATCAGATGGCACTGAATCCTCAGTCCCTCCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
3UTR CCA 72 bp GAGGACACGGAAGCCATGCTGGTCATAAACGGTCACTaGCAAGATGCTGCTGGGTTTGATAGACTCCAGGGG +
Preference number: 3 (lower is better)
Translates to: EDTEAMLVINGH*QDAAGFDRLQG
Trigger: CCCCTGGAGTCTATCAAACCCAGCAGCATCTTGCCAGTGACCGTTTATGACCAGCATGGCTTCCGTGTCCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGAGGTTGCCAGGGCGGGTaGGCGTGGCTGGCTGGGTGG +
Preference number: 4 (lower is better)
Translates to: GWADVRCSREAPAEGDNGGCQGG*AWLAGW
Trigger: CCACCCAGCCAGCCACGCCCACCCGCCCTGGCAACC...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp GCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCAGGCCCAGGGGGCTCTaGGGACGTGGTGTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: ATGGREAQDEQVQVLLPLRPRGL*GRGVEE
Trigger: CTCCTCCACACCACGTCCCCAGAGCCCCCTGGGCCT...GAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR GCA 90 bp AAGAGTCACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGGGGGTCGGCAGTCCATaGTGGGGGCCTGGGCTGGAG +
Preference number: 4 (lower is better)
Translates to: KSHWGPQEGEKHRMNRSRGVGSP*WGPGLE
Trigger: CTCCAGCCCAGGCCCCCAGCATGGACTGCCGACCCC...CCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTGACTCTT
64% GC, longest homopolymer 6 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCTGCTCAGGACTGCTCTaGTTGCCAGGGCGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSCSGLL*LPGRVG
Trigger: GCCCACCCGCCCTGGCAACCAGAGCAGTCCTGAGCA...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGATCCATGCTGGGGGCCTaGGCTGGAGGAGGGACTGAG +
Preference number: 4 (lower is better)
Translates to: GWADVRCSREAPAEGDNGSMLGA*AGGGTE
Trigger: CTCAGTCCCTCCTCCAGCCCAGGCCCCCAGCATGGA...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CCA 90 bp GCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCCAGGGGGCCGCTGCTCGTTGGTaGAGGGGCCTGGGCTGGGGG +
Preference number: 4 (lower is better)
Translates to: AEGDNGAWNSGSSMALQGAAARW*RGLGWG
Trigger: CCCCCAGCCCAGGCCCCTCCACCAACGAGCAGCGGC...CCCCTGGAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CCA 90 bp GCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCTCCCACCGCACTTGCTaGGCTTCCGGAGGCAGAGCC +
Preference number: 4 (lower is better)
Translates to: ATGGREAQDEQVQVLLPLSHRTC*ASGGRA
Trigger: GGCTCTGCCTCCGGAAGCCCAGCAAGTGCGGTGGGA...GAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGATCTGGGGACGTGGTGTaGAGGAGGCTGGCGGCTCCT +
Preference number: 4 (lower is better)
Translates to: GWADVRCSREAPAEGDNGSGDVV*RRLAAP
Trigger: AGGAGCCGCCAGCCTCCTCCACACCACGTCCCCAGA...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR TCA 90 bp GCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGACACGGAGGGACACCGAGGCACTaGGCTGCTCAGGACTGCTCT +
Preference number: 4 (lower is better)
Translates to: AHRSALAVGPEQNGRGHGGTPRH*AAQDCS
Trigger: AGAGCAGTCCTGAGCAGCTCAGTGCCTCGGTGTCCC...TCCGTGTCCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR TCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGAGGTGGACGATGGGGTTaGACGCTGGCAGCTCTGTGC +
Preference number: 4 (lower is better)
Translates to: GWADVRCSREAPAEGDNGGGRWG*TLAALC
Trigger: GCACAGAGCTGCCAGCGTTCAACCCCATCGTCCACC...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR TCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCGACCTGGGTGATGGCTaGGGGGTGGACGATGGGGTT +
Preference number: 4 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSDLGDG*GVDDGV
Trigger: AACCCCATCGTCCACCCCTCAGCCATCACCCAGGTC...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR TCA 90 bp ATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGACACGGAAGCCGAGGTCCAGCAGGGCTaGCGTGCAGGAATGGAGCTG +
Preference number: 4 (lower is better)
Translates to: IGAPWQWVPSKMEEDTEAEVQQG*RAGMEL
Trigger: CAGCTCCATTCCTGCACGTCAGCCCTGCTGGACCTC...GGCTTCCGTGTCCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp TGGGCTTCCGGAGGCAGAGCCTGCTGCATAAGGGTTTTCCCCAAGAGGTCCAGGTGCTCAGGACTGCTCTaGTTGCCAGGGCGGGTGGGC +
Preference number: 4 (lower is better)
Translates to: WASGGRACCIRVFPKRSRCSGLL*LPGRVG
Trigger: GCCCACCCGCCCTGGCAACCAGAGCAGTCCTGAGCA...CCTGGACCTCTTGGGGAAAACCCTTATGCAGCAGGCTCTGCCTCCGGAAGCCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCCAGGCCGCTGCTCGTTaGTGGAGGGGCCTGGGCTGG +
Preference number: 4 (lower is better)
Translates to: APAEGDNGAWNSGSSMALQAAAR*WRGLGW
Trigger: CCAGCCCAGGCCCCTCCACCAACGAGCAGCGGCCTG...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGAGCAAGGAGCAGGACCTaGGTGATGGCTGAGGGGTGG +
Preference number: 4 (lower is better)
Translates to: GWADVRCSREAPAEGDNGARSRT*VMAEGW
Trigger: CCACCCCTCAGCCATCACCCAGGTCCTGCTCCTTGC...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR TCA 90 bp AAGAGTCACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGGAGGTCCTCAGGGTGTaGGCTCTTCAGCAGGCGGGC +
Preference number: 4 (lower is better)
Translates to: KSHWGPQEGEKHRMNRSREVLRV*ALQQAG
Trigger: GCCCGCCTGCTGAAGAGCTCACACCCTGAGGACCTC...CCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTGACTCTT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR TCA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGCTGTGGCATCACCGTTaGCCTCCTCGCCCCGGACCA +
Preference number: 4 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWLWHHR*PPRPGP
Trigger: TGGTCCGGGGCGAGGAGGTCAACGGTGATGCCACAG...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp AGACCACCACCACCAGCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATCCAGCAGGGCTGACGTaGAGGAATGGAGCTGGCTGT +
Preference number: 4 (lower is better)
Translates to: RPPPPAHRSALAVGPEQNPAGLT*RNGAGC
Trigger: ACAGCCAGCTCCATTCCTGCACGTCAGCCCTGCTGG...ATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGCTGGTGGTGGTGGTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp GCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCGGGGACTGGATCTTGTaGGCCAGCAAGCGAGTGGCA +
Preference number: 4 (lower is better)
Translates to: ATGGREAQDEQVQVLLPLGDWIL*ASKRVA
Trigger: TGCCACTCGCTTGCTGGCCCACAAGATCCAGTCCCC...GAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCCCAGTCGGAAGAGTGTaGGTCGCATGCGCTCACAGC +
Preference number: 4 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSPVGRV*VACAHS
Trigger: GCTGTGAGCGCATGCGACCCACACTCTTCCGACTGG...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR TCA 90 bp TCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCGTCAGTGGGTGTGGCCTaGGGTGGAGGCCCAGGGGGC +
Preference number: 4 (lower is better)
Translates to: SKRKATSQTTHQVHTARASVGVA*GGGPGG
Trigger: GCCCCCTGGGCCTCCACCTCAGGCCACACCCACTGA...CGCCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR TCA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCGGAGCAGGACCTGGGTaGTGGCTGAGGGGTGGACGA +
Preference number: 4 (lower is better)
Translates to: APAEGDNGAWNSGSSMALGAGPG*WLRGGR
Trigger: TCGTCCACCCCTCAGCCATCACCCAGGTCCTGCTCC...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR GCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGATCGCCCCGGACCAGCTaGTTGTACAGGTTGATCACC +
Preference number: 4 (lower is better)
Translates to: GWADVRCSREAPAEGDNGSPRTS*LYRLIT
Trigger: GGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGA...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCTCGCCCCGGACCAGCTaGTTGTACAGGTTGATCACC +
Preference number: 4 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSSPRTS*LYRLIT
Trigger: GGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGA...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGAGCAGCACCCTGGCTGTaGCTCATCACCATCTCTGTC +
Preference number: 4 (lower is better)
Translates to: GWADVRCSREAPAEGDNGAAPWL*LITISV
Trigger: GACAGAGATGGTGATGAGCCACAGCCAGGGTGCTGC...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp TGGGCTTCCGGAGGCAGAGCCTGCTGCATAAGGGTTTTCCCCAAGAGGTCCAGGCCAGTCGGAAGAGTGTaGGTCGCATGCGCTCACAGC +
Preference number: 4 (lower is better)
Translates to: WASGGRACCIRVFPKRSRPVGRV*VACAHS
Trigger: GCTGTGAGCGCATGCGACCCACACTCTTCCGACTGG...CCTGGACCTCTTGGGGAAAACCCTTATGCAGCAGGCTCTGCCTCCGGAAGCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp TCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCGGGGTGTGGCCTGAGGTaGAGGCCCAGGGGGCTCTGG +
Preference number: 4 (lower is better)
Translates to: SKRKATSQTTHQVHTARAGCGLR*RPRGLW
Trigger: CCAGAGCCCCCTGGGCCTCCACCTCAGGCCACACCC...CGCCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CCA 90 bp GCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGACACGGAGCTGACGTGCAGGAATaGAGCTGGCTGTGGCATCAC +
Preference number: 4 (lower is better)
Translates to: AHRSALAVGPEQNGRGHGADVQE*SWLWHH
Trigger: GTGATGCCACAGCCAGCTCCATTCCTGCACGTCAGC...TCCGTGTCCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR TCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCGCTCGCAGAAACTGTTaGTGCTGGCCCAGTTCAGCT +
Preference number: 4 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSARRNC*CWPSSA
Trigger: AGCTGAACTGGGCCAGCATCAACAGTTTCTGCGAGC...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR TCA 90 bp CACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCGCTCGCAGAAACTGTTaGTGCTGGCCCAGTTCAGCT +
Preference number: 4 (lower is better)
Translates to: HWGPQEGEKHRMNRSRSCARRNC*CWPSSA
Trigger: AGCTGAACTGGGCCAGCATCAACAGTTTCTGCGAGC...GCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp GCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCTGCCGCAGCTCTTCATaGACGTCTCCAGAACCGTCA +
Preference number: 4 (lower is better)
Translates to: ATGGREAQDEQVQVLLPLCRSSS*TSPEPS
Trigger: TGACGGTTCTGGAGACGTGCATGAAGAGCTGCGGCA...GAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp GCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCTTGCCCACCTCATCATaGAACCTCTTGCCGCAGCTC +
Preference number: 4 (lower is better)
Translates to: ATGGREAQDEQVQVLLPLLPTSS*NLLPQL
Trigger: GAGCTGCGGCAAGAGGTTCCATGATGAGGTGGGCAA...GAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGATTGCCCACCTCATCATaGAACCTCTTGCCGCAGCTC +
Preference number: 4 (lower is better)
Translates to: GWADVRCSREAPAEGDNGLPTSS*NLLPQL
Trigger: GAGCTGCGGCAAGAGGTTCCATGATGAGGTGGGCAA...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp TGGGCTTCCGGAGGCAGAGCCTGCTGCATAAGGGTTTTCCCCAAGAGGTCCAGGGCAGCACCCTGGCTGTaGCTCATCACCATCTCTGTC +
Preference number: 4 (lower is better)
Translates to: WASGGRACCIRVFPKRSRAAPWL*LITISV
Trigger: GACAGAGATGGTGATGAGCCACAGCCAGGGTGCTGC...CCTGGACCTCTTGGGGAAAACCCTTATGCAGCAGGCTCTGCCTCCGGAAGCCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCTGTCTTCCGTGTCACTaGCCAGTCGGAAGAGTGTGG +
Preference number: 4 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSCLPCH*PVGRVW
Trigger: CCACACTCTTCCGACTGGCCAGTGACACGGAAGACA...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp CACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGTCTTCCGTGTCACTaGCCAGTCGGAAGAGTGTGG +
Preference number: 4 (lower is better)
Translates to: HWGPQEGEKHRMNRSRSCCLPCH*PVGRVW
Trigger: CCACACTCTTCCGACTGGCCAGTGACACGGAAGACA...GCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGGGTTGCCAGGGCGGGTaGGCGTGGCTGGCTGGGTGG +
Preference number: 4 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGGCQGG*AWLAGW
Trigger: CCACCCAGCCAGCCACGCCCACCCGCCCTGGCAACC...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp TCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCGGTCGGCAGTCCATGCTaGGGGCCTGGGCTGGAGGAG +
Preference number: 4 (lower is better)
Translates to: SKRKATSQTTHQVHTARAVGSPC*GPGLEE
Trigger: CTCCTCCAGCCCAGGCCCCCAGCATGGACTGCCGAC...CGCCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR TCA 90 bp TCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCGCTGTGGCATCACCGTTaGCCTCCTCGCCCCGGACCA +
Preference number: 4 (lower is better)
Translates to: SKRKATSQTTHQVHTARALWHHR*PPRPGP
Trigger: TGGTCCGGGGCGAGGAGGTCAACGGTGATGCCACAG...CGCCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp CACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCCATCATGGAACCTCTTaGCGCAGCTCTTCATGCACG +
Preference number: 4 (lower is better)
Translates to: HWGPQEGEKHRMNRSRSCHHGTS*RSSSCT
Trigger: CGTGCATGAAGAGCTGCGGCAAGAGGTTCCATGATG...GCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGACATCATGGAACCTCTTaGCGCAGCTCTTCATGCACG +
Preference number: 4 (lower is better)
Translates to: GWADVRCSREAPAEGDNGHHGTS*RSSSCT
Trigger: CGTGCATGAAGAGCTGCGGCAAGAGGTTCCATGATG...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp CACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCCGCTTCTGGTCCTCCTaGACCATCTCTTTGATGAGC +
Preference number: 4 (lower is better)
Translates to: HWGPQEGEKHRMNRSRSCRFWSS*TISLMS
Trigger: GCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCG...GCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp AAGAGTCACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGAGAGTGTGGGTCGCATaGGCTCACAGCGCTGGTACA +
Preference number: 4 (lower is better)
Translates to: KSHWGPQEGEKHRMNRSRRVWVA*AHSAGT
Trigger: TGTACCAGCGCTGTGAGCGCATGCGACCCACACTCT...CCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTGACTCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGTGGCTGGCTGGGTGGTaGCCGGGGGAGGGAGGTCCA +
Preference number: 4 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVWLAGW*PGEGGP
Trigger: TGGACCTCCCTCCCCCGGGCACCACCCAGCCAGCCA...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp AAGAGTCACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGCTCTGTGCCGGAAGGTaGCTGCAGCCTCACCTTCAT +
Preference number: 4 (lower is better)
Translates to: KSHWGPQEGEKHRMNRSRLCAGR*LQPHLH
Trigger: ATGAAGGTGAGGCTGCAGCCACCTTCCGGCACAGAG...CCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTGACTCTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR TCA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGTTAGGCCCAGAGACATaGGCTCGTCATCAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWLGPET*ARHQAG
Trigger: CCCTGCTTGATGACGAGCTCATGTCTCTGGGCCTAA...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCGGCTCTGTTGATTCGTaGCTCCAGAGTCTCCGGCTC +
Preference number: 4 (lower is better)
Translates to: APAEGDNGAWNSGSSMALGSVDS*LQSLRL
Trigger: GAGCCGGAGACTCTGGAGGCACGAATCAACAGAGCC...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCAGAGTGTGGGTCGCATaGGCTCACAGCGCTGGTACA +
Preference number: 4 (lower is better)
Translates to: APAEGDNGAWNSGSSMALRVWVA*AHSAGT
Trigger: TGTACCAGCGCTGTGAGCGCATGCGACCCACACTCT...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp AAGAGTCACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGCACTATCTGAGCTGGTaGCTGAAGGTGGTGTCGGGT +
Preference number: 4 (lower is better)
Translates to: KSHWGPQEGEKHRMNRSRHYLSW*LKVVSG
Trigger: ACCCGACACCACCTTCAGGCACCAGCTCAGATAGTG...CCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTGACTCTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR GCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGGGTCGTCCAGGCCGCTaGTCGTTGGTGGAGGGGCCT +
Preference number: 4 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGGRPGR*SLVEGP
Trigger: AGGCCCCTCCACCAACGAGCAGCGGCCTGGACGACC...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGATTTTCCATCCGCTTCTaGTCCTCCTGCACCATCTCT +
Preference number: 4 (lower is better)
Translates to: GWADVRCSREAPAEGDNGFSIRF*SSCTIS
Trigger: AGAGATGGTGCAGGAGGACCAGAAGCGGATGGAAAA...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp ATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGACACGGAAGCCTGGCATTCACCCGCTTaGAGATCTTTTCCATCCGCT +
Preference number: 4 (lower is better)
Translates to: IGAPWQWVPSKMEEDTEAWHSPA*RSFPSA
Trigger: AGCGGATGGAAAAGATCTCCAAGCGGGTGAATGCCA...GGCTTCCGTGTCCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR TCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGGAGGTCCTCAGGGTGTaGGCTCTTCAGCAGGCGGGC +
Preference number: 4 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGEVLRV*ALQQAG
Trigger: GCCCGCCTGCTGAAGAGCTCACACCCTGAGGACCTC...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR TCA 90 bp GCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCCAGGGGGGTACAGTTCCTTCATaGGGTCCTCACTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: AEGDNGAWNSGSSMALQGGTVPS*GPHCCW
Trigger: CCAGCAGCAGTGAGGACCTCATGAAGGAACTGTACC...CCCCTGGAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGC
57% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGCGCTTCTGGTCCTCCTaGACCATCTCTTTGATGAGC +
Preference number: 4 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWRFWSS*TISLMS
Trigger: GCTCATCAAAGAGATGGTGCAGGAGGACCAGAAGCG...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp TCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCGCTCACTGCTGCTGGATaGAGCACCCTGGCTGTGGCT +
Preference number: 4 (lower is better)
Translates to: SKRKATSQTTHQVHTARALTAAG*STLAVA
Trigger: AGCCACAGCCAGGGTGCTGCATCCAGCAGCAGTGAG...CGCCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp AAGAGTCACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGATGCGCTCACAGCGCTaGTACAGTTCCTTCATGAGG +
Preference number: 4 (lower is better)
Translates to: KSHWGPQEGEKHRMNRSRMRSQR*YSSFMR
Trigger: CCTCATGAAGGAACTGTACCAGCGCTGTGAGCGCAT...CCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTGACTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp AAGAGTCACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGGTGCCATCTGATGACTaGAAGTTGTCCCACCCCACA +
Preference number: 4 (lower is better)
Translates to: KSHWGPQEGEKHRMNRSRVPSDD*KLSHPT
Trigger: TGTGGGGTGGGACAACTTCCAGTCATCAGATGGCAC...CCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTGACTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR TCA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGCCTCAAAGTCTTCGTTaGGCTGCTCGCAGAAACTGT +
Preference number: 4 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWPQSLR*AARRNC
Trigger: ACAGTTTCTGCGAGCAGCTCAACGAAGACTTTGAGG...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR TCA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGAACTTCACATTGTTGTTaGCCTCCTCGATGGCATTCA +
Preference number: 4 (lower is better)
Translates to: GWADVRCSREAPAEGDNGTSHCC*PPRWHS
Trigger: TGAATGCCATCGAGGAGGTCAACAACAATGTGAAGT...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR TCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGGGGACACCGAGGCACTaGGCTGCTCAGGACTGCTCT +
Preference number: 4 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGGTPRH*AAQDCS
Trigger: AGAGCAGTCCTGAGCAGCTCAGTGCCTCGGTGTCCC...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
56% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR TCA 90 bp TCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCGGACCTTGGGGACGGCTaGCTGGAAAACGATGTTCCG +
Preference number: 4 (lower is better)
Translates to: SKRKATSQTTHQVHTARADLGDG*LENDVP
Trigger: CGGAACATCGTTTTCCAGTCAGCCGTCCCCAAGGTC...CGCCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CCA 90 bp AAGAGTCACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTTTTCCATCCGCTTCTaGTCCTCCTGCACCATCTCT +
Preference number: 4 (lower is better)
Translates to: KSHWGPQEGEKHRMNRSRFSIRF*SSCTIS
Trigger: AGAGATGGTGCAGGAGGACCAGAAGCGGATGGAAAA...CCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTGACTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCACATCGGAGCGCCCTaGCAGTGGGTCCCGAGCAAA +
Preference number: 4 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGHIGAP*QWVPSK
Trigger: TTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTG...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR TCA 90 bp GGGACTGAGGATTCAGTGCCATCTGATGACTGGAAGTTGTCCCACCCCACACTAGGTACAGTTCCTTCATaGGGTCCTCACTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: GTEDSVPSDDWKLSHPTLGTVPS*GPHCCW
Trigger: CCAGCAGCAGTGAGGACCTCATGAAGGAACTGTACC...TAGTGTGGGGTGGGACAACTTCCAGTCATCAGATGGCACTGAATCCTCAGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGTTCTCCCACCGCACTTaGTGGGCTTCCGGAGGCAGA +
Preference number: 4 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVFSHRT*WASGGR
Trigger: TCTGCCTCCGGAAGCCCAGCAAGTGCGGTGGGAGAA...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGGGGGACTGGATCTTGTaGGCCAGCAAGCGAGTGGCA +
Preference number: 4 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGGDWIL*ASKRVA
Trigger: TGCCACTCGCTTGCTGGCCCACAAGATCCAGTCCCC...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
54% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCTGGCATTCACCCGCTTaGAGATCTTTTCCATCCGCT +
Preference number: 4 (lower is better)
Translates to: APAEGDNGAWNSGSSMALWHSPA*RSFPSA
Trigger: AGCGGATGGAAAAGATCTCCAAGCGGGTGAATGCCA...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGGGAGCGCCCTGGCAGTaGGTCCCGAGCAAAATGGAA +
Preference number: 4 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVGAPWQ*VPSKME
Trigger: TTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCC...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CCA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGATGTTCCGGATGGGCTaGGGCGCCGTGCTCAGCATA +
Preference number: 4 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVMFRMG*GAVLSI
Trigger: TATGCTGAGCACGGCGCCCCAGCCCATCCGGAACAT...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
3UTR CAA 72 bp GGGACTGAGGATTCAGTGCCATCTGATGACTGGAAGTaGTCCCACCCCACACTATCTGAGCTGGTGCCTGAA +
Preference number: 4 (lower is better)
Translates to: GTEDSVPSDDWK*SHPTLSELVPE
Trigger: TTCAGGCACCAGCTCAGATAGTGTGGGGTGGGACAACTTCCAGTCATCAGATGGCACTGAATCCTCAGTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp CACATCTCCCATCTCATTGTAGGTCTGGTCGCCCATAGTGAAGATGAGCTTGTACTCACTGCTGCTGGATaGAGCACCCTGGCTGTGGCT +
Preference number: 4 (lower is better)
Translates to: HISHLIVGLVAHSEDELVLTAAG*STLAVA
Trigger: AGCCACAGCCAGGGTGCTGCATCCAGCAGCAGTGAG...TACAAGCTCATCTTCACTATGGGCGACCAGACCTACAATGAGATGGGAGATGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp TCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCGATGCGCTCACAGCGCTaGTACAGTTCCTTCATGAGG +
Preference number: 4 (lower is better)
Translates to: SKRKATSQTTHQVHTARAMRSQR*YSSFMR
Trigger: CCTCATGAAGGAACTGTACCAGCGCTGTGAGCGCAT...CGCCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR TCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGTTAGGCCCAGAGACATaGGCTCGTCATCAAGCAGGG +
Preference number: 4 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGLGPET*ARHQAG
Trigger: CCCTGCTTGATGACGAGCTCATGTCTCTGGGCCTAA...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR GCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGTGCCGCAGCTCTTCATaGACGTCTCCAGAACCGTCA +
Preference number: 4 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGCRSSS*TSPEPS
Trigger: TGACGGTTCTGGAGACGTGCATGAAGAGCTGCGGCA...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGTTAGGGAGAACTCAGTaGGTGTGGCCTGAGGTGGAG +
Preference number: 4 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGLGRTQ*VWPEVE
Trigger: CTCCACCTCAGGCCACACCCACTGAGTTCTCCCTAA...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CCA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGGGCGGGCCAGCATCTTaGACTTCTCCTCATCTTCAA +
Preference number: 4 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGGGPAS*TSPHLQ
Trigger: TTGAAGATGAGGAGAAGTCCAAGATGCTGGCCCGCC...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGACACGGAGCTGTGGCATCACCGTaGACCTCCTCGCCCCGGACC +
Preference number: 5 (lower is better)
Translates to: AHRSALAVGPEQNGRGHGAVASP*TSSPRT
Trigger: GGTCCGGGGCGAGGAGGTCAACGGTGATGCCACAGC...TCCGTGTCCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGATCAGGACTGCTCTGGTaGCCAGGGCGGGTGGGCGTG +
Preference number: 5 (lower is better)
Translates to: GWADVRCSREAPAEGDNGSGLLW*PGRVGV
Trigger: CACGCCCACCCGCCCTGGCAACCAGAGCAGTCCTGA...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGACACGGATCAGGACTGCTCTGGTaGCCAGGGCGGGTGGGCGTG +
Preference number: 5 (lower is better)
Translates to: AHRSALAVGPEQNGRGHGSGLLW*PGRVGV
Trigger: CACGCCCACCCGCCCTGGCAACCAGAGCAGTCCTGA...TCCGTGTCCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS GCA 90 bp AGAGACATGAGCTCGTCATCAAGCAGGGACACCGAGGCACTGAGCTaGTCAGGACTGCTCTGGTTGCCAGGGCGGGTGGGCGTGGCTGGC +
Preference number: 5 (lower is better)
Translates to: RDMSSSSSRDTEALS*SGLLWLPGRVGVAG
Trigger: GCCAGCCACGCCCACCCGCCCTGGCAACCAGAGCAGTCCTGAGCAGCTCAGTGCCTCGGTGTCCCTGCTTGATGACGAGCTCATGTCTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCCAGGGGCCAGGCCGCTGCTCGTaGGTGGAGGGGCCTGGGCTG +
Preference number: 5 (lower is better)
Translates to: AEGDNGAWNSGSSMALQGPGRCS*VEGPGL
Trigger: CAGCCCAGGCCCCTCCACCAACGAGCAGCGGCCTGG...CCCCTGGAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CAA 90 bp CACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCGGGTGGACGATGGGGTaGAACGCTGGCAGCTCTGTG +
Preference number: 5 (lower is better)
Translates to: HWGPQEGEKHRMNRSRSCGWTMG*NAGSSV
Trigger: CACAGAGCTGCCAGCGTTCAACCCCATCGTCCACCC...GCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CAA 90 bp AAGAGTCACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGCCCCGGACCAGCTGCTaGTACAGGTTGATCACCTGG +
Preference number: 5 (lower is better)
Translates to: KSHWGPQEGEKHRMNRSRPRTSC*YRLITW
Trigger: CCAGGTGATCAACCTGTACAAGCAGCTGGTCCGGGG...CCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTGACTCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS GCA 90 bp GAGCTGGCTGTGGCATCACCGTTGACCTCCTCGCCCCGGACCAGCTaGTTGTACAGGTTGATCACCTGGGTGAGATTGTCATTAGCCTGC +
Preference number: 5 (lower is better)
Translates to: ELAVASPLTSSPRTS*LYRLITWVRLSLAC
Trigger: GCAGGCTAATGACAATCTCACCCAGGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGAGGAGGTCAACGGTGATGCCACAGCCAGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CCA 90 bp TCACTGGCCAGTCGGAAGAGTGTGGGTCGCATGCGCTCACAGCGCTaGTACAGTTCCTTCATGAGGTCCTCACTGCTGCTGGATGCAGCA +
Preference number: 5 (lower is better)
Translates to: SLASRKSVGRMRSQR*YSSFMRSSLLLDAA
Trigger: TGCTGCATCCAGCAGCAGTGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGCATGCGACCCACACTCTTCCGACTGGCCAGTGA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CCA 90 bp CCTGCAGGATCTCAGCTAAGGCCTCATCATTGTCTTCCGTGTCACTaGCCAGTCGGAAGAGTGTGGGTCGCATGCGCTCACAGCGCTGGT +
Preference number: 5 (lower is better)
Translates to: PAGSQLRPHHCLPCH*PVGRVWVACAHSAG
Trigger: ACCAGCGCTGTGAGCGCATGCGACCCACACTCTTCCGACTGGCCAGTGACACGGAAGACAATGATGAGGCCTTAGCTGAGATCCTGCAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCCCTCAAAGTCTTCGTaGAGCTGCTCGCAGAAACTG +
Preference number: 5 (lower is better)
Translates to: ATGGREAQDEQVQVLLPLPSKSS*SCSQKL
Trigger: CAGTTTCTGCGAGCAGCTCAACGAAGACTTTGAGGG...GAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp ACCACCAGCACATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGTCTTTGATGAGCTTATaGGCAGCCCGGAGGTCCTCA +
Preference number: 5 (lower is better)
Translates to: TTSTSERPGSGSRAKWKRSLMSL*AARRSS
Trigger: TGAGGACCTCCGGGCTGCCAATAAGCTCATCAAAGA...CCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGATGTGCTGGTGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp CCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCTGCCCCTCCATGGCATTCACCCGCTaGGAGATCTTTTCCATCCGC +
Preference number: 5 (lower is better)
Translates to: PQEGEKHRMNRSRSCCPSMAFTR*EIFSIR
Trigger: GCGGATGGAAAAGATCTCCAAGCGGGTGAATGCCAT...GGAGGGGCAGCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGAATGGCATTCACCCGCTaGGAGATCTTTTCCATCCGC +
Preference number: 5 (lower is better)
Translates to: GWADVRCSREAPAEGDNGMAFTR*EIFSIR
Trigger: GCGGATGGAAAAGATCTCCAAGCGGGTGAATGCCAT...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCCAGGGGCCCCGGACCAGCTGCTaGTACAGGTTGATCACCTGG +
Preference number: 5 (lower is better)
Translates to: AEGDNGAWNSGSSMALQGPRTSC*YRLITW
Trigger: CCAGGTGATCAACCTGTACAAGCAGCTGGTCCGGGG...CCCCTGGAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGTGCTCGCAGAAACTGTaGATGCTGGCCCAGTTCAGC +
Preference number: 5 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWCSQKL*MLAQFS
Trigger: GCTGAACTGGGCCAGCATCAACAGTTTCTGCGAGCA...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GGGTGGGCAGATGTGAGGTGCTCCCGGGAGGCCCCAGCAGAAGGTGATAATGGATTGGGAGACACAACCTaGATGAGCTCGTTGAGGAAG +
Preference number: 5 (lower is better)
Translates to: GWADVRCSREAPAEGDNGLGDTT*MSSLRK
Trigger: CTTCCTCAACGAGCTCATCAAGGTTGTGTCTCCCAA...TCCATTATCACCTTCTGCTGGGGCCTCCCGGGAGCACCTCACATCTGCCCACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGGCTGTGGCATCACCGTaGACCTCCTCGCCCCGGACC +
Preference number: 5 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGAVASP*TSSPRT
Trigger: GGTCCGGGGCGAGGAGGTCAACGGTGATGCCACAGC...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp AAGAGTCACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCATCATGGAACCTCTaGCCGCAGCTCTTCATGCAC +
Preference number: 5 (lower is better)
Translates to: KSHWGPQEGEKHRMNRSRSSWNL*PQLFMH
Trigger: GTGCATGAAGAGCTGCGGCAAGAGGTTCCATGATGA...CCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTGACTCTT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp CACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGTCCTGCAGCAACTTCACATTGTaGTTGACCTCCTCGATGGCA +
Preference number: 5 (lower is better)
Translates to: HWGPQEGEKHRMNRSRSCSNFTL*LTSSMA
Trigger: TGCCATCGAGGAGGTCAACAACAATGTGAAGTTGCT...GCAGGACCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp ATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGACACGGAAGCCAGCAACTTCACATTGTaGTTGACCTCCTCGATGGCA +
Preference number: 5 (lower is better)
Translates to: IGAPWQWVPSKMEEDTEASNFTL*LTSSMA
Trigger: TGCCATCGAGGAGGTCAACAACAATGTGAAGTTGCT...GGCTTCCGTGTCCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCGCTAAGGCCTCATCATaGTCTTCCGTGTCACTGGCC +
Preference number: 5 (lower is better)
Translates to: APAEGDNGAWNSGSSMALAKASS*SSVSLA
Trigger: GGCCAGTGACACGGAAGACAATGATGAGGCCTTAGC...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS GCA 90 bp AGCAAGCGAGTGGCAAGTGGAGGCCCCTCAAAGTCTTCGTTGAGCTaGTCGCAGAAACTGTTGATGCTGGCCCAGTTCAGCTCCTTGTTC +
Preference number: 5 (lower is better)
Translates to: SKRVASGGPSKSSLS*SQKLLMLAQFSSLF
Trigger: GAACAAGGAGCTGAACTGGGCCAGCATCAACAGTTTCTGCGAGCAGCTCAACGAAGACTTTGAGGGGCCTCCACTTGCCACTCGCTTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS GCA 90 bp ACAGCGCTGGTACAGTTCCTTCATGAGGTCCTCACTGCTGCTGGATaGAGCACCCTGGCTGTGGCTCATCACCATCTCTGTCAGCAACTT +
Preference number: 5 (lower is better)
Translates to: TALVQFLHEVLTAAG*STLAVAHHHLCQQL
Trigger: AAGTTGCTGACAGAGATGGTGATGAGCCACAGCCAGGGTGCTGCATCCAGCAGCAGTGAGGACCTCATGAAGGAACTGTACCAGCGCTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CCA 90 bp TTGACCTCCTCGCCCCGGACCAGCTGCTTGTACAGGTTGATCACCTaGGTGAGATTGTCATTAGCCTGCAGGATCTCAGCTAAGGCCTCA +
Preference number: 5 (lower is better)
Translates to: LTSSPRTSCLYRLIT*VRLSLACRISAKAS
Trigger: TGAGGCCTTAGCTGAGATCCTGCAGGCTAATGACAATCTCACCCAGGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGAGGAGGTCAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCTCTTTGATGAGCTTATaGGCAGCCCGGAGGTCCTCA +
Preference number: 5 (lower is better)
Translates to: APAEGDNGAWNSGSSMALSLMSL*AARRSS
Trigger: TGAGGACCTCCGGGCTGCCAATAAGCTCATCAAAGA...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp TGCTTTCAAGTTTCCATGGCCCGTGGGAGCCTGAGAGCAAAGGGAGGCCTCTGGTCCTGCACCATCTCTTaGATGAGCTTATTGGCAGCC +
Preference number: 5 (lower is better)
Translates to: CFQVSMARGSLRAKGGLWSCTIS*MSLLAA
Trigger: GGCTGCCAATAAGCTCATCAAAGAGATGGTGCAGGA...CCAGAGGCCTCCCTTTGCTCTCAGGCTCCCACGGGCCATGGAAACTTGAAAGCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp ATCGGAGCGCCCTGGCAGTGGGTCCCGAGCAAAATGGAAGAGGACACGGAAGCCAACTTCACATTGTTGTaGACCTCCTCGATGGCATTC +
Preference number: 5 (lower is better)
Translates to: IGAPWQWVPSKMEEDTEANFTLL*TSSMAF
Trigger: GAATGCCATCGAGGAGGTCAACAACAATGTGAAGTT...GGCTTCCGTGTCCTCTTCCATTTTGCTCGGGACCCACTGCCAGGGCGCTCCGAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp AAGAGTCACTGGGGGCCACAGGAGGGAGAGAAGCACAGGATGAACAGGTCCAGGATCACCTGGGTGAGATaGTCATTAGCCTGCAGGATC +
Preference number: 5 (lower is better)
Translates to: KSHWGPQEGEKHRMNRSRITWVR*SLACRI
Trigger: GATCCTGCAGGCTAATGACAATCTCACCCAGGTGAT...CCTGGACCTGTTCATCCTGTGCTTCTCTCCCTCCTGTGGCCCCCAGTGACTCTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCCAGGGGAAGATGCTGCTGGGTTaGATAGACTCCAGGGGCACA +
Preference number: 5 (lower is better)
Translates to: AEGDNGAWNSGSSMALQGKMLLG*IDSRGT
Trigger: TGTGCCCCTGGAGTCTATCAAACCCAGCAGCATCTT...CCCCTGGAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS-3UTR CAA 90 bp CATAGTGAAGATGAGCTTGTAGCGGAGGCGAACCTTCTCCTTCTGGGGGTTAGCTGCTCGCAGAAACTGTaGATGCTGGCCCAGTTCAGC +
Preference number: 5 (lower is better)
Translates to: HSEDELVAEANLLLLGVSCSQKL*MLAQFS
Trigger: GCTGAACTGGGCCAGCATCAACAGTTTCTGCGAGCA...GCTAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCATCTTCACTATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp TCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCGGCTAAGGCCTCATCATaGTCTTCCGTGTCACTGGCC +
Preference number: 5 (lower is better)
Translates to: SKRKATSQTTHQVHTARAAKASS*SSVSLA
Trigger: GGCCAGTGACACGGAAGACAATGATGAGGCCTTAGC...CGCCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCCAGGGGATCACCTGGGTGAGATaGTCATTAGCCTGCAGGATC +
Preference number: 5 (lower is better)
Translates to: AEGDNGAWNSGSSMALQGITWVR*SLACRI
Trigger: GATCCTGCAGGCTAATGACAATCTCACCCAGGTGAT...CCCCTGGAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GGGACTGAGGATTCAGTGCCATCTGATGACTGGAAGTTGTCCCACCCCACACTACCCTCAAAGTCTTCGTaGAGCTGCTCGCAGAAACTG +
Preference number: 5 (lower is better)
Translates to: GTEDSVPSDDWKLSHPTLPSKSS*SCSQKL
Trigger: CAGTTTCTGCGAGCAGCTCAACGAAGACTTTGAGGG...TAGTGTGGGGTGGGACAACTTCCAGTCATCAGATGGCACTGAATCCTCAGTCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp GCCCCAGCAGAAGGTGATAATGGAGCATGGAACTCTGGGAGTTCCATGGCCCTCGTCAGCAACTTCACATaGTTGTTGACCTCCTCGATG +
Preference number: 5 (lower is better)
Translates to: APAEGDNGAWNSGSSMALVSNFT*LLTSSM
Trigger: CATCGAGGAGGTCAACAACAATGTGAAGTTGCTGAC...GAGGGCCATGGAACTCCCAGAGTTCCATGCTCCATTATCACCTTCTGCTGGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp CATAGTGAAGATGAGCTTGTAGCGGAGGCGAACCTTCTCCTTCTGGGGGTTAGCTCCTGCACCATCTCTTaGATGAGCTTATTGGCAGCC +
Preference number: 5 (lower is better)
Translates to: HSEDELVAEANLLLLGVSSCTIS*MSLLAA
Trigger: GGCTGCCAATAAGCTCATCAAAGAGATGGTGCAGGA...GCTAACCCCCAGAAGGAGAAGGTTCGCCTCCGCTACAAGCTCATCTTCACTATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp TCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGCGGTCAGCAACTTCACATaGTTGTTGACCTCCTCGATG +
Preference number: 5 (lower is better)
Translates to: SKRKATSQTTHQVHTARAVSNFT*LLTSSM
Trigger: CATCGAGGAGGTCAACAACAATGTGAAGTTGCTGAC...CGCCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGTTGGGAGACACAACCTaGATGAGCTCGTTGAGGAAG +
Preference number: 5 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVLGDTT*MSSLRK
Trigger: CTTCCTCAACGAGCTCATCAAGGTTGTGTCTCCCAA...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp AGCATGGCCTCCAAGTTATGGCTGGGCCTTTCCATAAGGCATAAAAGACAGGTGAGCTGCTTGTACAGGTaGATCACCTGGGTGAGATTG +
Preference number: 5 (lower is better)
Translates to: SMASKLWLGLSIRHKRQVSCLYR*ITWVRL
Trigger: CAATCTCACCCAGGTGATCAACCTGTACAAGCAGCT...CACCTGTCTTTTATGCCTTATGGAAAGGCCCAGCCATAACTTGGAGGCCATGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp CACATCTCCCATCTCATTGTAGGTCTGGTCGCCCATAGTGAAGATGAGCTTGTAAGCTGCTTGTACAGGTaGATCACCTGGGTGAGATTG +
Preference number: 5 (lower is better)
Translates to: HISHLIVGLVAHSEDELVSCLYR*ITWVRL
Trigger: CAATCTCACCCAGGTGATCAACCTGTACAAGCAGCT...TACAAGCTCATCTTCACTATGGGCGACCAGACCTACAATGAGATGGGAGATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS-3UTR CAA 90 bp ATTCCAAAAGAAAAGCAACGAGCCAGACCACACACCAAGTGCACACAGCTAGGGAACTTCACATTGTTGTaGACCTCCTCGATGGCATTC +
Preference number: 5 (lower is better)
Translates to: IPKEKQRARPHTKCTQLGNFTLL*TSSMAF
Trigger: GAATGCCATCGAGGAGGTCAACAACAATGTGAAGTT...CCCTAGCTGTGTGCACTTGGTGTGTGGTCTGGCTCGTTGCTTTTCTTTTGGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CCA 72 bp AGGACTGCTCTGGTTGCCAGGGCGGGTGGGCGTGGCTaGCTGGGTGGTGCCCGGGGGAGGGAGGTCCAGGCC +
Preference number: 6 (lower is better)
Translates to: RTALVARAGGRG*LGGARGREVQA
Trigger: GGCCTGGACCTCCCTCCCCCGGGCACCACCCAGCCAGCCACGCCCACCCGCCCTGGCAACCAGAGCAGTCCT
75% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS GCA 72 bp AGCTCGTCATCAAGCAGGGACACCGAGGCACTGAGCTaGTCAGGACTGCTCTGGTTGCCAGGGCGGGTGGGC +
Preference number: 6 (lower is better)
Translates to: SSSSSRDTEALS*SGLLWLPGRVG
Trigger: GCCCACCCGCCCTGGCAACCAGAGCAGTCCTGAGCAGCTCAGTGCCTCGGTGTCCCTGCTTGATGACGAGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS TCA 72 bp GACGTGCAGGAATGGAGCTGGCTGTGGCATCACCGTTaGCCTCCTCGCCCCGGACCAGCTGCTTGTACAGGT +
Preference number: 6 (lower is better)
Translates to: DVQEWSWLWHHR*PPRPGPAACTG
Trigger: ACCTGTACAAGCAGCTGGTCCGGGGCGAGGAGGTCAACGGTGATGCCACAGCCAGCTCCATTCCTGCACGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000230192.2
CDS CAA 90 bp AGGGCTGACGTGCTTCCAGGAATGGAGCTGGCTGTGGCATCACCGTaGACCTCCTCGCCCCGGACCAGCTGCTTGTACAGGTTGATCACC +
Preference number: 6 (lower is better)
Translates to: RADVLPGMELAVASP*TSSPRTSCLYRLIT
Trigger: GGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGAGGAGGTCAACGGTGATGCCACAGCCAGCTCCATTCCTGGAAGCACGTCAGCCCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS TCA 72 bp TGCTTCCAGGAATGGAGCTGGCTGTGGCATCACCGTTaGCCTCCTCGCCCCGGACCAGCTGCTTGTACAGGT +
Preference number: 6 (lower is better)
Translates to: CFQEWSWLWHHR*PPRPGPAACTG
Trigger: ACCTGTACAAGCAGCTGGTCCGGGGCGAGGAGGTCAACGGTGATGCCACAGCCAGCTCCATTCCTGGAAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS CAA 90 bp TGGGCCAGCAAGCGAGTGGCAAGTGGAGGCCCCTCAAAGTCTTCGTaGAGCTGCTCGCAGAAACTGTTGATGCTGGCCCAGTTCAGCTCC +
Preference number: 6 (lower is better)
Translates to: WASKRVASGGPSKSS*SCSQKLLMLAQFSS
Trigger: GGAGCTGAACTGGGCCAGCATCAACAGTTTCTGCGAGCAGCTCAACGAAGACTTTGAGGGGCCTCCACTTGCCACTCGCTTGCTGGCCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 90 bp CTGGCTGTGGCATCACCGTTGACCTCCTCGCCCCGGACCAGCTGCTaGTACAGGTTGATCACCTGGGTGAGATTGTCATTAGCCTGCAGG +
Preference number: 6 (lower is better)
Translates to: LAVASPLTSSPRTSC*YRLITWVRLSLACR
Trigger: CCTGCAGGCTAATGACAATCTCACCCAGGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGAGGAGGTCAACGGTGATGCCACAGCCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS GCA 72 bp GTGGCATCACCGTTGACCTCCTCGCCCCGGACCAGCTaGTTGTACAGGTTGATCACCTGGGTGAGATTGTCA +
Preference number: 6 (lower is better)
Translates to: VASPLTSSPRTS*LYRLITWVRLS
Trigger: TGACAATCTCACCCAGGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGAGGAGGTCAACGGTGATGCCAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS GCA 72 bp ACTGGAAGTTGTCCCACCCCACACTATCTGAGCTGGTaGCTGAAGGTGGTGTCGGGTCACTTAGGCCCAGAG +
Preference number: 6 (lower is better)
Translates to: TGSCPTPHYLSW*LKVVSGHLGPE
Trigger: CTCTGGGCCTAAGTGACCCGACACCACCTTCAGGCACCAGCTCAGATAGTGTGGGGTGGGACAACTTCCAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000041587.8
CDS CCA 72 bp AGTCGGAAGAGTGTGGGTCGCATGCGCTCACAGCGCTaGTACAGTTCCTTCATGAGGTCCTCACTGCTGCTG +
Preference number: 6 (lower is better)
Translates to: SRKSVGRMRSQR*YSSFMRSSLLL
Trigger: CAGCAGCAGTGAGGACCTCATGAAGGAACTGTACCAGCGCTGTGAGCGCATGCGACCCACACTCTTCCGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CCA 72 bp CATTGTCTTCCGTGTCACTGGCCAGTCGGAAGAGTGTaGGTCGCATGCGCTCACAGCGCTGGTACAGTTCCT +
Preference number: 6 (lower is better)
Translates to: HCLPCHWPVGRV*VACAHSAGTVP
Trigger: AGGAACTGTACCAGCGCTGTGAGCGCATGCGACCCACACTCTTCCGACTGGCCAGTGACACGGAAGACAATG
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 90 bp GCATCACCGTTGACCTCCTCGCCCCGGACCAGCTGCTTGTACAGGTaGATCACCTGGGTGAGATTGTCATTAGCCTGCAGGATCTCAGCT +
Preference number: 6 (lower is better)
Translates to: ASPLTSSPRTSCLYR*ITWVRLSLACRISA
Trigger: AGCTGAGATCCTGCAGGCTAATGACAATCTCACCCAGGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGAGGAGGTCAACGGTGATGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS GCA 72 bp GTGGCAAGTGGAGGCCCCTCAAAGTCTTCGTTGAGCTaGTCGCAGAAACTGTTGATGCTGGCCCAGTTCAGC +
Preference number: 6 (lower is better)
Translates to: VASGGPSKSSLS*SQKLLMLAQFS
Trigger: GCTGAACTGGGCCAGCATCAACAGTTTCTGCGAGCAGCTCAACGAAGACTTTGAGGGGCCTCCACTTGCCAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CCA 72 bp TCTCAGCTAAGGCCTCATCATTGTCTTCCGTGTCACTaGCCAGTCGGAAGAGTGTGGGTCGCATGCGCTCAC +
Preference number: 6 (lower is better)
Translates to: SQLRPHHCLPCH*PVGRVWVACAH
Trigger: GTGAGCGCATGCGACCCACACTCTTCCGACTGGCCAGTGACACGGAAGACAATGATGAGGCCTTAGCTGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp AAGCGAGTGGCAAGTGGAGGCCCCTCAAAGTCTTCGTaGAGCTGCTCGCAGAAACTGTTGATGCTGGCCCAG +
Preference number: 6 (lower is better)
Translates to: KRVASGGPSKSS*SCSQKLLMLAQ
Trigger: CTGGGCCAGCATCAACAGTTTCTGCGAGCAGCTCAACGAAGACTTTGAGGGGCCTCCACTTGCCACTCGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp TTGACCTCCTCGCCCCGGACCAGCTGCTTGTACAGGTaGATCACCTGGGTGAGATTGTCATTAGCCTGCAGG +
Preference number: 6 (lower is better)
Translates to: LTSSPRTSCLYR*ITWVRLSLACR
Trigger: CCTGCAGGCTAATGACAATCTCACCCAGGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGAGGAGGTCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS GCA 72 bp GTACAGTTCCTTCATGAGGTCCTCACTGCTGCTGGATaGAGCACCCTGGCTGTGGCTCATCACCATCTCTGT +
Preference number: 6 (lower is better)
Translates to: VQFLHEVLTAAG*STLAVAHHHLC
Trigger: ACAGAGATGGTGATGAGCCACAGCCAGGGTGCTGCATCCAGCAGCAGTGAGGACCTCATGAAGGAACTGTAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp GACACAACCTTGATGAGCTCGTTGAGGAAGCGGAACTaGCCCACCTCATCATGGAACCTCTTGCCGCAGCTC +
Preference number: 6 (lower is better)
Translates to: DTTLMSSLRKRN*PTSSWNLLPQL
Trigger: GAGCTGCGGCAAGAGGTTCCATGATGAGGTGGGCAAGTTCCGCTTCCTCAACGAGCTCATCAAGGTTGTGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp GCATCACCGTTGACCTCCTCGCCCCGGACCAGCTGCTaGTACAGGTTGATCACCTGGGTGAGATTGTCATTA +
Preference number: 6 (lower is better)
Translates to: ASPLTSSPRTSC*YRLITWVRLSL
Trigger: TAATGACAATCTCACCCAGGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGAGGAGGTCAACGGTGATGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 90 bp AGTGGAGGCCCCTCAAAGTCTTCGTTGAGCTGCTCGCAGAAACTGTaGATGCTGGCCCAGTTCAGCTCCTTGTTCAGGGGATTTGTGGCT +
Preference number: 6 (lower is better)
Translates to: SGGPSKSSLSCSQKL*MLAQFSSLFRGFVA
Trigger: AGCCACAAATCCCCTGAACAAGGAGCTGAACTGGGCCAGCATCAACAGTTTCTGCGAGCAGCTCAACGAAGACTTTGAGGGGCCTCCACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp CCCTCAAAGTCTTCGTTGAGCTGCTCGCAGAAACTGTaGATGCTGGCCCAGTTCAGCTCCTTGTTCAGGGGA +
Preference number: 6 (lower is better)
Translates to: PSKSSLSCSQKL*MLAQFSSLFRG
Trigger: TCCCCTGAACAAGGAGCTGAACTGGGCCAGCATCAACAGTTTCTGCGAGCAGCTCAACGAAGACTTTGAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 90 bp TTGAGCTGCTCGCAGAAACTGTTGATGCTGGCCCAGTTCAGCTCCTaGTTCAGGGGATTTGTGGCTCTGTTGATTCGTGCCTCCAGAGTC +
Preference number: 6 (lower is better)
Translates to: LSCSQKLLMLAQFSS*FRGFVALLIRASRV
Trigger: GACTCTGGAGGCACGAATCAACAGAGCCACAAATCCCCTGAACAAGGAGCTGAACTGGGCCAGCATCAACAGTTTCTGCGAGCAGCTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 90 bp TCGCCCCGGACCAGCTGCTTGTACAGGTTGATCACCTGGGTGAGATaGTCATTAGCCTGCAGGATCTCAGCTAAGGCCTCATCATTGTCT +
Preference number: 6 (lower is better)
Translates to: SPRTSCLYRLITWVR*SLACRISAKASSLS
Trigger: AGACAATGATGAGGCCTTAGCTGAGATCCTGCAGGCTAATGACAATCTCACCCAGGTGATCAACCTGTACAAGCAGCTGGTCCGGGGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp TCGCAGAAACTGTTGATGCTGGCCCAGTTCAGCTCCTaGTTCAGGGGATTTGTGGCTCTGTTGATTCGTGCC +
Preference number: 6 (lower is better)
Translates to: SQKLLMLAQFSS*FRGFVALLIRA
Trigger: GGCACGAATCAACAGAGCCACAAATCCCCTGAACAAGGAGCTGAACTGGGCCAGCATCAACAGTTTCTGCGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp ACATTGTTGTTGACCTCCTCGATGGCATTCACCCGCTaGGAGATCTTTTCCATCCGCTTCTGGTCCTCCTGC +
Preference number: 6 (lower is better)
Translates to: TLLLTSSMAFTR*EIFSIRFWSSC
Trigger: GCAGGAGGACCAGAAGCGGATGGAAAAGATCTCCAAGCGGGTGAATGCCATCGAGGAGGTCAACAACAATGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp TCATTAGCCTGCAGGATCTCAGCTAAGGCCTCATCATaGTCTTCCGTGTCACTGGCCAGTCGGAAGAGTGTG +
Preference number: 6 (lower is better)
Translates to: SLACRISAKASS*SSVSLASRKSV
Trigger: CACACTCTTCCGACTGGCCAGTGACACGGAAGACAATGATGAGGCCTTAGCTGAGATCCTGCAGGCTAATGA
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 90 bp CCCTGGCTGTGGCTCATCACCATCTCTGTCAGCAACTTCACATTGTaGTTGACCTCCTCGATGGCATTCACCCGCTTGGAGATCTTTTCC +
Preference number: 6 (lower is better)
Translates to: PWLWLITISVSNFTL*LTSSMAFTRLEIFS
Trigger: GGAAAAGATCTCCAAGCGGGTGAATGCCATCGAGGAGGTCAACAACAATGTGAAGTTGCTGACAGAGATGGTGATGAGCCACAGCCAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 90 bp GCACCCTGGCTGTGGCTCATCACCATCTCTGTCAGCAACTTCACATaGTTGTTGACCTCCTCGATGGCATTCACCCGCTTGGAGATCTTT +
Preference number: 6 (lower is better)
Translates to: APWLWLITISVSNFT*LLTSSMAFTRLEIF
Trigger: AAAGATCTCCAAGCGGGTGAATGCCATCGAGGAGGTCAACAACAATGTGAAGTTGCTGACAGAGATGGTGATGAGCCACAGCCAGGGTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 90 bp AGCAACTTCACATTGTTGTTGACCTCCTCGATGGCATTCACCCGCTaGGAGATCTTTTCCATCCGCTTCTGGTCCTCCTGCACCATCTCT +
Preference number: 6 (lower is better)
Translates to: SNFTLLLTSSMAFTR*EIFSIRFWSSCTIS
Trigger: AGAGATGGTGCAGGAGGACCAGAAGCGGATGGAAAAGATCTCCAAGCGGGTGAATGCCATCGAGGAGGTCAACAACAATGTGAAGTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp TGGCTCATCACCATCTCTGTCAGCAACTTCACATTGTaGTTGACCTCCTCGATGGCATTCACCCGCTTGGAG +
Preference number: 6 (lower is better)
Translates to: WLITISVSNFTL*LTSSMAFTRLE
Trigger: CTCCAAGCGGGTGAATGCCATCGAGGAGGTCAACAACAATGTGAAGTTGCTGACAGAGATGGTGATGAGCCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp CTGTGGCTCATCACCATCTCTGTCAGCAACTTCACATaGTTGTTGACCTCCTCGATGGCATTCACCCGCTTG +
Preference number: 6 (lower is better)
Translates to: LWLITISVSNFT*LLTSSMAFTRL
Trigger: CAAGCGGGTGAATGCCATCGAGGAGGTCAACAACAATGTGAAGTTGCTGACAGAGATGGTGATGAGCCACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp ACCAGCTGCTTGTACAGGTTGATCACCTGGGTGAGATaGTCATTAGCCTGCAGGATCTCAGCTAAGGCCTCA +
Preference number: 6 (lower is better)
Translates to: TSCLYRLITWVR*SLACRISAKAS
Trigger: TGAGGCCTTAGCTGAGATCCTGCAGGCTAATGACAATCTCACCCAGGTGATCAACCTGTACAAGCAGCTGGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 90 bp TGGCTGTGGCTCATCACCATCTCTGTCAGCAACTTCACATTGTTGTaGACCTCCTCGATGGCATTCACCCGCTTGGAGATCTTTTCCATC +
Preference number: 6 (lower is better)
Translates to: WLWLITISVSNFTLL*TSSMAFTRLEIFSI
Trigger: GATGGAAAAGATCTCCAAGCGGGTGAATGCCATCGAGGAGGTCAACAACAATGTGAAGTTGCTGACAGAGATGGTGATGAGCCACAGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2
CDS CAA 72 bp CTCATCACCATCTCTGTCAGCAACTTCACATTGTTGTaGACCTCCTCGATGGCATTCACCCGCTTGGAGATC +
Preference number: 6 (lower is better)
Translates to: LITISVSNFTLL*TSSMAFTRLEI
Trigger: GATCTCCAAGCGGGTGAATGCCATCGAGGAGGTCAACAACAATGTGAAGTTGCTGACAGAGATGGTGATGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041587.8
ENSMUST00000230192.2