Pregenerated sensors for GFRA4 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027316Ensembl transcript IDs: ENSMUST00000028787.12, ENSMUST00000066958.11, ENSMUST00000110234.8, ENSMUST00000110235.2, ENSMUST00000110239.8, ENSMUST00000110240.10
Found 45 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GATCTCCTTAGTGCCTTGTCATCTTGGAAAAGGACAGTTCCAAATTCTAGGAGCGGATGGGGAAGAAAATaGACAAGATGCCTACTGACG | + |
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Preference number: 2 (lower is better) Translates to: DLLSALSSWKRTVPNSRSGWGRK*TRCLLT Trigger: CGTCAGTAGGCATCTTGTCCATTTTCTTCCCCATCC...GCTCCTAGAATTTGGAACTGTCCTTTTCCAAGATGACAAGGCACTAAGGAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| 3UTR CCA 72 bp | ATCTATGGGTGCTCAGCTCTAGGATGGGGAAGAAAATaGACAAGATGCCTACTGACGGGAACACAGGCTTTT | + |
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Preference number: 3 (lower is better) Translates to: IYGCSALGWGRK*TRCLLTGTQAF Trigger: AAAAGCCTGTGTTCCCGTCAGTAGGCATCTTGTCCATTTTCTTCCCCATCCTAGAGCTGAGCACCCATAGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| 3UTR CCA 72 bp | GCCTGTTCATATGATCTCCTTAGTGCCTTGTCATCTTaGAAAAGGACAGTTCCAAATTCTAGGAGCGGGGGC | + |
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Preference number: 3 (lower is better) Translates to: ACSYDLLSALSS*KRTVPNSRSGG Trigger: GCCCCCGCTCCTAGAATTTGGAACTGTCCTTTTCCAAGATGACAAGGCACTAAGGAGATCATATGAACAGGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| CDS-3UTR CCA 90 bp | CTTGGAAAAGGACAGTTCCAAATTCTAGGAGCGGGGGCTAGTCTCTGTCCTGCTGGAGCGCATGAGGCCTaGAAGGCAAGGAGACGGGGC | + |
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Preference number: 4 (lower is better) Translates to: LGKGQFQILGAGASLCPAGAHEA*KARRRG Trigger: GCCCCGTCTCCTTGCCTTCCAGGCCTCATGCGCTCC...AGCAGGACAGAGACTAGCCCCCGCTCCTAGAATTTGGAACTGTCCTTTTCCAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| CDS-3UTR CCA 90 bp | AGTCTCTCCTTAATGTCTACACACTGTGTCATAGGTGACAAGCCACGTCAGTGCCGCGCCGGTTTCCACTaGCCGCACAGCCGCACCAGG | + |
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Preference number: 4 (lower is better) Translates to: SLSLMSTHCVIGDKPRQCRAGFH*PHSRTR Trigger: CCTGGTGCGGCTGTGCGGCCAGTGGAAACCGGCGCG...GCACTGACGTGGCTTGTCACCTATGACACAGTGTGTAGACATTAAGGAGAGACT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| CDS-3UTR GCA 90 bp | ACACAGGGGTCCAGGCCTGCAAAGGGCAGCAGACCTGAGGGCAAGGGAGTTTCATGCAGAACTGATGGCTaGAAGCTGTCAAAGGCTTGT | + |
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Preference number: 4 (lower is better) Translates to: TQGSRPAKGSRPEGKGVSCRTDG*KLSKAC Trigger: ACAAGCCTTTGACAGCTTGCAGCCATCAGTTCTGCA...TGAAACTCCCTTGCCCTCAGGTCTGCTGCCCTTTGCAGGCCTGGACCCCTGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| CDS-3UTR TCA 90 bp | CCTTGTCTGTCAGCCTGTTCATATGATCTCCTTAGTGCCTTGTCATCTTGGAAAGGAGAGCCAGGGCAGTaGGTGCATACAGCCAGGACA | + |
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Preference number: 4 (lower is better) Translates to: PCLSACSYDLLSALSSWKGEPGQ*VHTART Trigger: TGTCCTGGCTGTATGCACTCACTGCCCTGGCTCTCC...TTTCCAAGATGACAAGGCACTAAGGAGATCATATGAACAGGCTGACAGACAAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| CDS-3UTR GCA 90 bp | CTAGGATGGGGAAGAAAATGGACAAGATGCCTACTGACGGGAACACAGGCTTTTAGCCAGGGCAGTGAGTaGATACAGCCAGGACACCTT | + |
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Preference number: 4 (lower is better) Translates to: LGWGRKWTRCLLTGTQAFSQGSE*IQPGHL Trigger: AAGGTGTCCTGGCTGTATGCACTCACTGCCCTGGCT...AAAAGCCTGTGTTCCCGTCAGTAGGCATCTTGTCCATTTTCTTCCCCATCCTAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| CDS-3UTR GCA 90 bp | TCAGCTCTAGGATGGGGAAGAAAATGGACAAGATGCCTACTGACGGGAACACAGAACAAGGACTGTTTCTaGCTCCAGCTCTTCTCAGGC | + |
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Preference number: 4 (lower is better) Translates to: SALGWGRKWTRCLLTGTQNKDCF*LQLFSG Trigger: GCCTGAGAAGAGCTGGAGGCAGAAACAGTCCTTGTT...CTGTGTTCCCGTCAGTAGGCATCTTGTCCATTTTCTTCCCCATCCTAGAGCTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| CDS-3UTR TCA 90 bp | GATCTCCTTAGTGCCTTGTCATCTTGGAAAAGGACAGTTCCAAATTCTAGGAGCCTGGTCCTGCAGAACTaGTGGCTGCAAGCTGTCAAA | + |
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Preference number: 4 (lower is better) Translates to: DLLSALSSWKRTVPNSRSLVLQN*WLQAVK Trigger: TTTGACAGCTTGCAGCCATCAGTTCTGCAGGACCAG...GCTCCTAGAATTTGGAACTGTCCTTTTCCAAGATGACAAGGCACTAAGGAGATC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| CDS-3UTR CCA 90 bp | CTGTCAGCCTGTTCATATGATCTCCTTAGTGCCTTGTCATCTTGGAAAAGGACAACAGCCAGGACACCTTaGGCGTTAGGACAAAACAAG | + |
|
Preference number: 4 (lower is better) Translates to: LSACSYDLLSALSSWKRTTARTP*ALGQNK Trigger: CTTGTTTTGTCCTAACGCCCAAGGTGTCCTGGCTGT...TGTCCTTTTCCAAGATGACAAGGCACTAAGGAGATCATATGAACAGGCTGACAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| 3UTR CAA 72 bp | TGTCTGTCAGCCTGTTCATATGATCTCCTTAGTGCCTaGTCATCTTGGAAAAGGACAGTTCCAAATTCTAGG | + |
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Preference number: 4 (lower is better) Translates to: CLSACSYDLLSA*SSWKRTVPNSR Trigger: CCTAGAATTTGGAACTGTCCTTTTCCAAGATGACAAGGCACTAAGGAGATCATATGAACAGGCTGACAGACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| CDS GCA 90 bp | GCGGGAGCGCACGCAGCCCCCGGGTCCCGGCCTGCCCCCGGGCGCTaGCCGGCCCAGGCATCGTGCCACGTACTCAGAGCGCAGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: AGAHAAPGSRPAPGR*PAQASCHVLRAQLL Trigger: CAGCAGCTGCGCTCTGAGTACGTGGCACGATGCCTGGGCCGGGCAGCGCCCGGGGGCAGGCCGGGACCCGGGGGCTGCGTGCGCTCCCGC 79% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 6 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110234.8 ENSMUST00000110235.2 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS CCA 90 bp | GGCACCAACCCCGGGCCGGAGAACGCGCAGGCGGGCGCGAAAGTCTaGCGCCGGCGCTCGGCGCACGCGGAGCCTTCGCAGCCGCAGAAG | + |
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Preference number: 5 (lower is better) Translates to: GTNPGPENAQAGAKV*RRRSAHAEPSQPQK Trigger: CTTCTGCGGCTGCGAAGGCTCCGCGTGCGCCGAGCGCCGGCGCCAGACTTTCGCGCCCGCCTGCGCGTTCTCCGGCCCGGGGTTGGTGCC 77% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110234.8 ENSMUST00000110235.2 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS GCA 90 bp | GCATCGTGCCACGTACTCAGAGCGCAGCTGCTGGCACCGCTCGTCTaGTGTACACGCCTCGGCCGCGTCCACGCAGCGATTCCCGTCGGT | + |
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Preference number: 5 (lower is better) Translates to: ASCHVLRAQLLAPLV*CTRLGRVHAAIPVG Trigger: ACCGACGGGAATCGCTGCGTGGACGCGGCCGAGGCGTGTACAGCAGACGAGCGGTGCCAGCAGCTGCGCTCTGAGTACGTGGCACGATGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110234.8 ENSMUST00000110235.2 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS GCA 90 bp | CACTCGTGCCTTGCCCGCGGGAAACAGCACCCAGCAGTCTGGTCCTaGAGAACTGATGGCTGCAAGCTGTCAAAGGCTTGTATGGCACCA | + |
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Preference number: 5 (lower is better) Translates to: HSCLARGKQHPAVWS*RTDGCKLSKACMAP Trigger: TGGTGCCATACAAGCCTTTGACAGCTTGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGCAAGGCACGAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028787.12 ENSMUST00000110240.10 |
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| CDS GCA 90 bp | CAAAACAAGGACTGTTTCTGCCTCCAGCTCTTCTCAGGCCACTCGTaGCTTGCCCGCGGGAAACAGCACCCAGCAGTCTGGTCCTGCAGA | + |
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Preference number: 5 (lower is better) Translates to: QNKDCFCLQLFSGHS*LARGKQHPAVWSCR Trigger: TCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGCAAGGCACGAGTGGCCTGAGAAGAGCTGGAGGCAGAAACAGTCCTTGTTTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028787.12 ENSMUST00000110240.10 |
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| CDS CCA 90 bp | TCAGCTGTGTCGTCCACGGTTCATGTTCCTAATCAGAGCAGGGCCTaGAGAGCCAGGGCAGTGAGTGCATACAGCCAGGACACCTTGGGC | + |
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Preference number: 5 (lower is better) Translates to: SAVSSTVHVPNQSRA*RARAVSAYSQDTLG Trigger: GCCCAAGGTGTCCTGGCTGTATGCACTCACTGCCCTGGCTCTCCAGGCCCTGCTCTGATTAGGAACATGAACCGTGGACGACACAGCTGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028787.12 ENSMUST00000110240.10 |
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| CDS GCA 90 bp | CGCGGGAAACAGCACCCAGCAGTCTGGTCCTGCAGAACTGATGGCTaGAAGCTGTCAAAGGCTTGTATGGCACCATCCAAGCAGGGGTTC | + |
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Preference number: 5 (lower is better) Translates to: RGKQHPAVWSCRTDG*KLSKACMAPSKQGF Trigger: GAACCCCTGCTTGGATGGTGCCATACAAGCCTTTGACAGCTTGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS GCA 90 bp | TACAGCCAGGACACCCGCGGGAAACAGCACCCAGCAGTCTGGTCCTaGAGAACTGATGGCTGCAAGCTGTCAAAGGCTTGTATGGCACCA | + |
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Preference number: 5 (lower is better) Translates to: YSQDTRGKQHPAVWS*RTDGCKLSKACMAP Trigger: TGGTGCCATACAAGCCTTTGACAGCTTGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGTGTCCTGGCTGTA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066958.11 ENSMUST00000110239.8 |
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| CDS-3UTR CAA 90 bp | TCTACACACTGTGTCATAGGTGACAAGCCACGTCAGTGCTGTGACACGGGTAAGCAAGCTGTCAAAGGCTaGTATGGCACCATCCAAGCA | + |
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Preference number: 5 (lower is better) Translates to: STHCVIGDKPRQCCDTGKQAVKG*YGTIQA Trigger: TGCTTGGATGGTGCCATACAAGCCTTTGACAGCTTG...CTTACCCGTGTCACAGCACTGACGTGGCTTGTCACCTATGACACAGTGTGTAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| CDS-3UTR CAA 90 bp | GATCTCCTTAGTGCCTTGTCATCTTGGAAAAGGACAGTTCCAAATTCTAGGAGCTTCCTTGTAAAGAGCTaGCGGAAGGCTTCGCATTCT | + |
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Preference number: 5 (lower is better) Translates to: DLLSALSSWKRTVPNSRSFLVKS*RKASHS Trigger: AGAATGCGAAGCCTTCCGCAAGCTCTTTACAAGGAA...GCTCCTAGAATTTGGAACTGTCCTTTTCCAAGATGACAAGGCACTAAGGAGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110240.10 |
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| CDS CCA 72 bp | CCCGGGCCGGAGAACGCGCAGGCGGGCGCGAAAGTCTaGCGCCGGCGCTCGGCGCACGCGGAGCCTTCGCAG | + |
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Preference number: 6 (lower is better) Translates to: PGPENAQAGAKV*RRRSAHAEPSQ Trigger: CTGCGAAGGCTCCGCGTGCGCCGAGCGCCGGCGCCAGACTTTCGCGCCCGCCTGCGCGTTCTCCGGCCCGGG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110234.8 ENSMUST00000110235.2 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS CCA 72 bp | CGGTCGCGGGAGCCGGGCGCGGGAGCGCATGAGGCCTaGAAGGCAAGGAGACGGGGCCTGCGCGCGCCCGGA | + |
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Preference number: 6 (lower is better) Translates to: RSREPGAGAHEA*KARRRGLRAPG Trigger: TCCGGGCGCGCGCAGGCCCCGTCTCCTTGCCTTCCAGGCCTCATGCGCTCCCGCGCCCGGCTCCCGCGACCG 79% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000110234.8 ENSMUST00000110235.2 |
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| CDS CCA 72 bp | CGGTCGCGGGAGCCGGGCGCGGGAGCGCATGAGGCCTaGAAGGCAAGGAGACGGGGCCGGCACAGGCGGCTG | + |
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Preference number: 6 (lower is better) Translates to: RSREPGAGAHEA*KARRRGRHRRL Trigger: CAGCCGCCTGTGCCGGCCCCGTCTCCTTGCCTTCCAGGCCTCATGCGCTCCCGCGCCCGGCTCCCGCGACCG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS GCA 72 bp | CGGCCTGCCCCCGGGCGCTGCCCGGCCCAGGCATCGTaGCACGTACTCAGAGCGCAGCTGCTGGCACCGCTC | + |
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Preference number: 6 (lower is better) Translates to: RPAPGRCPAQAS*HVLRAQLLAPL Trigger: GAGCGGTGCCAGCAGCTGCGCTCTGAGTACGTGGCACGATGCCTGGGCCGGGCAGCGCCCGGGGGCAGGCCG 76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 6 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110234.8 ENSMUST00000110235.2 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS GCA 72 bp | CCTGGAAGGCAAGGAGACGGGGCCGGCACAGGCGGCTaGGCTCGCAGCGCTCCAGGGGCTCCAGGCAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: PGRQGDGAGTGG*ARSAPGAPGKR Trigger: CCTCTTGCCTGGAGCCCCTGGAGCGCTGCGAGCGCAGCCGCCTGTGCCGGCCCCGTCTCCTTGCCTTCCAGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS GCA 72 bp | CACGCGGAGCCTTCGCAGCCGCAGAAGAGCAGCGCATaGGTGAGCGCCGGAGGCCCACGCGCGAAGAAGCGG | + |
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Preference number: 6 (lower is better) Translates to: HAEPSQPQKSSA*VSAGGPRAKKR Trigger: CCGCTTCTTCGCGCGTGGGCCTCCGGCGCTCACGCATGCGCTGCTCTTCTGCGGCTGCGAAGGCTCCGCGTG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110234.8 ENSMUST00000110235.2 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS CCA 72 bp | TGCGGAAGGCTTCGCATTCTTCGCGCCGGTTTCCACTaGCCGCACAGCCGCACCAGGGCGCAACGCGCGCGC | + |
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Preference number: 6 (lower is better) Translates to: CGRLRILRAGFH*PHSRTRAQRAR Trigger: GCGCGCGCGTTGCGCCCTGGTGCGGCTGTGCGGCCAGTGGAAACCGGCGCGAAGAATGCGAAGCCTTCCGCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS CCA 72 bp | CCCAGGCATCGTGCCACGTACTCAGAGCGCAGCTGCTaGCACCGCTCGTCTGCTGTACACGCCTCGGCCGCG | + |
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Preference number: 6 (lower is better) Translates to: PRHRATYSERSC*HRSSAVHASAA Trigger: CGCGGCCGAGGCGTGTACAGCAGACGAGCGGTGCCAGCAGCTGCGCTCTGAGTACGTGGCACGATGCCTGGG 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110234.8 ENSMUST00000110235.2 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS GCA 72 bp | CACGTACTCAGAGCGCAGCTGCTGGCACCGCTCGTCTaGTGTACACGCCTCGGCCGCGTCCACGCAGCGATT | + |
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Preference number: 6 (lower is better) Translates to: HVLRAQLLAPLV*CTRLGRVHAAI Trigger: AATCGCTGCGTGGACGCGGCCGAGGCGTGTACAGCAGACGAGCGGTGCCAGCAGCTGCGCTCTGAGTACGTG 67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110234.8 ENSMUST00000110235.2 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS GCA 72 bp | TTTCTGCCTCCAGCTCTTCTCAGGCCACTCGTGCCTTaGCCGCGGGAAACAGCACCCAGCAGTCTGGTCCTG | + |
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Preference number: 6 (lower is better) Translates to: FLPPALLRPLVP*PRETAPSSLVL Trigger: CAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGCAAGGCACGAGTGGCCTGAGAAGAGCTGGAGGCAGAAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028787.12 ENSMUST00000110240.10 |
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| CDS GCA 72 bp | GACTGTTTCTGCCTCCAGCTCTTCTCAGGCCACTCGTaGCTTGCCCGCGGGAAACAGCACCCAGCAGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: DCFCLQLFSGHS*LARGKQHPAVW Trigger: CCAGACTGCTGGGTGCTGTTTCCCGCGGGCAAGGCACGAGTGGCCTGAGAAGAGCTGGAGGCAGAAACAGTC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028787.12 ENSMUST00000110240.10 |
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| CDS CAA 72 bp | GTTTCTGCCTCCAGCTCTTCTCAGGCCACTCGTGCCTaGCCCGCGGGAAACAGCACCCAGCAGTCTGGTCCT | + |
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Preference number: 6 (lower is better) Translates to: VSASSSSQATRA*PAGNSTQQSGP Trigger: AGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGCAAGGCACGAGTGGCCTGAGAAGAGCTGGAGGCAGAAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028787.12 ENSMUST00000110240.10 |
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| CDS CAA 90 bp | ACAAGGACTGTTTCTGCCTCCAGCTCTTCTCAGGCCACTCGTGCCTaGCCCGCGGGAAACAGCACCCAGCAGTCTGGTCCTGCAGAACTG | + |
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Preference number: 6 (lower is better) Translates to: TRTVSASSSSQATRA*PAGNSTQQSGPAEL Trigger: CAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGCAAGGCACGAGTGGCCTGAGAAGAGCTGGAGGCAGAAACAGTCCTTGT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028787.12 ENSMUST00000110240.10 |
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| CDS CCA 72 bp | TCGTGCCTTGCCCGCGGGAAACAGCACCCAGCAGTCTaGTCCTGCAGAACTGATGGCTGCAAGCTGTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: SCLARGKQHPAV*SCRTDGCKLSK Trigger: CTTTGACAGCTTGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGCAAGGCACGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028787.12 ENSMUST00000110240.10 |
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| CDS CCA 72 bp | AGCCAGGACACCCGCGGGAAACAGCACCCAGCAGTCTaGTCCTGCAGAACTGATGGCTGCAAGCTGTCAAAG | + |
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Preference number: 6 (lower is better) Translates to: SQDTRGKQHPAV*SCRTDGCKLSK Trigger: CTTTGACAGCTTGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGTGTCCTGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066958.11 ENSMUST00000110239.8 |
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| CDS GCA 72 bp | CTTGCCCGCGGGAAACAGCACCCAGCAGTCTGGTCCTaGAGAACTGATGGCTGCAAGCTGTCAAAGGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: LARGKQHPAVWS*RTDGCKLSKAC Trigger: ACAAGCCTTTGACAGCTTGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGCAAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028787.12 ENSMUST00000110240.10 |
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| CDS GCA 72 bp | GACACCCGCGGGAAACAGCACCCAGCAGTCTGGTCCTaGAGAACTGATGGCTGCAAGCTGTCAAAGGCTTGT | + |
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Preference number: 6 (lower is better) Translates to: DTRGKQHPAVWS*RTDGCKLSKAC Trigger: ACAAGCCTTTGACAGCTTGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCGCGGGTGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000066958.11 ENSMUST00000110239.8 |
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| CDS CAA 90 bp | AAGGCTTGTATGGCACCATCCAAGCAGGGGTTCCTTGTAAAGAGCTaGCGGAAGGCTTCGCATTCTTCGCGCCGGTTTCCACTGGCCGCA | + |
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Preference number: 6 (lower is better) Translates to: KACMAPSKQGFLVKS*RKASHSSRRFPLAA Trigger: TGCGGCCAGTGGAAACCGGCGCGAAGAATGCGAAGCCTTCCGCAAGCTCTTTACAAGGAACCCCTGCTTGGATGGTGCCATACAAGCCTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS TCA 72 bp | CGGGAAACAGCACCCAGCAGTCTGGTCCTGCAGAACTaGTGGCTGCAAGCTGTCAAAGGCTTGTATGGCACC | + |
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Preference number: 6 (lower is better) Translates to: RETAPSSLVLQN*WLQAVKGLYGT Trigger: GGTGCCATACAAGCCTTTGACAGCTTGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTGTTTCCCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS GCA 72 bp | CAGCACCCAGCAGTCTGGTCCTGCAGAACTGATGGCTaGAAGCTGTCAAAGGCTTGTATGGCACCATCCAAG | + |
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Preference number: 6 (lower is better) Translates to: QHPAVWSCRTDG*KLSKACMAPSK Trigger: CTTGGATGGTGCCATACAAGCCTTTGACAGCTTGCAGCCATCAGTTCTGCAGGACCAGACTGCTGGGTGCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS GCA 72 bp | ACACCTTGGGCGTTAGGACAAAACAAGGACTGTTTCTaGCTCCAGCTCTTCTCAGGCCACTCGTGCCTTGCC | + |
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Preference number: 6 (lower is better) Translates to: TPWALGQNKDCF*LQLFSGHSCLA Trigger: GGCAAGGCACGAGTGGCCTGAGAAGAGCTGGAGGCAGAAACAGTCCTTGTTTTGTCCTAACGCCCAAGGTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000028787.12 ENSMUST00000110240.10 |
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| CDS CAA 72 bp | ATGGCACCATCCAAGCAGGGGTTCCTTGTAAAGAGCTaGCGGAAGGCTTCGCATTCTTCGCGCCGGTTTCCA | + |
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Preference number: 6 (lower is better) Translates to: MAPSKQGFLVKS*RKASHSSRRFP Trigger: TGGAAACCGGCGCGAAGAATGCGAAGCCTTCCGCAAGCTCTTTACAAGGAACCCCTGCTTGGATGGTGCCAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000028787.12 ENSMUST00000066958.11 ENSMUST00000110239.8 ENSMUST00000110240.10 |
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| CDS CCA 72 bp | TCTCTGGCTTCCCAGACCCAGGAAAATCGCCTGACCTaGCCTCTCATCCATCAAATGTGCTCTTCTCAACAT | + |
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Preference number: 6 (lower is better) Translates to: SLASQTQENRLT*PLIHQMCSSQH Trigger: ATGTTGAGAAGAGCACATTTGATGGATGAGAGGCCAGGTCAGGCGATTTTCCTGGGTCTGGGAAGCCAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028787.12 ENSMUST00000110234.8 ENSMUST00000110239.8 |
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