Pregenerated sensors for GFRA3 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000024366Ensembl transcript IDs: ENSMUST00000025224.9
Found 104 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTGCGTCTTCTTCCACAGGCTGGCGAGTTCTCTCCCACCACAGGCTaGAAATCAGTCTGGGTGTGGTGGAGAGGACAAAGGACCCTGAGG | + |
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Preference number: 1 (lower is better) Translates to: LRLLPQAGEFSPTTG*KSVWVWWRGQRTLR Trigger: CCTCAGGGTCCTTTGTCCTCTCCACCACACCCAGACTGATTTGCAGCCTGTGGTGGGAGAGAACTCGCCAGCCTGTGGAAGAAGACGCAG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR CCA 90 bp | TCCTGGAGAAGGCAACAGGGAATGACTGATTCCTTAGCCTCTGGGTaGTCCTGGGAAACAGGAAGAAGCGCTGGAGGTGAGCCGCTAATC | + |
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Preference number: 1 (lower is better) Translates to: SWRRQQGMTDSLASG*SWETGRSAGGEPLI Trigger: GATTAGCGGCTCACCTCCAGCGCTTCTTCCTGTTTCCCAGGACCACCCAGAGGCTAAGGAATCAGTCATTCCCTGTTGCCTTCTCCAGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR CCA 90 bp | GGAAACATTTTTCTCAGTCACCTCAGAACCCTTAGCCTGCCTTCCTaGAGAAGGCAACAGGGAATGACTGATTCCTTAGCCTCTGGGTGG | + |
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Preference number: 1 (lower is better) Translates to: GNIFLSHLRTLSLPS*RRQQGMTDSLASGW Trigger: CCACCCAGAGGCTAAGGAATCAGTCATTCCCTGTTGCCTTCTCCAGGAAGGCAGGCTAAGGGTTCTGAGGTGACTGAGAAAAATGTTTCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR CCA 90 bp | AGACACCAGCAGGTTTTTATCTTCCATTCAGAGGGACGTGGAGGCTaGAGCACCAGCCTTCCACACAAAGGAAACATTTTTCTCAGTCAC | + |
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Preference number: 1 (lower is better) Translates to: RHQQVFIFHSEGRGG*STSLPHKGNIFLSH Trigger: GTGACTGAGAAAAATGTTTCCTTTGTGTGGAAGGCTGGTGCTCCAGCCTCCACGTCCCTCTGAATGGAAGATAAAAACCTGCTGGTGTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR CCA 90 bp | GCAGTCAAGACACCAGCAGGTTTTTATCTTCCATTCAGAGGGACGTaGAGGCTGGAGCACCAGCCTTCCACACAAAGGAAACATTTTTCT | + |
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Preference number: 1 (lower is better) Translates to: AVKTPAGFYLPFRGT*RLEHQPSTQRKHFS Trigger: AGAAAAATGTTTCCTTTGTGTGGAAGGCTGGTGCTCCAGCCTCCACGTCCCTCTGAATGGAAGATAAAAACCTGCTGGTGTCTTGACTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR GCA 90 bp | ACAAGACCCAAAGACTTTAGCTCTTCATGCCCAAATGTTCAGGATTaGCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCAT | + |
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Preference number: 1 (lower is better) Translates to: TRPKDFSSSCPNVQD*LAEQSRHQQVFIFH Trigger: ATGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAACATTTGGGCATGAAGAGCTAAAGTCTTTGGGTCTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR-3UTR TCA 90 bp | CTTCCATTCAGAGGGACGTGGAGGCTGGAGCACCAGCCTTCCACACAAAGGAAAGGGGCAAGGGAGGTTTaGAAACTAGCCGCTCAGGAT | + |
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Preference number: 2 (lower is better) Translates to: LPFRGTWRLEHQPSTQRKGAREV*KLAAQD Trigger: ATCCTGAGCGGCTAGTTTTCAAACCTCCCTTGCCCC...TTTCCTTTGTGTGGAAGGCTGGTGCTCCAGCCTCCACGTCCCTCTGAATGGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR-3UTR CCA 90 bp | GTTTTTATCTTCCATTCAGAGGGACGTGGAGGCTGGAGCACCAGCCTTCCACACTCAGTCTGGGTGTGGTaGAGAGGACAAAGGACCCTG | + |
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Preference number: 2 (lower is better) Translates to: VFIFHSEGRGGWSTSLPHSVWVW*RGQRTL Trigger: CAGGGTCCTTTGTCCTCTCCACCACACCCAGACTGA...GTGTGGAAGGCTGGTGCTCCAGCCTCCACGTCCCTCTGAATGGAAGATAAAAAC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR-3UTR GCA 90 bp | AGAAGCGCTGGAGGTGAGCCGCTAATCACCATCAGAACAGAAGGCAAAACTGGATCTCCCACCACAGGCTaGAAATCAGTCTGGGTGTGG | + |
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Preference number: 2 (lower is better) Translates to: RSAGGEPLITIRTEGKTGSPTTG*KSVWVW Trigger: CCACACCCAGACTGATTTGCAGCCTGTGGTGGGAGA...TCCAGTTTTGCCTTCTGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR-3UTR CCA 90 bp | TTGAAAACTAGCCGCTCAGGATCGGAAGGGTCACAGCCCTCACTTCTAAGACCTAAATCAGTCTGGGTGTaGTGGAGAGGACAAAGGACC | + |
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Preference number: 2 (lower is better) Translates to: LKTSRSGSEGSQPSLLRPKSVWV*WRGQRT Trigger: GGTCCTTTGTCCTCTCCACCACACCCAGACTGATTT...AGGTCTTAGAAGTGAGGGCTGTGACCCTTCCGATCCTGAGCGGCTAGTTTTCAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR-3UTR TCA 90 bp | GTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCATGCAACAGGGAATGACTaGTTCCTTAGCCTCTGGGTG | + |
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Preference number: 2 (lower is better) Translates to: VQDCLAEQSRHQQVFIFHATGND*FLSLWV Trigger: CACCCAGAGGCTAAGGAATCAGTCATTCCCTGTTGC...ATGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR-3UTR CCA 90 bp | CCACACAAAGGAAACATTTTTCTCAGTCACCTCAGAACCCTTAGCCTGCCTTCCTCCTTAGCCTCTGGGTaGTCCTGGGAAACAGGAAGA | + |
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Preference number: 2 (lower is better) Translates to: PHKGNIFLSHLRTLSLPSSLASG*SWETGR Trigger: TCTTCCTGTTTCCCAGGACCACCCAGAGGCTAAGGA...GGAAGGCAGGCTAAGGGTTCTGAGGTGACTGAGAAAAATGTTTCCTTTGTGTGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR-3UTR CAA 90 bp | AGCGCTGGAGGTGAGCCGCTAATCACCATCAGAACAGAAGGCAAAACTGGACCCCTGGTTGGTTCCGGGTaGCTGTGTAGCACGCTGCGT | + |
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Preference number: 3 (lower is better) Translates to: SAGGEPLITIRTEGKTGPLVGSG*LCSTLR Trigger: ACGCAGCGTGCTACACAGCAACCCGGAACCAACCAG...GGGTCCAGTTTTGCCTTCTGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR CCA 72 bp | CAGGGAATGACTGATTCCTTAGCCTCTGGGTGGTCCTaGGAAACAGGAAGAAGCGCTGGAGGTGAGCCGCTA | + |
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Preference number: 3 (lower is better) Translates to: QGMTDSLASGWS*ETGRSAGGEPL Trigger: TAGCGGCTCACCTCCAGCGCTTCTTCCTGTTTCCCAGGACCACCCAGAGGCTAAGGAATCAGTCATTCCCTG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR CCA 72 bp | AGGCAACAGGGAATGACTGATTCCTTAGCCTCTGGGTaGTCCTGGGAAACAGGAAGAAGCGCTGGAGGTGAG | + |
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Preference number: 3 (lower is better) Translates to: RQQGMTDSLASG*SWETGRSAGGE Trigger: CTCACCTCCAGCGCTTCTTCCTGTTTCCCAGGACCACCCAGAGGCTAAGGAATCAGTCATTCCCTGTTGCCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR TCA 72 bp | TGGGTGGTCCTGGGAAACAGGAAGAAGCGCTGGAGGTaGGCCGCTAATCACCATCAGAACAGAAGGCAAAAC | + |
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Preference number: 3 (lower is better) Translates to: WVVLGNRKKRWR*AANHHQNRRQN Trigger: GTTTTGCCTTCTGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCTTCTTCCTGTTTCCCAGGACCACCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR CCA 72 bp | TTTCTCAGTCACCTCAGAACCCTTAGCCTGCCTTCCTaGAGAAGGCAACAGGGAATGACTGATTCCTTAGCC | + |
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Preference number: 3 (lower is better) Translates to: FLSHLRTLSLPS*RRQQGMTDSLA Trigger: GGCTAAGGAATCAGTCATTCCCTGTTGCCTTCTCCAGGAAGGCAGGCTAAGGGTTCTGAGGTGACTGAGAAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR CCA 72 bp | ACACCAGCAGGTTTTTATCTTCCATTCAGAGGGACGTaGAGGCTGGAGCACCAGCCTTCCACACAAAGGAAA | + |
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Preference number: 3 (lower is better) Translates to: TPAGFYLPFRGT*RLEHQPSTQRK Trigger: TTTCCTTTGTGTGGAAGGCTGGTGCTCCAGCCTCCACGTCCCTCTGAATGGAAGATAAAAACCTGCTGGTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR GCA 72 bp | AAAGACTTTAGCTCTTCATGCCCAAATGTTCAGGATTaGCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTT | + |
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Preference number: 3 (lower is better) Translates to: KDFSSSCPNVQD*LAEQSRHQQVF Trigger: AAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAACATTTGGGCATGAAGAGCTAAAGTCTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| 3UTR CCA 72 bp | ACTTTAGCTCTTCATGCCCAAATGTTCAGGATTGCCTaGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCT | + |
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Preference number: 3 (lower is better) Translates to: TLALHAQMFRIA*QSSQDTSRFLS Trigger: AGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAACATTTGGGCATGAAGAGCTAAAGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | TCCTGGGAAACAGGAAGAAGCGCTGGAGGTGAGCCGCTAATCACCATCAGAACAAGGCAGAGGTGGCGCTaGCAGCGGATCCCTGAGCAT | + |
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Preference number: 4 (lower is better) Translates to: SWETGRSAGGEPLITIRTRQRWR*QRIPEH Trigger: ATGCTCAGGGATCCGCTGCCAGCGCCACCTCTGCCT...TGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCTTCTTCCTGTTTCCCAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | AGAAGGCAACAGGGAATGACTGATTCCTTAGCCTCTGGGTGGTCCTGGGAAACAACTCGTCCTGTAGGTTaGCGCTGCCTCGGCAGGTGC | + |
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Preference number: 4 (lower is better) Translates to: RRQQGMTDSLASGWSWETTRPVG*RCLGRC Trigger: GCACCTGCCGAGGCAGCGGCAACCTACAGGACGAGT...TGTTTCCCAGGACCACCCAGAGGCTAAGGAATCAGTCATTCCCTGTTGCCTTCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | GGAGCACCAGCCTTCCACACAAAGGAAACATTTTTCTCAGTCACCTCAGAACCCCCTCCCCGTAGGCCTTaGGCAGGCGGTCACACTTGT | + |
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Preference number: 4 (lower is better) Translates to: GAPAFHTKETFFSVTSEPPPRRP*AGGHTC Trigger: ACAAGTGTGACCGCCTGCGCAAGGCCTACGGGGAGG...GGGTTCTGAGGTGACTGAGAAAAATGTTTCCTTTGTGTGGAAGGCTGGTGCTCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | AGCGCTGGAGGTGAGCCGCTAATCACCATCAGAACAGAAGGCAAAACTGGACCCAGCGTGGGACTCTGCTaGCTTCTCAAAGAAGGAGCG | + |
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Preference number: 4 (lower is better) Translates to: SAGGEPLITIRTEGKTGPSVGLC*LLKEGA Trigger: CGCTCCTTCTTTGAGAAGGCAGCAGAGTCCCACGCT...GGGTCCAGTTTTGCCTTCTGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | TTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCATTCAGAGGGAAGGCAGGGCGCAACTaGGGGCGATGGTGTTACGCC | + |
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Preference number: 4 (lower is better) Translates to: LPGRAVKTPAGFYLPFRGKAGRN*GRWCYA Trigger: GGCGTAACACCATCGCCCCCAGTTGCGCCCTGCCTT...CCCTCTGAATGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR TCA 90 bp | GTCTTCTTCCACAGGCTGGCGAGTTCTCTCCCACCACAGGCTGCAAATCAGTCTAGGATGTCCATAGGATaGCAGTGGGTCTGGAAGTCC | + |
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Preference number: 4 (lower is better) Translates to: VFFHRLASSLPPQAANQSRMSIG*QWVWKS Trigger: GGACTTCCAGACCCACTGTCATCCTATGGACATCCT...AGACTGATTTGCAGCCTGTGGTGGGAGAGAACTCGCCAGCCTGTGGAAGAAGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | CTTCCATTCAGAGGGACGTGGAGGCTGGAGCACCAGCCTTCCACACAAAGGAAACTGAGCGTGGGACTCTaGTGCCTTCTCAAAGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: LPFRGTWRLEHQPSTQRKLSVGL*CLLKEG Trigger: TCCTTCTTTGAGAAGGCAGCAGAGTCCCACGCTCAG...TTTCCTTTGTGTGGAAGGCTGGTGCTCCAGCCTCCACGTCCCTCTGAATGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | ATTTTTCTCAGTCACCTCAGAACCCTTAGCCTGCCTTCCTGGAGAAGGCAACAGCCATCAGGCGTGATCTaGACAAAGGGTCCGCACGGC | + |
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Preference number: 4 (lower is better) Translates to: IFLSHLRTLSLPSWRRQQPSGVI*TKGPHG Trigger: GCCGTGCGGACCCTTTGTGCAGATCACGCCTGATGG...CTGTTGCCTTCTCCAGGAAGGCAGGCTAAGGGTTCTGAGGTGACTGAGAAAAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | ATTTTTCTCAGTCACCTCAGAACCCTTAGCCTGCCTTCCTGGAGAAGGCAACAGCCTGTAGGTTGCCGCTaGCTCGGCAGGTGCAGCTTA | + |
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Preference number: 4 (lower is better) Translates to: IFLSHLRTLSLPSWRRQQPVGCR*LGRCSL Trigger: TAAGCTGCACCTGCCGAGGCAGCGGCAACCTACAGG...CTGTTGCCTTCTCCAGGAAGGCAGGCTAAGGGTTCTGAGGTGACTGAGAAAAAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | ATGCCCAAATGTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTGCGGCCTGCTTAAACTaGAGGTGCAGGAGCCCAGGT | + |
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Preference number: 4 (lower is better) Translates to: MPKCSGLPGRAVKTPAGFAACLN*RCRSPG Trigger: ACCTGGGCTCCTGCACCTCCAGTTTAAGCAGGCCGC...AAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAACATTTGGGCAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | CCTTCCTGGAGAAGGCAACAGGGAATGACTGATTCCTTAGCCTCTGGGTGGTCCTCTGGACTGCTCAGTTaGACAAGTCCCAAGGATGTC | + |
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Preference number: 4 (lower is better) Translates to: PSWRRQQGMTDSLASGWSSGLLS*TSPKDV Trigger: GACATCCTTGGGACTTGTGCAACTGAGCAGTCCAGA...GGACCACCCAGAGGCTAAGGAATCAGTCATTCCCTGTTGCCTTCTCCAGGAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | AGCCTGCCTTCCTGGAGAAGGCAACAGGGAATGACTGATTCCTTAGCCTCTGGGCAAACCTGTTCTCTGTaGCAAGGGAGTTTCCTGCTC | + |
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Preference number: 4 (lower is better) Translates to: SLPSWRRQQGMTDSLASGQTCSL*QGSFLL Trigger: GAGCAGGAAACTCCCTTGCCACAGAGAACAGGTTTG...CCCAGAGGCTAAGGAATCAGTCATTCCCTGTTGCCTTCTCCAGGAAGGCAGGCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | GTTTTTATCTTCCATTCAGAGGGACGTGGAGGCTGGAGCACCAGCCTTCCACACTGCTTCATGCGCCGATaGCACCTGCAGTCTATCAGA | + |
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Preference number: 4 (lower is better) Translates to: VFIFHSEGRGGWSTSLPHCFMRR*HLQSIR Trigger: TCTGATAGACTGCAGGTGCCATCGGCGCATGAAGCA...GTGTGGAAGGCTGGTGCTCCAGCCTCCACGTCCCTCTGAATGGAAGATAAAAAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | GGAAACATTTTTCTCAGTCACCTCAGAACCCTTAGCCTGCCTTCCTGGAGAAGGACAGCCCGCATCTTCTaGTGCACAGGGACACAGCAG | + |
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Preference number: 4 (lower is better) Translates to: GNIFLSHLRTLSLPSWRRTARIF*CTGTQQ Trigger: CTGCTGTGTCCCTGTGCACCAGAAGATGCGGGCTGT...CCTTCTCCAGGAAGGCAGGCTAAGGGTTCTGAGGTGACTGAGAAAAATGTTTCC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | ATTTTTCTCAGTCACCTCAGAACCCTTAGCCTGCCTTCCTGGAGAAGGCAACAGGAGTCTGCCCAGTCCTaGGAGAAGAGCTGTCTGTGG | + |
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Preference number: 4 (lower is better) Translates to: IFLSHLRTLSLPSWRRQQESAQS*EKSCLW Trigger: CCACAGACAGCTCTTCTCCCAGGACTGGGCAGACTC...CTGTTGCCTTCTCCAGGAAGGCAGGCTAAGGGTTCTGAGGTGACTGAGAAAAAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | AGAAGCGCTGGAGGTGAGCCGCTAATCACCATCAGAACAGAAGGCAAAACTGGACGCAGACATCTGGACTaGTCAGTTGCACAAGTCCCA | + |
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Preference number: 4 (lower is better) Translates to: RSAGGEPLITIRTEGKTGRRHLD*SVAQVP Trigger: TGGGACTTGTGCAACTGAGCAGTCCAGATGTCTGCG...TCCAGTTTTGCCTTCTGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | TCTTCATGCCCAAATGTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGAAACGCATCTTAGCTaGAATGGCCTCCACGAGGCA | + |
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Preference number: 4 (lower is better) Translates to: SSCPNVQDCLAEQSRHQQETHLS*NGLHEA Trigger: TGCCTCGTGGAGGCCATTGCAGCTAAGATGCGTTTC...CTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAACATTTGGGCATGAAGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | GGAAGAAGCGCTGGAGGTGAGCCGCTAATCACCATCAGAACAGAAGGCAAAACTATGCCCGCAGACATCTaGACTGCTCAGTTGCACAAG | + |
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Preference number: 4 (lower is better) Translates to: GRSAGGEPLITIRTEGKTMPADI*TAQLHK Trigger: CTTGTGCAACTGAGCAGTCCAGATGTCTGCGGGCAT...AGTTTTGCCTTCTGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCTTCTTCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR TCA 90 bp | AGAAGCGCTGGAGGTGAGCCGCTAATCACCATCAGAACAGAAGGCAAAACTGGACGGTCACACTTGTCGTaGAGAGTACACAGCATAGCA | + |
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Preference number: 4 (lower is better) Translates to: RSAGGEPLITIRTEGKTGRSHLS*RVHSIA Trigger: TGCTATGCTGTGTACTCTTCACGACAAGTGTGACCG...TCCAGTTTTGCCTTCTGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCTTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | TGTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCATGCTTAAACTGGAGGTaGAGGAGCCCAGGTGCTGGT | + |
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Preference number: 4 (lower is better) Translates to: CSGLPGRAVKTPAGFYLPCLNWR*RSPGAG Trigger: ACCAGCACCTGGGCTCCTGCACCTCCAGTTTAAGCA...TGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | TGTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCATGCGCCGATGGCACCTaGAGTCTATCAGAGAGCTGT | + |
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Preference number: 4 (lower is better) Translates to: CSGLPGRAVKTPAGFYLPCADGT*SLSESC Trigger: ACAGCTCTCTGATAGACTGCAGGTGCCATCGGCGCA...TGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | TGTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCAAATCAGCCCCAGGTATaGCCGCAGACATCTGGACTG | + |
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Preference number: 4 (lower is better) Translates to: CSGLPGRAVKTPAGFYLPNQPQV*PQTSGL Trigger: CAGTCCAGATGTCTGCGGGCATACCTGGGGCTGATT...TGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAACA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | AGAAGCGCTGGAGGTGAGCCGCTAATCACCATCAGAACAGAAGGCAAAACTGGAGCAGGGTTGCTGTTCTaGTGCTGCACCACTGAAAAA | + |
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Preference number: 4 (lower is better) Translates to: RSAGGEPLITIRTEGKTGAGLLF*CCTTEK Trigger: TTTTTCAGTGGTGCAGCAGCAGAACAGCAACCCTGC...TCCAGTTTTGCCTTCTGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCTTCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | TCTTCATGCCCAAATGTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGCCTCGCATTTCTTTCTaGCCTGGGTACAGCTGTTCA | + |
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Preference number: 4 (lower is better) Translates to: SSCPNVQDCLAEQSRHQQPRISF*PGYSCS Trigger: TGAACAGCTGTACCCAGGCCAGAAAGAAATGCGAGG...CTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAACATTTGGGCATGAAGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | GTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCATGCAGATCCAGGCAATTaGGGGTTACAGAAGGCAGGG | + |
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Preference number: 4 (lower is better) Translates to: VQDCLAEQSRHQQVFIFHADPGN*GLQKAG Trigger: CCCTGCCTTCTGTAACCCCCAATTGCCTGGATCTGC...ATGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | GTTTTTATCTTCCATTCAGAGGGACGTGGAGGCTGGAGCACCAGCCTTCCACACGAGAAGAGCTGTCTGTaGAAACGCATCTTAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: VFIFHSEGRGGWSTSLPHEKSCL*KRILAA Trigger: TGCAGCTAAGATGCGTTTCCACAGACAGCTCTTCTC...GTGTGGAAGGCTGGTGCTCCAGCCTCCACGTCCCTCTGAATGGAAGATAAAAAC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR TCA 90 bp | ATTTTTCTCAGTCACCTCAGAACCCTTAGCCTGCCTTCCTGGAGAAGGCAACAGTCAGAGAGCTGTTCCTaGGTTGTTCTGCTGCCTCTA | + |
|
Preference number: 4 (lower is better) Translates to: IFLSHLRTLSLPSWRRQQSESCS*VVLLPL Trigger: TAGAGGCAGCAGAACAACTCAGGAACAGCTCTCTGA...CTGTTGCCTTCTCCAGGAAGGCAGGCTAAGGGTTCTGAGGTGACTGAGAAAAAT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | AGAAGGCAACAGGGAATGACTGATTCCTTAGCCTCTGGGTGGTCCTGGGAAACATTGCTGTTCTGCTGCTaGACCACTGAAAAAGTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: RRQQGMTDSLASGWSWETLLFCC*TTEKVE Trigger: CTCTACTTTTTCAGTGGTGCAGCAGCAGAACAGCAA...TGTTTCCCAGGACCACCCAGAGGCTAAGGAATCAGTCATTCCCTGTTGCCTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CCA 90 bp | TTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCATTCAGAGGGCTTGCTGATGAAGTTTaGGGTCATGGCAGTCCCAAT | + |
|
Preference number: 4 (lower is better) Translates to: LPGRAVKTPAGFYLPFRGLADEV*GHGSPN Trigger: ATTGGGACTGCCATGACCCCAAACTTCATCAGCAAG...CCCTCTGAATGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR TCA 90 bp | GTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCATTGTGTCTTCATAGGGTaGGACATCCAACTCGTAGTC | + |
|
Preference number: 4 (lower is better) Translates to: VQDCLAEQSRHQQVFIFHCVFIG*DIQLVV Trigger: GACTACGAGTTGGATGTCTCACCCTATGAAGACACA...ATGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | GGAAGAAGCGCTGGAGGTGAGCCGCTAATCACCATCAGAACAGAAGGCAAAACTTCATTTTCCAGGGTTTaGTGGTCACTGTGTCTTCAT | + |
|
Preference number: 4 (lower is better) Translates to: GRSAGGEPLITIRTEGKTSFSRV*WSLCLH Trigger: ATGAAGACACAGTGACCAGCAAACCCTGGAAAATGA...AGTTTTGCCTTCTGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCTTCTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR GCA 90 bp | ATGTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCGGGTTGCTGTTCTGCTaGTGCACCACTGAAAAAGTA | + |
|
Preference number: 4 (lower is better) Translates to: MFRIAWQSSQDTSRFLSSGLLFC*CTTEKV Trigger: TACTTTTTCAGTGGTGCAGCAGCAGAACAGCAACCC...GGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAACAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CCA 90 bp | GGGGGCGATGGTGTTACGCCGCCGCTCCCCACAGCCCGCATCTTCTaGTGCACAGGGACACAGCAGCAGACCCTGAGCGTGGGACTCTGC | + |
|
Preference number: 5 (lower is better) Translates to: GGDGVTPPLPTARIF*CTGTQQQTLSVGLC Trigger: GCAGAGTCCCACGCTCAGGGTCTGCTGCTGTGTCCCTGTGCACCAGAAGATGCGGGCTGTGGGGAGCGGCGGCGTAACACCATCGCCCCC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 90 bp | GGCGATGGTGTTACGCCGCCGCTCCCCACAGCCCGCATCTTCTGGTaGACAGGGACACAGCAGCAGACCCTGAGCGTGGGACTCTGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: GDGVTPPLPTARIFW*TGTQQQTLSVGLCC Trigger: GCAGCAGAGTCCCACGCTCAGGGTCTGCTGCTGTGTCCCTGTGCACCAGAAGATGCGGGCTGTGGGGAGCGGCGGCGTAACACCATCGCC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS TCA 90 bp | CCACAGCCCGCATCTTCTGGTGCACAGGGACACAGCAGCAGACCCTaGGCGTGGGACTCTGCTGCCTTCTCAAAGAAGGAGCGCAGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: PQPASSGAQGHSSRP*AWDSAAFSKKERSW Trigger: CCAGCTGCGCTCCTTCTTTGAGAAGGCAGCAGAGTCCCACGCTCAGGGTCTGCTGCTGTGTCCCTGTGCACCAGAAGATGCGGGCTGTGG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CCA 90 bp | CTGCAGACATGGCAGACTCCTCTAAGGGCAGCGGCCTGCTTAAACTaGAGGTGCAGGAGCCCAGGTGCTGGTAGGCAGCCTTGCAAGCGG | + |
|
Preference number: 5 (lower is better) Translates to: LQTWQTPLRAAACLN*RCRSPGAGRQPCKR Trigger: CCGCTTGCAAGGCTGCCTACCAGCACCTGGGCTCCTGCACCTCCAGTTTAAGCAGGCCGCTGCCCTTAGAGGAGTCTGCCATGTCTGCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CCA 90 bp | TGCACAAAGGGTCCGCACGGCAGAAGCTCCGCAGATCCAGGCAATTaGGGGTTACAGAAGGCAGGGCGCAACTGGGGGCGATGGTGTTAC | + |
|
Preference number: 5 (lower is better) Translates to: CTKGPHGRSSADPGN*GLQKAGRNWGRWCY Trigger: GTAACACCATCGCCCCCAGTTGCGCCCTGCCTTCTGTAACCCCCAATTGCCTGGATCTGCGGAGCTTCTGCCGTGCGGACCCTTTGTGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 90 bp | GGTAGCCTGGGCTGCAGTCTCAGAGCAGGGTTGCTGTTCTGCTGCTaGACCACTGAAAAAGTAGAGTCTGCCCAGTCCTGGGAGAAGAGC | + |
|
Preference number: 5 (lower is better) Translates to: GSLGCSLRAGLLFCC*TTEKVESAQSWEKS Trigger: GCTCTTCTCCCAGGACTGGGCAGACTCTACTTTTTCAGTGGTGCAGCAGCAGAACAGCAACCCTGCTCTGAGACTGCAGCCCAGGCTACC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CAA 90 bp | TCTCCCACCACAGGCTGCAAATCAGTCTGGGTGTGGTGGAGAGGACAAAGGACCGTCCAGACAGGTAGCTaGGTGCTTCATGCGCCGATG | + |
|
Preference number: 5 (lower is better) Translates to: SPTTGCKSVWVWWRGQRTVQTGS*VLHAPM Trigger: CATCGGCGCATGAAGCACCAAGCTACCTGTCTGGAC...GGTCCTTTGTCCTCTCCACCACACCCAGACTGATTTGCAGCCTGTGGTGGGAGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS TCA 90 bp | AAGGATGTCCATAGGATGACAGTGGGTCTGGAAGTCCATCAGGCGTaGTCTGCACAAAGGGTCCGCACGGCAGAAGCTCCGCAGATCCAG | + |
|
Preference number: 5 (lower is better) Translates to: KDVHRMTVGLEVHQA*SAQRVRTAEAPQIQ Trigger: CTGGATCTGCGGAGCTTCTGCCGTGCGGACCCTTTGTGCAGATCACGCCTGATGGACTTCCAGACCCACTGTCATCCTATGGACATCCTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS TCA 90 bp | GGGCTGCAGTCTCAGAGCAGGGTTGCTGTTCTGCTGCTGCACCACTaGAAAAGTAGAGTCTGCCCAGTCCTGGGAGAAGAGCTGTCTGTG | + |
|
Preference number: 5 (lower is better) Translates to: GLQSQSRVAVLLLHH*KSRVCPVLGEELSV Trigger: CACAGACAGCTCTTCTCCCAGGACTGGGCAGACTCTACTTTTTCAGTGGTGCAGCAGCAGAACAGCAACCCTGCTCTGAGACTGCAGCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 90 bp | ATGGGTAGCCTGGGCTGCAGTCTCAGAGCAGGGTTGCTGTTCTGCTaGTGCACCACTGAAAAAGTAGAGTCTGCCCAGTCCTGGGAGAAG | + |
|
Preference number: 5 (lower is better) Translates to: MGSLGCSLRAGLLFC*CTTEKVESAQSWEK Trigger: CTTCTCCCAGGACTGGGCAGACTCTACTTTTTCAGTGGTGCAGCAGCAGAACAGCAACCCTGCTCTGAGACTGCAGCCCAGGCTACCCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 90 bp | AGAATGGGTAGCCTGGGCTGCAGTCTCAGAGCAGGGTTGCTGTTCTaGTGCTGCACCACTGAAAAAGTAGAGTCTGCCCAGTCCTGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: RMGSLGCSLRAGLLF*CCTTEKVESAQSWE Trigger: CTCCCAGGACTGGGCAGACTCTACTTTTTCAGTGGTGCAGCAGCAGAACAGCAACCCTGCTCTGAGACTGCAGCCCAGGCTACCCATTCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS TCA 90 bp | GCTTCATGCGCCGATGGCACCTGCAGTCTATCAGAGAGCTGTTCCTaGGTTGTTCTGCTGCCTCTAGGCAGTCTGCAGACATGGCAGACT | + |
|
Preference number: 5 (lower is better) Translates to: ASCADGTCSLSESCS*VVLLPLGSLQTWQT Trigger: AGTCTGCCATGTCTGCAGACTGCCTAGAGGCAGCAGAACAACTCAGGAACAGCTCTCTGATAGACTGCAGGTGCCATCGGCGCATGAAGC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 90 bp | CCCAATCAGCCCCAGGTATGCCCGCAGACATCTGGACTGCTCAGTTaGACAAGTCCCAAGGATGTCCATAGGATGACAGTGGGTCTGGAA | + |
|
Preference number: 5 (lower is better) Translates to: PNQPQVCPQTSGLLS*TSPKDVHRMTVGLE Trigger: TTCCAGACCCACTGTCATCCTATGGACATCCTTGGGACTTGTGCAACTGAGCAGTCCAGATGTCTGCGGGCATACCTGGGGCTGATTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
||
| CDS-3UTR CAA 90 bp | GTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCATCACTCGTCCTGTAGGTaGCCGCTGCCTCGGCAGGTG | + |
|
Preference number: 5 (lower is better) Translates to: VQDCLAEQSRHQQVFIFHHSSCR*PLPRQV Trigger: CACCTGCCGAGGCAGCGGCAACCTACAGGACGAGTG...ATGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CCA 90 bp | ACTGAAAAAGTAGAGTCTGCCCAGTCCTGGGAGAAGAGCTGTCTGTaGAAACGCATCTTAGCTGCAATGGCCTCCACGAGGCAGGGGTTC | + |
|
Preference number: 5 (lower is better) Translates to: TEKVESAQSWEKSCL*KRILAAMASTRQGF Trigger: GAACCCCTGCCTCGTGGAGGCCATTGCAGCTAAGATGCGTTTCCACAGACAGCTCTTCTCCCAGGACTGGGCAGACTCTACTTTTTCAGT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CAA 90 bp | TTCCACAGGCTGGCGAGTTCTCTCCCACCACAGGCTGCAAATCAGTCTGGGTGTATCTGGACTGCTCAGTaGCACAAGTCCCAAGGATGT | + |
|
Preference number: 5 (lower is better) Translates to: FHRLASSLPPQAANQSGCIWTAQ*HKSQGC Trigger: ACATCCTTGGGACTTGTGCAACTGAGCAGTCCAGAT...ACACCCAGACTGATTTGCAGCCTGTGGTGGGAGAGAACTCGCCAGCCTGTGGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS TCA 90 bp | CATCTGGACTGCTCAGTTGCACAAGTCCCAAGGATGTCCATAGGATaGCAGTGGGTCTGGAAGTCCATCAGGCGTGATCTGCACAAAGGG | + |
|
Preference number: 5 (lower is better) Translates to: HLDCSVAQVPRMSIG*QWVWKSIRRDLHKG Trigger: CCCTTTGTGCAGATCACGCCTGATGGACTTCCAGACCCACTGTCATCCTATGGACATCCTTGGGACTTGTGCAACTGAGCAGTCCAGATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CCA 90 bp | CTGTTCTGCTGCTGCACCACTGAAAAAGTAGAGTCTGCCCAGTCCTaGGAGAAGAGCTGTCTGTGGAAACGCATCTTAGCTGCAATGGCC | + |
|
Preference number: 5 (lower is better) Translates to: LFCCCTTEKVESAQS*EKSCLWKRILAAMA Trigger: GGCCATTGCAGCTAAGATGCGTTTCCACAGACAGCTCTTCTCCCAGGACTGGGCAGACTCTACTTTTTCAGTGGTGCAGCAGCAGAACAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CAA 90 bp | CCACACAAAGGAAACATTTTTCTCAGTCACCTCAGAACCCTTAGCCTGCCTTCCAGTCTCAGAGCAGGGTaGCTGTTCTGCTGCTGCACC | + |
|
Preference number: 5 (lower is better) Translates to: PHKGNIFLSHLRTLSLPSSLRAG*LFCCCT Trigger: GGTGCAGCAGCAGAACAGCAACCCTGCTCTGAGACT...GGAAGGCAGGCTAAGGGTTCTGAGGTGACTGAGAAAAATGTTTCCTTTGTGTGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS TCA 90 bp | AAGATTCATTTTCCAGGGTTTGCTGGTCACTGTGTCTTCATAGGGTaGGACATCCAACTCGTAGTCACCAAGGCTTCGGGCAGGGTGAAC | + |
|
Preference number: 5 (lower is better) Translates to: KIHFPGFAGHCVFIG*DIQLVVTKASGRVN Trigger: GTTCACCCTGCCCGAAGCCTTGGTGACTACGAGTTGGATGTCTCACCCTATGAAGACACAGTGACCAGCAAACCCTGGAAAATGAATCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CAA 90 bp | TCCTGGGAAACAGGAAGAAGCGCTGGAGGTGAGCCGCTAATCACCATCAGAACATTCATTTTCCAGGGTTaGCTGGTCACTGTGTCTTCA | + |
|
Preference number: 5 (lower is better) Translates to: SWETGRSAGGEPLITIRTFIFQG*LVTVSS Trigger: TGAAGACACAGTGACCAGCAAACCCTGGAAAATGAA...TGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCTTCTTCCTGTTTCCCAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CAA 90 bp | AGAAGGCAACAGGGAATGACTGATTCCTTAGCCTCTGGGTGGTCCTGGGAAACAAGGTCCGAGTCTGGTTaGAGCATGTTCAACTTGCTA | + |
|
Preference number: 5 (lower is better) Translates to: RRQQGMTDSLASGWSWETRSESG*SMFNLL Trigger: TAGCAAGTTGAACATGCTCAAACCAGACTCGGACCT...TGTTTCCCAGGACCACCCAGAGGCTAAGGAATCAGTCATTCCCTGTTGCCTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CAA 90 bp | CAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCATTCACACAGCATAGCAAATTaGAGGCAGAGGTCCGAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: QDCLAEQSRHQQVFIFHSHSIAN*RQRSES Trigger: AGACTCGGACCTCTGCCTCAAATTTGCTATGCTGTG...TGAATGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CAA 90 bp | GGAAGAAGCGCTGGAGGTGAGCCGCTAATCACCATCAGAACAGAAGGCAAAACTAAGGCAACAGTAGTGTaGACCTTGCTGATGAAGTTT | + |
|
Preference number: 5 (lower is better) Translates to: GRSAGGEPLITIRTEGKTKATVV*TLLMKF Trigger: AAACTTCATCAGCAAGGTCAACACTACTGTTGCCTT...AGTTTTGCCTTCTGTTCTGATGGTGATTAGCGGCTCACCTCCAGCGCTTCTTCC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS-3UTR CAA 90 bp | GTTCAGGATTGCCTGGCAGAGCAGTCAAGACACCAGCAGGTTTTTATCTTCCATTTGAGCATGTTCAACTaGCTAAGATTCATTTTCCAG | + |
|
Preference number: 5 (lower is better) Translates to: VQDCLAEQSRHQQVFIFHLSMFN*LRFIFQ Trigger: CTGGAAAATGAATCTTAGCAAGTTGAACATGCTCAA...ATGGAAGATAAAAACCTGCTGGTGTCTTGACTGCTCTGCCAGGCAATCCTGAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 72 bp | GTTACGCCGCCGCTCCCCACAGCCCGCATCTTCTGGTaGACAGGGACACAGCAGCAGACCCTGAGCGTGGGA | + |
|
Preference number: 6 (lower is better) Translates to: VTPPLPTARIFW*TGTQQQTLSVG Trigger: TCCCACGCTCAGGGTCTGCTGCTGTGTCCCTGTGCACCAGAAGATGCGGGCTGTGGGGAGCGGCGGCGTAAC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CCA 72 bp | GGTCCGCACGGCAGAAGCTCCGCAGATCCAGGCAATTaGGGGTTACAGAAGGCAGGGCGCAACTGGGGGCGA | + |
|
Preference number: 6 (lower is better) Translates to: GPHGRSSADPGN*GLQKAGRNWGR Trigger: TCGCCCCCAGTTGCGCCCTGCCTTCTGTAACCCCCAATTGCCTGGATCTGCGGAGCTTCTGCCGTGCGGACC 65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CCA 72 bp | TGGGACTCTGCTGCCTTCTCAAAGAAGGAGCGCAGCTaGGCTAGGCAGAGGTGGCGCTGGCAGCGGATCCCT | + |
|
Preference number: 6 (lower is better) Translates to: WDSAAFSKKERS*ARQRWRWQRIP Trigger: AGGGATCCGCTGCCAGCGCCACCTCTGCCTAGCCCAGCTGCGCTCCTTCTTTGAGAAGGCAGCAGAGTCCCA 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 72 bp | GGCAGCGGATCCCTGAGCATGCCTCCCCGTAGGCCTTaGGCAGGCGGTCACACTTGTCGTGAAGAGTACACA | + |
|
Preference number: 6 (lower is better) Translates to: GSGSLSMPPRRP*AGGHTCREEYT Trigger: TGTGTACTCTTCACGACAAGTGTGACCGCCTGCGCAAGGCCTACGGGGAGGCATGCTCAGGGATCCGCTGCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CAA 90 bp | CTGCACAAAGGGTCCGCACGGCAGAAGCTCCGCAGATCCAGGCAATaGGGGGTTACAGAAGGCAGGGCGCAACTGGGGGCGATGGTGTTA | + |
|
Preference number: 6 (lower is better) Translates to: LHKGSARQKLRRSRQ*GVTEGRAQLGAMVL Trigger: TAACACCATCGCCCCCAGTTGCGCCCTGCCTTCTGTAACCCCCAATTGCCTGGATCTGCGGAGCTTCTGCCGTGCGGACCCTTTGTGCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 72 bp | ACTCCTCTAAGGGCAGCGGCCTGCTTAAACTGGAGGTaGAGGAGCCCAGGTGCTGGTAGGCAGCCTTGCAAG | + |
|
Preference number: 6 (lower is better) Translates to: TPLRAAACLNWR*RSPGAGRQPCK Trigger: CTTGCAAGGCTGCCTACCAGCACCTGGGCTCCTGCACCTCCAGTTTAAGCAGGCCGCTGCCCTTAGAGGAGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CAA 90 bp | CCGCTGCCTCGGCAGGTGCAGCTTAAGGCAACAGTAGTGTTGACCTaGCTGATGAAGTTTGGGGTCATGGCAGTCCCAATCAGCCCCAGG | + |
|
Preference number: 6 (lower is better) Translates to: PLPRQVQLKATVVLT*LMKFGVMAVPISPR Trigger: CCTGGGGCTGATTGGGACTGCCATGACCCCAAACTTCATCAGCAAGGTCAACACTACTGTTGCCTTAAGCTGCACCTGCCGAGGCAGCGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS TCA 72 bp | GCATCTTCTGGTGCACAGGGACACAGCAGCAGACCCTaGGCGTGGGACTCTGCTGCCTTCTCAAAGAAGGAG | + |
|
Preference number: 6 (lower is better) Translates to: ASSGAQGHSSRP*AWDSAAFSKKE Trigger: CTCCTTCTTTGAGAAGGCAGCAGAGTCCCACGCTCAGGGTCTGCTGCTGTGTCCCTGTGCACCAGAAGATGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS TCA 72 bp | CATAGGATGACAGTGGGTCTGGAAGTCCATCAGGCGTaGTCTGCACAAAGGGTCCGCACGGCAGAAGCTCCG | + |
|
Preference number: 6 (lower is better) Translates to: HRMTVGLEVHQA*SAQRVRTAEAP Trigger: CGGAGCTTCTGCCGTGCGGACCCTTTGTGCAGATCACGCCTGATGGACTTCCAGACCCACTGTCATCCTATG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 72 bp | GATGACAGTGGGTCTGGAAGTCCATCAGGCGTGATCTaGACAAAGGGTCCGCACGGCAGAAGCTCCGCAGAT | + |
|
Preference number: 6 (lower is better) Translates to: DDSGSGSPSGVI*TKGPHGRSSAD Trigger: ATCTGCGGAGCTTCTGCCGTGCGGACCCTTTGTGCAGATCACGCCTGATGGACTTCCAGACCCACTGTCATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 72 bp | AGGACCTTTCCAGCTGTTCACACTCGTCCTGTAGGTTaGCGCTGCCTCGGCAGGTGCAGCTTAAGGCAACAG | + |
|
Preference number: 6 (lower is better) Translates to: RTFPAVHTRPVG*RCLGRCSLRQQ Trigger: CTGTTGCCTTAAGCTGCACCTGCCGAGGCAGCGGCAACCTACAGGACGAGTGTGAACAGCTGGAAAGGTCCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 72 bp | GTTTGGGGTCATGGCAGTCCCAATCAGCCCCAGGTATaGCCGCAGACATCTGGACTGCTCAGTTGCACAAGT | + |
|
Preference number: 6 (lower is better) Translates to: VWGHGSPNQPQV*PQTSGLLSCTS Trigger: ACTTGTGCAACTGAGCAGTCCAGATGTCTGCGGGCATACCTGGGGCTGATTGGGACTGCCATGACCCCAAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 72 bp | CTGGGAGAAGAGCTGTCTGTGGAAACGCATCTTAGCTaGAATGGCCTCCACGAGGCAGGGGTTCTGGGAGAA | + |
|
Preference number: 6 (lower is better) Translates to: LGEELSVETHLS*NGLHEAGVLGE Trigger: TTCTCCCAGAACCCCTGCCTCGTGGAGGCCATTGCAGCTAAGATGCGTTTCCACAGACAGCTCTTCTCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
||
| CDS GCA 72 bp | CTGGGCTGCAGTCTCAGAGCAGGGTTGCTGTTCTGCTaGTGCACCACTGAAAAAGTAGAGTCTGCCCAGTCC | + |
|
Preference number: 6 (lower is better) Translates to: LGCSLRAGLLFC*CTTEKVESAQS Trigger: GGACTGGGCAGACTCTACTTTTTCAGTGGTGCAGCAGCAGAACAGCAACCCTGCTCTGAGACTGCAGCCCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
||
| CDS GCA 72 bp | AGCCTGGGCTGCAGTCTCAGAGCAGGGTTGCTGTTCTaGTGCTGCACCACTGAAAAAGTAGAGTCTGCCCAG | + |
|
Preference number: 6 (lower is better) Translates to: SLGCSLRAGLLF*CCTTEKVESAQ Trigger: CTGGGCAGACTCTACTTTTTCAGTGGTGCAGCAGCAGAACAGCAACCCTGCTCTGAGACTGCAGCCCAGGCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
||
| CDS CCA 72 bp | CAGTCCCAATCAGCCCCAGGTATGCCCGCAGACATCTaGACTGCTCAGTTGCACAAGTCCCAAGGATGTCCA | + |
|
Preference number: 6 (lower is better) Translates to: QSQSAPGMPADI*TAQLHKSQGCP Trigger: TGGACATCCTTGGGACTTGTGCAACTGAGCAGTCCAGATGTCTGCGGGCATACCTGGGGCTGATTGGGACTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
||
| CDS CCA 72 bp | GTAGAGTCTGCCCAGTCCTGGGAGAAGAGCTGTCTGTaGAAACGCATCTTAGCTGCAATGGCCTCCACGAGG | + |
|
Preference number: 6 (lower is better) Translates to: VESAQSWEKSCL*KRILAAMASTR Trigger: CCTCGTGGAGGCCATTGCAGCTAAGATGCGTTTCCACAGACAGCTCTTCTCCCAGGACTGGGCAGACTCTAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
||
| CDS CAA 90 bp | GCTTCGGGCAGGGTGAACGGTCCAATAAATGTCCAGACAGGTAGCTaGGTGCTTCATGCGCCGATGGCACCTGCAGTCTATCAGAGAGCT | + |
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Preference number: 6 (lower is better) Translates to: ASGRVNGPINVQTGS*VLHAPMAPAVYQRA Trigger: AGCTCTCTGATAGACTGCAGGTGCCATCGGCGCATGAAGCACCAAGCTACCTGTCTGGACATTTATTGGACCGTTCACCCTGCCCGAAGC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 72 bp | CCCCAGGTATGCCCGCAGACATCTGGACTGCTCAGTTaGACAAGTCCCAAGGATGTCCATAGGATGACAGTG | + |
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Preference number: 6 (lower is better) Translates to: PQVCPQTSGLLS*TSPKDVHRMTV Trigger: CACTGTCATCCTATGGACATCCTTGGGACTTGTGCAACTGAGCAGTCCAGATGTCTGCGGGCATACCTGGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS GCA 72 bp | CCAATCAGCCCCAGGTATGCCCGCAGACATCTGGACTaGTCAGTTGCACAAGTCCCAAGGATGTCCATAGGA | + |
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Preference number: 6 (lower is better) Translates to: PISPRYARRHLD*SVAQVPRMSIG Trigger: TCCTATGGACATCCTTGGGACTTGTGCAACTGAGCAGTCCAGATGTCTGCGGGCATACCTGGGGCTGATTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CCA 72 bp | ATGTCCAGACAGGTAGCTTGGTGCTTCATGCGCCGATaGCACCTGCAGTCTATCAGAGAGCTGTTCCTGAGT | + |
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Preference number: 6 (lower is better) Translates to: MSRQVAWCFMRR*HLQSIRELFLS Trigger: ACTCAGGAACAGCTCTCTGATAGACTGCAGGTGCCATCGGCGCATGAAGCACCAAGCTACCTGTCTGGACAT 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CAA 72 bp | CTGCCTCGGCAGGTGCAGCTTAAGGCAACAGTAGTGTaGACCTTGCTGATGAAGTTTGGGGTCATGGCAGTC | + |
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Preference number: 6 (lower is better) Translates to: LPRQVQLKATVV*TLLMKFGVMAV Trigger: GACTGCCATGACCCCAAACTTCATCAGCAAGGTCAACACTACTGTTGCCTTAAGCTGCACCTGCCGAGGCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CAA 90 bp | GAGAAAGAAAGAATGGGTAGCCTGGGCTGCAGTCTCAGAGCAGGGTaGCTGTTCTGCTGCTGCACCACTGAAAAAGTAGAGTCTGCCCAG | + |
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Preference number: 6 (lower is better) Translates to: EKERMGSLGCSLRAG*LFCCCTTEKVESAQ Trigger: CTGGGCAGACTCTACTTTTTCAGTGGTGCAGCAGCAGAACAGCAACCCTGCTCTGAGACTGCAGCCCAGGCTACCCATTCTTTCTTTCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS TCA 72 bp | TTTCCAGGGTTTGCTGGTCACTGTGTCTTCATAGGGTaGGACATCCAACTCGTAGTCACCAAGGCTTCGGGC | + |
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Preference number: 6 (lower is better) Translates to: FPGFAGHCVFIG*DIQLVVTKASG Trigger: GCCCGAAGCCTTGGTGACTACGAGTTGGATGTCTCACCCTATGAAGACACAGTGACCAGCAAACCCTGGAAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CAA 72 bp | AGGGTGAACGGTCCAATAAATGTCCAGACAGGTAGCTaGGTGCTTCATGCGCCGATGGCACCTGCAGTCTAT | + |
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Preference number: 6 (lower is better) Translates to: RVNGPINVQTGS*VLHAPMAPAVY Trigger: ATAGACTGCAGGTGCCATCGGCGCATGAAGCACCAAGCTACCTGTCTGGACATTTATTGGACCGTTCACCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CAA 72 bp | CGGCAGGTGCAGCTTAAGGCAACAGTAGTGTTGACCTaGCTGATGAAGTTTGGGGTCATGGCAGTCCCAATC | + |
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Preference number: 6 (lower is better) Translates to: RQVQLKATVVLT*LMKFGVMAVPI Trigger: GATTGGGACTGCCATGACCCCAAACTTCATCAGCAAGGTCAACACTACTGTTGCCTTAAGCTGCACCTGCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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| CDS CCA 72 bp | TTGCAAGCGGGATTAGCCTCGCATTTCTTTCTGGCCTaGGTACAGCTGTTCACAAACCTGTTCTCTGTGGCA | + |
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Preference number: 6 (lower is better) Translates to: LQAGLASHFFLA*VQLFTNLFSVA Trigger: TGCCACAGAGAACAGGTTTGTGAACAGCTGTACCCAGGCCAGAAAGAAATGCGAGGCTAATCCCGCTTGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000025224.9 |
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