Pregenerated sensors for GEMIN7 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044709Ensembl transcript IDs: ENSMUST00000051364.4, ENSMUST00000117222.2, ENSMUST00000119912.2, ENSMUST00000122055.2, ENSMUST00000122127.2, ENSMUST00000151646.2, ENSMUST00000208826.2
Found 42 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCAGAGCCAGGGTTATCTGCATCCTGCACCAGGCAGTATCTGGTTTaGAGTTCCTCTGAGTTCAAAGCCAGAGTTTGTTGGAGATTGCTT | + |
|
Preference number: 1 (lower is better) Translates to: SEPGLSASCTRQYLV*SSSEFKARVCWRLL Trigger: AAGCAATCTCCAACAAACTCTGGCTTTGAACTCAGAGGAACTCCAAACCAGATACTGCCTGGTGCAGGATGCAGATAACCCTGGCTCTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122127.2 |
||
| 3UTR TCA 90 bp | GTTATCTGCATCCTGCACCAGGCAGTATCTGGTTTGGAGTTCCTCTaGGTTCAAAGCCAGAGTTTGTTGGAGATTGCTTTGGAAGTCCAG | + |
|
Preference number: 1 (lower is better) Translates to: VICILHQAVSGLEFL*VQSQSLLEIALEVQ Trigger: CTGGACTTCCAAAGCAATCTCCAACAAACTCTGGCTTTGAACTCAGAGGAACTCCAAACCAGATACTGCCTGGTGCAGGATGCAGATAAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122127.2 |
||
| 3UTR-3UTR GCA 90 bp | GATCTAGAATGTCTGAGGTTGCCGTCCCCCACTGCCGCACAGCCTGGCCTTGAGGGGCTACTGTGGCAATaGCCACAGGAAAATGGCAGA | + |
|
Preference number: 2 (lower is better) Translates to: DLECLRLPSPTAAQPGLEGLLWQ*PQENGR Trigger: TCTGCCATTTTCCTGTGGGCATTGCCACAGTAGCCC...CTCAAGGCCAGGCTGTGCGGCAGTGGGGGACGGCAACCTCAGACATTCTAGATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 |
||
| 3UTR-3UTR GCA 90 bp | GAGTTCAAAGCCAGAGTTTGTTGGAGATTGCTTTGGAAGTCCAGGAAGGCGCTGGGGCTACTGTGGCAATaGCCACAGGAAAATGGCAGA | + |
|
Preference number: 2 (lower is better) Translates to: EFKARVCWRLLWKSRKALGLLWQ*PQENGR Trigger: TCTGCCATTTTCCTGTGGGCATTGCCACAGTAGCCC...CAGCGCCTTCCTGGACTTCCAAAGCAATCTCCAACAAACTCTGGCTTTGAACTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| 3UTR CAA 90 bp | CTGGTTTGGAGTTCCTCTGAGTTCAAAGCCAGAGTTTGTTGGAGATaGCTTTGGAAGTCCAGGAAGGCGCTGAGAACTCTATGTCCCAGG | + |
|
Preference number: 2 (lower is better) Translates to: LVWSSSEFKARVCWR*LWKSRKALRTLCPR Trigger: CCTGGGACATAGAGTTCTCAGCGCCTTCCTGGACTTCCAAAGCAATCTCCAACAAACTCTGGCTTTGAACTCAGAGGAACTCCAAACCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| 3UTR-3UTR CCA 90 bp | ATTTATTTCTGTGACGCTCAGTGTGTGAAGCAGAACACTCCTTCCAACAAGAGAAGGCAGTATCTGGTTTaGAGTTCCTCTGAGTTCAAA | + |
|
Preference number: 2 (lower is better) Translates to: IYFCDAQCVKQNTPSNKRRQYLV*SSSEFK Trigger: TTTGAACTCAGAGGAACTCCAAACCAGATACTGCCT...TCTCTTGTTGGAAGGAGTGTTCTGCTTCACACACTGAGCGTCACAGAAATAAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 |
||
| 3UTR TCA 72 bp | GAGGTTGCCGTCCCCCACTGCCGCACAGCCTGGCCTTaGGTTTATGATCTTCCCACCTCTTCAGAGCCAGGG | + |
|
Preference number: 3 (lower is better) Translates to: EVAVPHCRTAWP*VYDLPTSSEPG Trigger: CCCTGGCTCTGAAGAGGTGGGAAGATCATAAACTCAAGGCCAGGCTGTGCGGCAGTGGGGGACGGCAACCTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 |
||
| 3UTR GCA 72 bp | CTTCCCACCTCTTCAGAGCCAGGGTTATCTGCATCCTaGACCAGGCAGTATCTGGTTTGGAGTTCCTCTGAG | + |
|
Preference number: 3 (lower is better) Translates to: LPTSSEPGLSAS*TRQYLVWSSSE Trigger: CTCAGAGGAACTCCAAACCAGATACTGCCTGGTGCAGGATGCAGATAACCCTGGCTCTGAAGAGGTGGGAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 |
||
| 3UTR-3UTR CAA 90 bp | AGGTTGCCGTCCCCCACTGCCGCACAGCCTGGCCTTGAGTTTATGATCTTCCCACAAAGCCAGAGTTTGTaGGAGATTGCTTTGGAAGTC | + |
|
Preference number: 3 (lower is better) Translates to: RLPSPTAAQPGLEFMIFPQSQSL*EIALEV Trigger: GACTTCCAAAGCAATCTCCAACAAACTCTGGCTTTG...TGGGAAGATCATAAACTCAAGGCCAGGCTGTGCGGCAGTGGGGGACGGCAACCT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 |
||
| 3UTR-3UTR CAA 90 bp | GATCTAGAATGTCTGAGGTTGCCGTCCCCCACTGCCGCACAGCCTGGCCTTGAGGTTCAAAGCCAGAGTTaGTTGGAGATTGCTTTGGAA | + |
|
Preference number: 3 (lower is better) Translates to: DLECLRLPSPTAAQPGLEVQSQS*LEIALE Trigger: TTCCAAAGCAATCTCCAACAAACTCTGGCTTTGAAC...CTCAAGGCCAGGCTGTGCGGCAGTGGGGGACGGCAACCTCAGACATTCTAGATC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 |
||
| 3UTR CCA 72 bp | TCTGAGTTCAAAGCCAGAGTTTGTTGGAGATTGCTTTaGAAGTCCAGGAAGGCGCTGAGAACTCTATGTCCC | + |
|
Preference number: 3 (lower is better) Translates to: SEFKARVCWRLL*KSRKALRTLCP Trigger: GGGACATAGAGTTCTCAGCGCCTTCCTGGACTTCCAAAGCAATCTCCAACAAACTCTGGCTTTGAACTCAGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| 3UTR CCA 72 bp | GTTTGGAGTTCCTCTGAGTTCAAAGCCAGAGTTTGTTaGAGATTGCTTTGGAAGTCCAGGAAGGCGCTGAGA | + |
|
Preference number: 3 (lower is better) Translates to: VWSSSEFKARVC*RLLWKSRKALR Trigger: TCTCAGCGCCTTCCTGGACTTCCAAAGCAATCTCCAACAAACTCTGGCTTTGAACTCAGAGGAACTCCAAAC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| 3UTR TCA 72 bp | ATCCTGCACCAGGCAGTATCTGGTTTGGAGTTCCTCTaGGTTCAAAGCCAGAGTTTGTTGGAGATTGCTTTG | + |
|
Preference number: 3 (lower is better) Translates to: ILHQAVSGLEFL*VQSQSLLEIAL Trigger: CAAAGCAATCTCCAACAAACTCTGGCTTTGAACTCAGAGGAACTCCAAACCAGATACTGCCTGGTGCAGGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | AGGTTGCCGTCCCCCACTGCCGCACAGCCTGGCCTTGAGTTTATGATCTTCCCACAGGGTGCCCCACCATaGCTAGGAGGCTGCGGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: RLPSPTAAQPGLEFMIFPQGAPP*LGGCGG Trigger: ACCTCCGCAGCCTCCTAGCCATGGTGGGGCACCCTG...TGGGAAGATCATAAACTCAAGGCCAGGCTGTGCGGCAGTGGGGGACGGCAACCT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 |
||
| CDS-3UTR TCA 90 bp | ACTCTATGTCCCAGGAATAGTCAGAGGCCTGGGCTACTGTGGCAATGCCCACAGAGGCAAAGCCTCTGCTaGAGCCATCGGGGCCCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: TLCPRNSQRPGLLWQCPQRQSLC*SHRGPE Trigger: CTCGGGGCCCCGATGGCTTCAGCAGAGGCTTTGCCT...CTGTGGGCATTGCCACAGTAGCCCAGGCCTCTGACTATTCCTGGGACATAGAGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR TCA 90 bp | TTGCTTTGGAAGTCCAGGAAGGCGCTGAGAACTCTATGTCCCAGGAATAGTCAGAGGCAAAGCCTCTGCTaGAGCCATCGGGGCCCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: LLWKSRKALRTLCPRNSQRQSLC*SHRGPE Trigger: CTCGGGGCCCCGATGGCTTCAGCAGAGGCTTTGCCT...CTGACTATTCCTGGGACATAGAGTTCTCAGCGCCTTCCTGGACTTCCAAAGCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR TCA 90 bp | CCAGGAATAGTCAGAGGCCTGGGCTACTGTGGCAATGCCCACAGGAAAATGGCAGGCCCGCTGTTCCTGTaGCTCTGGGGGATCTTGAAT | + |
|
Preference number: 4 (lower is better) Translates to: PGIVRGLGYCGNAHRKMAGPLFL*LWGILN Trigger: ATTCAAGATCCCCCAGAGTCACAGGAACAGCGGGCC...TGCCATTTTCCTGTGGGCATTGCCACAGTAGCCCAGGCCTCTGACTATTCCTGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| 3UTR CAA 72 bp | ACTCCTTCCAACAAGAGAGATCTAGAATGTCTGAGGTaGCCGTCCCCCACTGCCGCACAGCCTGGCCTTGAG | + |
|
Preference number: 4 (lower is better) Translates to: TPSNKRDLECLR*PSPTAAQPGLE Trigger: CTCAAGGCCAGGCTGTGCGGCAGTGGGGGACGGCAACCTCAGACATTCTAGATCTCTCTTGTTGGAAGGAGT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 |
||
| CDS-3UTR TCA 90 bp | AGATTGCTTTGGAAGTCCAGGAAGGCGCTGAGAACTCTATGTCCCAGGAATAGTAGGCAAAGCCTCTGCTaGAGCCATCGGGGCCCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: RLLWKSRKALRTLCPRNSRQSLC*SHRGPE Trigger: CTCGGGGCCCCGATGGCTTCAGCAGAGGCTTTGCCT...ACTATTCCTGGGACATAGAGTTCTCAGCGCCTTCCTGGACTTCCAAAGCAATCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | ATAGTCAGAGGCCTGGGCTACTGTGGCAATGCCCACAGGAAAATGGCAGACAGTCCACATCCAGGTCTGTaGCTCCAAACTGGGCGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: IVRGLGYCGNAHRKMADSPHPGL*LQTGRS Trigger: TGACCGCCCAGTTTGGAGCCACAGACCTGGATGTGG...ACTGTCTGCCATTTTCCTGTGGGCATTGCCACAGTAGCCCAGGCCTCTGACTAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR TCA 90 bp | TGTGAAGCAGAACACTCCTTCCAACAAGAGAGATCTAGAATGTCTGAGGTTGCCAGGCAAAGCCTCTGCTaGAGCCATCGGGGCCCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: CEAEHSFQQERSRMSEVARQSLC*SHRGPE Trigger: CTCGGGGCCCCGATGGCTTCAGCAGAGGCTTTGCCT...GGCAACCTCAGACATTCTAGATCTCTCTTGTTGGAAGGAGTGTTCTGCTTCACA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 |
||
| CDS-3UTR CCA 90 bp | AGGAAGGCGCTGAGAACTCTATGTCCCAGGAATAGTCAGAGGCCTGGGCTACTGGGGAAACGTAGAAGTTaGCCACATCCAGGTCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: RKALRTLCPRNSQRPGLLGKRRS*PHPGLW Trigger: CCACAGACCTGGATGTGGCCAACTTCTACGTTTCCC...CAGTAGCCCAGGCCTCTGACTATTCCTGGGACATAGAGTTCTCAGCGCCTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | GAGCCAGGGTTATCTGCATCCTGCACCAGGCAGTATCTGGTTTGGAGTTCCTCTCTTCTGGTCTCAGGATaGTCCTACGTCCATCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: EPGLSASCTRQYLVWSSSLLVSG*SYVHQR Trigger: CCTCTGATGGACGTAGGACCATCCTGAGACCAGAAG...AGAGGAACTCCAAACCAGATACTGCCTGGTGCAGGATGCAGATAACCCTGGCTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | CAGAGCCAGGGTTATCTGCATCCTGCACCAGGCAGTATCTGGTTTGGAGTTCCTGGGAAACGTAGAAGTTaGCCACATCCAGGTCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: QSQGYLHPAPGSIWFGVPGKRRS*PHPGLW Trigger: CCACAGACCTGGATGTGGCCAACTTCTACGTTTCCC...AGGAACTCCAAACCAGATACTGCCTGGTGCAGGATGCAGATAACCCTGGCTCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | CTGAGAACTCTATGTCCCAGGAATAGTCAGAGGCCTGGGCTACTGTGGCAATGCCGGCCTGTACACCTATaGGAGTCTGCAGTTGGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: LRTLCPRNSQRPGLLWQCRPVHL*ESAVGK Trigger: TTTCCCAACTGCAGACTCCCATAGGTGTACAGGCCG...GCATTGCCACAGTAGCCCAGGCCTCTGACTATTCCTGGGACATAGAGTTCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | TCAGAGCCAGGGTTATCTGCATCCTGCACCAGGCAGTATCTGGTTTGGAGTTCCCGGCCTGTACACCTATaGGAGTCTGCAGTTGGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: SEPGLSASCTRQYLVWSSRPVHL*ESAVGK Trigger: TTTCCCAACTGCAGACTCCCATAGGTGTACAGGCCG...GGAACTCCAAACCAGATACTGCCTGGTGCAGGATGCAGATAACCCTGGCTCTGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | CTTTGGAAGTCCAGGAAGGCGCTGAGAACTCTATGTCCCAGGAATAGTCAGAGGCTTCTGGTCTCAGGATaGTCCTACGTCCATCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LWKSRKALRTLCPRNSQRLLVSG*SYVHQR Trigger: CCTCTGATGGACGTAGGACCATCCTGAGACCAGAAG...CCTCTGACTATTCCTGGGACATAGAGTTCTCAGCGCCTTCCTGGACTTCCAAAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | GTGAAGCAGAACACTCCTTCCAACAAGAGAGATCTAGAATGTCTGAGGTTGCCGCCACATCCAGGTCTGTaGCTCCAAACTGGGCGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: VKQNTPSNKRDLECLRLPPHPGL*LQTGRS Trigger: TGACCGCCCAGTTTGGAGCCACAGACCTGGATGTGG...CGGCAACCTCAGACATTCTAGATCTCTCTTGTTGGAAGGAGTGTTCTGCTTCAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 |
||
| CDS-3UTR CCA 90 bp | TTCAAAGCCAGAGTTTGTTGGAGATTGCTTTGGAAGTCCAGGAAGGCGCTGAGACCACATCCAGGTCTGTaGCTCCAAACTGGGCGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: FKARVCWRLLWKSRKALRPHPGL*LQTGRS Trigger: TGACCGCCCAGTTTGGAGCCACAGACCTGGATGTGG...TCTCAGCGCCTTCCTGGACTTCCAAAGCAATCTCCAACAAACTCTGGCTTTGAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | TTGCTTTGGAAGTCCAGGAAGGCGCTGAGAACTCTATGTCCCAGGAATAGTCAGCTTCTGGTCTCAGGATaGTCCTACGTCCATCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: LLWKSRKALRTLCPRNSQLLVSG*SYVHQR Trigger: CCTCTGATGGACGTAGGACCATCCTGAGACCAGAAG...CTGACTATTCCTGGGACATAGAGTTCTCAGCGCCTTCCTGGACTTCCAAAGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | TCCTGCACCAGGCAGTATCTGGTTTGGAGTTCCTCTGAGTTCAAAGCCAGAGTTCTTCTGGTCTCAGGATaGTCCTACGTCCATCAGAGG | + |
|
Preference number: 4 (lower is better) Translates to: SCTRQYLVWSSSEFKARVLLVSG*SYVHQR Trigger: CCTCTGATGGACGTAGGACCATCCTGAGACCAGAAG...AACTCTGGCTTTGAACTCAGAGGAACTCCAAACCAGATACTGCCTGGTGCAGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | AGAGTTTGTTGGAGATTGCTTTGGAAGTCCAGGAAGGCGCTGAGAACTCTATGTCCACATCCAGGTCTGTaGCTCCAAACTGGGCGGTCA | + |
|
Preference number: 4 (lower is better) Translates to: RVCWRLLWKSRKALRTLCPHPGL*LQTGRS Trigger: TGACCGCCCAGTTTGGAGCCACAGACCTGGATGTGG...ACATAGAGTTCTCAGCGCCTTCCTGGACTTCCAAAGCAATCTCCAACAAACTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | TTGCTTTGGAAGTCCAGGAAGGCGCTGAGAACTCTATGTCCCAGGAATAGTCAGCGGCCTGTACACCTATaGGAGTCTGCAGTTGGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: LLWKSRKALRTLCPRNSQRPVHL*ESAVGK Trigger: TTTCCCAACTGCAGACTCCCATAGGTGTACAGGCCG...CTGACTATTCCTGGGACATAGAGTTCTCAGCGCCTTCCTGGACTTCCAAAGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | GTGAAGCAGAACACTCCTTCCAACAAGAGAGATCTAGAATGTCTGAGGTTGCCGGGGAAACGTAGAAGTTaGCCACATCCAGGTCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: VKQNTPSNKRDLECLRLPGKRRS*PHPGLW Trigger: CCACAGACCTGGATGTGGCCAACTTCTACGTTTCCC...CGGCAACCTCAGACATTCTAGATCTCTCTTGTTGGAAGGAGTGTTCTGCTTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 |
||
| CDS-3UTR CCA 90 bp | AGATTGCTTTGGAAGTCCAGGAAGGCGCTGAGAACTCTATGTCCCAGGAATAGTGGGAAACGTAGAAGTTaGCCACATCCAGGTCTGTGG | + |
|
Preference number: 4 (lower is better) Translates to: RLLWKSRKALRTLCPRNSGKRRS*PHPGLW Trigger: CCACAGACCTGGATGTGGCCAACTTCTACGTTTCCC...ACTATTCCTGGGACATAGAGTTCTCAGCGCCTTCCTGGACTTCCAAAGCAATCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS-3UTR CCA 90 bp | AGAGTTTGTTGGAGATTGCTTTGGAAGTCCAGGAAGGCGCTGAGAACTCTATGTCGGCCTGTACACCTATaGGAGTCTGCAGTTGGGAAA | + |
|
Preference number: 4 (lower is better) Translates to: RVCWRLLWKSRKALRTLCRPVHL*ESAVGK Trigger: TTTCCCAACTGCAGACTCCCATAGGTGTACAGGCCG...ACATAGAGTTCTCAGCGCCTTCCTGGACTTCCAAAGCAATCTCCAACAAACTCT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| 3UTR CAA 72 bp | AGTTCCTCTGAGTTCAAAGCCAGAGTTTGTTGGAGATaGCTTTGGAAGTCCAGGAAGGCGCTGAGAACTCTA | + |
|
Preference number: 4 (lower is better) Translates to: SSSEFKARVCWR*LWKSRKALRTL Trigger: TAGAGTTCTCAGCGCCTTCCTGGACTTCCAAAGCAATCTCCAACAAACTCTGGCTTTGAACTCAGAGGAACT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000122055.2 ENSMUST00000122127.2 |
||
| CDS TCA 90 bp | GCGGAGGTAGCGCTCTCGCAGAGTGGCTCGGGCCCGCTGTTCCTGTaGCTCTGGGGGATCTTGAATATGACCTTCTCCGACTTCTGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: AEVALSQSGSGPLFL*LWGILNMTFSDFWS Trigger: AGACCAGAAGTCGGAGAAGGTCATATTCAAGATCCCCCAGAGTCACAGGAACAGCGGGCCCGAGCCACTCTGCGAGAGCGCTACCTCCGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000119912.2 ENSMUST00000122055.2 ENSMUST00000122127.2 ENSMUST00000151646.2 ENSMUST00000208826.2 |
||
| CDS TCA 72 bp | GGATGGTCCTACGTCCATCAGAGGCAAAGCCTCTGCTaGAGCCATCGGGGCCCCGAGGGAGGCGCAGCACTG | + |
|
Preference number: 6 (lower is better) Translates to: GWSYVHQRQSLC*SHRGPEGGAAL Trigger: CAGTGCTGCGCCTCCCTCGGGGCCCCGATGGCTTCAGCAGAGGCTTTGCCTCTGATGGACGTAGGACCATCC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 7 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000119912.2 ENSMUST00000122055.2 ENSMUST00000122127.2 ENSMUST00000151646.2 ENSMUST00000208826.2 |
||
| CDS TCA 72 bp | GCGCTCTCGCAGAGTGGCTCGGGCCCGCTGTTCCTGTaGCTCTGGGGGATCTTGAATATGACCTTCTCCGAC | + |
|
Preference number: 6 (lower is better) Translates to: ALSQSGSGPLFL*LWGILNMTFSD Trigger: GTCGGAGAAGGTCATATTCAAGATCCCCCAGAGTCACAGGAACAGCGGGCCCGAGCCACTCTGCGAGAGCGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000119912.2 ENSMUST00000122055.2 ENSMUST00000122127.2 ENSMUST00000151646.2 ENSMUST00000208826.2 |
||
| CDS TCA 72 bp | CAAACTGGGCGGTCACATGCACACCTTCGTGCAGCGTaGAACTCACAGGGTGCCCCACCATGGCTAGGAGGC | + |
|
Preference number: 6 (lower is better) Translates to: QTGRSHAHLRAA*NSQGAPPWLGG Trigger: GCCTCCTAGCCATGGTGGGGCACCCTGTGAGTTTCACGCTGCACGAAGGTGTGCATGTGACCGCCCAGTTTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000119912.2 ENSMUST00000122055.2 ENSMUST00000122127.2 ENSMUST00000208826.2 |
||
| CDS CCA 72 bp | CTCTGGGGGATCTTGAATATGACCTTCTCCGACTTCTaGTCTCAGGATGGTCCTACGTCCATCAGAGGCAAA | + |
|
Preference number: 6 (lower is better) Translates to: LWGILNMTFSDF*SQDGPTSIRGK Trigger: TTTGCCTCTGATGGACGTAGGACCATCCTGAGACCAGAAGTCGGAGAAGGTCATATTCAAGATCCCCCAGAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 7 transcripts: ENSMUST00000051364.4 ENSMUST00000117222.2 ENSMUST00000119912.2 ENSMUST00000122055.2 ENSMUST00000122127.2 ENSMUST00000151646.2 ENSMUST00000208826.2 |
||