Pregenerated sensors for GEMIN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060121Ensembl transcript IDs: ENSMUST00000021379.8
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TCAAATCTATATTTTGAATATCAGCTTGAGCTGCAGATTAAGATGAAGCCCTTCAATCTGTCCTCAGGTTaGAACTGTGTTTCTCAGACT | + |
|
Preference number: 2 (lower is better) Translates to: SNLYFEYQLELQIKMKPFNLSSG*NCVSQT Trigger: AGTCTGAGAAACACAGTTCCAACCTGAGGACAGATT...GAAGGGCTTCATCTTAATCTGCAGCTCAAGCTGATATTCAAAATATAGATTTGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021379.8 |
||
| 3UTR GCA 72 bp | GAACACTGGATTAGTCTTGTCGACTATGAACAGATTTaGCATTTCATCTGTATGAACTTCAACTCTAAAGAC | + |
|
Preference number: 3 (lower is better) Translates to: EHWISLVDYEQI*HFICMNFNSKD Trigger: GTCTTTAGAGTTGAAGTTCATACAGATGAAATGGCAAATCTGTTCATAGTCGACAAGACTAATCCAGTGTTC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021379.8 |
||
| 3UTR TCA 72 bp | TTGTCGACTATGAACAGATTTGCCATTTCATCTGTATaGACTTCAACTCTAAAGACATCCAGTGTCTTTTAT | + |
|
Preference number: 3 (lower is better) Translates to: LSTMNRFAISSV*TSTLKTSSVFY Trigger: ATAAAAGACACTGGATGTCTTTAGAGTTGAAGTTCATACAGATGAAATGGCAAATCTGTTCATAGTCGACAA 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021379.8 |
||
| CDS-3UTR GCA 90 bp | CAATTGCTCATCAGATACCAAATGGGCTTTTTCACAGACATTTCAGACACTTTATTTCGTCATCTTTACTaGCCACCAGCAGCCTCACTT | + |
|
Preference number: 4 (lower is better) Translates to: QLLIRYQMGFFTDISDTLFRHLY*PPAASL Trigger: AAGTGAGGCTGCTGGTGGGCAGTAAAGATGACGAAA...TAAAGTGTCTGAAATGTCTGTGAAAAAGCCCATTTGGTATCTGATGAGCAATTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021379.8 |
||
| CDS-3UTR TCA 90 bp | TCAAATCTATATTTTGAATATCAGCTTGAGCTGCAGATTAAGATGAAGCCCTTCTGTCGGATTAGTGAATaGGCCTCAGGTAATAAAGGC | + |
|
Preference number: 4 (lower is better) Translates to: SNLYFEYQLELQIKMKPFCRISE*ASGNKG Trigger: GCCTTTATTACCTGAGGCTCATTCACTAATCCGACA...GAAGGGCTTCATCTTAATCTGCAGCTCAAGCTGATATTCAAAATATAGATTTGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021379.8 |
||
| CDS-3UTR GCA 90 bp | AGTCTTGTCGACTATGAACAGATTTGCCATTTCATCTGTATGAACTTCAACTCTTTCAGATTTTGGCATTaGCACATTACTGTCCAACTG | + |
|
Preference number: 4 (lower is better) Translates to: SLVDYEQICHFICMNFNSFRFWH*HITVQL Trigger: CAGTTGGACAGTAATGTGGCAATGCCAAAATCTGAA...AGAGTTGAAGTTCATACAGATGAAATGGCAAATCTGTTCATAGTCGACAAGACT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021379.8 |
||
| CDS-3UTR CCA 90 bp | AGTCTTGTCGACTATGAACAGATTTGCCATTTCATCTGTATGAACTTCAACTCTTTCATCTTCAGATTTTaGCATTGCCACATTACTGTC | + |
|
Preference number: 4 (lower is better) Translates to: SLVDYEQICHFICMNFNSFIFRF*HCHITV Trigger: GACAGTAATGTGGCAATGCCAAAATCTGAAGATGAA...AGAGTTGAAGTTCATACAGATGAAATGGCAAATCTGTTCATAGTCGACAAGACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021379.8 |
||
| CDS-3UTR CAA 90 bp | TTGACCTCTTTTCAATGCATGCAACTTAAGAAAACTTCCAGCCCGGCGGTGGTGAGGAGGAAAACCAACTaGTACATAATCGATCCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: LTSFQCMQLKKTSSPAVVRRKTN*YIIDPR Trigger: CCTGGGATCGATTATGTACAAGTTGGTTTTCCTCCT...CACCACCGCCGGGCTGGAAGTTTTCTTAAGTTGCATGCATTGAAAAGAGGTCAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000021379.8 |
||
| CDS-3UTR CAA 90 bp | CAATTGCTCATCAGATACCAAATGGGCTTTTTCACAGACATTTCAGACACTTTACTTCAGATTTTGGCATaGCCACATTACTGTCCAACT | + |
|
Preference number: 5 (lower is better) Translates to: QLLIRYQMGFFTDISDTLLQILA*PHYCPT Trigger: AGTTGGACAGTAATGTGGCAATGCCAAAATCTGAAG...TAAAGTGTCTGAAATGTCTGTGAAAAAGCCCATTTGGTATCTGATGAGCAATTG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000021379.8 |
||
| CDS-3UTR CAA 90 bp | AGTCTTGTCGACTATGAACAGATTTGCCATTTCATCTGTATGAACTTCAACTCTCTTCATCTTCAGATTTaGGCATTGCCACATTACTGT | + |
|
Preference number: 5 (lower is better) Translates to: SLVDYEQICHFICMNFNSLHLQI*ALPHYC Trigger: ACAGTAATGTGGCAATGCCAAAATCTGAAGATGAAG...AGAGTTGAAGTTCATACAGATGAAATGGCAAATCTGTTCATAGTCGACAAGACT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021379.8 |
||